AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0221770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0221770 MtrunA17_Chr4g0068091 76.308 325 41 5 1 290 1 324 3.05e-174 484
Msa0221770 MtrunA17_Chr2g0326331 90.654 107 9 1 114 220 9 114 3.84e-66 203
Msa0221770 MtrunA17_Chr2g0326341 59.322 118 26 1 1 118 1 96 1.34e-37 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0221770 AT1G03360.1 54.128 327 104 8 1 290 3 320 1.87e-118 343

Find 57 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGAGTATTGTCCACTTT+AGG 0.290848 2_1:-70567945 Msa0221770:CDS
AAGGCTGGTGACATTGTTAT+AGG 0.303613 2_1:-70571304 Msa0221770:CDS
CCTTGAGCACGCGATCTTCA+TGG 0.321664 2_1:+70571437 None:intergenic
ATCTTCTATCATGTCATCTC+TGG 0.353592 2_1:+70568094 None:intergenic
ACGCGATCTTCATGGTTGAT+AGG 0.365746 2_1:+70571445 None:intergenic
AAACCAACATTTCCATCATA+TGG 0.395187 2_1:-70568183 Msa0221770:CDS
TATGGTATTGATTTAATACT+TGG 0.403711 2_1:-70568155 Msa0221770:CDS
GATTTAATACTTGGCTGTAA+TGG 0.406532 2_1:-70568146 Msa0221770:CDS
TGGTTCTGAATTCTATGTTC+TGG 0.408537 2_1:-70567844 Msa0221770:CDS
TTGGCTGTAATGGATTCATA+TGG 0.413004 2_1:-70568136 Msa0221770:CDS
TATAACAATGTCACCAGCCT+TGG 0.414901 2_1:+70571306 None:intergenic
CATATGTATTCACTTGTCTC+TGG 0.427412 2_1:+70567984 None:intergenic
TGGTCAGAATCGTTGGAGAT+TGG 0.435250 2_1:-70571174 Msa0221770:CDS
AGGCTGGTGACATTGTTATA+GGG 0.439117 2_1:-70571303 Msa0221770:CDS
TTAGAAATCTAAGTTATTTG+AGG 0.458276 2_1:-70567759 None:intergenic
GTTGTATTGCAGCTTAGTAC+TGG 0.459996 2_1:-70568245 Msa0221770:intron
TAGAAATCTAAGTTATTTGA+GGG 0.461420 2_1:-70567758 None:intergenic
TTTAACATTGGAAATCATCA+AGG 0.462769 2_1:-70567916 Msa0221770:CDS
ATAACAATGTCACCAGCCTT+GGG 0.467609 2_1:+70571307 None:intergenic
TTCCATCATATGGAGCAGTA+TGG 0.468455 2_1:-70568173 Msa0221770:CDS
CGCGATCTTCATGGTTGATA+GGG 0.468771 2_1:+70571446 None:intergenic
CCATGAAGATCGCGTGCTCA+AGG 0.474073 2_1:-70571437 Msa0221770:CDS
TGCTACTCTCTGTGGTGTTG+TGG 0.476983 2_1:-70571380 Msa0221770:CDS
GAATATGCCCGATGGTCTAC+AGG 0.480017 2_1:-70571108 Msa0221770:intron
TAACAGAGATGAGAAGGATT+CGG 0.481181 2_1:-70571567 Msa0221770:exon
TTAAAGCTTGTGGATCAGAT+TGG 0.485538 2_1:+70568063 None:intergenic
ATCTTCTGATTCTTCTGTGA+CGG 0.494275 2_1:-70571482 Msa0221770:CDS
TGTTAAAATGAATCCTAAAG+TGG 0.495226 2_1:+70567932 None:intergenic
AGACAAGTGAATACATATGC+AGG 0.498234 2_1:-70567980 Msa0221770:CDS
TACCATACTGCTCCATATGA+TGG 0.504131 2_1:+70568171 None:intergenic
ATCTGTAGATTGTGAAATTG+TGG 0.509350 2_1:-70567782 Msa0221770:exon
CTGAAAATCACGAACTACTT+CGG 0.517598 2_1:+70568594 None:intergenic
TGTAGGTTGGTCAGAATCGT+TGG 0.520122 2_1:-70571181 Msa0221770:intron
ATCTTCATGGTTGATAGGGA+TGG 0.535963 2_1:+70571450 None:intergenic
CTTGATGTACACGACATGCT+TGG 0.536719 2_1:-70567864 Msa0221770:CDS
GTTCCAGTGCCTTCTGTAGA+CGG 0.539920 2_1:+70571518 None:intergenic
CATGGAACCGCTGATCTCAA+TGG 0.541147 2_1:-70571412 Msa0221770:CDS
CGAGTGTAACAGAGATGAGA+AGG 0.544062 2_1:-70571573 Msa0221770:exon
TTATTGGGAATTAAAGCTTG+TGG 0.544595 2_1:+70568053 None:intergenic
CAAAATACCTGTAGACCATC+GGG 0.548767 2_1:+70571101 None:intergenic
TCAAGGTACAAACCCAAGGC+TGG 0.552288 2_1:-70571319 Msa0221770:intron
TGTTATAGGGCGTGTCATTG+AGG 0.553810 2_1:-70571290 Msa0221770:intron
GCTCCATATGATGGAAATGT+TGG 0.555749 2_1:+70568180 None:intergenic
GATCGCGTGCTCAAGGGACA+TGG 0.557714 2_1:-70571430 Msa0221770:CDS
