AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1000900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000900 MtrunA17_Chr3g0092521 31.667 180 113 1 64 243 50 219 8.52e-29 110
Msa1000900 MtrunA17_Chr4g0060621 30.556 180 115 1 64 243 47 216 5.17e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1000900 AT1G74560.1 35.829 187 104 5 64 246 52 226 5.23e-30 113
Msa1000900 AT1G18800.1 32.620 187 108 3 64 245 48 221 1.50e-27 107
Msa1000900 AT1G74560.3 35.593 177 98 5 64 236 52 216 4.48e-26 103

Find 70 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCAACCTCTTTGGCTTCT+TGG 0.078338 6_4:-84266249 None:intergenic
CTCCTTGATAATTTCAGATT+TGG 0.207017 6_4:-84266328 None:intergenic
GCCCTTGGGTCCAACCTCTT+TGG 0.250124 6_4:-84266257 None:intergenic
CTTTGGCTTCTTGGTCTTGA+AGG 0.252096 6_4:-84266240 None:intergenic
TCCTTGATAATTTCAGATTT+GGG 0.269572 6_4:-84266327 None:intergenic
ATATCATCAAATATGAAGTA+TGG 0.306582 6_4:+84268914 Msa1000900:CDS
GTAAAATTGTGAAATGTCTT+TGG 0.307808 6_4:+84269509 Msa1000900:three_prime_UTR
TTTGACCGATTTGGATATAA+AGG 0.307928 6_4:+84266949 Msa1000900:CDS
AAACATGAAGAAGGAGAAAA+AGG 0.310317 6_4:+84268187 Msa1000900:CDS
TCACTACGCTCATCACAAAT+AGG 0.313432 6_4:-84266759 None:intergenic
TAGTTTGATGAAACCATATC+AGG 0.324055 6_4:+84265714 Msa1000900:five_prime_UTR
GGACTTAGATCAGAAGTATA+TGG 0.327807 6_4:+84266725 Msa1000900:CDS
TTGTTGTAGCTTTAGCTTGT+TGG 0.338955 6_4:+84269592 Msa1000900:three_prime_UTR
GTGTTTGGGTGTGTCTGTTT+TGG 0.342106 6_4:+84269482 Msa1000900:three_prime_UTR
AACCCAACGGTACATCAAAA+AGG 0.344405 6_4:+84266377 Msa1000900:CDS
GCGTGAAAAGGAACGCAAAA+AGG 0.353626 6_4:+84268605 Msa1000900:CDS
AGTCCCTTCTCTCCGATTGC+AGG 0.363865 6_4:+84265846 Msa1000900:five_prime_UTR
TTATTAGAATGAATTCACTA+TGG 0.367890 6_4:+84269628 Msa1000900:three_prime_UTR
ACTCCCTTCTTAATTGCCCT+TGG 0.384026 6_4:-84266272 None:intergenic
CTCCCTTCTTAATTGCCCTT+GGG 0.387069 6_4:-84266271 None:intergenic
GATAATTTCAGATTTGGGTT+TGG 0.397512 6_4:-84266322 None:intergenic
GAATAAACTCACAAATGAAA+TGG 0.403761 6_4:-84268215 None:intergenic
TGTAGGATATTGAAGTGAAA+AGG 0.426228 6_4:+84266691 Msa1000900:intron
AATGTAACTTCTATCAATGT+TGG 0.436746 6_4:+84268163 Msa1000900:CDS
TGATCAGGCTGACGATGATC+AGG 0.446862 6_4:+84269315 Msa1000900:CDS
TGATCAGGCTGACGATGATC+AGG 0.446862 6_4:+84269330 Msa1000900:CDS
TTGGAATTATGTAAACTTGA+GGG 0.450283 6_4:+84269528 Msa1000900:three_prime_UTR
ATCAGAAGTATATGGAGATA+AGG 0.454949 6_4:+84266733 Msa1000900:CDS
TGAACTCATTGAAGTTGAAA+AGG 0.455566 6_4:+84268557 Msa1000900:CDS
ATGAACCATCCTAAATTGAA+AGG 0.459117 6_4:+84266923 Msa1000900:CDS
AGTTGAAAAGGAAGTTGAAA+AGG 0.466864 6_4:+84268569 Msa1000900:CDS
ATGAATGCAGCTTCTTTGAC+TGG 0.478327 6_4:+84268713 Msa1000900:intron
GTGGCAGGATGACGATGATC+AGG 0.479090 6_4:+84269300 Msa1000900:intron
TCATACCTTTATATCCAAAT+CGG 0.479930 6_4:-84266954 None:intergenic
TGAAAATTCATACCTGCAAT+CGG 0.485397 6_4:-84265858 None:intergenic
AACGTTTGTGTGGTCCGACT+TGG 0.490094 6_4:+84269556 Msa1000900:three_prime_UTR
TGAAATTATCAAGGAGGAAG+AGG 0.493893 6_4:+84266335 Msa1000900:CDS
TGAACCATCCTAAATTGAAA+GGG 0.496044 6_4:+84266924 Msa1000900:CDS
GGACCCAAGGGCAATTAAGA+AGG 0.496369 6_4:+84266268 Msa1000900:CDS
GACCAAGAAGCCAAAGAGGT+TGG 0.505561 6_4:+84266247 Msa1000900:CDS
ACCCAAATCTGAAATTATCA+AGG 0.512702 6_4:+84266326 Msa1000900:CDS
ATGAGTTGATTCATAAGAGT+GGG 0.515180 6_4:+84268749 Msa1000900:CDS
