Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221770 | XP_004495115.1 | 75.153 | 326 | 43 | 5 | 1 | 290 | 1 | 324 | 1.03e-170 | 485 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221770 | sp|Q9ZVT7|RRP4_ARATH | 54.128 | 327 | 104 | 8 | 1 | 290 | 3 | 320 | 1.84e-117 | 343 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221770 | A0A1S2XVD5 | 75.153 | 326 | 43 | 5 | 1 | 290 | 1 | 324 | 4.90e-171 | 485 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0127800 | Msa0221770 | 0.802719 | 4.910339e-49 | -8.615850e-47 |
Msa0218370 | Msa0221770 | 0.803030 | 4.235266e-49 | -8.615850e-47 |
Msa0221770 | Msa0300990 | 0.812618 | 3.871574e-51 | -8.615850e-47 |
Msa0221770 | Msa0363790 | 0.807058 | 6.084794e-50 | -8.615850e-47 |
Msa0221770 | Msa0455760 | 0.829193 | 5.903606e-55 | -8.615850e-47 |
Msa0221770 | Msa0475600 | 0.803614 | 3.205706e-49 | -8.615850e-47 |
Msa0221770 | Msa0832340 | 0.817962 | 2.512324e-52 | -8.615850e-47 |
Msa0221770 | Msa1122150 | 0.808867 | 2.507317e-50 | -8.615850e-47 |
Msa0221770 | Msa1160560 | 0.803908 | 2.785442e-49 | -8.615850e-47 |
Msa0221770 | Msa1271130 | 0.803272 | 3.772608e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221770 | MtrunA17_Chr4g0068091 | 76.308 | 325 | 41 | 5 | 1 | 290 | 1 | 324 | 3.05e-174 | 484 |
Msa0221770 | MtrunA17_Chr2g0326331 | 90.654 | 107 | 9 | 1 | 114 | 220 | 9 | 114 | 3.84e-66 | 203 |
Msa0221770 | MtrunA17_Chr2g0326341 | 59.322 | 118 | 26 | 1 | 1 | 118 | 1 | 96 | 1.34e-37 | 129 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221770 | AT1G03360.1 | 54.128 | 327 | 104 | 8 | 1 | 290 | 3 | 320 | 1.87e-118 | 343 |
Find 57 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTAGAGTATTGTCCACTTT+AGG | 0.290848 | 2_1:-70567945 | Msa0221770:CDS |
AAGGCTGGTGACATTGTTAT+AGG | 0.303613 | 2_1:-70571304 | Msa0221770:CDS |
CCTTGAGCACGCGATCTTCA+TGG | 0.321664 | 2_1:+70571437 | None:intergenic |
ATCTTCTATCATGTCATCTC+TGG | 0.353592 | 2_1:+70568094 | None:intergenic |
ACGCGATCTTCATGGTTGAT+AGG | 0.365746 | 2_1:+70571445 | None:intergenic |
AAACCAACATTTCCATCATA+TGG | 0.395187 | 2_1:-70568183 | Msa0221770:CDS |
TATGGTATTGATTTAATACT+TGG | 0.403711 | 2_1:-70568155 | Msa0221770:CDS |
GATTTAATACTTGGCTGTAA+TGG | 0.406532 | 2_1:-70568146 | Msa0221770:CDS |
TGGTTCTGAATTCTATGTTC+TGG | 0.408537 | 2_1:-70567844 | Msa0221770:CDS |
TTGGCTGTAATGGATTCATA+TGG | 0.413004 | 2_1:-70568136 | Msa0221770:CDS |
TATAACAATGTCACCAGCCT+TGG | 0.414901 | 2_1:+70571306 | None:intergenic |
CATATGTATTCACTTGTCTC+TGG | 0.427412 | 2_1:+70567984 | None:intergenic |
TGGTCAGAATCGTTGGAGAT+TGG | 0.435250 | 2_1:-70571174 | Msa0221770:CDS |
AGGCTGGTGACATTGTTATA+GGG | 0.439117 | 2_1:-70571303 | Msa0221770:CDS |
TTAGAAATCTAAGTTATTTG+AGG | 0.458276 | 2_1:-70567759 | None:intergenic |
GTTGTATTGCAGCTTAGTAC+TGG | 0.459996 | 2_1:-70568245 | Msa0221770:intron |
TAGAAATCTAAGTTATTTGA+GGG | 0.461420 | 2_1:-70567758 | None:intergenic |
TTTAACATTGGAAATCATCA+AGG | 0.462769 | 2_1:-70567916 | Msa0221770:CDS |
ATAACAATGTCACCAGCCTT+GGG | 0.467609 | 2_1:+70571307 | None:intergenic |
TTCCATCATATGGAGCAGTA+TGG | 0.468455 | 2_1:-70568173 | Msa0221770:CDS |
CGCGATCTTCATGGTTGATA+GGG | 0.468771 | 2_1:+70571446 | None:intergenic |
CCATGAAGATCGCGTGCTCA+AGG | 0.474073 | 2_1:-70571437 | Msa0221770:CDS |
TGCTACTCTCTGTGGTGTTG+TGG | 0.476983 | 2_1:-70571380 | Msa0221770:CDS |
GAATATGCCCGATGGTCTAC+AGG | 0.480017 | 2_1:-70571108 | Msa0221770:intron |
TAACAGAGATGAGAAGGATT+CGG | 0.481181 | 2_1:-70571567 | Msa0221770:exon |
TTAAAGCTTGTGGATCAGAT+TGG | 0.485538 | 2_1:+70568063 | None:intergenic |
ATCTTCTGATTCTTCTGTGA+CGG | 0.494275 | 2_1:-70571482 | Msa0221770:CDS |
TGTTAAAATGAATCCTAAAG+TGG | 0.495226 | 2_1:+70567932 | None:intergenic |
AGACAAGTGAATACATATGC+AGG | 0.498234 | 2_1:-70567980 | Msa0221770:CDS |
