Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707310 | KEH28975.1 | 85.714 | 63 | 7 | 1 | 92 | 154 | 1 | 61 | 1.71e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707310 | A0A072USW6 | 85.714 | 63 | 7 | 1 | 92 | 154 | 1 | 61 | 8.16e-28 | 110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0688390 | Msa0707310 | 0.802661 | 5.047592e-49 | -8.615850e-47 |
| Msa0707310 | Msa0711100 | 0.804303 | 2.304424e-49 | -8.615850e-47 |
| Msa0707310 | Msa0832150 | 0.801110 | 1.051013e-48 | -8.615850e-47 |
| Msa0707310 | Msa1128060 | 0.817883 | 2.616693e-52 | -8.615850e-47 |
| Msa0707310 | Msa1231840 | 0.801170 | 1.021669e-48 | -8.615850e-47 |
| Msa0707310 | Msa1306560 | 0.803383 | 3.577822e-49 | -8.615850e-47 |
| Msa0707310 | Msa1393510 | 0.961164 | 2.189927e-119 | -8.615850e-47 |
| Msa0707310 | Msa1426270 | 0.959808 | 7.501589e-118 | -8.615850e-47 |
| Msa0233810 | Msa0707310 | 0.812681 | 3.751218e-51 | -8.615850e-47 |
| Msa0257500 | Msa0707310 | 0.810796 | 9.647425e-51 | -8.615850e-47 |
| Msa0303360 | Msa0707310 | 0.807846 | 4.139383e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707310 | MtrunA17_Chr1g0204831 | 62.791 | 86 | 25 | 3 | 66 | 151 | 348 | 426 | 4.37e-22 | 91.7 |
| Msa0707310 | MtrunA17_Chr1g0166381 | 52.222 | 90 | 34 | 4 | 66 | 154 | 361 | 442 | 1.16e-20 | 87.8 |
| Msa0707310 | MtrunA17_Chr6g0460021 | 85.000 | 40 | 6 | 0 | 123 | 162 | 4 | 43 | 8.39e-19 | 76.3 |
| Msa0707310 | MtrunA17_Chr1g0185201 | 41.379 | 116 | 55 | 5 | 44 | 152 | 355 | 464 | 1.26e-16 | 76.3 |
| Msa0707310 | MtrunA17_Chr4g0001611 | 71.053 | 38 | 11 | 0 | 2 | 39 | 73 | 110 | 5.62e-13 | 63.2 |
| Msa0707310 | MtrunA17_Chr7g0260211 | 40.541 | 111 | 53 | 5 | 49 | 152 | 350 | 454 | 1.20e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707310 | AT4G14740.3 | 46.067 | 89 | 41 | 3 | 66 | 154 | 230 | 311 | 4.13e-18 | 80.1 |
| Msa0707310 | AT4G14740.1 | 45.556 | 90 | 40 | 4 | 66 | 154 | 369 | 450 | 5.27e-18 | 80.5 |
| Msa0707310 | AT4G14740.2 | 45.556 | 90 | 40 | 4 | 66 | 154 | 369 | 450 | 5.27e-18 | 80.5 |
| Msa0707310 | AT3G22810.3 | 48.315 | 89 | 39 | 3 | 66 | 154 | 226 | 307 | 8.78e-17 | 76.6 |
| Msa0707310 | AT3G22810.1 | 47.778 | 90 | 38 | 4 | 66 | 154 | 364 | 445 | 1.75e-16 | 76.3 |
| Msa0707310 | AT5G43870.1 | 52.000 | 75 | 31 | 2 | 66 | 140 | 347 | 416 | 9.28e-16 | 73.9 |
Find 83 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCATGTTTACAATTT+TGG | 0.081970 | 4_4:-80545559 | None:intergenic |
| TGTACTTGATGCAATTTATT+AGG | 0.125993 | 4_4:+80545449 | Msa0707310:three_prime_UTR |
| AAATAGACATGTTTCGATTC+AGG | 0.231481 | 4_4:+80545392 | Msa0707310:three_prime_UTR |
| GGCTTACCTCTTCTTAATCT+TGG | 0.247982 | 4_4:+80542990 | Msa0707310:CDS |
| TGCAAAGACCTGAGCATTGC+TGG | 0.291496 | 4_4:+80545344 | Msa0707310:three_prime_UTR |
| GTACTTGATGCAATTTATTA+GGG | 0.294884 | 4_4:+80545450 | Msa0707310:three_prime_UTR |
| TCTCACCGCCATCCAGTAAA+TGG | 0.298174 | 4_4:-80544091 | None:intergenic |
| CTCAAGGGTTCTTAGTTTGA+TGG | 0.314676 | 4_4:+80545484 | Msa0707310:three_prime_UTR |
| CAGAAGATACAATAATCTTC+TGG | 0.338208 | 4_4:-80545323 | None:intergenic |
| GTGAGGAGGAATGAGGAAAC+AGG | 0.345932 | 4_4:-80543726 | None:intergenic |
| AGCTAGCTGCTCTTAATAAA+AGG | 0.348208 | 4_4:+80543660 | Msa0707310:intron |
| ACAAAGGAATGACAAAATAT+TGG | 0.354391 | 4_4:-80544579 | None:intergenic |
| TCTCTTCCTTTGCACACATC+TGG | 0.358215 | 4_4:-80541379 | None:intergenic |
| ATTTGAGAGTTCCTCCTTCA+AGG | 0.376894 | 4_4:+80543037 | Msa0707310:CDS |
| TTGGACGGGACGCCATTTAC+TGG | 0.382972 | 4_4:+80544079 | Msa0707310:CDS |
| TAATATGAAGCTTAAACTTA+AGG | 0.384161 | 4_4:+80541148 | Msa0707310:exon |
| CCTGATCACATTACTACATT+AGG | 0.386162 | 4_4:+80545421 | Msa0707310:three_prime_UTR |
| TATTTGAAGATTCTTATTAG+AGG | 0.394428 | 4_4:+80545282 | Msa0707310:three_prime_UTR |
| ATCGAGTTGGTAAGTTGTAT+TGG | 0.419679 | 4_4:+80543696 | Msa0707310:CDS |
| CACATAGGTAGCGGTCATAT+TGG | 0.420446 | 4_4:+80544422 | Msa0707310:CDS |
| TTGCAGATTGCAGTAAAGTC+TGG | 0.436893 | 4_4:+80545258 | Msa0707310:intron |
| TCAAGGGTTCTTAGTTTGAT+GGG | 0.437468 | 4_4:+80545485 | Msa0707310:three_prime_UTR |
| TATTTGACAATGTTTGTTCA+AGG | 0.441377 | 4_4:+80544616 | Msa0707310:three_prime_UTR |
| ATGAAGAGTAGGCACATTGC+TGG | 0.442785 | 4_4:+80543840 | Msa0707310:CDS |
| AGGTCGGATGAGAGAAGAGA+AGG | 0.445413 | 4_4:-80541101 | None:intergenic |
| AATAGACATGTTTCGATTCA+GGG | 0.449064 | 4_4:+80545393 | Msa0707310:three_prime_UTR |