TTAACATTGGAAATCATCAA+GGG 0.564580 2_1:-70567915 Msa0221770:CDS
ACAAAATACCTGTAGACCAT+CGG 0.565040 2_1:+70571100 None:intergenic
TGGCTGTAATGGATTCATAT+GGG 0.574523 2_1:-70568135 Msa0221770:CDS
CATGAAGATCGCGTGCTCAA+GGG 0.574644 2_1:-70571436 Msa0221770:CDS
GATCCGTCTACAGAAGGCAC+TGG 0.590591 2_1:-70571521 Msa0221770:CDS
TGTAATGGATTCATATGGGT+CGG 0.597510 2_1:-70568131 Msa0221770:CDS
GCGCTCAAGGTACAAACCCA+AGG 0.612552 2_1:-70571323 Msa0221770:intron
TCAGAAGATCCGTCTACAGA+AGG 0.616298 2_1:-70571527 Msa0221770:CDS
GACAAGTGAATACATATGCA+GGG 0.623938 2_1:-70567979 Msa0221770:CDS
AACTTCGCCATTGAGATCAG+CGG 0.651435 2_1:+70571405 None:intergenic
TCTGCTATGAATATGCCCGA+TGG 0.653631 2_1:-70571116 Msa0221770:CDS
GAAGTTGTTGCTACTCTCTG+TGG 0.673894 2_1:-70571388 Msa0221770:CDS
GTACATCAAGATTCGCAGAG+AGG 0.699952 2_1:+70567877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTACTTACTTTTATTA+AGG - chr2_1:70570678-70570697 Msa0221770:intron 10.0%
!! AAACAATATATCTCTATAAA+GGG + chr2_1:70568270-70568289 None:intergenic 15.0%
!! AAAACAATATATCTCTATAA+AGG + chr2_1:70568271-70568290 None:intergenic 15.0%
!!! AGAGATTTTTACTATTTTTT+CGG + chr2_1:70568916-70568935 None:intergenic 15.0%
!! AAAAAATAGTAAAAATCTCT+AGG - chr2_1:70568916-70568935 Msa0221770:intron 15.0%
!! AAATTAATAGATAAAGATGA+GGG - chr2_1:70569127-70569146 Msa0221770:intron 15.0%
!! TCTAAATTATTAAGCTTAAT+TGG + chr2_1:70569328-70569347 None:intergenic 15.0%
!!! TACTTTTATTAAGGAAATAA+CGG - chr2_1:70570687-70570706 Msa0221770:intron 15.0%
!! TCTTTCTAAATAAATAATCG+AGG - chr2_1:70568364-70568383 Msa0221770:intron 20.0%
!! ACTTTATTATAGTAGATACT+AGG - chr2_1:70568434-70568453 Msa0221770:intron 20.0%
!! TTATGTTTCAAAAATGAAAG+AGG - chr2_1:70568460-70568479 Msa0221770:intron 20.0%
!! ACTCAAATAATATTATGCTA+TGG + chr2_1:70568596-70568615 None:intergenic 20.0%
!! ATAGCATAATATTATTTGAG+TGG - chr2_1:70568595-70568614 Msa0221770:CDS 20.0%
!! GAAATTAATAGATAAAGATG+AGG - chr2_1:70569126-70569145 Msa0221770:intron 20.0%
!! AATTAATAGATAAAGATGAG+GGG - chr2_1:70569128-70569147 Msa0221770:intron 20.0%
!! AAGAAATCAAATGTATGATA+TGG + chr2_1:70569304-70569323 None:intergenic 20.0%
!! GATCTTATAAGAATCAAATA+TGG - chr2_1:70570168-70570187 Msa0221770:intron 20.0%
!!! TGATAATGTGTTTATAAAGT+GGG - chr2_1:70570476-70570495 Msa0221770:intron 20.0%
!! ATTTCAAGCTATTAGAATTT+GGG + chr2_1:70570552-70570571 None:intergenic 20.0%
!! AATTTCAAGCTATTAGAATT+TGG + chr2_1:70570553-70570572 None:intergenic 20.0%
!!! TATGGTATTGATTTAATACT+TGG - chr2_1:70571185-70571204 Msa0221770:intron 20.0%
!! ATTCCCAATAAAAATTATGT+CGG - chr2_1:70571299-70571318 Msa0221770:CDS 20.0%
!!! TTTAGGATTCATTTTAACAT+TGG - chr2_1:70571412-70571431 Msa0221770:CDS 20.0%
! TTCAAATCAAAAGCAGAAAA+CGG + chr2_1:70568100-70568119 None:intergenic 25.0%
!!! AATTGTTTTTTGTGTTGTGT+AGG - chr2_1:70568142-70568161 Msa0221770:CDS 25.0%
!!! CAATGTTCTTTGGTTTTATA+TGG - chr2_1:70568306-70568325 Msa0221770:intron 25.0%
!! AAGCAGTTAATAATGAGTTT+TGG - chr2_1:70568682-70568701 Msa0221770:intron 25.0%
! ATTGACATCAACATTAACAT+CGG + chr2_1:70568811-70568830 None:intergenic 25.0%
! ATCAATAGTGTCATATCTTA+CGG - chr2_1:70568990-70569009 Msa0221770:intron 25.0%
!! AATGTATGTTTTCATGAAGT+AGG - chr2_1:70569059-70569078 Msa0221770:intron 25.0%
! TGAAGTAGGTAAACTTATTT+AGG - chr2_1:70569073-70569092 Msa0221770:intron 25.0%
