Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247420 | XP_003595434.1 | 92.982 | 513 | 30 | 1 | 1 | 513 | 1 | 507 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247420 | sp|P42211|ASPRX_ORYSJ | 48.819 | 508 | 242 | 4 | 6 | 513 | 7 | 496 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247420 | G7IQG4 | 92.982 | 513 | 30 | 1 | 1 | 513 | 1 | 507 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204210 | Msa0247420 | 0.835603 | 1.523956e-56 | -8.615850e-47 |
| Msa0213090 | Msa0247420 | 0.819947 | 8.884926e-53 | -8.615850e-47 |
| Msa0221940 | Msa0247420 | 0.806502 | 7.974283e-50 | -8.615850e-47 |
| Msa0244740 | Msa0247420 | 0.827905 | 1.208235e-54 | -8.615850e-47 |
| Msa0247420 | Msa0253370 | 0.816159 | 6.384002e-52 | -8.615850e-47 |
| Msa0247420 | Msa0330400 | 0.817058 | 4.014658e-52 | -8.615850e-47 |
| Msa0247420 | Msa0742500 | 0.817070 | 3.989761e-52 | -8.615850e-47 |
| Msa0247420 | Msa0779540 | 0.821868 | 3.211543e-53 | -8.615850e-47 |
| Msa0247420 | Msa1296610 | 0.803867 | 2.839548e-49 | -8.615850e-47 |
| Msa0247420 | Msa1379070 | 0.818713 | 1.697591e-52 | -8.615850e-47 |
| Msa0247420 | Msa1379090 | 0.825733 | 3.990369e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247420 | MtrunA17_Chr2g0302421 | 93.110 | 508 | 29 | 1 | 6 | 513 | 1 | 502 | 0.0 | 971 |
| Msa0247420 | MtrunA17_Chr4g0069631 | 66.082 | 513 | 158 | 3 | 1 | 513 | 1 | 497 | 0.0 | 727 |
| Msa0247420 | MtrunA17_Chr7g0271351 | 52.621 | 515 | 231 | 5 | 1 | 513 | 1 | 504 | 0.0 | 560 |
| Msa0247420 | MtrunA17_Chr1g0193211 | 50.867 | 519 | 238 | 6 | 1 | 513 | 1 | 508 | 0.0 | 556 |
| Msa0247420 | MtrunA17_Chr2g0288851 | 49.237 | 524 | 241 | 6 | 1 | 513 | 1 | 510 | 1.17e-177 | 509 |
| Msa0247420 | MtrunA17_Chr4g0075181 | 47.070 | 529 | 254 | 5 | 1 | 513 | 1 | 519 | 5.28e-177 | 508 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0247420 | AT1G11910.1 | 49.310 | 507 | 245 | 3 | 7 | 513 | 12 | 506 | 0.0 | 519 |
| Msa0247420 | AT1G11910.2 | 49.310 | 507 | 245 | 3 | 7 | 513 | 23 | 517 | 0.0 | 518 |
| Msa0247420 | AT1G62290.1 | 48.800 | 500 | 240 | 4 | 20 | 512 | 22 | 512 | 0.0 | 518 |
| Msa0247420 | AT1G62290.2 | 48.800 | 500 | 240 | 4 | 20 | 512 | 22 | 512 | 0.0 | 518 |
| Msa0247420 | AT1G62290.5 | 48.523 | 474 | 228 | 4 | 20 | 486 | 22 | 486 | 4.49e-167 | 482 |
| Msa0247420 | AT4G04460.1 | 44.551 | 523 | 258 | 7 | 2 | 513 | 7 | 508 | 6.42e-166 | 479 |
| Msa0247420 | AT4G04460.2 | 44.359 | 523 | 255 | 8 | 2 | 513 | 7 | 504 | 3.30e-163 | 473 |
| Msa0247420 | AT1G62290.6 | 48.966 | 435 | 215 | 2 | 20 | 447 | 22 | 456 | 6.63e-157 | 455 |
| Msa0247420 | AT1G62290.4 | 48.966 | 435 | 215 | 2 | 20 | 447 | 22 | 456 | 6.63e-157 | 455 |
| Msa0247420 | AT1G62290.3 | 48.737 | 396 | 196 | 2 | 20 | 408 | 22 | 417 | 7.80e-138 | 405 |
| Msa0247420 | AT4G22050.1 | 41.633 | 245 | 135 | 7 | 68 | 308 | 34 | 274 | 1.62e-46 | 166 |
| Msa0247420 | AT1G69100.2 | 36.719 | 256 | 146 | 8 | 63 | 307 | 38 | 288 | 8.17e-40 | 148 |
| Msa0247420 | AT1G69100.1 | 36.719 | 256 | 146 | 8 | 63 | 307 | 30 | 280 | 9.17e-40 | 148 |
Find 125 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTTAGTACTGCCATTT+TGG | 0.148067 | 2_2:-29609078 | None:intergenic |
| AAAGTTACCAATTTCGTTAT+AGG | 0.188910 | 2_2:-29609941 | None:intergenic |
| GATAGAACAAGGGCATATTT+TGG | 0.210982 | 2_2:+29610764 | Msa0247420:CDS |
| TATACTTGGACTTGGATTTC+AGG | 0.211757 | 2_2:+29610323 | Msa0247420:CDS |
| TTGGATTTGGTCTCTATCTT+TGG | 0.223238 | 2_2:+29609465 | Msa0247420:CDS |
| TACTTCGATGTACAATATTA+TGG | 0.234285 | 2_2:+29609652 | Msa0247420:CDS |