TGCATACCCTCATTGAGCAC+TGG 0.517562 6_4:-84269359 None:intergenic
AAAACCCTTTCAATTTAGGA+TGG 0.527244 6_4:-84266928 None:intergenic
AGCCAAAGAGGTTGGACCCA+AGG 0.527253 6_4:+84266255 Msa1000900:CDS
TACACTCCGAAGAGAGAGAA+TGG 0.535530 6_4:+84266215 Msa1000900:intron
AATGTTGGAAAACATGAAGA+AGG 0.537937 6_4:+84268178 Msa1000900:CDS
CATACCTGCAATCGGAGAGA+AGG 0.538257 6_4:-84265850 None:intergenic
GCCAAAGAGGTTGGACCCAA+GGG 0.538608 6_4:+84266256 Msa1000900:CDS
TATCATCAAATATGAAGTAT+GGG 0.554315 6_4:+84268915 Msa1000900:CDS
TTTGGAATTATGTAAACTTG+AGG 0.556159 6_4:+84269527 Msa1000900:three_prime_UTR
CAGGCTGACGATGATCAGGC+TGG 0.559148 6_4:+84269334 Msa1000900:CDS
TATTAGAATGAATTCACTAT+GGG 0.561587 6_4:+84269629 Msa1000900:three_prime_UTR
ATACCTGCAATCGGAGAGAA+GGG 0.572763 6_4:-84265849 None:intergenic
TATGAAGTATGGGATGATCC+TGG 0.572981 6_4:+84268925 Msa1000900:CDS
AATGAGTTGATTCATAAGAG+TGG 0.578667 6_4:+84268748 Msa1000900:CDS
ATGATATGTTTAAAACCCAA+CGG 0.597676 6_4:+84266364 Msa1000900:CDS
GAGGGTATTTAACGTTTGTG+TGG 0.600443 6_4:+84269546 Msa1000900:three_prime_UTR
AGGGCAATTAAGAAGGGAGT+CGG 0.600587 6_4:+84266275 Msa1000900:CDS
TCAAGACCAAGAAGCCAAAG+AGG 0.603035 6_4:+84266243 Msa1000900:CDS
CTGGATCCAGTGCTCAATGA+GGG 0.603378 6_4:+84269353 Msa1000900:CDS
GACCCAAGGGCAATTAAGAA+GGG 0.608471 6_4:+84266269 Msa1000900:CDS
TAAGAGTGGGGATAGAGATG+AGG 0.623590 6_4:+84268762 Msa1000900:CDS
AACTAAAGCTAAAACCAAGT+CGG 0.635637 6_4:-84269570 None:intergenic
GTGTCTCAAAGAAACTGCGG+TGG 0.644095 6_4:+84268415 Msa1000900:CDS
GCTGGATCCAGTGCTCAATG+AGG 0.653277 6_4:+84269352 Msa1000900:CDS
ACATTGTAATAATAACGACC+AGG 0.675740 6_4:-84268943 None:intergenic
CAAATCTGAAATTATCAAGG+AGG 0.680108 6_4:+84266329 Msa1000900:CDS
TGAGTTGATTCATAAGAGTG+GGG 0.689070 6_4:+84268750 Msa1000900:CDS
TCAGTGTCTCAAAGAAACTG+CGG 0.729351 6_4:+84268412 Msa1000900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAAAAACATATATAT+TGG - chr6_4:84267755-84267774 None:intergenic 10.0%
!!! TCATTTAACTAAATAATTTT+AGG - chr6_4:84268285-84268304 None:intergenic 10.0%
!! AAAAGAATAAAAGAAAATAA+TGG - chr6_4:84269456-84269475 None:intergenic 10.0%
!!! ATTATTTTCTTTTATTCTTT+TGG + chr6_4:84269455-84269474 Msa1000900:intron 10.0%
!! GAAAATTAATAAATAGCTAA+TGG - chr6_4:84266412-84266431 None:intergenic 15.0%
!! GTTAAAACAAAACTAAATAT+AGG + chr6_4:84266461-84266480 Msa1000900:intron 15.0%
!! ATGAAATTGAAATAGAAAAA+AGG - chr6_4:84267721-84267740 None:intergenic 15.0%
!! GCAAATATCTATAAAATAAA+GGG - chr6_4:84268142-84268161 None:intergenic 15.0%
!! AGCAAATATCTATAAAATAA+AGG - chr6_4:84268143-84268162 None:intergenic 15.0%
!! ACAAAATAGTTAGTGAAATA+TGG - chr6_4:84265802-84265821 None:intergenic 20.0%
!! TTCATTCATTCTCTTTAATT+TGG + chr6_4:84265926-84265945 Msa1000900:intron 20.0%
!!! TCATTCATTCTCTTTAATTT+GGG + chr6_4:84265927-84265946 Msa1000900:intron 20.0%
!! GTAAACAAAAGTGAAATATT+GGG - chr6_4:84266160-84266179 None:intergenic 20.0%
!! AGTAAACAAAAGTGAAATAT+TGG - chr6_4:84266161-84266180 None:intergenic 20.0%
!! AAACAAAACTAAATATAGGT+TGG + chr6_4:84266465-84266484 Msa1000900:intron 20.0%
!! TCTTATGAATTATCTGTAAT+TGG + chr6_4:84266611-84266630 Msa1000900:intron 20.0%
!!! TAAAAAAGATTCCTTTTTTC+TGG + chr6_4:84266787-84266806 Msa1000900:CDS 20.0%
!!! AAGTGTTGTAAATTTCATTT+AGG + chr6_4:84266840-84266859 Msa1000900:intron 20.0%
!!! ATATAAAGGTATGACTTTTT+TGG + chr6_4:84266963-84266982 Msa1000900:intron 20.0%