TACCATACTGCTCCATATGA+TGG | 0.504131 | 2_1:+70568171 | None:intergenic |
ATCTGTAGATTGTGAAATTG+TGG | 0.509350 | 2_1:-70567782 | Msa0221770:exon |
CTGAAAATCACGAACTACTT+CGG | 0.517598 | 2_1:+70568594 | None:intergenic |
TGTAGGTTGGTCAGAATCGT+TGG | 0.520122 | 2_1:-70571181 | Msa0221770:intron |
ATCTTCATGGTTGATAGGGA+TGG | 0.535963 | 2_1:+70571450 | None:intergenic |
CTTGATGTACACGACATGCT+TGG | 0.536719 | 2_1:-70567864 | Msa0221770:CDS |
GTTCCAGTGCCTTCTGTAGA+CGG | 0.539920 | 2_1:+70571518 | None:intergenic |
CATGGAACCGCTGATCTCAA+TGG | 0.541147 | 2_1:-70571412 | Msa0221770:CDS |
CGAGTGTAACAGAGATGAGA+AGG | 0.544062 | 2_1:-70571573 | Msa0221770:exon |
TTATTGGGAATTAAAGCTTG+TGG | 0.544595 | 2_1:+70568053 | None:intergenic |
CAAAATACCTGTAGACCATC+GGG | 0.548767 | 2_1:+70571101 | None:intergenic |
TCAAGGTACAAACCCAAGGC+TGG | 0.552288 | 2_1:-70571319 | Msa0221770:intron |
TGTTATAGGGCGTGTCATTG+AGG | 0.553810 | 2_1:-70571290 | Msa0221770:intron |
GCTCCATATGATGGAAATGT+TGG | 0.555749 | 2_1:+70568180 | None:intergenic |
GATCGCGTGCTCAAGGGACA+TGG | 0.557714 | 2_1:-70571430 | Msa0221770:CDS |
TTAACATTGGAAATCATCAA+GGG | 0.564580 | 2_1:-70567915 | Msa0221770:CDS |
ACAAAATACCTGTAGACCAT+CGG | 0.565040 | 2_1:+70571100 | None:intergenic |
TGGCTGTAATGGATTCATAT+GGG | 0.574523 | 2_1:-70568135 | Msa0221770:CDS |
CATGAAGATCGCGTGCTCAA+GGG | 0.574644 | 2_1:-70571436 | Msa0221770:CDS |
GATCCGTCTACAGAAGGCAC+TGG | 0.590591 | 2_1:-70571521 | Msa0221770:CDS |
TGTAATGGATTCATATGGGT+CGG | 0.597510 | 2_1:-70568131 | Msa0221770:CDS |
GCGCTCAAGGTACAAACCCA+AGG | 0.612552 | 2_1:-70571323 | Msa0221770:intron |
TCAGAAGATCCGTCTACAGA+AGG | 0.616298 | 2_1:-70571527 | Msa0221770:CDS |
GACAAGTGAATACATATGCA+GGG | 0.623938 | 2_1:-70567979 | Msa0221770:CDS |
AACTTCGCCATTGAGATCAG+CGG | 0.651435 | 2_1:+70571405 | None:intergenic |
TCTGCTATGAATATGCCCGA+TGG | 0.653631 | 2_1:-70571116 | Msa0221770:CDS |
GAAGTTGTTGCTACTCTCTG+TGG | 0.673894 | 2_1:-70571388 | Msa0221770:CDS |
GTACATCAAGATTCGCAGAG+AGG | 0.699952 | 2_1:+70567877 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTTACTTACTTTTATTA+AGG | - | chr2_1:70570678-70570697 | Msa0221770:intron | 10.0% |
!! | AAACAATATATCTCTATAAA+GGG | + | chr2_1:70568270-70568289 | None:intergenic | 15.0% |
!! | AAAACAATATATCTCTATAA+AGG | + | chr2_1:70568271-70568290 | None:intergenic | 15.0% |
!!! | AGAGATTTTTACTATTTTTT+CGG | + | chr2_1:70568916-70568935 | None:intergenic | 15.0% |
!! | AAAAAATAGTAAAAATCTCT+AGG | - | chr2_1:70568916-70568935 | Msa0221770:intron | 15.0% |
!! | AAATTAATAGATAAAGATGA+GGG | - | chr2_1:70569127-70569146 | Msa0221770:intron | 15.0% |
!! | TCTAAATTATTAAGCTTAAT+TGG | + | chr2_1:70569328-70569347 | None:intergenic | 15.0% |
!!! | TACTTTTATTAAGGAAATAA+CGG | - | chr2_1:70570687-70570706 | Msa0221770:intron | 15.0% |
!! | TCTTTCTAAATAAATAATCG+AGG | - | chr2_1:70568364-70568383 | Msa0221770:intron | 20.0% |
!! | ACTTTATTATAGTAGATACT+AGG | - | chr2_1:70568434-70568453 | Msa0221770:intron | 20.0% |
!! | TTATGTTTCAAAAATGAAAG+AGG | - | chr2_1:70568460-70568479 | Msa0221770:intron | 20.0% |
!! | ACTCAAATAATATTATGCTA+TGG | + | chr2_1:70568596-70568615 | None:intergenic | 20.0% |
!! | ATAGCATAATATTATTTGAG+TGG | - | chr2_1:70568595-70568614 | Msa0221770:CDS | 20.0% |
!! | GAAATTAATAGATAAAGATG+AGG | - | chr2_1:70569126-70569145 | Msa0221770:intron | 20.0% |
!! | AATTAATAGATAAAGATGAG+GGG | - | chr2_1:70569128-70569147 | Msa0221770:intron | 20.0% |
!! | AAGAAATCAAATGTATGATA+TGG | + | chr2_1:70569304-70569323 | None:intergenic | 20.0% |
!! | GATCTTATAAGAATCAAATA+TGG | - | chr2_1:70570168-70570187 | Msa0221770:intron | 20.0% |
!!! | TGATAATGTGTTTATAAAGT+GGG | - | chr2_1:70570476-70570495 | Msa0221770:intron | 20.0% |
!! | ATTTCAAGCTATTAGAATTT+GGG | + | chr2_1:70570552-70570571 | None:intergenic | 20.0% |