| CAATAACCCTCTTGAGAAAT+TGG | 0.237329 | 2_2:-29610897 | None:intergenic |
| ATGTCAGCACATAAGATTTC+AGG | 0.241847 | 2_2:-29612238 | None:intergenic |
| AACGATTGTCCAACCGGATT+TGG | 0.243320 | 2_2:-29612955 | None:intergenic |
| CAATTTCTCAAGAGGGTTAT+TGG | 0.244036 | 2_2:+29610898 | Msa0247420:CDS |
| ACACTGGTAGCTCTAATCTT+TGG | 0.244114 | 2_2:+29609722 | Msa0247420:CDS |
| TTTCTCCCTATGGTTAAATA+AGG | 0.246886 | 2_2:+29610794 | Msa0247420:CDS |
| CAAAAGAGACTCTCTCTTAA+TGG | 0.252205 | 2_2:-29612432 | None:intergenic |
| GTACAATATTATGGAGAAAT+TGG | 0.263492 | 2_2:+29609661 | Msa0247420:CDS |
| ATATGGGAATCATTGATTTC+AGG | 0.264136 | 2_2:+29611967 | Msa0247420:CDS |
| CACTGGTAGCTCTAATCTTT+GGG | 0.265139 | 2_2:+29609723 | Msa0247420:CDS |
| GTGAGTGTTGATACAAATTA+TGG | 0.273821 | 2_2:+29609601 | Msa0247420:CDS |
| ATTAGACTTTGTTCAGATAA+TGG | 0.288447 | 2_2:+29612259 | Msa0247420:CDS |
| CTTTAAATACAAACCTGTTC+TGG | 0.292662 | 2_2:-29613051 | None:intergenic |
| TCCATCTATGTACTTTAATC+AGG | 0.294115 | 2_2:-29613781 | None:intergenic |
| TAGATAATGTCTACTGGTTT+AGG | 0.297014 | 2_2:+29613678 | Msa0247420:three_prime_UTR |
| TATGATGATGGATACATTTA+CGG | 0.305072 | 2_2:+29610088 | Msa0247420:CDS |
| GAACATACTGAGAAGGAAAA+AGG | 0.305563 | 2_2:-29613280 | None:intergenic |
| AATACTCACACTCACTATTA+TGG | 0.305864 | 2_2:-29613725 | None:intergenic |
| TCTAGCACCTATAACGAAAT+TGG | 0.307202 | 2_2:+29609934 | Msa0247420:CDS |
| CCAAACATTACATTCACATT+TGG | 0.310989 | 2_2:+29613006 | Msa0247420:CDS |
| CTTCCATTTGATAGTATACT+TGG | 0.311438 | 2_2:+29610309 | Msa0247420:CDS |
| TGCTGGTTGTTACATGTCTT+TGG | 0.311664 | 2_2:+29609446 | Msa0247420:CDS |
| TTGTTACATGTCTTTGGATT+TGG | 0.336597 | 2_2:+29609452 | Msa0247420:CDS |
| ATAACTACGGAAATTCGATA+TGG | 0.362943 | 2_2:+29611950 | Msa0247420:CDS |
| TCCTGATTAAAGTACATAGA+TGG | 0.378301 | 2_2:+29613780 | Msa0247420:three_prime_UTR |
| ATATCGAATTTCCGTAGTTA+TGG | 0.381442 | 2_2:-29611948 | None:intergenic |
| TATTATGGAGAAATTGGTAT+TGG | 0.386030 | 2_2:+29609667 | Msa0247420:CDS |
| GCTTATACAATTTCTAATGA+TGG | 0.391047 | 2_2:+29609487 | Msa0247420:CDS |
| GTTTCCTCTCTCTCCAGAAC+AGG | 0.392495 | 2_2:+29613038 | Msa0247420:CDS |
| GCCAAGACAATGTAAAAGTT+GGG | 0.392884 | 2_2:+29610119 | Msa0247420:CDS |
| CAGATTCTGCAAATCCTATA+CGG | 0.404994 | 2_2:-29613576 | None:intergenic |
| TCTTGATGTGCCTTCCCCAC+AGG | 0.408161 | 2_2:+29613361 | Msa0247420:CDS |
| TTTATAAACGATTGTCCAAC+CGG | 0.409626 | 2_2:-29612961 | None:intergenic |
| ATTATCTACATATTACTATA+CGG | 0.414977 | 2_2:-29613663 | None:intergenic |
| CTGTGCTGCAATAGTGGACT+CGG | 0.415057 | 2_2:+29611750 | Msa0247420:CDS |
| TATGGGAATCATTGATTTCA+GGG | 0.417684 | 2_2:+29611968 | Msa0247420:CDS |
| GGAAATAAATCAATTGAGTT+GGG | 0.419542 | 2_2:+29613801 | Msa0247420:three_prime_UTR |
| CCAAATGTGAATGTAATGTT+TGG | 0.425255 | 2_2:-29613006 | None:intergenic |
| TTTGCAATATGGTTGTCCTT+TGG | 0.425536 | 2_2:+29612460 | Msa0247420:CDS |
| GTGTGAGAGGCTTCCAAATC+CGG | 0.429661 | 2_2:+29612942 | Msa0247420:CDS |
| TCGGGGACTACTTTAATTGC+CGG | 0.429816 | 2_2:+29611769 | Msa0247420:CDS |
| TGGAAATAAATCAATTGAGT+TGG | 0.430473 | 2_2:+29613800 | Msa0247420:three_prime_UTR |
| TGCAAATCCTATACGGAGAT+TGG | 0.430860 | 2_2:-29613569 | None:intergenic |
| TTGGATCCTTATTTAACCAT+AGG | 0.445146 | 2_2:-29610800 | None:intergenic |
| AGCCAAGACAATGTAAAAGT+TGG | 0.457098 | 2_2:+29610118 | Msa0247420:CDS |
| AGTCCAAGTATACTATCAAA+TGG | 0.460899 | 2_2:-29610312 | None:intergenic |
| CTTCCCCACAGGGTCCCCTC+TGG | 0.461021 | 2_2:+29613372 | Msa0247420:CDS |
| CTACTTGCAAATAATACAAC+AGG | 0.464850 | 2_2:+29611023 | Msa0247420:CDS |