!! TTAAACAGCCAATATTATTA+AGG + chr6_4:84267010-84267029 Msa1000900:intron 20.0%
!!! AATATTTTCTCTCAAAACTT+GGG + chr6_4:84267414-84267433 Msa1000900:intron 20.0%
!! TCATATTGTCCATAAATATA+GGG + chr6_4:84267613-84267632 Msa1000900:intron 20.0%
!! ATTTAATTGCCCTATATTTA+TGG - chr6_4:84267625-84267644 None:intergenic 20.0%
!!! GTTTTTTTTTTCTCTTATGT+TGG + chr6_4:84267763-84267782 Msa1000900:intron 20.0%
!! TTAACATAAGATTCTATTAG+AGG - chr6_4:84268520-84268539 None:intergenic 20.0%
!! ATATCATCAAATATGAAGTA+TGG + chr6_4:84268914-84268933 Msa1000900:CDS 20.0%
!! TATCATCAAATATGAAGTAT+GGG + chr6_4:84268915-84268934 Msa1000900:CDS 20.0%
!!! AGCTAAGGTTTTAATATAAT+TGG - chr6_4:84269146-84269165 None:intergenic 20.0%
!!! CATTTTATTTACTATAGCTA+AGG - chr6_4:84269161-84269180 None:intergenic 20.0%
!! AATGAACAATAAAGATGTTA+TGG + chr6_4:84269241-84269260 Msa1000900:intron 20.0%
!! TTATTAGAATGAATTCACTA+TGG + chr6_4:84269628-84269647 Msa1000900:three_prime_UTR 20.0%
!! TATTAGAATGAATTCACTAT+GGG + chr6_4:84269629-84269648 Msa1000900:three_prime_UTR 20.0%
!!! TCTATTTGTTACCAAAAAAA+TGG + chr6_4:84269656-84269675 Msa1000900:three_prime_UTR 20.0%
!!! CATTCATTCTCTTTAATTTG+GGG + chr6_4:84265928-84265947 Msa1000900:intron 25.0%
!!! ATTCATTCTCTTTAATTTGG+GGG + chr6_4:84265929-84265948 Msa1000900:intron 25.0%
! GAAATATTGGGTTAAAACAA+AGG - chr6_4:84266148-84266167 None:intergenic 25.0%
!! TCCTTGATAATTTCAGATTT+GGG - chr6_4:84266330-84266349 None:intergenic 25.0%
!! ATGATATGTTTAAAACCCAA+CGG + chr6_4:84266364-84266383 Msa1000900:CDS 25.0%
! CAATAAACGACATTACATTT+AGG + chr6_4:84266436-84266455 Msa1000900:intron 25.0%
! AGCAATCCAGTTAATTAAAT+TGG - chr6_4:84266530-84266549 None:intergenic 25.0%
! CATAAACTGCACAAAAAATA+AGG - chr6_4:84266906-84266925 None:intergenic 25.0%
! TCATACCTTTATATCCAAAT+CGG - chr6_4:84266957-84266976 None:intergenic 25.0%
! TTGGTATGCCTTAATAATAT+TGG - chr6_4:84267021-84267040 None:intergenic 25.0%
!!! ACCTTTTATAGTTTTTTTCG+CGG - chr6_4:84267071-84267090 None:intergenic 25.0%
! CGAAAAAAACTATAAAAGGT+GGG + chr6_4:84267071-84267090 Msa1000900:intron 25.0%
!!! TTTGGGGTTTTTTGTATTTT+GGG - chr6_4:84267119-84267138 None:intergenic 25.0%
!!! TTTTGGGGTTTTTTGTATTT+TGG - chr6_4:84267120-84267139 None:intergenic 25.0%
!! CTTCAAAGAACTTTTTGTTA+GGG - chr6_4:84267268-84267287 None:intergenic 25.0%
! ATCAAGGGTAATTAACTAAT+TGG - chr6_4:84267368-84267387 None:intergenic 25.0%
!! CAATATTTTCTCTCAAAACT+TGG + chr6_4:84267413-84267432 Msa1000900:intron 25.0%
!! ATATTTTCTCTCAAAACTTG+GGG + chr6_4:84267415-84267434 Msa1000900:intron 25.0%
! GTGATTAGTATTAGTAAAAG+TGG + chr6_4:84267496-84267515 Msa1000900:intron 25.0%
! AATCCATAACTTCTCTTATT+TGG - chr6_4:84267591-84267610 None:intergenic 25.0%
! CTATATTTATGGACAATATG+AGG - chr6_4:84267614-84267633 None:intergenic 25.0%
! CTCATATTGTCCATAAATAT+AGG + chr6_4:84267612-84267631 Msa1000900:intron 25.0%
! TCTATCATTCATAGAATCAT+AGG - chr6_4:84267891-84267910 None:intergenic 25.0%
! TTCAACATATTTGTAACACT+GGG - chr6_4:84267990-84268009 None:intergenic 25.0%
! TTTCAACATATTTGTAACAC+TGG - chr6_4:84267991-84268010 None:intergenic 25.0%
! ATTCATCAGATATATATGAC+TGG - chr6_4:84268058-84268077 None:intergenic 25.0%
! AATGTAACTTCTATCAATGT+TGG + chr6_4:84268163-84268182 Msa1000900:CDS 25.0%
! GAATAAACTCACAAATGAAA+TGG - chr6_4:84268218-84268237 None:intergenic 25.0%
! TCAAAACATATATGCAACTA+AGG - chr6_4:84268249-84268268 None:intergenic 25.0%