!! | AATTTCAAGCTATTAGAATT+TGG | + | chr2_1:70570553-70570572 | None:intergenic | 20.0% |
!!! | TATGGTATTGATTTAATACT+TGG | - | chr2_1:70571185-70571204 | Msa0221770:intron | 20.0% |
!! | ATTCCCAATAAAAATTATGT+CGG | - | chr2_1:70571299-70571318 | Msa0221770:CDS | 20.0% |
!!! | TTTAGGATTCATTTTAACAT+TGG | - | chr2_1:70571412-70571431 | Msa0221770:CDS | 20.0% |
! | TTCAAATCAAAAGCAGAAAA+CGG | + | chr2_1:70568100-70568119 | None:intergenic | 25.0% |
!!! | AATTGTTTTTTGTGTTGTGT+AGG | - | chr2_1:70568142-70568161 | Msa0221770:CDS | 25.0% |
!!! | CAATGTTCTTTGGTTTTATA+TGG | - | chr2_1:70568306-70568325 | Msa0221770:intron | 25.0% |
!! | AAGCAGTTAATAATGAGTTT+TGG | - | chr2_1:70568682-70568701 | Msa0221770:intron | 25.0% |
! | ATTGACATCAACATTAACAT+CGG | + | chr2_1:70568811-70568830 | None:intergenic | 25.0% |
! | ATCAATAGTGTCATATCTTA+CGG | - | chr2_1:70568990-70569009 | Msa0221770:intron | 25.0% |
!! | AATGTATGTTTTCATGAAGT+AGG | - | chr2_1:70569059-70569078 | Msa0221770:intron | 25.0% |
! | TGAAGTAGGTAAACTTATTT+AGG | - | chr2_1:70569073-70569092 | Msa0221770:intron | 25.0% |
!!! | ATTTTGATCAGCACATAAAT+AGG | - | chr2_1:70569214-70569233 | Msa0221770:intron | 25.0% |
! | AAATCAAATGTATGATATGG+TGG | + | chr2_1:70569301-70569320 | None:intergenic | 25.0% |
!! | GCATTGAAAATTTTCTTCAA+CGG | + | chr2_1:70569496-70569515 | None:intergenic | 25.0% |
! | AGATCTTACAGAATCAAATA+TGG | + | chr2_1:70569612-70569631 | None:intergenic | 25.0% |
! | CACTTTATAAACACATTATC+AGG | + | chr2_1:70570477-70570496 | None:intergenic | 25.0% |
!! | CTGATAATGTGTTTATAAAG+TGG | - | chr2_1:70570475-70570494 | Msa0221770:intron | 25.0% |
! | GATAATGTGTTTATAAAGTG+GGG | - | chr2_1:70570477-70570496 | Msa0221770:intron | 25.0% |
! | ATAATGTGTTTATAAAGTGG+GGG | - | chr2_1:70570478-70570497 | Msa0221770:intron | 25.0% |
! | TTTCAAGCTATTAGAATTTG+GGG | + | chr2_1:70570551-70570570 | None:intergenic | 25.0% |
! | AAGAAGTCAAAAATATGGAA+AGG | - | chr2_1:70570792-70570811 | Msa0221770:intron | 25.0% |
! | TAAAAGAACTATGTTTCACA+GGG | + | chr2_1:70570834-70570853 | None:intergenic | 25.0% |
! | ATAAAAGAACTATGTTTCAC+AGG | + | chr2_1:70570835-70570854 | None:intergenic | 25.0% |
! | TCTGATAGTAACTTTATGTA+TGG | - | chr2_1:70570979-70570998 | Msa0221770:intron | 25.0% |
! | CAAAATGTAGTACAAAGTTA+CGG | + | chr2_1:70571012-70571031 | None:intergenic | 25.0% |
!! | GTAACTTTGTACTACATTTT+GGG | - | chr2_1:70571011-70571030 | Msa0221770:intron | 25.0% |
!! | TCTTTTACTTCTGTTACTAA+TGG | - | chr2_1:70571066-70571085 | Msa0221770:intron | 25.0% |
!! | TTTTGTCTCTTCACTAAATA+TGG | + | chr2_1:70571140-70571159 | None:intergenic | 25.0% |
!! | AGACCGACATAATTTTTATT+GGG | + | chr2_1:70571305-70571324 | None:intergenic | 25.0% |
!! | AAGACCGACATAATTTTTAT+TGG | + | chr2_1:70571306-70571325 | None:intergenic | 25.0% |
! | TGTTAAAATGAATCCTAAAG+TGG | + | chr2_1:70571411-70571430 | None:intergenic | 25.0% |
! | TTTAACATTGGAAATCATCA+AGG | - | chr2_1:70571424-70571443 | Msa0221770:CDS | 25.0% |
! | TTAACATTGGAAATCATCAA+GGG | - | chr2_1:70571425-70571444 | Msa0221770:CDS | 25.0% |
AATAATCGAGGAAAAGTTAC+AGG | - | chr2_1:70568376-70568395 | Msa0221770:intron | 30.0% | |
!! | GCAAACTATTCTGTTTTTCT+TGG | + | chr2_1:70568494-70568513 | None:intergenic | 30.0% |
!!! | AATAATGAGTTTTGGATTCG+TGG | - | chr2_1:70568690-70568709 | Msa0221770:intron | 30.0% |
TTGACATCAACATTAACATC+GGG | + | chr2_1:70568810-70568829 | None:intergenic | 30.0% | |
GTTAATGTTGATGTCAATGT+TGG | - | chr2_1:70568813-70568832 | Msa0221770:intron | 30.0% | |
ACAAAAGGTTGTTCATGTAT+CGG | + | chr2_1:70568876-70568895 | None:intergenic | 30.0% | |
!!! | ATGCTTTTTTTCTGCAATCT+GGG | - | chr2_1:70568945-70568964 | Msa0221770:intron | 30.0% |
!! | TGTGTCAACATTTGATTTGA+TGG | - | chr2_1:70569031-70569050 | Msa0221770:intron | 30.0% |