| CAGTGGTGCATAATGAAAGT+TGG | 0.466959 | 2_2:+29612400 | Msa0247420:CDS |
| GGGTGGCTGTGCTGCAATAG+TGG | 0.468506 | 2_2:+29611744 | Msa0247420:CDS |
| GGATTTCAGGATGTTTCAGT+TGG | 0.471759 | 2_2:+29610336 | Msa0247420:CDS |
| TTTGATAGTATACTTGGACT+TGG | 0.476117 | 2_2:+29610315 | Msa0247420:CDS |
| ATATGTATGTGCAGGGTTGT+TGG | 0.477358 | 2_2:+29613505 | Msa0247420:intron |
| CTTGATGTGCCTTCCCCACA+GGG | 0.478328 | 2_2:+29613362 | Msa0247420:CDS |
| GGTTTAGGTAAGAGTATGTA+AGG | 0.482112 | 2_2:+29613693 | Msa0247420:three_prime_UTR |
| TTCTCAAGAGGGTTATTGGC+AGG | 0.482133 | 2_2:+29610902 | Msa0247420:CDS |
| TGCGAAATCCCGTATGATGA+TGG | 0.483533 | 2_2:+29610076 | Msa0247420:CDS |
| TGAGATTGTCTTTGGTGGTG+TGG | 0.485274 | 2_2:+29610839 | Msa0247420:CDS |
| TTTCATTCGAAGTATAGGTC+GGG | 0.487235 | 2_2:+29609907 | Msa0247420:CDS |
| TGGATCCTTATTTAACCATA+GGG | 0.490719 | 2_2:-29610799 | None:intergenic |
| TTCTTTCAAAGCTGTGTGAG+AGG | 0.492077 | 2_2:+29612929 | Msa0247420:intron |
| CAGAGGGGACCCTGTGGGGA+AGG | 0.496212 | 2_2:-29613371 | None:intergenic |
| GGAGTAATATACCATGCTAC+TGG | 0.496300 | 2_2:-29609125 | None:intergenic |
| AGGATCCAATGGCAGAAGTA+GGG | 0.499125 | 2_2:+29610814 | Msa0247420:CDS |
| AACCATGCCATTGGAACAGA+AGG | 0.503270 | 2_2:+29611895 | Msa0247420:CDS |
| GAGAAGATGCATCTTGAAGA+TGG | 0.504280 | 2_2:-29609748 | None:intergenic |
| GATTTCAGGATGTTTCAGTT+GGG | 0.511773 | 2_2:+29610337 | Msa0247420:CDS |
| AGTGGTGCATAATGAAAGTT+GGG | 0.513363 | 2_2:+29612401 | Msa0247420:CDS |
| TAAATGTATCCATCATCATA+CGG | 0.514824 | 2_2:-29610085 | None:intergenic |
| TAACTACGGAAATTCGATAT+GGG | 0.515650 | 2_2:+29611951 | Msa0247420:CDS |
| ACTCAAATTAACCATGCCAT+TGG | 0.518999 | 2_2:+29611886 | Msa0247420:CDS |
| AACAAATCCTTCTGTTCCAA+TGG | 0.528562 | 2_2:-29611902 | None:intergenic |
| AAGGATCCAATGGCAGAAGT+AGG | 0.529707 | 2_2:+29610813 | Msa0247420:CDS |
| TCAATTGAGTTGGGAATCTG+TGG | 0.530568 | 2_2:+29613810 | Msa0247420:three_prime_UTR |
| ATCCTTCTGTTCCAATGGCA+TGG | 0.535909 | 2_2:-29611897 | None:intergenic |
| GATTAAGCAAAGCAATGTAA+AGG | 0.536096 | 2_2:+29612494 | Msa0247420:CDS |
| TACTTTCCAATTTCTCAAGA+GGG | 0.541272 | 2_2:+29610891 | Msa0247420:CDS |
| TGTTCTCCTGTGTGCTATAG+CGG | 0.548629 | 2_2:+29613329 | Msa0247420:CDS |
| TTACTTTCCAATTTCTCAAG+AGG | 0.549803 | 2_2:+29610890 | Msa0247420:CDS |
| GACTACGCCAATCTCCGTAT+AGG | 0.550968 | 2_2:+29613562 | Msa0247420:CDS |
| AATATGTAGATAATGTCTAC+TGG | 0.555773 | 2_2:+29613672 | Msa0247420:three_prime_UTR |
| TGTGCTGCAATAGTGGACTC+GGG | 0.559334 | 2_2:+29611751 | Msa0247420:CDS |
| GAGATGATATACAGTTGGAC+CGG | 0.561077 | 2_2:-29611788 | None:intergenic |
| ATGGTTAAATAAGGATCCAA+TGG | 0.567385 | 2_2:+29610803 | Msa0247420:CDS |
| CGTGTTCTACTACAATATAG+TGG | 0.572382 | 2_2:-29609146 | None:intergenic |
| AAATGTATCCATCATCATAC+GGG | 0.574548 | 2_2:-29610084 | None:intergenic |
| CAAACCTGTTCTGGAGAGAG+AGG | 0.576097 | 2_2:-29613042 | None:intergenic |
| TTGTATCTGCAGATTGAAGT+GGG | 0.578198 | 2_2:+29610993 | Msa0247420:intron |
| TTCATTCGAAGTATAGGTCG+GGG | 0.582837 | 2_2:+29609908 | Msa0247420:CDS |
| TTCAATGTTGTGTTTGACAC+TGG | 0.588083 | 2_2:+29609706 | Msa0247420:CDS |
| GAGAAATTGGAAAGTAAGTG+TGG | 0.591719 | 2_2:-29610884 | None:intergenic |
| GGATCCAATGGCAGAAGTAG+GGG | 0.593267 | 2_2:+29610815 | Msa0247420:CDS |
| ACTCTAAGAACATACTGAGA+AGG | 0.597427 | 2_2:-29613287 | None:intergenic |
| AACATTCATATCCAGTAGCA+TGG | 0.601305 | 2_2:+29609114 | Msa0247420:five_prime_UTR |
| GTATCTGCAGATTGAAGTGG+GGG | 0.601539 | 2_2:+29610995 | Msa0247420:intron |