| GGTCGGATGAGAGAAGAGAA+GGG | 0.449715 | 4_4:-80541100 | None:intergenic |
| TCCTCACCTTCAGTATGATA+AGG | 0.481722 | 4_4:+80543742 | Msa0707310:CDS |
| CAAAGATATGCCCGCTTGGA+CGG | 0.486154 | 4_4:+80544064 | Msa0707310:CDS |
| GGAACTCTCAAATATGTGAT+TGG | 0.492673 | 4_4:-80543027 | None:intergenic |
| AATTTCCTTTAACAGAAAAG+AGG | 0.495172 | 4_4:+80544968 | Msa0707310:intron |
| CTGAGACTTGTGTGCGGCAA+TGG | 0.496640 | 4_4:+80545531 | Msa0707310:three_prime_UTR |
| GAGAGAAGAAAGGAAGAGGT+CGG | 0.499165 | 4_4:-80541117 | None:intergenic |
| GGTGAGAATAGTCGCTACTT+TGG | 0.499376 | 4_4:+80544107 | Msa0707310:CDS |
| AAAAGAGGTCACCGTGGGAG+CGG | 0.503931 | 4_4:+80544983 | Msa0707310:three_prime_UTR |
| AAAGATATGCCCGCTTGGAC+GGG | 0.506528 | 4_4:+80544065 | Msa0707310:CDS |
| AATTTAAGCCAGCAATGCTC+AGG | 0.508204 | 4_4:-80545352 | None:intergenic |
| GATTGAGAGAAGAAAGGAAG+AGG | 0.512181 | 4_4:-80541121 | None:intergenic |
| TTCCTTTGCACACATCTGGA+TGG | 0.515608 | 4_4:-80541375 | None:intergenic |
| TAATGTGATTGAGAGAAGAA+AGG | 0.522994 | 4_4:-80541127 | None:intergenic |
| ACCTCTTCTTAATCTTGGTG+TGG | 0.526438 | 4_4:+80542995 | Msa0707310:CDS |
| CTCTATCAGATCATGACTGA+TGG | 0.527988 | 4_4:+80545012 | Msa0707310:three_prime_UTR |
| GTGTGCAAAGGAAGAGATTG+TGG | 0.529500 | 4_4:+80541385 | Msa0707310:CDS |
| CCTAATGTAGTAATGTGATC+AGG | 0.535415 | 4_4:-80545421 | None:intergenic |
| CTCATCTGCCCTCTGATCAA+AGG | 0.538021 | 4_4:-80544143 | None:intergenic |
| TCTGCCCTCTGATCAAAGGT+TGG | 0.539925 | 4_4:-80544139 | None:intergenic |
| CTTTGATCAGAGGGCAGATG+AGG | 0.544340 | 4_4:+80544144 | Msa0707310:CDS |
| AAATGGCGTCCCGTCCAAGC+GGG | 0.546462 | 4_4:-80544074 | None:intergenic |
| TTTCAGTATCACATAGGTAG+CGG | 0.546793 | 4_4:+80544413 | Msa0707310:intron |
| GTCGGATGAGAGAAGAGAAG+GGG | 0.547420 | 4_4:-80541099 | None:intergenic |
| GGATGAGAGAAGAGAAGGGG+AGG | 0.548176 | 4_4:-80541096 | None:intergenic |
| AAAGCCAACCTTTGATCAGA+GGG | 0.562777 | 4_4:+80544135 | Msa0707310:CDS |
| TTTGTCATTCCTTTGTGGAG+GGG | 0.566411 | 4_4:+80544586 | Msa0707310:three_prime_UTR |
| ACGGGACGCCATTTACTGGA+TGG | 0.567937 | 4_4:+80544083 | Msa0707310:CDS |
| TGATCAAAGATATGCCCGCT+TGG | 0.570252 | 4_4:+80544060 | Msa0707310:CDS |
| TAGGGCAAGCAAATTCCTCA+AGG | 0.571269 | 4_4:+80545468 | Msa0707310:three_prime_UTR |
| TGAAGAGTAGGCACATTGCT+GGG | 0.572384 | 4_4:+80543841 | Msa0707310:CDS |
| CTTGCTAGAGCATTGAGCTA+AGG | 0.573577 | 4_4:+80544471 | Msa0707310:exon |
| TGTGCAAAGGAAGAGATTGT+GGG | 0.575497 | 4_4:+80541386 | Msa0707310:CDS |
| GCTGCTCTTAATAAAAGGCT+AGG | 0.577639 | 4_4:+80543665 | Msa0707310:CDS |
| GAAAGCCAACCTTTGATCAG+AGG | 0.585264 | 4_4:+80544134 | Msa0707310:CDS |
| ACCTTATCATACTGAAGGTG+AGG | 0.586900 | 4_4:-80543743 | None:intergenic |
| CTAGGAACGTCTGATCGAGT+TGG | 0.594851 | 4_4:+80543683 | Msa0707310:CDS |
| CATTCACCTTATCATACTGA+AGG | 0.599577 | 4_4:-80543748 | None:intergenic |
| ACTGAAGGTGAGGAGGAATG+AGG | 0.603009 | 4_4:-80543733 | None:intergenic |
| TAGAGCATTGAGCTAAGGAA+TGG | 0.612462 | 4_4:+80544476 | Msa0707310:exon |
| AGATCATGACTGATGGAAGA+CGG | 0.614930 | 4_4:+80545019 | Msa0707310:three_prime_UTR |
| TACCATCCAGATGTGTGCAA+AGG | 0.620033 | 4_4:+80541373 | Msa0707310:CDS |
| TAGAGTTCACGCCGCTCCCA+CGG | 0.620538 | 4_4:-80544994 | None:intergenic |
| TTTGATCAGAGGGCAGATGA+GGG | 0.623430 | 4_4:+80544145 | Msa0707310:CDS |
| TTATCATACTGAAGGTGAGG+AGG | 0.632325 | 4_4:-80543740 | None:intergenic |
| TCCACACCAAGATTAAGAAG+AGG | 0.636889 | 4_4:-80542996 | None:intergenic |
| AGGGCAAGCAAATTCCTCAA+GGG | 0.638788 | 4_4:+80545469 | Msa0707310:three_prime_UTR |
| TAATCACTTCCCCTCCACAA+AGG | 0.643844 | 4_4:-80544595 | None:intergenic |
| AACAGAAAAGAGGTCACCGT+GGG | 0.653183 | 4_4:+80544978 | Msa0707310:intron |
| CATCAAACTAAGAACCCTTG+AGG | 0.655570 | 4_4:-80545483 | None:intergenic |
| TAAATGGCGTCCCGTCCAAG+CGG | 0.662738 | 4_4:-80544075 | None:intergenic |
| AGGTAGCGGTCATATTGGAG+TGG | 0.672744 | 4_4:+80544427 | Msa0707310:CDS |
| GGACGCCATTTACTGGATGG+CGG | 0.712376 | 4_4:+80544086 | Msa0707310:CDS |
| GTGCAAAGGAAGAGATTGTG+GGG | 0.740567 | 4_4:+80541387 | Msa0707310:CDS |
| CTAAGACTGAGACTTGTGTG+CGG | 0.741400 | 4_4:+80545525 | Msa0707310:three_prime_UTR |
| GCAGTTTCACTTGATCAACG+AGG | 0.753816 | 4_4:+80541411 | Msa0707310:CDS |
| TAACAGAAAAGAGGTCACCG+TGG | 0.760537 | 4_4:+80544977 | Msa0707310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATATCAATATATTTA+AGG | - | chr4_4:80541541-80541560 | None:intergenic | 10.0% |