! | GTGCTGATCAAAATTTCAAA+AGG | + | chr2_1:70569208-70569227 | None:intergenic | 30.0% |
AGTACTTTCAAAACTCAAGA+TGG | + | chr2_1:70569253-70569272 | None:intergenic | 30.0% | |
TATGTCTACAATGATTGTAG+CGG | + | chr2_1:70569380-70569399 | None:intergenic | 30.0% | |
TACAGAATCAAATATGGATG+AGG | + | chr2_1:70569606-70569625 | None:intergenic | 30.0% | |
AAATATGGAAGATGCTGAAA+CGG | + | chr2_1:70569991-70570010 | None:intergenic | 30.0% | |
! | TTGTTGTTACATTCTGTTCT+GGG | + | chr2_1:70569722-70569741 | None:intergenic | 30.0% |
!! | TTTGTTGTTACATTCTGTTC+TGG | + | chr2_1:70569723-70569742 | None:intergenic | 30.0% |
GTTACGATGTAACAACATTA+AGG | - | chr2_1:70569783-70569802 | Msa0221770:intron | 30.0% | |
! | TGTTGGTTGTGAAACAAATA+TGG | - | chr2_1:70569976-70569995 | Msa0221770:intron | 30.0% |
! | AATCGAGAAAACTTTTCTGA+AGG | - | chr2_1:70570021-70570040 | Msa0221770:intron | 30.0% |
ATAAGAATCAAATATGGACG+AGG | - | chr2_1:70570174-70570193 | Msa0221770:intron | 30.0% | |
ATCATTGTAGACATACTTGT+TGG | + | chr2_1:70570323-70570342 | None:intergenic | 30.0% | |
AAGTATGTCTACAATGATTG+TGG | - | chr2_1:70570325-70570344 | Msa0221770:intron | 30.0% | |
!! | AAATATGCGCTGTATTTTTG+AGG | - | chr2_1:70570616-70570635 | Msa0221770:intron | 30.0% |
!!! | ATTTTTGACTTCTTGCTTGA+AGG | + | chr2_1:70570786-70570805 | None:intergenic | 30.0% |
CAAGCAAGAAGTCAAAAATA+TGG | - | chr2_1:70570787-70570806 | Msa0221770:intron | 30.0% | |
CTTATTCTTTCCCTCAAAAA+TGG | - | chr2_1:70570865-70570884 | Msa0221770:intron | 30.0% | |
AGCTACAAAATTTGTATGCT+TGG | + | chr2_1:70570954-70570973 | None:intergenic | 30.0% | |
! | GCATACAAATTTTGTAGCTA+TGG | - | chr2_1:70570955-70570974 | Msa0221770:intron | 30.0% |
! | CGTAACTTTGTACTACATTT+TGG | - | chr2_1:70571010-70571029 | Msa0221770:intron | 30.0% |
AAACCAACATTTCCATCATA+TGG | - | chr2_1:70571157-70571176 | Msa0221770:CDS | 30.0% | |
GATTTAATACTTGGCTGTAA+TGG | - | chr2_1:70571194-70571213 | Msa0221770:intron | 30.0% | |
TTATTGGGAATTAAAGCTTG+TGG | + | chr2_1:70571290-70571309 | None:intergenic | 30.0% | |
ATCTGTAGATTGTGAAATTG+TGG | - | chr2_1:70571558-70571577 | Msa0221770:CDS | 30.0% | |
TAACAGAGATGAGAAGGATT+CGG | - | chr2_1:70567773-70567792 | Msa0221770:three_prime_UTR | 35.0% | |
ATCTTCTGATTCTTCTGTGA+CGG | - | chr2_1:70567858-70567877 | Msa0221770:CDS | 35.0% | |
!!! | GTTTTTTGTGTTGTGTAGGT+TGG | - | chr2_1:70568146-70568165 | Msa0221770:CDS | 35.0% |
ACAAAATACCTGTAGACCAT+CGG | + | chr2_1:70568243-70568262 | None:intergenic | 35.0% | |
ATGTAGTCAGCAATGTTCTT+TGG | - | chr2_1:70568296-70568315 | Msa0221770:intron | 35.0% | |
ATGTTGATGTCAATGTTGGT+AGG | - | chr2_1:70568817-70568836 | Msa0221770:intron | 35.0% | |
! | GATACATGAACAACCTTTTG+TGG | - | chr2_1:70568875-70568894 | Msa0221770:intron | 35.0% |
!!! | GATGCTTTTTTTCTGCAATC+TGG | - | chr2_1:70568944-70568963 | Msa0221770:intron | 35.0% |
AATAGTGTCATATCTTACGG+AGG | - | chr2_1:70568993-70569012 | Msa0221770:intron | 35.0% | |
TGCCAATGGCAAAACAATTA+TGG | - | chr2_1:70569158-70569177 | Msa0221770:intron | 35.0% | |
!! | GACCATAATTGTTTTGCCAT+TGG | + | chr2_1:70569163-70569182 | None:intergenic | 35.0% |
GATCAGCACATAAATAGGTA+TGG | - | chr2_1:70569219-70569238 | Msa0221770:intron | 35.0% | |
!!! | GAGTTTTGAAAGTACTCGAT+TGG | - | chr2_1:70569257-70569276 | Msa0221770:intron | 35.0% |
! | TTCAATGCTTTTCTTCACCA+AGG | - | chr2_1:70569508-70569527 | Msa0221770:intron | 35.0% |
ATGATCCAAGGTTCAAAAGT+AGG | + | chr2_1:70569579-70569598 | None:intergenic | 35.0% | |
! | TGTTGGCTGTGAAACAAATA+TGG | + | chr2_1:70569677-70569696 | None:intergenic | 35.0% |
TGTTGTTACATTCTGTTCTG+GGG | + | chr2_1:70569721-70569740 | None:intergenic | 35.0% | |
GTAACAACAAATTCACAGCA+AGG | - | chr2_1:70569732-70569751 | Msa0221770:intron | 35.0% | |