!!! ATTTTGATCAGCACATAAAT+AGG - chr2_1:70569214-70569233 Msa0221770:intron 25.0%
! AAATCAAATGTATGATATGG+TGG + chr2_1:70569301-70569320 None:intergenic 25.0%
!! GCATTGAAAATTTTCTTCAA+CGG + chr2_1:70569496-70569515 None:intergenic 25.0%
! AGATCTTACAGAATCAAATA+TGG + chr2_1:70569612-70569631 None:intergenic 25.0%
! CACTTTATAAACACATTATC+AGG + chr2_1:70570477-70570496 None:intergenic 25.0%
!! CTGATAATGTGTTTATAAAG+TGG - chr2_1:70570475-70570494 Msa0221770:intron 25.0%
! GATAATGTGTTTATAAAGTG+GGG - chr2_1:70570477-70570496 Msa0221770:intron 25.0%
! ATAATGTGTTTATAAAGTGG+GGG - chr2_1:70570478-70570497 Msa0221770:intron 25.0%
! TTTCAAGCTATTAGAATTTG+GGG + chr2_1:70570551-70570570 None:intergenic 25.0%
! AAGAAGTCAAAAATATGGAA+AGG - chr2_1:70570792-70570811 Msa0221770:intron 25.0%
! TAAAAGAACTATGTTTCACA+GGG + chr2_1:70570834-70570853 None:intergenic 25.0%
! ATAAAAGAACTATGTTTCAC+AGG + chr2_1:70570835-70570854 None:intergenic 25.0%
! TCTGATAGTAACTTTATGTA+TGG - chr2_1:70570979-70570998 Msa0221770:intron 25.0%
! CAAAATGTAGTACAAAGTTA+CGG + chr2_1:70571012-70571031 None:intergenic 25.0%
!! GTAACTTTGTACTACATTTT+GGG - chr2_1:70571011-70571030 Msa0221770:intron 25.0%
!! TCTTTTACTTCTGTTACTAA+TGG - chr2_1:70571066-70571085 Msa0221770:intron 25.0%
!! TTTTGTCTCTTCACTAAATA+TGG + chr2_1:70571140-70571159 None:intergenic 25.0%
!! AGACCGACATAATTTTTATT+GGG + chr2_1:70571305-70571324 None:intergenic 25.0%
!! AAGACCGACATAATTTTTAT+TGG + chr2_1:70571306-70571325 None:intergenic 25.0%
! TGTTAAAATGAATCCTAAAG+TGG + chr2_1:70571411-70571430 None:intergenic 25.0%
! TTTAACATTGGAAATCATCA+AGG - chr2_1:70571424-70571443 Msa0221770:CDS 25.0%
! TTAACATTGGAAATCATCAA+GGG - chr2_1:70571425-70571444 Msa0221770:CDS 25.0%
AATAATCGAGGAAAAGTTAC+AGG - chr2_1:70568376-70568395 Msa0221770:intron 30.0%
!! GCAAACTATTCTGTTTTTCT+TGG + chr2_1:70568494-70568513 None:intergenic 30.0%
!!! AATAATGAGTTTTGGATTCG+TGG - chr2_1:70568690-70568709 Msa0221770:intron 30.0%
TTGACATCAACATTAACATC+GGG + chr2_1:70568810-70568829 None:intergenic 30.0%
GTTAATGTTGATGTCAATGT+TGG - chr2_1:70568813-70568832 Msa0221770:intron 30.0%
ACAAAAGGTTGTTCATGTAT+CGG + chr2_1:70568876-70568895 None:intergenic 30.0%
!!! ATGCTTTTTTTCTGCAATCT+GGG - chr2_1:70568945-70568964 Msa0221770:intron 30.0%
!! TGTGTCAACATTTGATTTGA+TGG - chr2_1:70569031-70569050 Msa0221770:intron 30.0%
! GTGCTGATCAAAATTTCAAA+AGG + chr2_1:70569208-70569227 None:intergenic 30.0%
AGTACTTTCAAAACTCAAGA+TGG + chr2_1:70569253-70569272 None:intergenic 30.0%
TATGTCTACAATGATTGTAG+CGG + chr2_1:70569380-70569399 None:intergenic 30.0%
TACAGAATCAAATATGGATG+AGG + chr2_1:70569606-70569625 None:intergenic 30.0%
AAATATGGAAGATGCTGAAA+CGG + chr2_1:70569991-70570010 None:intergenic 30.0%
! TTGTTGTTACATTCTGTTCT+GGG + chr2_1:70569722-70569741 None:intergenic 30.0%
!! TTTGTTGTTACATTCTGTTC+TGG + chr2_1:70569723-70569742 None:intergenic 30.0%
GTTACGATGTAACAACATTA+AGG - chr2_1:70569783-70569802 Msa0221770:intron 30.0%
! TGTTGGTTGTGAAACAAATA+TGG - chr2_1:70569976-70569995 Msa0221770:intron 30.0%
! AATCGAGAAAACTTTTCTGA+AGG - chr2_1:70570021-70570040 Msa0221770:intron 30.0%
ATAAGAATCAAATATGGACG+AGG - chr2_1:70570174-70570193 Msa0221770:intron 30.0%
ATCATTGTAGACATACTTGT+TGG + chr2_1:70570323-70570342 None:intergenic 30.0%
AAGTATGTCTACAATGATTG+TGG - chr2_1:70570325-70570344 Msa0221770:intron 30.0%