| !!! | AGGTTTTTTTTTTGAATATT+TGG | + | chr4_4:80541332-80541351 | Msa0707310:intron | 15.0% |
| !!! | GGTTTTTTTTTTGAATATTT+GGG | + | chr4_4:80541333-80541352 | Msa0707310:intron | 15.0% |
| !! | ATTTAATTGTTATGATTGTT+TGG | + | chr4_4:80541495-80541514 | Msa0707310:intron | 15.0% |
| !! | TTTAATTGTTATGATTGTTT+GGG | + | chr4_4:80541496-80541515 | Msa0707310:intron | 15.0% |
| !!! | ATATTGATATTGATTGATAT+TGG | + | chr4_4:80541546-80541565 | Msa0707310:intron | 15.0% |
| !!! | GTTGTTTTATTTTAAATCAA+CGG | - | chr4_4:80541635-80541654 | None:intergenic | 15.0% |
| !! | TACATAAACATTAAAAAAAC+TGG | - | chr4_4:80541699-80541718 | None:intergenic | 15.0% |
| !!! | TTCTTGAATTTTTATATTTG+AGG | + | chr4_4:80542169-80542188 | Msa0707310:intron | 15.0% |
| !!! | TTAAAAAGTACTATAAATTC+TGG | + | chr4_4:80542242-80542261 | Msa0707310:intron | 15.0% |
| !!! | CATTTTTCAATTAAAATCAA+AGG | - | chr4_4:80543219-80543238 | None:intergenic | 15.0% |
| !!! | CATTGTTATTAAGAATTTTA+TGG | - | chr4_4:80543279-80543298 | None:intergenic | 15.0% |
| !! | ATTAAGAAAATTACAAGTTA+TGG | + | chr4_4:80543462-80543481 | Msa0707310:intron | 15.0% |
| !!! | TTTCTTTTTCTTTTTCTTAA+TGG | - | chr4_4:80543868-80543887 | None:intergenic | 15.0% |
| !!! | AAATCTGTTGTTTAAAAATT+AGG | - | chr4_4:80543932-80543951 | None:intergenic | 15.0% |
| !!! | TAATTTTTAAACAACAGATT+TGG | + | chr4_4:80543931-80543950 | Msa0707310:intron | 15.0% |
| !! | ATATAATACATTCCTTTATT+TGG | + | chr4_4:80544901-80544920 | Msa0707310:intron | 15.0% |
| !!! | TCAATTAAATCATTTTCAAT+TGG | + | chr4_4:80545068-80545087 | Msa0707310:intron | 15.0% |
| !! | TAATATGAAGCTTAAACTTA+AGG | + | chr4_4:80541148-80541167 | Msa0707310:exon | 20.0% |
| !!! | TCATCTAGTTTTTTGTTAAT+TGG | + | chr4_4:80541300-80541319 | Msa0707310:intron | 20.0% |
| !!! | TTGTTAATTGGATTTGTTTT+AGG | + | chr4_4:80541312-80541331 | Msa0707310:intron | 20.0% |
| !! | TAACTATGCAATGAAAATTA+AGG | - | chr4_4:80541475-80541494 | None:intergenic | 20.0% |
| !! | AACATTAAAAAAACTGGATT+TGG | - | chr4_4:80541693-80541712 | None:intergenic | 20.0% |
| !!! | TTTTGTGATTTTTATTGTGT+AGG | + | chr4_4:80542032-80542051 | Msa0707310:intron | 20.0% |
| !! | ATGATTCAGTGATTTAAAAA+AGG | + | chr4_4:80542111-80542130 | Msa0707310:intron | 20.0% |
| !!! | AACAATCTTAGTTCTTTAAT+TGG | + | chr4_4:80542305-80542324 | Msa0707310:intron | 20.0% |
| !!! | ACAATCTTAGTTCTTTAATT+GGG | + | chr4_4:80542306-80542325 | Msa0707310:intron | 20.0% |
| !!! | TTATTAAGAATTTTATGGAG+CGG | - | chr4_4:80543274-80543293 | None:intergenic | 20.0% |
| !! | TTCTTAATAACAATGTGATT+TGG | + | chr4_4:80543284-80543303 | Msa0707310:intron | 20.0% |
| !! | AAATTGCAGATATCAAATAA+AGG | - | chr4_4:80543348-80543367 | None:intergenic | 20.0% |
| !! | ATGATTAACTTAGCATTAAT+TGG | - | chr4_4:80543621-80543640 | None:intergenic | 20.0% |
| !!! | TTGACATAAAGAATTTTGAA+AGG | - | chr4_4:80543807-80543826 | None:intergenic | 20.0% |
| !! | TTTCAAAATTCTTTATGTCA+AGG | + | chr4_4:80543806-80543825 | Msa0707310:intron | 20.0% |
| !! | CTGTAAATTCAAAACATAAA+GGG | - | chr4_4:80544025-80544044 | None:intergenic | 20.0% |
| !! | TCTGTAAATTCAAAACATAA+AGG | - | chr4_4:80544026-80544045 | None:intergenic | 20.0% |
| !!! | TTCTACTTTCTATGTTATTT+TGG | + | chr4_4:80544362-80544381 | Msa0707310:intron | 20.0% |
| !!! | TTGGTTTTTGATATATGATT+TGG | + | chr4_4:80544381-80544400 | Msa0707310:intron | 20.0% |
| !! | ACAAATAAAATGATATGAGA+AGG | - | chr4_4:80544656-80544675 | None:intergenic | 20.0% |
| !!! | AACTTACAAATGATTTTGTA+GGG | + | chr4_4:80544831-80544850 | Msa0707310:intron | 20.0% |
| !!! | TTTTTGAATAAAGAGATTCA+AGG | + | chr4_4:80544869-80544888 | Msa0707310:intron | 20.0% |
| !! | TGAAAATTTGTGAAAATAAC+CGG | - | chr4_4:80545230-80545249 | None:intergenic | 20.0% |
| !! | TATTTGAAGATTCTTATTAG+AGG | + | chr4_4:80545282-80545301 | Msa0707310:three_prime_UTR | 20.0% |
| !!! | AATGATCATGTTTACAATTT+TGG | - | chr4_4:80545562-80545581 | None:intergenic | 20.0% |
| !! | GGATAGTTTAGAGAAATTTT+AGG | - | chr4_4:80541454-80541473 | None:intergenic | 25.0% |
| !! | ATTGGAGATTTAAGATCAAT+TGG | + | chr4_4:80541564-80541583 | Msa0707310:intron | 25.0% |
| ! | TACACTTGTGTGAAATAATT+AGG | + | chr4_4:80541743-80541762 | Msa0707310:intron | 25.0% |
| ! | ACACTTGTGTGAAATAATTA+GGG | + | chr4_4:80541744-80541763 | Msa0707310:intron | 25.0% |