| AGGTATAATATGATAGAACA+AGG | 0.611964 | 2_2:+29610753 | Msa0247420:intron |
| TCATCATACGGGATTTCGCA+AGG | 0.613400 | 2_2:-29610073 | None:intergenic |
| CCAAGACAATGTAAAAGTTG+GGG | 0.614771 | 2_2:+29610120 | Msa0247420:CDS |
| GTGCATAATGAAAGTTGGGA+TGG | 0.614926 | 2_2:+29612405 | Msa0247420:CDS |
| ATGGGAATCATTGATTTCAG+GGG | 0.615119 | 2_2:+29611969 | Msa0247420:CDS |
| GAGAGGCTTCCAAATCCGGT+TGG | 0.622716 | 2_2:+29612946 | Msa0247420:CDS |
| TTTGTATCTGCAGATTGAAG+TGG | 0.623910 | 2_2:+29610992 | Msa0247420:intron |
| AGTATTAAAATATGTCGATG+AGG | 0.637042 | 2_2:+29612521 | Msa0247420:CDS |
| ATTACCAGAGGGGACCCTGT+GGG | 0.641259 | 2_2:-29613376 | None:intergenic |
| GTGCTGCAATAGTGGACTCG+GGG | 0.644938 | 2_2:+29611752 | Msa0247420:CDS |
| TTTACAGGTTTATGTCAGGG+TGG | 0.650609 | 2_2:+29611727 | Msa0247420:intron |
| ATCTGCAAATAATACCACAC+TGG | 0.650813 | 2_2:-29610369 | None:intergenic |
| TTACCAGAGGGGACCCTGTG+GGG | 0.651193 | 2_2:-29613375 | None:intergenic |
| GATCCAATGGCAGAAGTAGG+GGG | 0.653154 | 2_2:+29610816 | Msa0247420:CDS |
| GATGAGTATGAAGTACATGC+TGG | 0.671763 | 2_2:+29609429 | Msa0247420:intron |
| GGTATAATATGATAGAACAA+GGG | 0.676046 | 2_2:+29610754 | Msa0247420:intron |
| AACACAACATTGAAGTACTG+TGG | 0.688328 | 2_2:-29609697 | None:intergenic |
| TGTATCTGCAGATTGAAGTG+GGG | 0.691045 | 2_2:+29610994 | Msa0247420:intron |
| CAGTGATGTTATTGAAACAG+TGG | 0.692257 | 2_2:+29612383 | Msa0247420:intron |
| TATTACCAGAGGGGACCCTG+TGG | 0.703309 | 2_2:-29613377 | None:intergenic |
| ACAAAACCGCTATAGCACAC+AGG | 0.715098 | 2_2:-29613335 | None:intergenic |
| TTGGGAAAGTCACACCAGTG+TGG | 0.728601 | 2_2:+29610355 | Msa0247420:CDS |
| ACAACATTGAAGTACTGTGG+TGG | 0.758447 | 2_2:-29609694 | None:intergenic |
| ATAAGTATGTATTACCAGAG+GGG | 0.771682 | 2_2:-29613386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATACTTTCTTTTTA+AGG | + | chr2_2:29609992-29610011 | Msa0247420:intron | 10.0% |
| !! | AATTTGTAAAATTTCATCAT+CGG | + | chr2_2:29609840-29609859 | Msa0247420:intron | 15.0% |
| !! | TTTGTATAAGATTAAATGAT+AGG | - | chr2_2:29609974-29609993 | None:intergenic | 15.0% |
| !! | TTATTTAAATTACTGAAAAG+TGG | + | chr2_2:29610432-29610451 | Msa0247420:intron | 15.0% |
| !! | ATTTCTATATATTTCTTGAA+AGG | + | chr2_2:29611196-29611215 | Msa0247420:intron | 15.0% |
| !!! | CTGTTTTATTTAAATTACAA+AGG | + | chr2_2:29612580-29612599 | Msa0247420:intron | 15.0% |
| !!! | ATAACTTTATTTATCCAATT+AGG | + | chr2_2:29612874-29612893 | Msa0247420:intron | 15.0% |
| !! | ATTATCTACATATTACTATA+CGG | - | chr2_2:29613666-29613685 | None:intergenic | 15.0% |
| !! | GAAACTGAAAACTATAAATA+TGG | + | chr2_2:29609315-29609334 | Msa0247420:intron | 20.0% |
| !!! | TGTTTGTTATGATAATATTC+AGG | + | chr2_2:29610046-29610065 | Msa0247420:intron | 20.0% |
| !! | CTAAAAACATGAGAATATAT+CGG | - | chr2_2:29610697-29610716 | None:intergenic | 20.0% |
| !! | AATAAAAGTAAAGAATGACA+TGG | - | chr2_2:29610971-29610990 | None:intergenic | 20.0% |
| !!! | TCTAAAATGACTTTATAAGT+GGG | + | chr2_2:29611566-29611585 | Msa0247420:intron | 20.0% |
| !! | CTAACTAAATTATACAAAAC+TGG | - | chr2_2:29611613-29611632 | None:intergenic | 20.0% |
| !!! | TTTCATCTAAAATTTGGATA+GGG | - | chr2_2:29611636-29611655 | None:intergenic | 20.0% |
| !!! | ATTTCATCTAAAATTTGGAT+AGG | - | chr2_2:29611637-29611656 | None:intergenic | 20.0% |
| !!! | AACTTGTGTAAATATTTTAC+AGG | + | chr2_2:29611712-29611731 | Msa0247420:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr2_2:29612086-29612105 | None:intergenic | 20.0% |
| !! | AAATTTGAATTAATGAAGCA+CGG | - | chr2_2:29612171-29612190 | None:intergenic | 20.0% |