!! AAATATGCGCTGTATTTTTG+AGG - chr2_1:70570616-70570635 Msa0221770:intron 30.0%
!!! ATTTTTGACTTCTTGCTTGA+AGG + chr2_1:70570786-70570805 None:intergenic 30.0%
CAAGCAAGAAGTCAAAAATA+TGG - chr2_1:70570787-70570806 Msa0221770:intron 30.0%
CTTATTCTTTCCCTCAAAAA+TGG - chr2_1:70570865-70570884 Msa0221770:intron 30.0%
AGCTACAAAATTTGTATGCT+TGG + chr2_1:70570954-70570973 None:intergenic 30.0%
! GCATACAAATTTTGTAGCTA+TGG - chr2_1:70570955-70570974 Msa0221770:intron 30.0%
! CGTAACTTTGTACTACATTT+TGG - chr2_1:70571010-70571029 Msa0221770:intron 30.0%
AAACCAACATTTCCATCATA+TGG - chr2_1:70571157-70571176 Msa0221770:CDS 30.0%
GATTTAATACTTGGCTGTAA+TGG - chr2_1:70571194-70571213 Msa0221770:intron 30.0%
TTATTGGGAATTAAAGCTTG+TGG + chr2_1:70571290-70571309 None:intergenic 30.0%
ATCTGTAGATTGTGAAATTG+TGG - chr2_1:70571558-70571577 Msa0221770:CDS 30.0%
TAACAGAGATGAGAAGGATT+CGG - chr2_1:70567773-70567792 Msa0221770:three_prime_UTR 35.0%
ATCTTCTGATTCTTCTGTGA+CGG - chr2_1:70567858-70567877 Msa0221770:CDS 35.0%
!!! GTTTTTTGTGTTGTGTAGGT+TGG - chr2_1:70568146-70568165 Msa0221770:CDS 35.0%
ACAAAATACCTGTAGACCAT+CGG + chr2_1:70568243-70568262 None:intergenic 35.0%
ATGTAGTCAGCAATGTTCTT+TGG - chr2_1:70568296-70568315 Msa0221770:intron 35.0%
ATGTTGATGTCAATGTTGGT+AGG - chr2_1:70568817-70568836 Msa0221770:intron 35.0%
! GATACATGAACAACCTTTTG+TGG - chr2_1:70568875-70568894 Msa0221770:intron 35.0%
!!! GATGCTTTTTTTCTGCAATC+TGG - chr2_1:70568944-70568963 Msa0221770:intron 35.0%
AATAGTGTCATATCTTACGG+AGG - chr2_1:70568993-70569012 Msa0221770:intron 35.0%
TGCCAATGGCAAAACAATTA+TGG - chr2_1:70569158-70569177 Msa0221770:intron 35.0%
!! GACCATAATTGTTTTGCCAT+TGG + chr2_1:70569163-70569182 None:intergenic 35.0%
GATCAGCACATAAATAGGTA+TGG - chr2_1:70569219-70569238 Msa0221770:intron 35.0%
!!! GAGTTTTGAAAGTACTCGAT+TGG - chr2_1:70569257-70569276 Msa0221770:intron 35.0%
! TTCAATGCTTTTCTTCACCA+AGG - chr2_1:70569508-70569527 Msa0221770:intron 35.0%
ATGATCCAAGGTTCAAAAGT+AGG + chr2_1:70569579-70569598 None:intergenic 35.0%
! TGTTGGCTGTGAAACAAATA+TGG + chr2_1:70569677-70569696 None:intergenic 35.0%
TGTTGTTACATTCTGTTCTG+GGG + chr2_1:70569721-70569740 None:intergenic 35.0%
GTAACAACAAATTCACAGCA+AGG - chr2_1:70569732-70569751 Msa0221770:intron 35.0%
!! TTTTTCAACCTTTGATTCGC+AGG + chr2_1:70569869-70569888 None:intergenic 35.0%
TATTTACACGCTGTATGTGT+TGG - chr2_1:70569959-70569978 Msa0221770:intron 35.0%
GGTCTTCCAAGAATCAAATA+TGG - chr2_1:70570042-70570061 Msa0221770:intron 35.0%
ATCATCGTAGACATAGTTGT+TGG + chr2_1:70570254-70570273 None:intergenic 35.0%
! GATTGTGTCTTTTCTTCAAC+AGG - chr2_1:70570271-70570290 Msa0221770:intron 35.0%
AGGAAGAAGAAGAAAACAAG+AGG - chr2_1:70570291-70570310 Msa0221770:intron 35.0%
GGAAGAAGAAGAAAACAAGA+GGG - chr2_1:70570292-70570311 Msa0221770:intron 35.0%
TTTCCCAATAGATCTTGGAT+AGG + chr2_1:70570382-70570401 None:intergenic 35.0%
! AGCTATTAGAATTTGGGGTT+GGG + chr2_1:70570546-70570565 None:intergenic 35.0%
! AAGCTATTAGAATTTGGGGT+TGG + chr2_1:70570547-70570566 None:intergenic 35.0%
ATTGTTCTTTCCATTGCTAG+AGG - chr2_1:70570570-70570589 Msa0221770:intron 35.0%
TGTGGACATGTACATAATGT+AGG + chr2_1:70570724-70570743 None:intergenic 35.0%
TACATTATGTACATGTCCAC+AGG - chr2_1:70570723-70570742 Msa0221770:intron 35.0%
CTGAAAATCACGAACTACTT+CGG + chr2_1:70570749-70570768 None:intergenic 35.0%