| !!! | CTAGAAAGTTTTGATGTTAA+TGG | + | chr4_4:80542076-80542095 | Msa0707310:intron | 25.0% |
| !! | ATTTTATCTTTCAGTTGTGA+TGG | + | chr4_4:80542265-80542284 | Msa0707310:intron | 25.0% |
| !! | CAATCTTAGTTCTTTAATTG+GGG | + | chr4_4:80542307-80542326 | Msa0707310:intron | 25.0% |
| ! | GGAAATTAAGGAAAATAATC+AGG | - | chr4_4:80542531-80542550 | None:intergenic | 25.0% |
| !! | CAGAAAATATGACTTTGAAA+TGG | - | chr4_4:80542669-80542688 | None:intergenic | 25.0% |
| ! | TCAAAATAGATGAAAATGCA+GGG | - | chr4_4:80542920-80542939 | None:intergenic | 25.0% |
| ! | TTCAAAATAGATGAAAATGC+AGG | - | chr4_4:80542921-80542940 | None:intergenic | 25.0% |
| ! | TGGTCACTGAAATATATAAA+AGG | + | chr4_4:80543304-80543323 | Msa0707310:intron | 25.0% |
| !!! | TCTGATGGTTTTAGTTTAAA+TGG | + | chr4_4:80543387-80543406 | Msa0707310:intron | 25.0% |
| ! | CAATAGAACTAATTGACTAT+TGG | - | chr4_4:80543440-80543459 | None:intergenic | 25.0% |
| !! | GCTAAAACATGATTTTTATG+AGG | + | chr4_4:80543537-80543556 | Msa0707310:intron | 25.0% |
| !! | TTTTAGTGTATTCCAATGAA+TGG | + | chr4_4:80543564-80543583 | Msa0707310:intron | 25.0% |
| !! | TTACTCTAAAAATGAAGAGT+AGG | + | chr4_4:80543829-80543848 | Msa0707310:CDS | 25.0% |
| !! | TTTTTAAACAACAGATTTGG+AGG | + | chr4_4:80543934-80543953 | Msa0707310:intron | 25.0% |
| ! | AATTCAAAACATAAAGGGAA+TGG | - | chr4_4:80544020-80544039 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAATTTACAGATG+TGG | + | chr4_4:80544028-80544047 | Msa0707310:intron | 25.0% |
| ! | AACATAGAGAAATAACAATG+TGG | - | chr4_4:80544272-80544291 | None:intergenic | 25.0% |
| !!! | GTTATTTCTCTATGTTTTGA+TGG | + | chr4_4:80544276-80544295 | Msa0707310:intron | 25.0% |
| !!! | TTTTTGATATATGATTTGGC+TGG | + | chr4_4:80544385-80544404 | Msa0707310:intron | 25.0% |
| !!! | GTTTTATTTCAGTATCACAT+AGG | + | chr4_4:80544407-80544426 | Msa0707310:intron | 25.0% |
| ! | ACAAAGGAATGACAAAATAT+TGG | - | chr4_4:80544582-80544601 | None:intergenic | 25.0% |
| !! | AATATTTTGTCATTCCTTTG+TGG | + | chr4_4:80544581-80544600 | Msa0707310:three_prime_UTR | 25.0% |
| ! | TATTTGACAATGTTTGTTCA+AGG | + | chr4_4:80544616-80544635 | Msa0707310:three_prime_UTR | 25.0% |
| !! | GAACTTACAAATGATTTTGT+AGG | + | chr4_4:80544830-80544849 | Msa0707310:intron | 25.0% |
| !! | ACTTACAAATGATTTTGTAG+GGG | + | chr4_4:80544832-80544851 | Msa0707310:intron | 25.0% |
| ! | ATAAGTGCATTTCCAAATAA+AGG | - | chr4_4:80544916-80544935 | None:intergenic | 25.0% |
| ! | AATTTCCTTTAACAGAAAAG+AGG | + | chr4_4:80544968-80544987 | Msa0707310:intron | 25.0% |
| ! | TGAATAATTCCAAGTCTTTA+GGG | - | chr4_4:80545175-80545194 | None:intergenic | 25.0% |
| ! | ATGAATAATTCCAAGTCTTT+AGG | - | chr4_4:80545176-80545195 | None:intergenic | 25.0% |
| ! | TGTACTTGATGCAATTTATT+AGG | + | chr4_4:80545449-80545468 | Msa0707310:three_prime_UTR | 25.0% |
| ! | GTACTTGATGCAATTTATTA+GGG | + | chr4_4:80545450-80545469 | Msa0707310:three_prime_UTR | 25.0% |
| TAATGTGATTGAGAGAAGAA+AGG | - | chr4_4:80541130-80541149 | None:intergenic | 30.0% | |
| GAGAATTTCCAATTAAGGTT+GGG | - | chr4_4:80541211-80541230 | None:intergenic | 30.0% | |
| TGAGAATTTCCAATTAAGGT+TGG | - | chr4_4:80541212-80541231 | None:intergenic | 30.0% | |
| AGCTTGAGAATTTCCAATTA+AGG | - | chr4_4:80541216-80541235 | None:intergenic | 30.0% | |
| TGTGACACAATTATTGATCT+TGG | - | chr4_4:80541657-80541676 | None:intergenic | 30.0% | |
| TTTATTGTGTAGGTATGAAG+AGG | + | chr4_4:80542042-80542061 | Msa0707310:intron | 30.0% | |
| TTATTGTGTAGGTATGAAGA+GGG | + | chr4_4:80542043-80542062 | Msa0707310:intron | 30.0% | |
| TTCAGTGATTTAAAAAAGGC+AGG | + | chr4_4:80542115-80542134 | Msa0707310:intron | 30.0% | |
| TGATTTAAAAAAGGCAGGAT+TGG | + | chr4_4:80542120-80542139 | Msa0707310:intron | 30.0% | |
| ! | TATTTGAGGTAAGAACTGTT+TGG | + | chr4_4:80542183-80542202 | Msa0707310:intron | 30.0% |
| AACTGTTTGGTCTATTTGTT+TGG | + | chr4_4:80542196-80542215 | Msa0707310:intron | 30.0% | |
| TAAACAAACAGAGAAATAGC+AGG | - | chr4_4:80542337-80542356 | None:intergenic | 30.0% | |
| GCTTATCTATCAAATAATGC+AGG | + | chr4_4:80542461-80542480 | Msa0707310:intron | 30.0% | |
| TCAAAACGAATGGGAAATTA+AGG | - | chr4_4:80542543-80542562 | None:intergenic | 30.0% | |
| CAGGATCTATTAACTTTAGA+AGG | - | chr4_4:80542587-80542606 | None:intergenic | 30.0% | |
| ATGAACATAGAAGAACAAAC+AGG | - | chr4_4:80542623-80542642 | None:intergenic | 30.0% | |
| TAAAGAGAATGTAACTGTGA+CGG | + | chr4_4:80542752-80542771 | Msa0707310:intron | 30.0% | |