| !!! | TTTAGAGTAAACATAGATAT+AGG | + | chr2_2:29612612-29612631 | Msa0247420:intron | 20.0% |
| !! | ATTTAGAGACTATATATTCA+AGG | - | chr2_2:29612639-29612658 | None:intergenic | 20.0% |
| !! | TATTCTTATATTCGTTAGTT+TGG | + | chr2_2:29612729-29612748 | Msa0247420:intron | 20.0% |
| !!! | AAAATTTAGTACTGCCATTT+TGG | - | chr2_2:29609081-29609100 | None:intergenic | 25.0% |
| ! | ATCTGTTTCAAATTTCAACA+TGG | - | chr2_2:29609412-29609431 | None:intergenic | 25.0% |
| ! | GCTTATACAATTTCTAATGA+TGG | + | chr2_2:29609487-29609506 | Msa0247420:CDS | 25.0% |
| ! | TACTTCGATGTACAATATTA+TGG | + | chr2_2:29609652-29609671 | Msa0247420:CDS | 25.0% |
| ! | GTACAATATTATGGAGAAAT+TGG | + | chr2_2:29609661-29609680 | Msa0247420:CDS | 25.0% |
| ! | TATTATGGAGAAATTGGTAT+TGG | + | chr2_2:29609667-29609686 | Msa0247420:CDS | 25.0% |
| ! | CTTATATCGAATTGAATTGA+TGG | + | chr2_2:29609795-29609814 | Msa0247420:intron | 25.0% |
| ! | GTCATATAAACACAACTTAA+AGG | - | chr2_2:29609867-29609886 | None:intergenic | 25.0% |
| ! | AAAGTTACCAATTTCGTTAT+AGG | - | chr2_2:29609944-29609963 | None:intergenic | 25.0% |
| !! | TATAACGAAATTGGTAACTT+TGG | + | chr2_2:29609943-29609962 | Msa0247420:intron | 25.0% |
| ! | TAAATGTATCCATCATCATA+CGG | - | chr2_2:29610088-29610107 | None:intergenic | 25.0% |
| !!! | TATGATGATGGATACATTTA+CGG | + | chr2_2:29610088-29610107 | Msa0247420:CDS | 25.0% |
| !!! | TAAAGTTTTGTATGCTTCTT+TGG | + | chr2_2:29610207-29610226 | Msa0247420:intron | 25.0% |
| !!! | ATTATATTTTGGTTGCAGTA+GGG | + | chr2_2:29610653-29610672 | Msa0247420:intron | 25.0% |
| !! | CGATATATTCTCATGTTTTT+AGG | + | chr2_2:29610695-29610714 | Msa0247420:intron | 25.0% |
| ! | AGGTATAATATGATAGAACA+AGG | + | chr2_2:29610753-29610772 | Msa0247420:intron | 25.0% |
| ! | GGTATAATATGATAGAACAA+GGG | + | chr2_2:29610754-29610773 | Msa0247420:intron | 25.0% |
| ! | ATGCTAAATAGAAATGCATA+AGG | - | chr2_2:29611050-29611069 | None:intergenic | 25.0% |
| ! | TTGAAAATGAGTTCATAAGT+GGG | + | chr2_2:29611352-29611371 | Msa0247420:intron | 25.0% |
| ! | CTAAAACGAACTGAAAATTT+GGG | - | chr2_2:29611427-29611446 | None:intergenic | 25.0% |
| ! | ACTAAAACGAACTGAAAATT+TGG | - | chr2_2:29611428-29611447 | None:intergenic | 25.0% |
| ! | CTCATATATAAGATGAGATA+TGG | + | chr2_2:29611543-29611562 | Msa0247420:intron | 25.0% |
| !! | GTCTAAAATGACTTTATAAG+TGG | + | chr2_2:29611565-29611584 | Msa0247420:intron | 25.0% |
| !!! | TTATACAAAACTGGTTTGTA+AGG | - | chr2_2:29611604-29611623 | None:intergenic | 25.0% |
| !! | AGCGTATTTCATCTAAAATT+TGG | - | chr2_2:29611642-29611661 | None:intergenic | 25.0% |
| !! | AAATTTTAGATGAAATACGC+TGG | + | chr2_2:29611641-29611660 | Msa0247420:intron | 25.0% |
| ! | ATTTACACAAGTTTATGTTG+TGG | - | chr2_2:29611705-29611724 | None:intergenic | 25.0% |
| !! | ATATTTTACAGGTTTATGTC+AGG | + | chr2_2:29611723-29611742 | Msa0247420:intron | 25.0% |
| !! | TATTTTACAGGTTTATGTCA+GGG | + | chr2_2:29611724-29611743 | Msa0247420:intron | 25.0% |
| !!! | TTTTAGAGATGATATACAGT+TGG | - | chr2_2:29611796-29611815 | None:intergenic | 25.0% |
| ! | AAAAACATTGTCCATAACTA+CGG | + | chr2_2:29611937-29611956 | Msa0247420:CDS | 25.0% |
| ! | ATTAGACTTTGTTCAGATAA+TGG | + | chr2_2:29612259-29612278 | Msa0247420:CDS | 25.0% |
| !! | CTTTTGTAGTTTTTGCAATA+TGG | + | chr2_2:29612449-29612468 | Msa0247420:CDS | 25.0% |
| ! | AGTATTAAAATATGTCGATG+AGG | + | chr2_2:29612521-29612540 | Msa0247420:CDS | 25.0% |
| ! | TAACTATTAGAAGACACTTT+CGG | - | chr2_2:29612685-29612704 | None:intergenic | 25.0% |
| !! | GTTAGTTTAATCATCAAATC+AGG | + | chr2_2:29612701-29612720 | Msa0247420:intron | 25.0% |