TTTCCCTCAAAAATGGTACT+CGG - chr2_1:70570872-70570891 Msa0221770:intron 35.0%
!! TAACCGAGTACCATTTTTGA+GGG + chr2_1:70570878-70570897 None:intergenic 35.0%
!! ATAACCGAGTACCATTTTTG+AGG + chr2_1:70570879-70570898 None:intergenic 35.0%
!! TTGGCTGTAATGGATTCATA+TGG - chr2_1:70571204-70571223 Msa0221770:intron 35.0%
!! TGGCTGTAATGGATTCATAT+GGG - chr2_1:70571205-70571224 Msa0221770:intron 35.0%
!! TGTAATGGATTCATATGGGT+CGG - chr2_1:70571209-70571228 Msa0221770:intron 35.0%
ATCTTCTATCATGTCATCTC+TGG + chr2_1:70571249-70571268 None:intergenic 35.0%
TTAAAGCTTGTGGATCAGAT+TGG + chr2_1:70571280-70571299 None:intergenic 35.0%
CATATGTATTCACTTGTCTC+TGG + chr2_1:70571359-70571378 None:intergenic 35.0%
AGACAAGTGAATACATATGC+AGG - chr2_1:70571360-70571379 Msa0221770:intron 35.0%
GACAAGTGAATACATATGCA+GGG - chr2_1:70571361-70571380 Msa0221770:intron 35.0%
!! GTTAGAGTATTGTCCACTTT+AGG - chr2_1:70571395-70571414 Msa0221770:CDS 35.0%
!! TGGTTCTGAATTCTATGTTC+TGG - chr2_1:70571496-70571515 Msa0221770:CDS 35.0%
!! ATCTTCATGGTTGATAGGGA+TGG + chr2_1:70567893-70567912 None:intergenic 40.0%
ATAACAATGTCACCAGCCTT+GGG + chr2_1:70568036-70568055 None:intergenic 40.0%
TATAACAATGTCACCAGCCT+TGG + chr2_1:70568037-70568056 None:intergenic 40.0%
AAGGCTGGTGACATTGTTAT+AGG - chr2_1:70568036-70568055 Msa0221770:CDS 40.0%
AGGCTGGTGACATTGTTATA+GGG - chr2_1:70568037-70568056 Msa0221770:CDS 40.0%
CAAAATACCTGTAGACCATC+GGG + chr2_1:70568242-70568261 None:intergenic 40.0%
! ATTCGTGGTGAATCGATTCT+AGG - chr2_1:70568705-70568724 Msa0221770:intron 40.0%
TAGGCTGCAATTGTAGAAGA+TGG - chr2_1:70568724-70568743 Msa0221770:intron 40.0%
AGGCTGCAATTGTAGAAGAT+GGG - chr2_1:70568725-70568744 Msa0221770:intron 40.0%
AAATCCCCAAATATGTCCCA+AGG + chr2_1:70568758-70568777 None:intergenic 40.0%
! TGGGACATATTTGGGGATTT+TGG - chr2_1:70568758-70568777 Msa0221770:intron 40.0%
! GGGACATATTTGGGGATTTT+GGG - chr2_1:70568759-70568778 Msa0221770:intron 40.0%
AAAGGTTGTTCATGTATCGG+AGG + chr2_1:70568873-70568892 None:intergenic 40.0%
ATCATGTGCATCACCACAAA+AGG + chr2_1:70568891-70568910 None:intergenic 40.0%
TGTCATATCTTACGGAGGTT+AGG - chr2_1:70568998-70569017 Msa0221770:intron 40.0%
GTCATATCTTACGGAGGTTA+GGG - chr2_1:70568999-70569018 Msa0221770:intron 40.0%
TCATATCTTACGGAGGTTAG+GGG - chr2_1:70569000-70569019 Msa0221770:intron 40.0%
AAGTAGGCTTCCAATGAACT+CGG + chr2_1:70569563-70569582 None:intergenic 40.0%
ACATCGTAACTGTGAATCAG+AGG + chr2_1:70569773-70569792 None:intergenic 40.0%
TTGAAACCGTGACAAAGTGA+CGG + chr2_1:70569820-70569839 None:intergenic 40.0%
ACTTTGTACCTGCGAATCAA+AGG - chr2_1:70569858-70569877 Msa0221770:intron 40.0%
! TTGTGCACTTCGTTCTGTTT+TGG - chr2_1:70569929-70569948 Msa0221770:intron 40.0%
! TGTGCACTTCGTTCTGTTTT+GGG - chr2_1:70569930-70569949 Msa0221770:intron 40.0%
ATGGAAGATGCTGAAACGAA+AGG - chr2_1:70569995-70570014 Msa0221770:intron 40.0%
CCTCGTCCATATTTGATTCT+TGG + chr2_1:70570051-70570070 None:intergenic 40.0%
CCAAGAATCAAATATGGACG+AGG - chr2_1:70570048-70570067 Msa0221770:intron 40.0%
! AAGTAGCCTTACAACGAACT+CGG - chr2_1:70570091-70570110 Msa0221770:intron 40.0%
!! CAGTCTTGTTATTGCAAGCT+TGG - chr2_1:70570348-70570367 Msa0221770:intron 40.0%
TTATTGCAAGCTTGGCATCA+AGG - chr2_1:70570356-70570375 Msa0221770:intron 40.0%
AAGGCCTATCCAAGATCTAT+TGG - chr2_1:70570375-70570394 Msa0221770:intron 40.0%