| ! | GTAAGTGATTGTGAATTTTG+TGG | + | chr4_4:80542794-80542813 | Msa0707310:intron | 30.0% |
| GTGCATTTCTGAATATACTT+TGG | + | chr4_4:80542868-80542887 | Msa0707310:intron | 30.0% | |
| GTAGAAAAACTAAACCTTGA+AGG | - | chr4_4:80543054-80543073 | None:intergenic | 30.0% | |
| AAAAACATAGTCCAACACAT+GGG | - | chr4_4:80543091-80543110 | None:intergenic | 30.0% | |
| AAAAAACATAGTCCAACACA+TGG | - | chr4_4:80543092-80543111 | None:intergenic | 30.0% | |
| TAGGGAGATTGAAATTAATG+AGG | - | chr4_4:80543145-80543164 | None:intergenic | 30.0% | |
| !! | AATCAAAGGCATCTATATTC+AGG | - | chr4_4:80543205-80543224 | None:intergenic | 30.0% |
| GTGTAAATTTATAGTGTGTG+TGG | + | chr4_4:80543484-80543503 | Msa0707310:intron | 30.0% | |
| ATTTATAGTGTGTGTGGTTA+AGG | + | chr4_4:80543490-80543509 | Msa0707310:intron | 30.0% | |
| TTAGCATTAATTGGAAGAAG+AGG | - | chr4_4:80543612-80543631 | None:intergenic | 30.0% | |
| CAACTTATGAAACAGTTGTT+TGG | + | chr4_4:80544309-80544328 | Msa0707310:intron | 30.0% | |
| ! | TGCTTTTATGTGCATTACAA+TGG | + | chr4_4:80545124-80545143 | Msa0707310:intron | 30.0% |
| GAATAATTCCAAGTCTTTAG+GGG | - | chr4_4:80545174-80545193 | None:intergenic | 30.0% | |
| !! | TTATTGATTGGCCTATAATC+CGG | + | chr4_4:80545208-80545227 | Msa0707310:intron | 30.0% |
| TGTGAAAATAACCGGATTAT+AGG | - | chr4_4:80545222-80545241 | None:intergenic | 30.0% | |
| CAGAAGATACAATAATCTTC+TGG | - | chr4_4:80545326-80545345 | None:intergenic | 30.0% | |
| ! | GTCTATTTATCTTTTGACAG+TGG | - | chr4_4:80545380-80545399 | None:intergenic | 30.0% |
| AAATAGACATGTTTCGATTC+AGG | + | chr4_4:80545392-80545411 | Msa0707310:three_prime_UTR | 30.0% | |
| AATAGACATGTTTCGATTCA+GGG | + | chr4_4:80545393-80545412 | Msa0707310:three_prime_UTR | 30.0% | |
| CAATTAAGGTTGGGAAAACA+CGG | - | chr4_4:80541202-80541221 | None:intergenic | 35.0% | |
| CACACAAGTGTAATCAAATG+TGG | - | chr4_4:80541735-80541754 | None:intergenic | 35.0% | |
| TATATGAAGATGACCGAGAA+AGG | - | chr4_4:80541914-80541933 | None:intergenic | 35.0% | |
| TATTGTGTAGGTATGAAGAG+GGG | + | chr4_4:80542044-80542063 | Msa0707310:intron | 35.0% | |
| TTATCTTTCAGTTGTGATGG+AGG | + | chr4_4:80542268-80542287 | Msa0707310:intron | 35.0% | |
| ATGTATGATAGCAGAAACCT+TGG | + | chr4_4:80542394-80542413 | Msa0707310:intron | 35.0% | |
| TGTATGATAGCAGAAACCTT+GGG | + | chr4_4:80542395-80542414 | Msa0707310:intron | 35.0% | |
| GCAGATTCATCAAAACGAAT+GGG | - | chr4_4:80542552-80542571 | None:intergenic | 35.0% | |
| TGCAGATTCATCAAAACGAA+TGG | - | chr4_4:80542553-80542572 | None:intergenic | 35.0% | |
| !! | ATTCGTTTTGATGAATCTGC+AGG | + | chr4_4:80542552-80542571 | Msa0707310:intron | 35.0% |
| ! | AACAGGTCTCAATTTTTCAC+AGG | - | chr4_4:80542606-80542625 | None:intergenic | 35.0% |
| AAATGGCTACAATAGTGCAT+AGG | - | chr4_4:80542652-80542671 | None:intergenic | 35.0% | |
| !!! | CTTTAGTTTTACGACTGTTG+TGG | - | chr4_4:80542737-80542756 | None:intergenic | 35.0% |
| ACAAAATCTGATTGAAGCGT+TGG | - | chr4_4:80542839-80542858 | None:intergenic | 35.0% | |
| GAAAATGCAGGGAAATTTCA+TGG | - | chr4_4:80542909-80542928 | None:intergenic | 35.0% | |
| !! | TGAACATTTGTTGTGTGTAC+AGG | + | chr4_4:80542965-80542984 | Msa0707310:intron | 35.0% |
| GGAACTCTCAAATATGTGAT+TGG | - | chr4_4:80543030-80543049 | None:intergenic | 35.0% | |
| GAAAAACTAAACCTTGAAGG+AGG | - | chr4_4:80543051-80543070 | None:intergenic | 35.0% | |
| !!! | TGGACTATGTTTTTTCAGCT+AGG | + | chr4_4:80543097-80543116 | Msa0707310:intron | 35.0% |
| ATCTACAATTGTGTGCAGTA+GGG | - | chr4_4:80543163-80543182 | None:intergenic | 35.0% | |
| AATCTACAATTGTGTGCAGT+AGG | - | chr4_4:80543164-80543183 | None:intergenic | 35.0% | |
| AGCTAGCTGCTCTTAATAAA+AGG | + | chr4_4:80543660-80543679 | Msa0707310:intron | 35.0% | |
| !! | ATCGAGTTGGTAAGTTGTAT+TGG | + | chr4_4:80543696-80543715 | Msa0707310:CDS | 35.0% |
| CATTCACCTTATCATACTGA+AGG | - | chr4_4:80543751-80543770 | None:intergenic | 35.0% | |
| TAAACAACAGATTTGGAGGT+TGG | + | chr4_4:80543938-80543957 | Msa0707310:intron | 35.0% | |
| !!! | AGGTTGGTTTTGTTCCATTT+AGG | + | chr4_4:80543954-80543973 | Msa0707310:intron | 35.0% |
| !!! | GGTTGGTTTTGTTCCATTTA+GGG | + | chr4_4:80543955-80543974 | Msa0707310:intron | 35.0% |
| TCCATTTAGGGATTTGTGAA+AGG | + | chr4_4:80543967-80543986 | Msa0707310:intron | 35.0% | |
| GTTGATTGCACAATTAAGGA+TGG | - | chr4_4:80544208-80544227 | None:intergenic | 35.0% | |
| ! | GCATGTTGATTGCACAATTA+AGG | - | chr4_4:80544212-80544231 | None:intergenic | 35.0% |