| ! | AATATGTAGATAATGTCTAC+TGG | + | chr2_2:29613672-29613691 | Msa0247420:three_prime_UTR | 25.0% |
| ! | TGGAAATAAATCAATTGAGT+TGG | + | chr2_2:29613800-29613819 | Msa0247420:three_prime_UTR | 25.0% |
| ! | GGAAATAAATCAATTGAGTT+GGG | + | chr2_2:29613801-29613820 | Msa0247420:three_prime_UTR | 25.0% |
| !!! | ACTTTGTTTTTTGGCCAAAA+TGG | + | chr2_2:29609064-29609083 | Msa0247420:five_prime_UTR | 30.0% |
| ACATCATCATCATCATCATA+AGG | + | chr2_2:29609200-29609219 | Msa0247420:five_prime_UTR | 30.0% | |
| GCAAGACATAAAGAAATTCA+AGG | - | chr2_2:29609237-29609256 | None:intergenic | 30.0% | |
| ATTTCTTTATGTCTTGCTTC+TGG | + | chr2_2:29609240-29609259 | Msa0247420:intron | 30.0% | |
| TTGTTACATGTCTTTGGATT+TGG | + | chr2_2:29609452-29609471 | Msa0247420:CDS | 30.0% | |
| !! | GTGAGTGTTGATACAAATTA+TGG | + | chr2_2:29609601-29609620 | Msa0247420:CDS | 30.0% |
| !! | GCTATTTTCATTCGAAGTAT+AGG | + | chr2_2:29609902-29609921 | Msa0247420:CDS | 30.0% |
| ! | TTTTCATTCGAAGTATAGGT+CGG | + | chr2_2:29609906-29609925 | Msa0247420:CDS | 30.0% |
| AAATGTATCCATCATCATAC+GGG | - | chr2_2:29610087-29610106 | None:intergenic | 30.0% | |
| !!! | TCTTTGGTTTTATTGATGTC+TGG | + | chr2_2:29610223-29610242 | Msa0247420:intron | 30.0% |
| ! | CTTCCATTTGATAGTATACT+TGG | + | chr2_2:29610309-29610328 | Msa0247420:CDS | 30.0% |
| AGTCCAAGTATACTATCAAA+TGG | - | chr2_2:29610315-29610334 | None:intergenic | 30.0% | |
| ! | TTTGATAGTATACTTGGACT+TGG | + | chr2_2:29610315-29610334 | Msa0247420:CDS | 30.0% |
| ! | CGATTCGTGTGATTATATTT+TGG | + | chr2_2:29610642-29610661 | Msa0247420:intron | 30.0% |
| !!! | GATTATATTTTGGTTGCAGT+AGG | + | chr2_2:29610652-29610671 | Msa0247420:intron | 30.0% |
| !! | TTAATCACTGCATGCTTTTT+AGG | - | chr2_2:29610721-29610740 | None:intergenic | 30.0% |
| TTTCTCCCTATGGTTAAATA+AGG | + | chr2_2:29610794-29610813 | Msa0247420:CDS | 30.0% | |
| ! | TGGATCCTTATTTAACCATA+GGG | - | chr2_2:29610802-29610821 | None:intergenic | 30.0% |
| ! | TTGGATCCTTATTTAACCAT+AGG | - | chr2_2:29610803-29610822 | None:intergenic | 30.0% |
| ATGGTTAAATAAGGATCCAA+TGG | + | chr2_2:29610803-29610822 | Msa0247420:CDS | 30.0% | |
| TTACTTTCCAATTTCTCAAG+AGG | + | chr2_2:29610890-29610909 | Msa0247420:CDS | 30.0% | |
| TACTTTCCAATTTCTCAAGA+GGG | + | chr2_2:29610891-29610910 | Msa0247420:CDS | 30.0% | |
| CTACTTGCAAATAATACAAC+AGG | + | chr2_2:29611023-29611042 | Msa0247420:CDS | 30.0% | |
| GCTATTGTGTAGAACTAAAA+GGG | + | chr2_2:29611234-29611253 | Msa0247420:intron | 30.0% | |
| !! | AAATGTTAAGAGTATCGCAT+TGG | + | chr2_2:29611317-29611336 | Msa0247420:intron | 30.0% |
| CTTGAAAATGAGTTCATAAG+TGG | + | chr2_2:29611351-29611370 | Msa0247420:intron | 30.0% | |
| AAAATGACTTTATAAGTGGG+AGG | + | chr2_2:29611569-29611588 | Msa0247420:intron | 30.0% | |
| CAAGAACTAGTAAGAAGAAA+GGG | - | chr2_2:29611850-29611869 | None:intergenic | 30.0% | |
| ACAAGAACTAGTAAGAAGAA+AGG | - | chr2_2:29611851-29611870 | None:intergenic | 30.0% | |
| !!! | TCTTACTAGTTCTTGTTTTC+AGG | + | chr2_2:29611855-29611874 | Msa0247420:intron | 30.0% |
| !!! | CTTACTAGTTCTTGTTTTCA+GGG | + | chr2_2:29611856-29611875 | Msa0247420:intron | 30.0% |
| ATATCGAATTTCCGTAGTTA+TGG | - | chr2_2:29611951-29611970 | None:intergenic | 30.0% | |
| ATAACTACGGAAATTCGATA+TGG | + | chr2_2:29611950-29611969 | Msa0247420:CDS | 30.0% | |
| TAACTACGGAAATTCGATAT+GGG | + | chr2_2:29611951-29611970 | Msa0247420:CDS | 30.0% | |
| !! | ATATGGGAATCATTGATTTC+AGG | + | chr2_2:29611967-29611986 | Msa0247420:CDS | 30.0% |