AGGCCTATCCAAGATCTATT+GGG - chr2_1:70570376-70570395 Msa0221770:intron 40.0%
CTATTGGGAAACCTGCTATT+AGG - chr2_1:70570391-70570410 Msa0221770:intron 40.0%
GTCTCACGTTGGATAAGATA+TGG - chr2_1:70570451-70570470 Msa0221770:intron 40.0%
CCTTACAAAGTATGCTGGTA+AGG + chr2_1:70570513-70570532 None:intergenic 40.0%
CCTTACCAGCATACTTTGTA+AGG - chr2_1:70570510-70570529 Msa0221770:intron 40.0%
CTCAACCTTACAAAGTATGC+TGG + chr2_1:70570518-70570537 None:intergenic 40.0%
!! TATGCGCTGTATTTTTGAGG+AGG - chr2_1:70570619-70570638 Msa0221770:intron 40.0%
! GTTCGTGATTTTCAGCATGA+TGG - chr2_1:70570754-70570773 Msa0221770:intron 40.0%
CCATTTGTACTGTCTCATAC+TGG + chr2_1:70570911-70570930 None:intergenic 40.0%
CCAGTATGAGACAGTACAAA+TGG - chr2_1:70570908-70570927 Msa0221770:intron 40.0%
TGTATGCTTGGATCACAAAC+AGG + chr2_1:70570942-70570961 None:intergenic 40.0%
GTTGTATTGCAGCTTAGTAC+TGG - chr2_1:70571095-70571114 Msa0221770:intron 40.0%
! GCTCCATATGATGGAAATGT+TGG + chr2_1:70571163-70571182 None:intergenic 40.0%
TTCCATCATATGGAGCAGTA+TGG - chr2_1:70571167-70571186 Msa0221770:CDS 40.0%
TACCATACTGCTCCATATGA+TGG + chr2_1:70571172-70571191 None:intergenic 40.0%
! TGTTCTGGTTGCTGAAAAAG+AGG - chr2_1:70571511-70571530 Msa0221770:CDS 40.0%
TTGCTGAAAAAGAGGCAGAA+AGG - chr2_1:70571519-70571538 Msa0221770:CDS 40.0%
CGAGTGTAACAGAGATGAGA+AGG - chr2_1:70567767-70567786 Msa0221770:three_prime_UTR 45.0%
TCAGAAGATCCGTCTACAGA+AGG - chr2_1:70567813-70567832 Msa0221770:CDS 45.0%
! CGCGATCTTCATGGTTGATA+GGG + chr2_1:70567897-70567916 None:intergenic 45.0%
ACGCGATCTTCATGGTTGAT+AGG + chr2_1:70567898-70567917 None:intergenic 45.0%
AACTTCGCCATTGAGATCAG+CGG + chr2_1:70567938-70567957 None:intergenic 45.0%
GAAGTTGTTGCTACTCTCTG+TGG - chr2_1:70567952-70567971 Msa0221770:CDS 45.0%
! TGTTATAGGGCGTGTCATTG+AGG - chr2_1:70568050-70568069 Msa0221770:CDS 45.0%
!! TGTAGGTTGGTCAGAATCGT+TGG - chr2_1:70568159-70568178 Msa0221770:CDS 45.0%
TGGTCAGAATCGTTGGAGAT+TGG - chr2_1:70568166-70568185 Msa0221770:CDS 45.0%
TCTGCTATGAATATGCCCGA+TGG - chr2_1:70568224-70568243 Msa0221770:CDS 45.0%
ACAGTGCCTTGGGACATATT+TGG - chr2_1:70568749-70568768 Msa0221770:intron 45.0%
CAGTGCCTTGGGACATATTT+GGG - chr2_1:70568750-70568769 Msa0221770:intron 45.0%
AGTGCCTTGGGACATATTTG+GGG - chr2_1:70568751-70568770 Msa0221770:intron 45.0%
TTTGGGAAGCTCTTAGTTGC+AGG - chr2_1:70568776-70568795 Msa0221770:intron 45.0%
TTGGGAAGCTCTTAGTTGCA+GGG - chr2_1:70568777-70568796 Msa0221770:intron 45.0%
! TTCTGCAATCTGGGACTGAT+TGG - chr2_1:70568954-70568973 Msa0221770:intron 45.0%
! TCTGCAATCTGGGACTGATT+GGG - chr2_1:70568955-70568974 Msa0221770:intron 45.0%
!! TCTGGGACTGATTGGGTTTT+TGG - chr2_1:70568962-70568981 Msa0221770:intron 45.0%
! CTGGGACTGATTGGGTTTTT+GGG - chr2_1:70568963-70568982 Msa0221770:intron 45.0%
! TGGGACTGATTGGGTTTTTG+GGG - chr2_1:70568964-70568983 Msa0221770:intron 45.0%
TGAGGGGTTACAAATGCCAA+TGG - chr2_1:70569144-70569163 Msa0221770:intron 45.0%
TCTTCAACAGCAGCTCAAAC+AGG + chr2_1:70569432-70569451 None:intergenic 45.0%
GCAGCAACAAGAACAGCAAA+AGG + chr2_1:70569471-70569490 None:intergenic 45.0%
!! TTCACCAAGGCTTTGAAGTG+AGG - chr2_1:70569521-70569540 Msa0221770:intron 45.0%
!! CTTTGAAGTGAGGCTGAGAT+AGG - chr2_1:70569531-70569550 Msa0221770:intron 45.0%
!! GGAAGCCTACTTTTGAACCT+TGG - chr2_1:70569571-70569590 Msa0221770:intron 45.0%
GGATGAGGCTAAATGATCCA+AGG + chr2_1:70569591-70569610 None:intergenic 45.0%