!! | TTTTTCAACCTTTGATTCGC+AGG | + | chr2_1:70569869-70569888 | None:intergenic | 35.0% |
TATTTACACGCTGTATGTGT+TGG | - | chr2_1:70569959-70569978 | Msa0221770:intron | 35.0% | |
GGTCTTCCAAGAATCAAATA+TGG | - | chr2_1:70570042-70570061 | Msa0221770:intron | 35.0% | |
ATCATCGTAGACATAGTTGT+TGG | + | chr2_1:70570254-70570273 | None:intergenic | 35.0% | |
! | GATTGTGTCTTTTCTTCAAC+AGG | - | chr2_1:70570271-70570290 | Msa0221770:intron | 35.0% |
AGGAAGAAGAAGAAAACAAG+AGG | - | chr2_1:70570291-70570310 | Msa0221770:intron | 35.0% | |
GGAAGAAGAAGAAAACAAGA+GGG | - | chr2_1:70570292-70570311 | Msa0221770:intron | 35.0% | |
TTTCCCAATAGATCTTGGAT+AGG | + | chr2_1:70570382-70570401 | None:intergenic | 35.0% | |
! | AGCTATTAGAATTTGGGGTT+GGG | + | chr2_1:70570546-70570565 | None:intergenic | 35.0% |
! | AAGCTATTAGAATTTGGGGT+TGG | + | chr2_1:70570547-70570566 | None:intergenic | 35.0% |
ATTGTTCTTTCCATTGCTAG+AGG | - | chr2_1:70570570-70570589 | Msa0221770:intron | 35.0% | |
TGTGGACATGTACATAATGT+AGG | + | chr2_1:70570724-70570743 | None:intergenic | 35.0% | |
TACATTATGTACATGTCCAC+AGG | - | chr2_1:70570723-70570742 | Msa0221770:intron | 35.0% | |
CTGAAAATCACGAACTACTT+CGG | + | chr2_1:70570749-70570768 | None:intergenic | 35.0% | |
TTTCCCTCAAAAATGGTACT+CGG | - | chr2_1:70570872-70570891 | Msa0221770:intron | 35.0% | |
!! | TAACCGAGTACCATTTTTGA+GGG | + | chr2_1:70570878-70570897 | None:intergenic | 35.0% |
!! | ATAACCGAGTACCATTTTTG+AGG | + | chr2_1:70570879-70570898 | None:intergenic | 35.0% |
!! | TTGGCTGTAATGGATTCATA+TGG | - | chr2_1:70571204-70571223 | Msa0221770:intron | 35.0% |
!! | TGGCTGTAATGGATTCATAT+GGG | - | chr2_1:70571205-70571224 | Msa0221770:intron | 35.0% |
!! | TGTAATGGATTCATATGGGT+CGG | - | chr2_1:70571209-70571228 | Msa0221770:intron | 35.0% |
ATCTTCTATCATGTCATCTC+TGG | + | chr2_1:70571249-70571268 | None:intergenic | 35.0% | |
TTAAAGCTTGTGGATCAGAT+TGG | + | chr2_1:70571280-70571299 | None:intergenic | 35.0% | |
CATATGTATTCACTTGTCTC+TGG | + | chr2_1:70571359-70571378 | None:intergenic | 35.0% | |
AGACAAGTGAATACATATGC+AGG | - | chr2_1:70571360-70571379 | Msa0221770:intron | 35.0% | |
GACAAGTGAATACATATGCA+GGG | - | chr2_1:70571361-70571380 | Msa0221770:intron | 35.0% | |
!! | GTTAGAGTATTGTCCACTTT+AGG | - | chr2_1:70571395-70571414 | Msa0221770:CDS | 35.0% |
!! | TGGTTCTGAATTCTATGTTC+TGG | - | chr2_1:70571496-70571515 | Msa0221770:CDS | 35.0% |
!! | ATCTTCATGGTTGATAGGGA+TGG | + | chr2_1:70567893-70567912 | None:intergenic | 40.0% |
ATAACAATGTCACCAGCCTT+GGG | + | chr2_1:70568036-70568055 | None:intergenic | 40.0% | |
TATAACAATGTCACCAGCCT+TGG | + | chr2_1:70568037-70568056 | None:intergenic | 40.0% | |
AAGGCTGGTGACATTGTTAT+AGG | - | chr2_1:70568036-70568055 | Msa0221770:CDS | 40.0% | |
AGGCTGGTGACATTGTTATA+GGG | - | chr2_1:70568037-70568056 | Msa0221770:CDS | 40.0% | |
CAAAATACCTGTAGACCATC+GGG | + | chr2_1:70568242-70568261 | None:intergenic | 40.0% | |
! | ATTCGTGGTGAATCGATTCT+AGG | - | chr2_1:70568705-70568724 | Msa0221770:intron | 40.0% |
TAGGCTGCAATTGTAGAAGA+TGG | - | chr2_1:70568724-70568743 | Msa0221770:intron | 40.0% | |
AGGCTGCAATTGTAGAAGAT+GGG | - | chr2_1:70568725-70568744 | Msa0221770:intron | 40.0% | |
AAATCCCCAAATATGTCCCA+AGG | + | chr2_1:70568758-70568777 | None:intergenic | 40.0% | |
! | TGGGACATATTTGGGGATTT+TGG | - | chr2_1:70568758-70568777 | Msa0221770:intron | 40.0% |
! | GGGACATATTTGGGGATTTT+GGG | - | chr2_1:70568759-70568778 | Msa0221770:intron | 40.0% |
AAAGGTTGTTCATGTATCGG+AGG | + | chr2_1:70568873-70568892 | None:intergenic | 40.0% | |
ATCATGTGCATCACCACAAA+AGG | + | chr2_1:70568891-70568910 | None:intergenic | 40.0% | |
TGTCATATCTTACGGAGGTT+AGG | - | chr2_1:70568998-70569017 | Msa0221770:intron | 40.0% | |
GTCATATCTTACGGAGGTTA+GGG | - | chr2_1:70568999-70569018 | Msa0221770:intron | 40.0% | |