!!! ACTTGAAATGTTTTTTGTTC+AGG + chr6_4:84268314-84268333 Msa1000900:intron 25.0%
! ATTCTCTAAATTGTAGTTTG+CGG + chr6_4:84268891-84268910 Msa1000900:intron 25.0%
! AATTGTGAAAATTTCCTTAG+TGG + chr6_4:84269281-84269300 Msa1000900:intron 25.0%
!! CTGAACTTTAGAAATTGTAA+CGG + chr6_4:84269392-84269411 Msa1000900:intron 25.0%
!! TTTTCTTTTATTCTTTTGGC+AGG + chr6_4:84269459-84269478 Msa1000900:intron 25.0%
!! TTTCTTTTATTCTTTTGGCA+GGG + chr6_4:84269460-84269479 Msa1000900:intron 25.0%
! GTAAAATTGTGAAATGTCTT+TGG + chr6_4:84269509-84269528 Msa1000900:three_prime_UTR 25.0%
!! TTTGGAATTATGTAAACTTG+AGG + chr6_4:84269527-84269546 Msa1000900:three_prime_UTR 25.0%
! TTGGAATTATGTAAACTTGA+GGG + chr6_4:84269528-84269547 Msa1000900:three_prime_UTR 25.0%
!!! ACGATTCTTATCCATTTTTT+TGG - chr6_4:84269670-84269689 None:intergenic 25.0%
TAGTTTGATGAAACCATATC+AGG + chr6_4:84265714-84265733 Msa1000900:five_prime_UTR 30.0%
TGAAAATTCATACCTGCAAT+CGG - chr6_4:84265861-84265880 None:intergenic 30.0%
AACAGTTCAAGAATTGGAAA+AGG - chr6_4:84265896-84265915 None:intergenic 30.0%
!! TTCATTCTCTTTAATTTGGG+GGG + chr6_4:84265930-84265949 Msa1000900:intron 30.0%
! GATAATTTCAGATTTGGGTT+TGG - chr6_4:84266325-84266344 None:intergenic 30.0%
! ACCCAAATCTGAAATTATCA+AGG + chr6_4:84266326-84266345 Msa1000900:CDS 30.0%
! CTCCTTGATAATTTCAGATT+TGG - chr6_4:84266331-84266350 None:intergenic 30.0%
! CAAATCTGAAATTATCAAGG+AGG + chr6_4:84266329-84266348 Msa1000900:CDS 30.0%
CGTTAGCCAATTTAATTAAC+TGG + chr6_4:84266521-84266540 Msa1000900:intron 30.0%
GCTTTATCTAAAAATACTCG+AGG + chr6_4:84266547-84266566 Msa1000900:intron 30.0%
ACTTCTGATCTTATGTTTGT+AGG + chr6_4:84266674-84266693 Msa1000900:intron 30.0%
TGTAGGATATTGAAGTGAAA+AGG + chr6_4:84266691-84266710 Msa1000900:intron 30.0%
! AGTGAAAAGGCTTTTCATTT+TGG + chr6_4:84266704-84266723 Msa1000900:CDS 30.0%
! ATCAGAAGTATATGGAGATA+AGG + chr6_4:84266733-84266752 Msa1000900:CDS 30.0%
! ACAACAGTTTTCCAGAAAAA+AGG - chr6_4:84266801-84266820 None:intergenic 30.0%
ATGAACCATCCTAAATTGAA+AGG + chr6_4:84266923-84266942 Msa1000900:CDS 30.0%
TGAACCATCCTAAATTGAAA+GGG + chr6_4:84266924-84266943 Msa1000900:CDS 30.0%
AAAACCCTTTCAATTTAGGA+TGG - chr6_4:84266931-84266950 None:intergenic 30.0%
GTCAAAAACCCTTTCAATTT+AGG - chr6_4:84266935-84266954 None:intergenic 30.0%
!! TTTGACCGATTTGGATATAA+AGG + chr6_4:84266949-84266968 Msa1000900:CDS 30.0%
ACCGCGAAAAAAACTATAAA+AGG + chr6_4:84267067-84267086 Msa1000900:intron 30.0%
GCGAAAAAAACTATAAAAGG+TGG + chr6_4:84267070-84267089 Msa1000900:intron 30.0%
!!! TTGGGGTTTTTTGTATTTTG+GGG - chr6_4:84267118-84267137 None:intergenic 30.0%
! CCTTCAAAGAACTTTTTGTT+AGG - chr6_4:84267269-84267288 None:intergenic 30.0%
CCTAACAAAAAGTTCTTTGA+AGG + chr6_4:84267266-84267285 Msa1000900:intron 30.0%
! TCTTTTCATGAAACGATCAA+GGG - chr6_4:84267383-84267402 None:intergenic 30.0%
! ATCTTTTCATGAAACGATCA+AGG - chr6_4:84267384-84267403 None:intergenic 30.0%
TAATACTAATCACAACAGCT+GGG - chr6_4:84267489-84267508 None:intergenic 30.0%
TCTCCAAATAAGAGAAGTTA+TGG + chr6_4:84267585-84267604 Msa1000900:intron 30.0%
GAAATAGAAAAAAGGAAGAG+TGG - chr6_4:84267713-84267732 None:intergenic 30.0%
ATTTCAATTTCATCCATCCA+TGG + chr6_4:84267728-84267747 Msa1000900:intron 30.0%
AAAACATATATATTGGGCCA+TGG - chr6_4:84267748-84267767 None:intergenic 30.0%
AGCATGTTCAGAAATCAATA+TGG + chr6_4:84267817-84267836 Msa1000900:intron 30.0%