TGAAACGGAAGGAAGAATCG+AGG + chr2_1:70569647-70569666 None:intergenic 45.0%
ATGGAAGATGCTGAAACGGA+AGG + chr2_1:70569658-70569677 None:intergenic 45.0%
ATGTTTCCAGCTGTAGGTGT+TGG + chr2_1:70569694-70569713 None:intergenic 45.0%
! CTGAAACCGTCACTTTGTCA+CGG - chr2_1:70569811-70569830 Msa0221770:intron 45.0%
! GTGCACTTCGTTCTGTTTTG+GGG - chr2_1:70569931-70569950 Msa0221770:intron 45.0%
! GTAAGGCTACTTTCGAACCT+TGG + chr2_1:70570083-70570102 None:intergenic 45.0%
! AGTAGCCTTACAACGAACTC+GGG - chr2_1:70570092-70570111 Msa0221770:intron 45.0%
!! TTCACCAAGGCTTTGAAGTG+AGG + chr2_1:70569521-70569540 None:intergenic 45.0%
AAAGCCTTGGTGAAGCAAAC+AGG - chr2_1:70570130-70570149 Msa0221770:intron 45.0%
AAGCCTTGGTGAAGCAAACA+GGG - chr2_1:70570131-70570150 Msa0221770:intron 45.0%
TTTCCCTGTTTGCTTCACCA+AGG + chr2_1:70570137-70570156 None:intergenic 45.0%
GCAGGTTTCCCAATAGATCT+TGG + chr2_1:70570387-70570406 None:intergenic 45.0%
CTAGAGCATGACCTAATAGC+AGG + chr2_1:70570405-70570424 None:intergenic 45.0%
TGAGACTCTTCAACACAAGC+AGG + chr2_1:70570437-70570456 None:intergenic 45.0%
TGTGTTGAAGAGTCTCACGT+TGG - chr2_1:70570440-70570459 Msa0221770:intron 45.0%
CAAAGTATGCTGGTAAGGTG+AGG + chr2_1:70570508-70570527 None:intergenic 45.0%
GTACATCAAGATTCGCAGAG+AGG + chr2_1:70571466-70571485 None:intergenic 45.0%
CTTGATGTACACGACATGCT+TGG - chr2_1:70571476-70571495 Msa0221770:CDS 45.0%
GTTCCAGTGCCTTCTGTAGA+CGG + chr2_1:70567825-70567844 None:intergenic 50.0%
CATGAAGATCGCGTGCTCAA+GGG - chr2_1:70567904-70567923 Msa0221770:CDS 50.0%
CATGGAACCGCTGATCTCAA+TGG - chr2_1:70567928-70567947 Msa0221770:CDS 50.0%
! TGCTACTCTCTGTGGTGTTG+TGG - chr2_1:70567960-70567979 Msa0221770:CDS 50.0%
TCAAGGTACAAACCCAAGGC+TGG - chr2_1:70568021-70568040 Msa0221770:CDS 50.0%
GAATATGCCCGATGGTCTAC+AGG - chr2_1:70568232-70568251 Msa0221770:CDS 50.0%
AGAAGATGGGAACAGTGCCT+TGG - chr2_1:70568738-70568757 Msa0221770:intron 50.0%
GAAGATGGGAACAGTGCCTT+GGG - chr2_1:70568739-70568758 Msa0221770:intron 50.0%
TAGGATCGCGAGTTACCTTG+TGG - chr2_1:70568836-70568855 Msa0221770:intron 50.0%
AGGATCGCGAGTTACCTTGT+GGG - chr2_1:70568837-70568856 Msa0221770:intron 50.0%
GAGGATCAAGCAATCCCACA+AGG + chr2_1:70568854-70568873 None:intergenic 50.0%
!! GGGACTGATTGGGTTTTTGG+GGG - chr2_1:70568965-70568984 Msa0221770:intron 50.0%
!! GGACTGATTGGGTTTTTGGG+GGG - chr2_1:70568966-70568985 Msa0221770:intron 50.0%
CAACAGCAGCTCAAACAGGA+GGG + chr2_1:70569428-70569447 None:intergenic 50.0%
TCAACAGCAGCTCAAACAGG+AGG + chr2_1:70569429-70569448 None:intergenic 50.0%
TCAGCCTCACTTCAAAGCCT+TGG + chr2_1:70570117-70570136 None:intergenic 50.0%
AGTGAGGCTGAGATAGGTTG+AGG - chr2_1:70569537-70569556 Msa0221770:intron 50.0%
! TAGGTTGAGGCCGAGTTCAT+TGG - chr2_1:70569550-70569569 Msa0221770:intron 50.0%
!! AAGGCTTTGAAGTGAGGCTG+AGG + chr2_1:70569527-70569546 None:intergenic 50.0%
TCAGCCTCACTTCAAAGCCT+TGG - chr2_1:70570117-70570136 Msa0221770:intron 50.0%
CTCTTCAACACAAGCAGGAC+TGG + chr2_1:70570432-70570451 None:intergenic 50.0%
CTTTCCATTGCTAGAGGCGA+AGG - chr2_1:70570576-70570595 Msa0221770:intron 50.0%
! GATCCGTCTACAGAAGGCAC+TGG - chr2_1:70567819-70567838 Msa0221770:CDS 55.0%
CCTTGAGCACGCGATCTTCA+TGG + chr2_1:70567906-70567925 None:intergenic 55.0%
CCATGAAGATCGCGTGCTCA+AGG - chr2_1:70567903-70567922 Msa0221770:CDS 55.0%