TCATATCTTACGGAGGTTAG+GGG | - | chr2_1:70569000-70569019 | Msa0221770:intron | 40.0% | |
AAGTAGGCTTCCAATGAACT+CGG | + | chr2_1:70569563-70569582 | None:intergenic | 40.0% | |
ACATCGTAACTGTGAATCAG+AGG | + | chr2_1:70569773-70569792 | None:intergenic | 40.0% | |
TTGAAACCGTGACAAAGTGA+CGG | + | chr2_1:70569820-70569839 | None:intergenic | 40.0% | |
ACTTTGTACCTGCGAATCAA+AGG | - | chr2_1:70569858-70569877 | Msa0221770:intron | 40.0% | |
! | TTGTGCACTTCGTTCTGTTT+TGG | - | chr2_1:70569929-70569948 | Msa0221770:intron | 40.0% |
! | TGTGCACTTCGTTCTGTTTT+GGG | - | chr2_1:70569930-70569949 | Msa0221770:intron | 40.0% |
ATGGAAGATGCTGAAACGAA+AGG | - | chr2_1:70569995-70570014 | Msa0221770:intron | 40.0% | |
CCTCGTCCATATTTGATTCT+TGG | + | chr2_1:70570051-70570070 | None:intergenic | 40.0% | |
CCAAGAATCAAATATGGACG+AGG | - | chr2_1:70570048-70570067 | Msa0221770:intron | 40.0% | |
! | AAGTAGCCTTACAACGAACT+CGG | - | chr2_1:70570091-70570110 | Msa0221770:intron | 40.0% |
!! | CAGTCTTGTTATTGCAAGCT+TGG | - | chr2_1:70570348-70570367 | Msa0221770:intron | 40.0% |
TTATTGCAAGCTTGGCATCA+AGG | - | chr2_1:70570356-70570375 | Msa0221770:intron | 40.0% | |
AAGGCCTATCCAAGATCTAT+TGG | - | chr2_1:70570375-70570394 | Msa0221770:intron | 40.0% | |
AGGCCTATCCAAGATCTATT+GGG | - | chr2_1:70570376-70570395 | Msa0221770:intron | 40.0% | |
CTATTGGGAAACCTGCTATT+AGG | - | chr2_1:70570391-70570410 | Msa0221770:intron | 40.0% | |
GTCTCACGTTGGATAAGATA+TGG | - | chr2_1:70570451-70570470 | Msa0221770:intron | 40.0% | |
CCTTACAAAGTATGCTGGTA+AGG | + | chr2_1:70570513-70570532 | None:intergenic | 40.0% | |
CCTTACCAGCATACTTTGTA+AGG | - | chr2_1:70570510-70570529 | Msa0221770:intron | 40.0% | |
CTCAACCTTACAAAGTATGC+TGG | + | chr2_1:70570518-70570537 | None:intergenic | 40.0% | |
!! | TATGCGCTGTATTTTTGAGG+AGG | - | chr2_1:70570619-70570638 | Msa0221770:intron | 40.0% |
! | GTTCGTGATTTTCAGCATGA+TGG | - | chr2_1:70570754-70570773 | Msa0221770:intron | 40.0% |
CCATTTGTACTGTCTCATAC+TGG | + | chr2_1:70570911-70570930 | None:intergenic | 40.0% | |
CCAGTATGAGACAGTACAAA+TGG | - | chr2_1:70570908-70570927 | Msa0221770:intron | 40.0% | |
TGTATGCTTGGATCACAAAC+AGG | + | chr2_1:70570942-70570961 | None:intergenic | 40.0% | |
GTTGTATTGCAGCTTAGTAC+TGG | - | chr2_1:70571095-70571114 | Msa0221770:intron | 40.0% | |
! | GCTCCATATGATGGAAATGT+TGG | + | chr2_1:70571163-70571182 | None:intergenic | 40.0% |
TTCCATCATATGGAGCAGTA+TGG | - | chr2_1:70571167-70571186 | Msa0221770:CDS | 40.0% | |
TACCATACTGCTCCATATGA+TGG | + | chr2_1:70571172-70571191 | None:intergenic | 40.0% | |
! | TGTTCTGGTTGCTGAAAAAG+AGG | - | chr2_1:70571511-70571530 | Msa0221770:CDS | 40.0% |
TTGCTGAAAAAGAGGCAGAA+AGG | - | chr2_1:70571519-70571538 | Msa0221770:CDS | 40.0% | |
CGAGTGTAACAGAGATGAGA+AGG | - | chr2_1:70567767-70567786 | Msa0221770:three_prime_UTR | 45.0% | |
TCAGAAGATCCGTCTACAGA+AGG | - | chr2_1:70567813-70567832 | Msa0221770:CDS | 45.0% | |
! | CGCGATCTTCATGGTTGATA+GGG | + | chr2_1:70567897-70567916 | None:intergenic | 45.0% |
ACGCGATCTTCATGGTTGAT+AGG | + | chr2_1:70567898-70567917 | None:intergenic | 45.0% | |
AACTTCGCCATTGAGATCAG+CGG | + | chr2_1:70567938-70567957 | None:intergenic | 45.0% | |
GAAGTTGTTGCTACTCTCTG+TGG | - | chr2_1:70567952-70567971 | Msa0221770:CDS | 45.0% | |
! | TGTTATAGGGCGTGTCATTG+AGG | - | chr2_1:70568050-70568069 | Msa0221770:CDS | 45.0% |
!! | TGTAGGTTGGTCAGAATCGT+TGG | - | chr2_1:70568159-70568178 | Msa0221770:CDS | 45.0% |
TGGTCAGAATCGTTGGAGAT+TGG | - | chr2_1:70568166-70568185 | Msa0221770:CDS | 45.0% | |
TCTGCTATGAATATGCCCGA+TGG | - | chr2_1:70568224-70568243 | Msa0221770:CDS | 45.0% | |
ACAGTGCCTTGGGACATATT+TGG | - | chr2_1:70568749-70568768 | Msa0221770:intron | 45.0% | |
CAGTGCCTTGGGACATATTT+GGG | - | chr2_1:70568750-70568769 | Msa0221770:intron | 45.0% | |