| GAAATAACAATGTGGCAAGT+TGG | - | chr4_4:80544264-80544283 | None:intergenic | 35.0% | |
| !!! | TCTATGTTTTGATGGAACGT+TGG | + | chr4_4:80544284-80544303 | Msa0707310:intron | 35.0% |
| TTTCAGTATCACATAGGTAG+CGG | + | chr4_4:80544413-80544432 | Msa0707310:intron | 35.0% | |
| ! | TGACAAAATATTGGCTGTCA+AGG | - | chr4_4:80544573-80544592 | None:intergenic | 35.0% |
| ! | ATTTTGTCATTCCTTTGTGG+AGG | + | chr4_4:80544584-80544603 | Msa0707310:three_prime_UTR | 35.0% |
| ! | TTTTGTCATTCCTTTGTGGA+GGG | + | chr4_4:80544585-80544604 | Msa0707310:three_prime_UTR | 35.0% |
| GCAACTAAGCTATATTGTGT+TGG | - | chr4_4:80544758-80544777 | None:intergenic | 35.0% | |
| ! | TCTTTAGGGGTAACAATGAA+TGG | - | chr4_4:80545161-80545180 | None:intergenic | 35.0% |
| ! | CTAGCATGTTGCTTATTGAT+TGG | + | chr4_4:80545196-80545215 | Msa0707310:intron | 35.0% |
| CCTAATGTAGTAATGTGATC+AGG | - | chr4_4:80545424-80545443 | None:intergenic | 35.0% | |
| CCTGATCACATTACTACATT+AGG | + | chr4_4:80545421-80545440 | Msa0707310:three_prime_UTR | 35.0% | |
| ! | TCAAGGGTTCTTAGTTTGAT+GGG | + | chr4_4:80545485-80545504 | Msa0707310:three_prime_UTR | 35.0% |
| GATTGAGAGAAGAAAGGAAG+AGG | - | chr4_4:80541124-80541143 | None:intergenic | 40.0% | |
| ! | TCCCTCTTTTCCCTTTTATC+TGG | + | chr4_4:80541175-80541194 | Msa0707310:intron | 40.0% |
| CCCAGATAAAAGGGAAAAGA+GGG | - | chr4_4:80541179-80541198 | None:intergenic | 40.0% | |
| ! | CCCTCTTTTCCCTTTTATCT+GGG | + | chr4_4:80541176-80541195 | Msa0707310:intron | 40.0% |
| AAAACACGGCCCAGATAAAA+GGG | - | chr4_4:80541188-80541207 | None:intergenic | 40.0% | |
| ! | CGTGTTTTCCCAACCTTAAT+TGG | + | chr4_4:80541200-80541219 | Msa0707310:intron | 40.0% |
| TGTGCAAAGGAAGAGATTGT+GGG | + | chr4_4:80541386-80541405 | Msa0707310:CDS | 40.0% | |
| TACTGTACGACTCAACAGAA+GGG | - | chr4_4:80541775-80541794 | None:intergenic | 40.0% | |
| ATACTGTACGACTCAACAGA+AGG | - | chr4_4:80541776-80541795 | None:intergenic | 40.0% | |
| TCTGTTGAGTCGTACAGTAT+CGG | + | chr4_4:80541776-80541795 | Msa0707310:intron | 40.0% | |
| AACGAGAGATGTATCCTTTC+TGG | + | chr4_4:80541876-80541895 | Msa0707310:intron | 40.0% | |
| ACGAGAGATGTATCCTTTCT+GGG | + | chr4_4:80541877-80541896 | Msa0707310:intron | 40.0% | |
| GGTCATGATGTATCCTTTCT+CGG | + | chr4_4:80541898-80541917 | Msa0707310:intron | 40.0% | |
| GATTGTGCATACACTGCAAT+TGG | + | chr4_4:80542218-80542237 | Msa0707310:intron | 40.0% | |
| AAGATAGTAACTGAGGCATG+TGG | + | chr4_4:80542418-80542437 | Msa0707310:intron | 40.0% | |
| ! | TAACTGTGACGGTTCGATTT+TGG | + | chr4_4:80542763-80542782 | Msa0707310:intron | 40.0% |
| GGGAAATTTCATGGCACAAA+AGG | - | chr4_4:80542900-80542919 | None:intergenic | 40.0% | |
| !! | CATTTGTTGTGTGTACAGGT+TGG | + | chr4_4:80542969-80542988 | Msa0707310:intron | 40.0% |
| GGCTTACCTCTTCTTAATCT+TGG | + | chr4_4:80542990-80543009 | Msa0707310:CDS | 40.0% | |
| ACCTCTTCTTAATCTTGGTG+TGG | + | chr4_4:80542995-80543014 | Msa0707310:CDS | 40.0% | |
| TCCACACCAAGATTAAGAAG+AGG | - | chr4_4:80542999-80543018 | None:intergenic | 40.0% | |
| ATTTGAGAGTTCCTCCTTCA+AGG | + | chr4_4:80543037-80543056 | Msa0707310:CDS | 40.0% | |
| AACACATGGGTGAAGAAATG+AGG | - | chr4_4:80543078-80543097 | None:intergenic | 40.0% | |
| TCATTTCTTCACCCATGTGT+TGG | + | chr4_4:80543077-80543096 | Msa0707310:intron | 40.0% | |
| AGATTAGTGTTTGCTCCAGT+TGG | + | chr4_4:80543179-80543198 | Msa0707310:intron | 40.0% | |
| TGTTGACGCAAACTTTCTGA+TGG | + | chr4_4:80543372-80543391 | Msa0707310:intron | 40.0% | |
| GCTGCTCTTAATAAAAGGCT+AGG | + | chr4_4:80543665-80543684 | Msa0707310:CDS | 40.0% | |
| TTATCATACTGAAGGTGAGG+AGG | - | chr4_4:80543743-80543762 | None:intergenic | 40.0% | |
| TCCTCACCTTCAGTATGATA+AGG | + | chr4_4:80543742-80543761 | Msa0707310:CDS | 40.0% | |
| ACCTTATCATACTGAAGGTG+AGG | - | chr4_4:80543746-80543765 | None:intergenic | 40.0% | |
| GCCTTTCACAAATCCCTAAA+TGG | - | chr4_4:80543971-80543990 | None:intergenic | 40.0% | |
| AAAGCCAACCTTTGATCAGA+GGG | + | chr4_4:80544135-80544154 | Msa0707310:CDS | 40.0% | |
| !! | TAGAGCATTGAGCTAAGGAA+TGG | + | chr4_4:80544476-80544495 | Msa0707310:exon | 40.0% |
| TTTGTCATTCCTTTGTGGAG+GGG | + | chr4_4:80544586-80544605 | Msa0707310:three_prime_UTR | 40.0% | |
| CATTGAGAGTCAGAAAAGGT+TGG | - | chr4_4:80544733-80544752 | None:intergenic | 40.0% | |
| GGAACATTGAGAGTCAGAAA+AGG | - | chr4_4:80544737-80544756 | None:intergenic | 40.0% | |