GCGCTCAAGGTACAAACCCA+AGG - chr2_1:70568017-70568036 Msa0221770:CDS 55.0%
TCACAGCCAACACCTACAGC+TGG - chr2_1:70569685-70569704 Msa0221770:intron 55.0%
GGCTGCATGTTTCCAGCTGT+AGG + chr2_1:70569700-70569719 None:intergenic 55.0%
GGACGAGGCTACAGAATCCA+AGG - chr2_1:70570063-70570082 Msa0221770:intron 55.0%
TGAGGCCCGAGTTCGTTGTA+AGG + chr2_1:70570100-70570119 None:intergenic 55.0%
CTGTCCTTCGCCTCTAGCAA+TGG + chr2_1:70570583-70570602 None:intergenic 55.0%
TCACGAACTACTTCGGCCTG+TGG + chr2_1:70570742-70570761 None:intergenic 55.0%
GATCGCGTGCTCAAGGGACA+TGG - chr2_1:70567910-70567929 Msa0221770:CDS 60.0%
GTGTGCGTGCTTTGCGCTCA+AGG - chr2_1:70568004-70568023 Msa0221770:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 70567761 70571601 70567761 ID=Msa0221770;Name=Msa0221770
chr2_1 mRNA 70567761 70571601 70567761 ID=Msa0221770-mRNA-1;Parent=Msa0221770;Name=Msa0221770-mRNA-1;_AED=0.18;_eAED=0.18;_QI=20|0.5|0.6|1|0.5|0.6|5|36|292
chr2_1 exon 70567761 70568255 70567761 ID=Msa0221770-mRNA-1:exon:20220;Parent=Msa0221770-mRNA-1
chr2_1 exon 70568549 70568617 70568549 ID=Msa0221770-mRNA-1:exon:20219;Parent=Msa0221770-mRNA-1
chr2_1 exon 70571109 70571198 70571109 ID=Msa0221770-mRNA-1:exon:20218;Parent=Msa0221770-mRNA-1
chr2_1 exon 70571291 70571336 70571291 ID=Msa0221770-mRNA-1:exon:20217;Parent=Msa0221770-mRNA-1
chr2_1 exon 70571367 70571601 70571367 ID=Msa0221770-mRNA-1:exon:20216;Parent=Msa0221770-mRNA-1
chr2_1 five_prime_UTR 70571582 70571601 70571582 ID=Msa0221770-mRNA-1:five_prime_utr;Parent=Msa0221770-mRNA-1
chr2_1 CDS 70571367 70571581 70571367 ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1
chr2_1 CDS 70571291 70571336 70571291 ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1
chr2_1 CDS 70571109 70571198 70571109 ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1
chr2_1 CDS 70568549 70568617 70568549 ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1
chr2_1 CDS 70567797 70568255 70567797 ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1
chr2_1 three_prime_UTR 70567761 70567796 70567761 ID=Msa0221770-mRNA-1:three_prime_utr;Parent=Msa0221770-mRNA-1
Gene Sequence

>Msa0221770

ATGAGAAGGATTCGGTTTCAATTGAGTCAAACTCAGAAGATCCGTCTACAGAAGGCACTGGAACAGCTCGAATCTCTATCTTCTGATTCTTCTGTGACGGTATCTGATTCCATCCCTATCAACCATGAAGATCGCGTGCTCAAGGGACATGGAACCGCTGATCTCAATGGCGAAGTTGTTGCTACTCTCTGTGGTGTTGTGGAGCGTGTTGACAAGTACAAACCCAAGGCTGGTGACATTGTTATAGGGCGTGTCATTGAGGTTGGTCAGAATCGTTGGAGATTGGATATTAATTGCAGTCAAAATGCTTATATGATGCTTTCTGCTATGAATATGCCCGATGGTCTACAGGCCGAAGTAGTTCGTGATTTTCAGCATGATGGCTTATACCTTCAAGCAAGAAGTCAAAAATATGGAAAGCTTAGTACTGGTCAACTGCTTACAGTCGCACCATATTTAGTGAAGAGACAAAACCAACATTTCCATCATATGGAGCAGTATGGTATTGATTTAATACTTGGCTGTAATGGATTCATATGGGTCGGAGAACATGTTGAAGCCAGAGATGACATGATAGAAGATCAAATAAACCAATCTGATCCACAAGCTTTAATTCCCAATAAAAATTATGTCGGTCTTTGTGAAGAACAAGAGAAAAACTATACTGCTCCAGAGACAAGTGAATACATATGCAGGGCTGCTAATGCTGTTAGAGTATTGTCCACTTTAGGATTCATTTTAACATTGGAAATCATCAAGGGAGTTATTGATCTAAGCCTCTCTGCGAATCTTGATGTACACGACATGCTTGGTTCTGAATTCTATGTTCTGGTTGCTGAAAAAGAGGCAGAAAGGAGAAGCTCAAATAAAAATCTGTAG

Protein sequence

>Msa0221770

MRRIRFQLSQTQKIRLQKALEQLESLSSDSSVTVSDSIPINHEDRVLKGHGTADLNGEVVATLCGVVERVDKYKPKAGDIVIGRVIEVGQNRWRLDINCSQNAYMMLSAMNMPDGLQAEVVRDFQHDGLYLQARSQKYGKLSTGQLLTVAPYLVKRQNQHFHHMEQYGIDLILGCNGFIWVGEHVEARDDMIEDQINQSDPQALIPNKNYVGLCEEQEKNYTAPETSEYICRAANAVRVLSTLGFILTLEIIKGVIDLSLSANLDVHDMLGSEFYVLVAEKEAERRSSNKNL*