GTTCAGAAATCAATATGGAT+TGG + chr6_4:84267822-84267841 Msa1000900:intron 30.0%
ACAAATCTAAACAATCTGCA+AGG - chr6_4:84267956-84267975 None:intergenic 30.0%
AGGAACAACATTGAATGAAA+TGG - chr6_4:84268035-84268054 None:intergenic 30.0%
AATGTTGGAAAACATGAAGA+AGG + chr6_4:84268178-84268197 Msa1000900:CDS 30.0%
AAACATGAAGAAGGAGAAAA+AGG + chr6_4:84268187-84268206 Msa1000900:CDS 30.0%
ACATAAGATTCTATTAGAGG+TGG - chr6_4:84268517-84268536 None:intergenic 30.0%
TGAACTCATTGAAGTTGAAA+AGG + chr6_4:84268557-84268576 Msa1000900:CDS 30.0%
AGTTGAAAAGGAAGTTGAAA+AGG + chr6_4:84268569-84268588 Msa1000900:CDS 30.0%
!! AATGAGTTGATTCATAAGAG+TGG + chr6_4:84268748-84268767 Msa1000900:CDS 30.0%
!! ATGAGTTGATTCATAAGAGT+GGG + chr6_4:84268749-84268768 Msa1000900:CDS 30.0%
ACATTGTAATAATAACGACC+AGG - chr6_4:84268946-84268965 None:intergenic 30.0%
! AAGTGCTGTCAATCAAATAA+AGG + chr6_4:84269086-84269105 Msa1000900:intron 30.0%
AATCAAATAAAGGCTAGTGT+AGG + chr6_4:84269096-84269115 Msa1000900:intron 30.0%
GAACAATAAAGATGTTATGG+TGG + chr6_4:84269244-84269263 Msa1000900:intron 30.0%
AACTAAAGCTAAAACCAAGT+CGG - chr6_4:84269573-84269592 None:intergenic 30.0%
AAAAACCTCTGAACCTGATA+TGG - chr6_4:84265730-84265749 None:intergenic 35.0%
TGAGCAAACAGTTCAAGAAT+TGG - chr6_4:84265902-84265921 None:intergenic 35.0%
!!! GGGTTTTAAACCTTATGCAT+CGG + chr6_4:84265956-84265975 Msa1000900:intron 35.0%
!!! GGTTTTAAACCTTATGCATC+GGG + chr6_4:84265957-84265976 Msa1000900:intron 35.0%
!! GTTTTAAACCTTATGCATCG+GGG + chr6_4:84265958-84265977 Msa1000900:intron 35.0%
! GGGGATTTTATCTTCTTTGA+TGG + chr6_4:84265977-84265996 Msa1000900:intron 35.0%
!! TGAGAAAGTGGGTTAAGTAA+AGG - chr6_4:84266191-84266210 None:intergenic 35.0%
GAGTGTAACAATGAGAAAGT+GGG - chr6_4:84266202-84266221 None:intergenic 35.0%
TGAAATTATCAAGGAGGAAG+AGG + chr6_4:84266335-84266354 Msa1000900:CDS 35.0%
! TACCTTTTTGATGTACCGTT+GGG - chr6_4:84266382-84266401 None:intergenic 35.0%
! ATACCTTTTTGATGTACCGT+TGG - chr6_4:84266383-84266402 None:intergenic 35.0%
TCTAAAAATACTCGAGGACT+TGG + chr6_4:84266553-84266572 Msa1000900:intron 35.0%
! GGACTTAGATCAGAAGTATA+TGG + chr6_4:84266725-84266744 Msa1000900:CDS 35.0%
CATCAAGGTTTCAAAACACA+CGG - chr6_4:84266883-84266902 None:intergenic 35.0%
! GCACAAAAAATAAGGCATCA+AGG - chr6_4:84266898-84266917 None:intergenic 35.0%
!!! TAGTTTTTTTCGCGGTGTTT+TGG - chr6_4:84267063-84267082 None:intergenic 35.0%
!!! TGGGGTTTTTTGTATTTTGG+GGG - chr6_4:84267117-84267136 None:intergenic 35.0%
!! TAGGCAGGCATATTACTTTT+GGG - chr6_4:84267136-84267155 None:intergenic 35.0%
! TTAGGCAGGCATATTACTTT+TGG - chr6_4:84267137-84267156 None:intergenic 35.0%
TGTAGTAAGGAATTGATGCT+GGG - chr6_4:84267189-84267208 None:intergenic 35.0%
!!! ACTGGTTTTGTAGTGTAGTA+AGG - chr6_4:84267202-84267221 None:intergenic 35.0%
TACTACACTACAAAACCAGT+AGG + chr6_4:84267202-84267221 Msa1000900:intron 35.0%
!!! TTGGTTTTGTGGTGATCTTT+TGG - chr6_4:84267235-84267254 None:intergenic 35.0%
TCAGAACATCTAACAAAACC+AGG - chr6_4:84267334-84267353 None:intergenic 35.0%
AAATATCTGCTTTCAGCTGT+AGG + chr6_4:84267450-84267469 Msa1000900:intron 35.0%
CTAATACTAATCACAACAGC+TGG - chr6_4:84267490-84267509 None:intergenic 35.0%
TTGGCTCAAATGAATGTATG+AGG + chr6_4:84267841-84267860 Msa1000900:intron 35.0%
GATCTTGATTGCATGAAACT+AGG + chr6_4:84267909-84267928 Msa1000900:intron 35.0%
CATCAGATATATATGACTGG+AGG - chr6_4:84268055-84268074 None:intergenic 35.0%