AGTGCCTTGGGACATATTTG+GGG | - | chr2_1:70568751-70568770 | Msa0221770:intron | 45.0% | |
TTTGGGAAGCTCTTAGTTGC+AGG | - | chr2_1:70568776-70568795 | Msa0221770:intron | 45.0% | |
TTGGGAAGCTCTTAGTTGCA+GGG | - | chr2_1:70568777-70568796 | Msa0221770:intron | 45.0% | |
! | TTCTGCAATCTGGGACTGAT+TGG | - | chr2_1:70568954-70568973 | Msa0221770:intron | 45.0% |
! | TCTGCAATCTGGGACTGATT+GGG | - | chr2_1:70568955-70568974 | Msa0221770:intron | 45.0% |
!! | TCTGGGACTGATTGGGTTTT+TGG | - | chr2_1:70568962-70568981 | Msa0221770:intron | 45.0% |
! | CTGGGACTGATTGGGTTTTT+GGG | - | chr2_1:70568963-70568982 | Msa0221770:intron | 45.0% |
! | TGGGACTGATTGGGTTTTTG+GGG | - | chr2_1:70568964-70568983 | Msa0221770:intron | 45.0% |
TGAGGGGTTACAAATGCCAA+TGG | - | chr2_1:70569144-70569163 | Msa0221770:intron | 45.0% | |
TCTTCAACAGCAGCTCAAAC+AGG | + | chr2_1:70569432-70569451 | None:intergenic | 45.0% | |
GCAGCAACAAGAACAGCAAA+AGG | + | chr2_1:70569471-70569490 | None:intergenic | 45.0% | |
!! | TTCACCAAGGCTTTGAAGTG+AGG | - | chr2_1:70569521-70569540 | Msa0221770:intron | 45.0% |
!! | CTTTGAAGTGAGGCTGAGAT+AGG | - | chr2_1:70569531-70569550 | Msa0221770:intron | 45.0% |
!! | GGAAGCCTACTTTTGAACCT+TGG | - | chr2_1:70569571-70569590 | Msa0221770:intron | 45.0% |
GGATGAGGCTAAATGATCCA+AGG | + | chr2_1:70569591-70569610 | None:intergenic | 45.0% | |
TGAAACGGAAGGAAGAATCG+AGG | + | chr2_1:70569647-70569666 | None:intergenic | 45.0% | |
ATGGAAGATGCTGAAACGGA+AGG | + | chr2_1:70569658-70569677 | None:intergenic | 45.0% | |
ATGTTTCCAGCTGTAGGTGT+TGG | + | chr2_1:70569694-70569713 | None:intergenic | 45.0% | |
! | CTGAAACCGTCACTTTGTCA+CGG | - | chr2_1:70569811-70569830 | Msa0221770:intron | 45.0% |
! | GTGCACTTCGTTCTGTTTTG+GGG | - | chr2_1:70569931-70569950 | Msa0221770:intron | 45.0% |
! | GTAAGGCTACTTTCGAACCT+TGG | + | chr2_1:70570083-70570102 | None:intergenic | 45.0% |
! | AGTAGCCTTACAACGAACTC+GGG | - | chr2_1:70570092-70570111 | Msa0221770:intron | 45.0% |
!! | TTCACCAAGGCTTTGAAGTG+AGG | + | chr2_1:70569521-70569540 | None:intergenic | 45.0% |
AAAGCCTTGGTGAAGCAAAC+AGG | - | chr2_1:70570130-70570149 | Msa0221770:intron | 45.0% | |
AAGCCTTGGTGAAGCAAACA+GGG | - | chr2_1:70570131-70570150 | Msa0221770:intron | 45.0% | |
TTTCCCTGTTTGCTTCACCA+AGG | + | chr2_1:70570137-70570156 | None:intergenic | 45.0% | |
GCAGGTTTCCCAATAGATCT+TGG | + | chr2_1:70570387-70570406 | None:intergenic | 45.0% | |
CTAGAGCATGACCTAATAGC+AGG | + | chr2_1:70570405-70570424 | None:intergenic | 45.0% | |
TGAGACTCTTCAACACAAGC+AGG | + | chr2_1:70570437-70570456 | None:intergenic | 45.0% | |
TGTGTTGAAGAGTCTCACGT+TGG | - | chr2_1:70570440-70570459 | Msa0221770:intron | 45.0% | |
CAAAGTATGCTGGTAAGGTG+AGG | + | chr2_1:70570508-70570527 | None:intergenic | 45.0% | |
GTACATCAAGATTCGCAGAG+AGG | + | chr2_1:70571466-70571485 | None:intergenic | 45.0% | |
CTTGATGTACACGACATGCT+TGG | - | chr2_1:70571476-70571495 | Msa0221770:CDS | 45.0% | |
GTTCCAGTGCCTTCTGTAGA+CGG | + | chr2_1:70567825-70567844 | None:intergenic | 50.0% | |
CATGAAGATCGCGTGCTCAA+GGG | - | chr2_1:70567904-70567923 | Msa0221770:CDS | 50.0% | |
CATGGAACCGCTGATCTCAA+TGG | - | chr2_1:70567928-70567947 | Msa0221770:CDS | 50.0% | |
! | TGCTACTCTCTGTGGTGTTG+TGG | - | chr2_1:70567960-70567979 | Msa0221770:CDS | 50.0% |
TCAAGGTACAAACCCAAGGC+TGG | - | chr2_1:70568021-70568040 | Msa0221770:CDS | 50.0% | |
GAATATGCCCGATGGTCTAC+AGG | - | chr2_1:70568232-70568251 | Msa0221770:CDS | 50.0% | |
AGAAGATGGGAACAGTGCCT+TGG | - | chr2_1:70568738-70568757 | Msa0221770:intron | 50.0% | |
GAAGATGGGAACAGTGCCTT+GGG | - | chr2_1:70568739-70568758 | Msa0221770:intron | 50.0% | |
TAGGATCGCGAGTTACCTTG+TGG | - | chr2_1:70568836-70568855 | Msa0221770:intron | 50.0% | |