| !! | TATGGGAATCATTGATTTCA+GGG | + | chr2_2:29611968-29611987 | Msa0247420:CDS | 30.0% |
| AGGAATCAAGAATAAGAAGA+TGG | - | chr2_2:29612310-29612329 | None:intergenic | 30.0% | |
| TGTTAAGTTAGATGTAGCTA+AGG | - | chr2_2:29612345-29612364 | None:intergenic | 30.0% | |
| AACATCACTGCAAGTAAAAT+TGG | - | chr2_2:29612373-29612392 | None:intergenic | 30.0% | |
| ! | TAATCTGATTTTGCATCCAA+AGG | - | chr2_2:29612479-29612498 | None:intergenic | 30.0% |
| GATTAAGCAAAGCAATGTAA+AGG | + | chr2_2:29612494-29612513 | Msa0247420:CDS | 30.0% | |
| AACTATTAGAAGACACTTTC+GGG | - | chr2_2:29612684-29612703 | None:intergenic | 30.0% | |
| TTTATAAACGATTGTCCAAC+CGG | - | chr2_2:29612964-29612983 | None:intergenic | 30.0% | |
| CCAAATGTGAATGTAATGTT+TGG | - | chr2_2:29613009-29613028 | None:intergenic | 30.0% | |
| CCAAACATTACATTCACATT+TGG | + | chr2_2:29613006-29613025 | Msa0247420:CDS | 30.0% | |
| CTTTAAATACAAACCTGTTC+TGG | - | chr2_2:29613054-29613073 | None:intergenic | 30.0% | |
| AATGTGAAATCAATGAATGC+AGG | - | chr2_2:29613152-29613171 | None:intergenic | 30.0% | |
| AACATTTACAGGAAGGAAAA+TGG | - | chr2_2:29613183-29613202 | None:intergenic | 30.0% | |
| TAAAGAAACCAGATATGCTA+CGG | - | chr2_2:29613242-29613261 | None:intergenic | 30.0% | |
| ATAAGTATGTATTACCAGAG+GGG | - | chr2_2:29613389-29613408 | None:intergenic | 30.0% | |
| GATAAGTATGTATTACCAGA+GGG | - | chr2_2:29613390-29613409 | None:intergenic | 30.0% | |
| TGATAAGTATGTATTACCAG+AGG | - | chr2_2:29613391-29613410 | None:intergenic | 30.0% | |
| TGCACATACATATATCACTA+CGG | - | chr2_2:29613498-29613517 | None:intergenic | 30.0% | |
| TAGTGATATATGTATGTGCA+GGG | + | chr2_2:29613498-29613517 | Msa0247420:intron | 30.0% | |
| !! | TAGATAATGTCTACTGGTTT+AGG | + | chr2_2:29613678-29613697 | Msa0247420:three_prime_UTR | 30.0% |
| AATACTCACACTCACTATTA+TGG | - | chr2_2:29613728-29613747 | None:intergenic | 30.0% | |
| TCCTGATTAAAGTACATAGA+TGG | + | chr2_2:29613780-29613799 | Msa0247420:three_prime_UTR | 30.0% | |
| TCCATCTATGTACTTTAATC+AGG | - | chr2_2:29613784-29613803 | None:intergenic | 30.0% | |
| AACATTCATATCCAGTAGCA+TGG | + | chr2_2:29609114-29609133 | Msa0247420:five_prime_UTR | 35.0% | |
| CGTGTTCTACTACAATATAG+TGG | - | chr2_2:29609149-29609168 | None:intergenic | 35.0% | |
| !!! | GATGATGATGTTGACTTTTC+TGG | - | chr2_2:29609191-29609210 | None:intergenic | 35.0% |
| ! | TTGGATTTGGTCTCTATCTT+TGG | + | chr2_2:29609465-29609484 | Msa0247420:CDS | 35.0% |
| !! | AACACAACATTGAAGTACTG+TGG | - | chr2_2:29609700-29609719 | None:intergenic | 35.0% |
| TTCAATGTTGTGTTTGACAC+TGG | + | chr2_2:29609706-29609725 | Msa0247420:CDS | 35.0% | |
| TTTCATTCGAAGTATAGGTC+GGG | + | chr2_2:29609907-29609926 | Msa0247420:CDS | 35.0% | |
| TCTAGCACCTATAACGAAAT+TGG | + | chr2_2:29609934-29609953 | Msa0247420:CDS | 35.0% | |
| !!! | CTTTTTAAGGTGCCTCTAAT+TGG | + | chr2_2:29610005-29610024 | Msa0247420:intron | 35.0% |
| AGCCAAGACAATGTAAAAGT+TGG | + | chr2_2:29610118-29610137 | Msa0247420:CDS | 35.0% | |
| GCCAAGACAATGTAAAAGTT+GGG | + | chr2_2:29610119-29610138 | Msa0247420:CDS | 35.0% | |
| CCAAGACAATGTAAAAGTTG+GGG | + | chr2_2:29610120-29610139 | Msa0247420:CDS | 35.0% | |
| ! | AGGAATTTTGCGAGATTACA+AGG | + | chr2_2:29610262-29610281 | Msa0247420:intron | 35.0% |
| ! | GGAATTTTGCGAGATTACAA+GGG | + | chr2_2:29610263-29610282 | Msa0247420:intron | 35.0% |
| TATACTTGGACTTGGATTTC+AGG | + | chr2_2:29610323-29610342 | Msa0247420:CDS | 35.0% | |
| GATTTCAGGATGTTTCAGTT+GGG | + | chr2_2:29610337-29610356 | Msa0247420:CDS | 35.0% | |
| ATCTGCAAATAATACCACAC+TGG | - | chr2_2:29610372-29610391 | None:intergenic | 35.0% | |