!! TGAGTTGATTCATAAGAGTG+GGG + chr6_4:84268750-84268769 Msa1000900:CDS 35.0%
CTATAGTCATGATATAGCAC+AGG + chr6_4:84269021-84269040 Msa1000900:intron 35.0%
!!! CTGCTTTTGTTTTGTGATAC+TGG + chr6_4:84269050-84269069 Msa1000900:intron 35.0%
CATAACAAACTACTAAGCTC+TGG - chr6_4:84269194-84269213 None:intergenic 35.0%
!! TTGTTGTAGCTTTAGCTTGT+TGG + chr6_4:84269592-84269611 Msa1000900:three_prime_UTR 35.0%
TGAAACCATATCAGGTTCAG+AGG + chr6_4:84265722-84265741 Msa1000900:intron 40.0%
!! TCTCTTTAATTTGGGGGGTT+AGG + chr6_4:84265935-84265954 Msa1000900:intron 40.0%
!! CTCTTTAATTTGGGGGGTTA+GGG + chr6_4:84265936-84265955 Msa1000900:intron 40.0%
GATAAAATCCCCGATGCATA+AGG - chr6_4:84265969-84265988 None:intergenic 40.0%
!! GATTTTGAGTGACACTCTGT+AGG - chr6_4:84266098-84266117 None:intergenic 40.0%
GGAGTGTAACAATGAGAAAG+TGG - chr6_4:84266203-84266222 None:intergenic 40.0%
AACCCAACGGTACATCAAAA+AGG + chr6_4:84266377-84266396 Msa1000900:CDS 40.0%
TCACTACGCTCATCACAAAT+AGG - chr6_4:84266762-84266781 None:intergenic 40.0%
CTGGAAAACTGTTGTGAGTT+TGG + chr6_4:84266806-84266825 Msa1000900:intron 40.0%
! GAAAGGGTTTTTGACCGATT+TGG + chr6_4:84266940-84266959 Msa1000900:CDS 40.0%
ATACCAACACAAGATTCGCA+TGG + chr6_4:84267034-84267053 Msa1000900:intron 40.0%
TAACCATGCGAATCTTGTGT+TGG - chr6_4:84267040-84267059 None:intergenic 40.0%
!! AGGCAGGCATATTACTTTTG+GGG - chr6_4:84267135-84267154 None:intergenic 40.0%
!!! TTAAGCCCAGCTCGTTTTTT+AGG - chr6_4:84267155-84267174 None:intergenic 40.0%
GTGTAGTAAGGAATTGATGC+TGG - chr6_4:84267190-84267209 None:intergenic 40.0%
!!! TGTGGTGATCTTTTGGTTTC+AGG - chr6_4:84267228-84267247 None:intergenic 40.0%
! GTTAGATGTTCTGAGTCTTG+TGG + chr6_4:84267340-84267359 Msa1000900:intron 40.0%
CATATATATTGGGCCATGGA+TGG - chr6_4:84267744-84267763 None:intergenic 40.0%
TCAGTGTCTCAAAGAAACTG+CGG + chr6_4:84268412-84268431 Msa1000900:CDS 40.0%
ATGAATGCAGCTTCTTTGAC+TGG + chr6_4:84268713-84268732 Msa1000900:intron 40.0%
TATGAAGTATGGGATGATCC+TGG + chr6_4:84268925-84268944 Msa1000900:CDS 40.0%
GTGAAAATTTCCTTAGTGGC+AGG + chr6_4:84269285-84269304 Msa1000900:intron 40.0%
!! TATTCTTTTGGCAGGGTGTT+TGG + chr6_4:84269467-84269486 Msa1000900:intron 40.0%
!! ATTCTTTTGGCAGGGTGTTT+GGG + chr6_4:84269468-84269487 Msa1000900:intron 40.0%
!! GAGGGTATTTAACGTTTGTG+TGG + chr6_4:84269546-84269565 Msa1000900:three_prime_UTR 40.0%
ATACCTGCAATCGGAGAGAA+GGG - chr6_4:84265852-84265871 None:intergenic 45.0%
TACACTCCGAAGAGAGAGAA+TGG + chr6_4:84266215-84266234 Msa1000900:intron 45.0%
AAGGCTCCATTCTCTCTCTT+CGG - chr6_4:84266224-84266243 None:intergenic 45.0%
!! CTTTGGCTTCTTGGTCTTGA+AGG - chr6_4:84266243-84266262 None:intergenic 45.0%
TCAAGACCAAGAAGCCAAAG+AGG + chr6_4:84266243-84266262 Msa1000900:CDS 45.0%
GACCCAAGGGCAATTAAGAA+GGG + chr6_4:84266269-84266288 Msa1000900:CDS 45.0%
CTCCCTTCTTAATTGCCCTT+GGG - chr6_4:84266274-84266293 None:intergenic 45.0%
ACTCCCTTCTTAATTGCCCT+TGG - chr6_4:84266275-84266294 None:intergenic 45.0%
AGGGCAATTAAGAAGGGAGT+CGG + chr6_4:84266275-84266294 Msa1000900:CDS 45.0%
!!! TCTTTTGGTTTCAGGCCTAC+TGG - chr6_4:84267220-84267239 None:intergenic 45.0%
!!! GTGCAGAGCAATTGGTTTTG+TGG - chr6_4:84267246-84267265 None:intergenic 45.0%
TTGTTAGGGTGCAGAGCAAT+TGG - chr6_4:84267254-84267273 None:intergenic 45.0%
!! GTTCTTTGAAGGTGTCGTCT+TGG + chr6_4:84267277-84267296 Msa1000900:intron 45.0%
!! TTTGAAGGTGTCGTCTTGGT+TGG + chr6_4:84267281-84267300 Msa1000900:intron 45.0%