| ! | GGTGACCTCTTTTCTGTTAA+AGG | - | chr4_4:80544976-80544995 | None:intergenic | 40.0% |
| CTCTATCAGATCATGACTGA+TGG | + | chr4_4:80545012-80545031 | Msa0707310:three_prime_UTR | 40.0% | |
| AGATCATGACTGATGGAAGA+CGG | + | chr4_4:80545019-80545038 | Msa0707310:three_prime_UTR | 40.0% | |
| CATTGTTACCCCTAAAGACT+TGG | + | chr4_4:80545163-80545182 | Msa0707310:intron | 40.0% | |
| TTGCAGATTGCAGTAAAGTC+TGG | + | chr4_4:80545258-80545277 | Msa0707310:intron | 40.0% | |
| AATTTAAGCCAGCAATGCTC+AGG | - | chr4_4:80545355-80545374 | None:intergenic | 40.0% | |
| CATCAAACTAAGAACCCTTG+AGG | - | chr4_4:80545486-80545505 | None:intergenic | 40.0% | |
| ! | CTCAAGGGTTCTTAGTTTGA+TGG | + | chr4_4:80545484-80545503 | Msa0707310:three_prime_UTR | 40.0% |
| GAGAGAAGAAAGGAAGAGGT+CGG | - | chr4_4:80541120-80541139 | None:intergenic | 45.0% | |
| GCCCAGATAAAAGGGAAAAG+AGG | - | chr4_4:80541180-80541199 | None:intergenic | 45.0% | |
| GAAAACACGGCCCAGATAAA+AGG | - | chr4_4:80541189-80541208 | None:intergenic | 45.0% | |
| TACCATCCAGATGTGTGCAA+AGG | + | chr4_4:80541373-80541392 | Msa0707310:CDS | 45.0% | |
| TTCCTTTGCACACATCTGGA+TGG | - | chr4_4:80541378-80541397 | None:intergenic | 45.0% | |
| TCTCTTCCTTTGCACACATC+TGG | - | chr4_4:80541382-80541401 | None:intergenic | 45.0% | |
| GTGTGCAAAGGAAGAGATTG+TGG | + | chr4_4:80541385-80541404 | Msa0707310:CDS | 45.0% | |
| GTGCAAAGGAAGAGATTGTG+GGG | + | chr4_4:80541387-80541406 | Msa0707310:CDS | 45.0% | |
| GCAGTTTCACTTGATCAACG+AGG | + | chr4_4:80541411-80541430 | Msa0707310:CDS | 45.0% | |
| GGATACATCATGACCCAGAA+AGG | - | chr4_4:80541893-80541912 | None:intergenic | 45.0% | |
| CCTCAGTTACTATCTTCCCA+AGG | - | chr4_4:80542414-80542433 | None:intergenic | 45.0% | |
| CCTTGGGAAGATAGTAACTG+AGG | + | chr4_4:80542411-80542430 | Msa0707310:intron | 45.0% | |
| GCATCTATATTCAGGCCAAC+TGG | - | chr4_4:80543197-80543216 | None:intergenic | 45.0% | |
| ! | GAGCGGCATGCTGAATTTTA+TGG | - | chr4_4:80543257-80543276 | None:intergenic | 45.0% |
| TGGAAGAAGAGGTTGCAGAA+GGG | - | chr4_4:80543601-80543620 | None:intergenic | 45.0% | |
| TTGGAAGAAGAGGTTGCAGA+AGG | - | chr4_4:80543602-80543621 | None:intergenic | 45.0% | |
| ATGAAGAGTAGGCACATTGC+TGG | + | chr4_4:80543840-80543859 | Msa0707310:CDS | 45.0% | |
| TGAAGAGTAGGCACATTGCT+GGG | + | chr4_4:80543841-80543860 | Msa0707310:CDS | 45.0% | |
| TGATCAAAGATATGCCCGCT+TGG | + | chr4_4:80544060-80544079 | Msa0707310:CDS | 45.0% | |
| GGTGAGAATAGTCGCTACTT+TGG | + | chr4_4:80544107-80544126 | Msa0707310:CDS | 45.0% | |
| GAAAGCCAACCTTTGATCAG+AGG | + | chr4_4:80544134-80544153 | Msa0707310:CDS | 45.0% | |
| TTTGATCAGAGGGCAGATGA+GGG | + | chr4_4:80544145-80544164 | Msa0707310:CDS | 45.0% | |
| ! | ATGTGGCAAGTTGGCAACAA+AGG | - | chr4_4:80544255-80544274 | None:intergenic | 45.0% |
| ! | CACATAGGTAGCGGTCATAT+TGG | + | chr4_4:80544422-80544441 | Msa0707310:CDS | 45.0% |
| !! | CTTGCTAGAGCATTGAGCTA+AGG | + | chr4_4:80544471-80544490 | Msa0707310:exon | 45.0% |
| TAATCACTTCCCCTCCACAA+AGG | - | chr4_4:80544598-80544617 | None:intergenic | 45.0% | |
| GAGTCAGAAAAGGTTGGAAG+AGG | - | chr4_4:80544727-80544746 | None:intergenic | 45.0% | |
| TAACAGAAAAGAGGTCACCG+TGG | + | chr4_4:80544977-80544996 | Msa0707310:intron | 45.0% | |
| AACAGAAAAGAGGTCACCGT+GGG | + | chr4_4:80544978-80544997 | Msa0707310:intron | 45.0% | |
| TAGGGCAAGCAAATTCCTCA+AGG | + | chr4_4:80545468-80545487 | Msa0707310:three_prime_UTR | 45.0% | |
| AGGGCAAGCAAATTCCTCAA+GGG | + | chr4_4:80545469-80545488 | Msa0707310:three_prime_UTR | 45.0% | |
| CTAAGACTGAGACTTGTGTG+CGG | + | chr4_4:80545525-80545544 | Msa0707310:three_prime_UTR | 45.0% | |
| !!! | ATAAAATATATATTAGTTTT+TGG | + | chr4_4:80544934-80544953 | Msa0707310:intron | 5.0% |
| GTCGGATGAGAGAAGAGAAG+GGG | - | chr4_4:80541102-80541121 | None:intergenic | 50.0% | |
| GGTCGGATGAGAGAAGAGAA+GGG | - | chr4_4:80541103-80541122 | None:intergenic | 50.0% | |
| AGGTCGGATGAGAGAAGAGA+AGG | - | chr4_4:80541104-80541123 | None:intergenic | 50.0% | |
| CTAGGAACGTCTGATCGAGT+TGG | + | chr4_4:80543683-80543702 | Msa0707310:CDS | 50.0% | |
| GTGAGGAGGAATGAGGAAAC+AGG | - | chr4_4:80543729-80543748 | None:intergenic | 50.0% | |
| ACTGAAGGTGAGGAGGAATG+AGG | - | chr4_4:80543736-80543755 | None:intergenic | 50.0% | |
| CAAAGATATGCCCGCTTGGA+CGG | + | chr4_4:80544064-80544083 | Msa0707310:CDS | 50.0% | |
| AAAGATATGCCCGCTTGGAC+GGG | + | chr4_4:80544065-80544084 | Msa0707310:CDS | 50.0% | |