AGGATCGCGAGTTACCTTGT+GGG | - | chr2_1:70568837-70568856 | Msa0221770:intron | 50.0% | |
GAGGATCAAGCAATCCCACA+AGG | + | chr2_1:70568854-70568873 | None:intergenic | 50.0% | |
!! | GGGACTGATTGGGTTTTTGG+GGG | - | chr2_1:70568965-70568984 | Msa0221770:intron | 50.0% |
!! | GGACTGATTGGGTTTTTGGG+GGG | - | chr2_1:70568966-70568985 | Msa0221770:intron | 50.0% |
CAACAGCAGCTCAAACAGGA+GGG | + | chr2_1:70569428-70569447 | None:intergenic | 50.0% | |
TCAACAGCAGCTCAAACAGG+AGG | + | chr2_1:70569429-70569448 | None:intergenic | 50.0% | |
TCAGCCTCACTTCAAAGCCT+TGG | + | chr2_1:70570117-70570136 | None:intergenic | 50.0% | |
AGTGAGGCTGAGATAGGTTG+AGG | - | chr2_1:70569537-70569556 | Msa0221770:intron | 50.0% | |
! | TAGGTTGAGGCCGAGTTCAT+TGG | - | chr2_1:70569550-70569569 | Msa0221770:intron | 50.0% |
!! | AAGGCTTTGAAGTGAGGCTG+AGG | + | chr2_1:70569527-70569546 | None:intergenic | 50.0% |
TCAGCCTCACTTCAAAGCCT+TGG | - | chr2_1:70570117-70570136 | Msa0221770:intron | 50.0% | |
CTCTTCAACACAAGCAGGAC+TGG | + | chr2_1:70570432-70570451 | None:intergenic | 50.0% | |
CTTTCCATTGCTAGAGGCGA+AGG | - | chr2_1:70570576-70570595 | Msa0221770:intron | 50.0% | |
! | GATCCGTCTACAGAAGGCAC+TGG | - | chr2_1:70567819-70567838 | Msa0221770:CDS | 55.0% |
CCTTGAGCACGCGATCTTCA+TGG | + | chr2_1:70567906-70567925 | None:intergenic | 55.0% | |
CCATGAAGATCGCGTGCTCA+AGG | - | chr2_1:70567903-70567922 | Msa0221770:CDS | 55.0% | |
GCGCTCAAGGTACAAACCCA+AGG | - | chr2_1:70568017-70568036 | Msa0221770:CDS | 55.0% | |
TCACAGCCAACACCTACAGC+TGG | - | chr2_1:70569685-70569704 | Msa0221770:intron | 55.0% | |
GGCTGCATGTTTCCAGCTGT+AGG | + | chr2_1:70569700-70569719 | None:intergenic | 55.0% | |
GGACGAGGCTACAGAATCCA+AGG | - | chr2_1:70570063-70570082 | Msa0221770:intron | 55.0% | |
TGAGGCCCGAGTTCGTTGTA+AGG | + | chr2_1:70570100-70570119 | None:intergenic | 55.0% | |
CTGTCCTTCGCCTCTAGCAA+TGG | + | chr2_1:70570583-70570602 | None:intergenic | 55.0% | |
TCACGAACTACTTCGGCCTG+TGG | + | chr2_1:70570742-70570761 | None:intergenic | 55.0% | |
GATCGCGTGCTCAAGGGACA+TGG | - | chr2_1:70567910-70567929 | Msa0221770:CDS | 60.0% | |
GTGTGCGTGCTTTGCGCTCA+AGG | - | chr2_1:70568004-70568023 | Msa0221770:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 70567761 | 70571601 | 70567761 | ID=Msa0221770;Name=Msa0221770 |
chr2_1 | mRNA | 70567761 | 70571601 | 70567761 | ID=Msa0221770-mRNA-1;Parent=Msa0221770;Name=Msa0221770-mRNA-1;_AED=0.18;_eAED=0.18;_QI=20|0.5|0.6|1|0.5|0.6|5|36|292 |
chr2_1 | exon | 70567761 | 70568255 | 70567761 | ID=Msa0221770-mRNA-1:exon:20220;Parent=Msa0221770-mRNA-1 |
chr2_1 | exon | 70568549 | 70568617 | 70568549 | ID=Msa0221770-mRNA-1:exon:20219;Parent=Msa0221770-mRNA-1 |
chr2_1 | exon | 70571109 | 70571198 | 70571109 | ID=Msa0221770-mRNA-1:exon:20218;Parent=Msa0221770-mRNA-1 |
chr2_1 | exon | 70571291 | 70571336 | 70571291 | ID=Msa0221770-mRNA-1:exon:20217;Parent=Msa0221770-mRNA-1 |
chr2_1 | exon | 70571367 | 70571601 | 70571367 | ID=Msa0221770-mRNA-1:exon:20216;Parent=Msa0221770-mRNA-1 |
chr2_1 | five_prime_UTR | 70571582 | 70571601 | 70571582 | ID=Msa0221770-mRNA-1:five_prime_utr;Parent=Msa0221770-mRNA-1 |
chr2_1 | CDS | 70571367 | 70571581 | 70571367 | ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1 |
chr2_1 | CDS | 70571291 | 70571336 | 70571291 | ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1 |
chr2_1 | CDS | 70571109 | 70571198 | 70571109 | ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1 |
chr2_1 | CDS | 70568549 | 70568617 | 70568549 | ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1 |
chr2_1 | CDS | 70567797 | 70568255 | 70567797 | ID=Msa0221770-mRNA-1:cds;Parent=Msa0221770-mRNA-1 |
chr2_1 | three_prime_UTR | 70567761 | 70567796 | 70567761 | ID=Msa0221770-mRNA-1:three_prime_utr;Parent=Msa0221770-mRNA-1 |
Gene Sequence |
Protein sequence |