! TGGCCTGATGATTTGTCTTG+AGG + chr6_4:84267301-84267320 Msa1000900:intron 45.0%
! GGCCTGATGATTTGTCTTGA+GGG + chr6_4:84267302-84267321 Msa1000900:intron 45.0%
TGCCCTCAAGACAAATCATC+AGG - chr6_4:84267307-84267326 None:intergenic 45.0%
!! TTGTCTTGAGGGCATTTACC+TGG + chr6_4:84267313-84267332 Msa1000900:intron 45.0%
ACGCAAAAAGCAGCGTGAAA+AGG + chr6_4:84268593-84268612 Msa1000900:CDS 45.0%
GCGTGAAAAGGAACGCAAAA+AGG + chr6_4:84268605-84268624 Msa1000900:CDS 45.0%
AACGCAAAAAGGAACGCAAG+AGG + chr6_4:84268616-84268635 Msa1000900:CDS 45.0%
TAAGAGTGGGGATAGAGATG+AGG + chr6_4:84268762-84268781 Msa1000900:CDS 45.0%
! GTGTTTGGGTGTGTCTGTTT+TGG + chr6_4:84269482-84269501 Msa1000900:three_prime_UTR 45.0%
!! AAAAAAAAAACATATATATT+GGG - chr6_4:84267754-84267773 None:intergenic 5.0%
!! ATGAAATAAATAATTAAATA+TGG + chr6_4:84268676-84268695 Msa1000900:intron 5.0%
CATACCTGCAATCGGAGAGA+AGG - chr6_4:84265853-84265872 None:intergenic 50.0%
ACTCTGTAGGATGCATGCTC+TGG - chr6_4:84266085-84266104 None:intergenic 50.0%
GACCAAGAAGCCAAAGAGGT+TGG + chr6_4:84266247-84266266 Msa1000900:CDS 50.0%
! GTCCAACCTCTTTGGCTTCT+TGG - chr6_4:84266252-84266271 None:intergenic 50.0%
GGACCCAAGGGCAATTAAGA+AGG + chr6_4:84266268-84266287 Msa1000900:CDS 50.0%
! AAAAGGTGGGCGCCGTATAT+AGG + chr6_4:84267084-84267103 Msa1000900:intron 50.0%
TGCCTGCCTAAAAAACGAGC+TGG + chr6_4:84267146-84267165 Msa1000900:intron 50.0%
GCCTGCCTAAAAAACGAGCT+GGG + chr6_4:84267147-84267166 Msa1000900:intron 50.0%
GTGTCTCAAAGAAACTGCGG+TGG + chr6_4:84268415-84268434 Msa1000900:CDS 50.0%
GCAAAAAGGAACGCAAGAGG+AGG + chr6_4:84268619-84268638 Msa1000900:CDS 50.0%
TCATCGTCATCCTGCCACTA+AGG - chr6_4:84269298-84269317 None:intergenic 50.0%
TGATCAGGCTGACGATGATC+AGG + chr6_4:84269315-84269334 Msa1000900:CDS 50.0%
TGATCAGGCTGACGATGATC+AGG + chr6_4:84269315-84269334 Msa1000900:CDS 50.0%
CTGGATCCAGTGCTCAATGA+GGG + chr6_4:84269353-84269372 Msa1000900:CDS 50.0%
TGCATACCCTCATTGAGCAC+TGG - chr6_4:84269362-84269381 None:intergenic 50.0%
AACGTTTGTGTGGTCCGACT+TGG + chr6_4:84269556-84269575 Msa1000900:three_prime_UTR 50.0%
AGTCCCTTCTCTCCGATTGC+AGG + chr6_4:84265846-84265865 Msa1000900:five_prime_UTR 55.0%
AGCCAAAGAGGTTGGACCCA+AGG + chr6_4:84266255-84266274 Msa1000900:CDS 55.0%
GCCAAAGAGGTTGGACCCAA+GGG + chr6_4:84266256-84266275 Msa1000900:CDS 55.0%
!! GGGGGTGTTCCGCCTATATA+CGG - chr6_4:84267099-84267118 None:intergenic 55.0%
!!! GCCCAGCTCGTTTTTTAGGC+AGG - chr6_4:84267151-84267170 None:intergenic 55.0%
GTGGCAGGATGACGATGATC+AGG + chr6_4:84269300-84269319 Msa1000900:intron 55.0%
GCTGGATCCAGTGCTCAATG+AGG + chr6_4:84269352-84269371 Msa1000900:CDS 55.0%
GCCCTTGGGTCCAACCTCTT+TGG - chr6_4:84266260-84266279 None:intergenic 60.0%
! AGGTGGGCGCCGTATATAGG+CGG + chr6_4:84267087-84267106 Msa1000900:intron 60.0%
CAGGCTGACGATGATCAGGC+TGG + chr6_4:84269319-84269338 Msa1000900:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 84265701 84269698 84265701 ID=Msa1000900;Name=Msa1000900
chr6_4 mRNA 84265701 84269698 84265701 ID=Msa1000900-mRNA-1;Parent=Msa1000900;Name=Msa1000900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=67|0.90|0.91|1|0.72|0.58|12|220|266
chr6_4 exon 84265701 84265735 84265701 ID=Msa1000900-mRNA-1:exon:16367;Parent=Msa1000900-mRNA-1
chr6_4 exon 84265843 84265867 84265843 ID=Msa1000900-mRNA-1:exon:16368;Parent=Msa1000900-mRNA-1
chr6_4 exon 84266227 84266398 84266227 ID=Msa1000900-mRNA-1:exon:16369;Parent=Msa1000900-mRNA-1