| TCTCACCGCCATCCAGTAAA+TGG | - | chr4_4:80544094-80544113 | None:intergenic | 50.0% | |
| TCTGCCCTCTGATCAAAGGT+TGG | - | chr4_4:80544142-80544161 | None:intergenic | 50.0% | |
| CTCATCTGCCCTCTGATCAA+AGG | - | chr4_4:80544146-80544165 | None:intergenic | 50.0% | |
| CTTTGATCAGAGGGCAGATG+AGG | + | chr4_4:80544144-80544163 | Msa0707310:CDS | 50.0% | |
| ! | AGGTAGCGGTCATATTGGAG+TGG | + | chr4_4:80544427-80544446 | Msa0707310:CDS | 50.0% |
| ! | TGCAAAGACCTGAGCATTGC+TGG | + | chr4_4:80545344-80545363 | Msa0707310:three_prime_UTR | 50.0% |
| GGATGAGAGAAGAGAAGGGG+AGG | - | chr4_4:80541099-80541118 | None:intergenic | 55.0% | |
| TAAATGGCGTCCCGTCCAAG+CGG | - | chr4_4:80544078-80544097 | None:intergenic | 55.0% | |
| TTGGACGGGACGCCATTTAC+TGG | + | chr4_4:80544079-80544098 | Msa0707310:CDS | 55.0% | |
| ACGGGACGCCATTTACTGGA+TGG | + | chr4_4:80544083-80544102 | Msa0707310:CDS | 55.0% | |
| GGACGCCATTTACTGGATGG+CGG | + | chr4_4:80544086-80544105 | Msa0707310:CDS | 55.0% | |
| AAAAGAGGTCACCGTGGGAG+CGG | + | chr4_4:80544983-80545002 | Msa0707310:three_prime_UTR | 55.0% | |
| CTGAGACTTGTGTGCGGCAA+TGG | + | chr4_4:80545531-80545550 | Msa0707310:three_prime_UTR | 55.0% | |
| GTGCTGCAGCGGCCATTCAT+TGG | - | chr4_4:80543579-80543598 | None:intergenic | 60.0% | |
| !! | GTTGCAGAAGGGTGCTGCAG+CGG | - | chr4_4:80543590-80543609 | None:intergenic | 60.0% |
| AAATGGCGTCCCGTCCAAGC+GGG | - | chr4_4:80544077-80544096 | None:intergenic | 60.0% | |
| TAGAGTTCACGCCGCTCCCA+CGG | - | chr4_4:80544997-80545016 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80541078 | 80545601 | 80541078 | ID=Msa0707310;Name=Msa0707310 |
| chr4_4 | mRNA | 80541078 | 80545601 | 80541078 | ID=Msa0707310-mRNA-1;Parent=Msa0707310;Name=Msa0707310-mRNA-1;_AED=0.30;_eAED=0.30;_QI=74|0.77|0.9|1|0.55|0.7|10|491|168 |
| chr4_4 | exon | 80541078 | 80541169 | 80541078 | ID=Msa0707310-mRNA-1:exon:26194;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80541373 | 80541441 | 80541373 | ID=Msa0707310-mRNA-1:exon:26195;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80542987 | 80543058 | 80542987 | ID=Msa0707310-mRNA-1:exon:26196;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80543662 | 80543763 | 80543662 | ID=Msa0707310-mRNA-1:exon:26197;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80543828 | 80543891 | 80543828 | ID=Msa0707310-mRNA-1:exon:26198;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80544045 | 80544166 | 80544045 | ID=Msa0707310-mRNA-1:exon:26199;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80544419 | 80544497 | 80544419 | ID=Msa0707310-mRNA-1:exon:26200;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80544579 | 80544637 | 80544579 | ID=Msa0707310-mRNA-1:exon:26201;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80544983 | 80545057 | 80544983 | ID=Msa0707310-mRNA-1:exon:26202;Parent=Msa0707310-mRNA-1 |
| chr4_4 | exon | 80545264 | 80545601 | 80545264 | ID=Msa0707310-mRNA-1:exon:26203;Parent=Msa0707310-mRNA-1 |
| chr4_4 | five_prime_UTR | 80541078 | 80541151 | 80541078 | ID=Msa0707310-mRNA-1:five_prime_utr;Parent=Msa0707310-mRNA-1 |
| chr4_4 | CDS | 80541152 | 80541169 | 80541152 | ID=Msa0707310-mRNA-1:cds;Parent=Msa0707310-mRNA-1 |
| chr4_4 | CDS | 80541373 | 80541441 | 80541373 | ID=Msa0707310-mRNA-1:cds;Parent=Msa0707310-mRNA-1 |
| chr4_4 | CDS | 80542987 | 80543058 | 80542987 | ID=Msa0707310-mRNA-1:cds;Parent=Msa0707310-mRNA-1 |
| chr4_4 | CDS | 80543662 | 80543763 | 80543662 | ID=Msa0707310-mRNA-1:cds;Parent=Msa0707310-mRNA-1 |
| chr4_4 | CDS | 80543828 | 80543891 | 80543828 | ID=Msa0707310-mRNA-1:cds;Parent=Msa0707310-mRNA-1 |
| chr4_4 | CDS | 80544045 | 80544166 | 80544045 | ID=Msa0707310-mRNA-1:cds;Parent=Msa0707310-mRNA-1 |
| chr4_4 | CDS | 80544419 | 80544478 | 80544419 | ID=Msa0707310-mRNA-1:cds;Parent=Msa0707310-mRNA-1 |
| chr4_4 | three_prime_UTR | 80544479 | 80544497 | 80544479 | ID=Msa0707310-mRNA-1:three_prime_utr;Parent=Msa0707310-mRNA-1 |
| chr4_4 | three_prime_UTR | 80544579 | 80544637 | 80544579 | ID=Msa0707310-mRNA-1:three_prime_utr;Parent=Msa0707310-mRNA-1 |
| chr4_4 | three_prime_UTR | 80544983 | 80545057 | 80544983 | ID=Msa0707310-mRNA-1:three_prime_utr;Parent=Msa0707310-mRNA-1 |
| chr4_4 | three_prime_UTR | 80545264 | 80545601 | 80545264 | ID=Msa0707310-mRNA-1:three_prime_utr;Parent=Msa0707310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