chr6_4 exon 84266696 84266818 84266696 ID=Msa1000900-mRNA-1:exon:16370;Parent=Msa1000900-mRNA-1
chr6_4 exon 84266920 84266970 84266920 ID=Msa1000900-mRNA-1:exon:16371;Parent=Msa1000900-mRNA-1
chr6_4 exon 84268154 84268225 84268154 ID=Msa1000900-mRNA-1:exon:16372;Parent=Msa1000900-mRNA-1
chr6_4 exon 84268336 84268443 84268336 ID=Msa1000900-mRNA-1:exon:16373;Parent=Msa1000900-mRNA-1
chr6_4 exon 84268543 84268640 84268543 ID=Msa1000900-mRNA-1:exon:16374;Parent=Msa1000900-mRNA-1
chr6_4 exon 84268723 84268783 84268723 ID=Msa1000900-mRNA-1:exon:16375;Parent=Msa1000900-mRNA-1
chr6_4 exon 84268907 84268963 84268907 ID=Msa1000900-mRNA-1:exon:16376;Parent=Msa1000900-mRNA-1
chr6_4 exon 84269307 84269374 84269307 ID=Msa1000900-mRNA-1:exon:16377;Parent=Msa1000900-mRNA-1
chr6_4 exon 84269481 84269698 84269481 ID=Msa1000900-mRNA-1:exon:16378;Parent=Msa1000900-mRNA-1
chr6_4 five_prime_UTR 84265701 84265735 84265701 ID=Msa1000900-mRNA-1:five_prime_utr;Parent=Msa1000900-mRNA-1
chr6_4 five_prime_UTR 84265843 84265867 84265843 ID=Msa1000900-mRNA-1:five_prime_utr;Parent=Msa1000900-mRNA-1
chr6_4 five_prime_UTR 84266227 84266233 84266227 ID=Msa1000900-mRNA-1:five_prime_utr;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84266234 84266398 84266234 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84266696 84266818 84266696 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84266920 84266970 84266920 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84268154 84268225 84268154 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84268336 84268443 84268336 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84268543 84268640 84268543 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84268723 84268783 84268723 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84268907 84268963 84268907 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 CDS 84269307 84269372 84269307 ID=Msa1000900-mRNA-1:cds;Parent=Msa1000900-mRNA-1
chr6_4 three_prime_UTR 84269373 84269374 84269373 ID=Msa1000900-mRNA-1:three_prime_utr;Parent=Msa1000900-mRNA-1
chr6_4 three_prime_UTR 84269481 84269698 84269481 ID=Msa1000900-mRNA-1:three_prime_utr;Parent=Msa1000900-mRNA-1
Gene Sequence

>Msa1000900

ATGGAGCCTTCAAGACCAAGAAGCCAAAGAGGTTGGACCCAAGGGCAATTAAGAAGGGAGTCGGTTTGCTCTTTGTTCAGATACGAGTCCAAACCCAAATCTGAAATTATCAAGGAGGAAGAGGCAGTTAATGATATGTTTAAAACCCAACGGTACATCAAAAAGGATATTGAAGTGAAAAGGCTTTTCATTTTGGACTTAGATCAGAAGTATATGGAGATAAGGAAACCTATTTGTGATGAGCGTAGTGAATTTATAAAAAAGATTCCTTTTTTCTGGAAAACTGTTTTTATGAACCATCCTAAATTGAAAGGGTTTTTGACCGATTTGGATATAAAGATATTTGCTAATGTAACTTCTATCAATGTTGGAAAACATGAAGAAGGAGAAAAAGGCTATTCCATTTCATTTGAATTTTGTACAAATGATTATATTAAAAATGAGAAGATTTCGAAGAATTATGCTGTTTATAAAAGAAAAACAGTAGTCAGTGTCTCAAAGAAACTGCGGTGGAAAGATATTGATGATAAAAATGAACTCATTGAAGTTGAAAAGGAAGTTGAAAAGGAACGCAAAAAGCAGCGTGAAAAGGAACGCAAAAAGGAACGCAAGAGGAGCTTCTTTGACTGGTTTAATATTACGAATGAGTTGATTCATAAGAGTGGGGATAGAGATGAGTTTGCGGATATCATCAAATATGAAGTATGGGATGATCCTGGTCGTTATTATTACAATGATGACGATGATCAGGCTGACGATGATCAGGCTGACGATGATCAGGCTGGATCCAGTGCTCAATGA

Protein sequence

>Msa1000900

MEPSRPRSQRGWTQGQLRRESVCSLFRYESKPKSEIIKEEEAVNDMFKTQRYIKKDIEVKRLFILDLDQKYMEIRKPICDERSEFIKKIPFFWKTVFMNHPKLKGFLTDLDIKIFANVTSINVGKHEEGEKGYSISFEFCTNDYIKNEKISKNYAVYKRKTVVSVSKKLRWKDIDDKNELIEVEKEVEKERKKQREKERKKERKRSFFDWFNITNELIHKSGDRDEFADIIKYEVWDDPGRYYYNDDDDQADDDQADDDQAGSSAQ*