| CTAGTACTAATCTGAGAAAG+TGG | - | chr2_2:29610578-29610597 | None:intergenic | 35.0% | |
| GTGATTAAGTCTGTATCTAC+AGG | + | chr2_2:29610733-29610752 | Msa0247420:intron | 35.0% | |
| !! | GATAGAACAAGGGCATATTT+TGG | + | chr2_2:29610764-29610783 | Msa0247420:CDS | 35.0% |
| GAGAAATTGGAAAGTAAGTG+TGG | - | chr2_2:29610887-29610906 | None:intergenic | 35.0% | |
| CAATAACCCTCTTGAGAAAT+TGG | - | chr2_2:29610900-29610919 | None:intergenic | 35.0% | |
| CAATTTCTCAAGAGGGTTAT+TGG | + | chr2_2:29610898-29610917 | Msa0247420:CDS | 35.0% | |
| TTTGTATCTGCAGATTGAAG+TGG | + | chr2_2:29610992-29611011 | Msa0247420:intron | 35.0% | |
| TTGTATCTGCAGATTGAAGT+GGG | + | chr2_2:29610993-29611012 | Msa0247420:intron | 35.0% | |
| TGAAGTTGCTAAAGAATGCA+TGG | + | chr2_2:29611150-29611169 | Msa0247420:intron | 35.0% | |
| GCTAAAGAATGCATGGTATT+AGG | + | chr2_2:29611157-29611176 | Msa0247420:intron | 35.0% | |
| AAAGAATGCATGGTATTAGG+TGG | + | chr2_2:29611160-29611179 | Msa0247420:intron | 35.0% | |
| !! | TGAAAGGCATTCAATTTCCA+TGG | + | chr2_2:29611212-29611231 | Msa0247420:intron | 35.0% |
| !! | TTAGTTCTACACAATAGCCA+TGG | - | chr2_2:29611232-29611251 | None:intergenic | 35.0% |
| GGCTATTGTGTAGAACTAAA+AGG | + | chr2_2:29611233-29611252 | Msa0247420:intron | 35.0% | |
| ! | TGATTTCGTAGGTTTGAGTT+AGG | + | chr2_2:29611396-29611415 | Msa0247420:intron | 35.0% |
| GTGTGTATCCAAAATACGTT+AGG | + | chr2_2:29611446-29611465 | Msa0247420:intron | 35.0% | |
| ACTCAAATTAACCATGCCAT+TGG | + | chr2_2:29611886-29611905 | Msa0247420:CDS | 35.0% | |
| AACAAATCCTTCTGTTCCAA+TGG | - | chr2_2:29611905-29611924 | None:intergenic | 35.0% | |
| !! | ATGGGAATCATTGATTTCAG+GGG | + | chr2_2:29611969-29611988 | Msa0247420:CDS | 35.0% |
| TCTCAAATTATTAGCGGTGT+CGG | - | chr2_2:29612080-29612099 | None:intergenic | 35.0% | |
| ATGTCAGCACATAAGATTTC+AGG | - | chr2_2:29612241-29612260 | None:intergenic | 35.0% | |
| AGCTAAGGAATGTGTCATAA+AGG | - | chr2_2:29612330-29612349 | None:intergenic | 35.0% | |
| CAGTGATGTTATTGAAACAG+TGG | + | chr2_2:29612383-29612402 | Msa0247420:intron | 35.0% | |
| AGTGGTGCATAATGAAAGTT+GGG | + | chr2_2:29612401-29612420 | Msa0247420:CDS | 35.0% | |
| CAAAAGAGACTCTCTCTTAA+TGG | - | chr2_2:29612435-29612454 | None:intergenic | 35.0% | |
| TTTGCAATATGGTTGTCCTT+TGG | + | chr2_2:29612460-29612479 | Msa0247420:CDS | 35.0% | |
| AAAGCTTCTGACTTCCTAAT+TGG | - | chr2_2:29612891-29612910 | None:intergenic | 35.0% | |
| ACACTCTAACATTTACAGGA+AGG | - | chr2_2:29613190-29613209 | None:intergenic | 35.0% | |
| CAACACACTCTAACATTTAC+AGG | - | chr2_2:29613194-29613213 | None:intergenic | 35.0% | |
| GAACATACTGAGAAGGAAAA+AGG | - | chr2_2:29613283-29613302 | None:intergenic | 35.0% | |
| ! | ACTCTAAGAACATACTGAGA+AGG | - | chr2_2:29613290-29613309 | None:intergenic | 35.0% |
| GTAGTGATATATGTATGTGC+AGG | + | chr2_2:29613497-29613516 | Msa0247420:intron | 35.0% | |
| ! | TGTTGGAGATATTTTCTTGC+AGG | + | chr2_2:29613522-29613541 | Msa0247420:CDS | 35.0% |
| CAGATTCTGCAAATCCTATA+CGG | - | chr2_2:29613579-29613598 | None:intergenic | 35.0% | |
| ! | GGTTTAGGTAAGAGTATGTA+AGG | + | chr2_2:29613693-29613712 | Msa0247420:three_prime_UTR | 35.0% |
| GGAGTAATATACCATGCTAC+TGG | - | chr2_2:29609128-29609147 | None:intergenic | 40.0% | |
| GATGAGTATGAAGTACATGC+TGG | + | chr2_2:29609429-29609448 | Msa0247420:intron | 40.0% | |
| ! | TGCTGGTTGTTACATGTCTT+TGG | + | chr2_2:29609446-29609465 | Msa0247420:CDS | 40.0% |
| !! | ACAACATTGAAGTACTGTGG+TGG | - | chr2_2:29609697-29609716 | None:intergenic | 40.0% |
| !! | ACACTGGTAGCTCTAATCTT+TGG | + | chr2_2:29609722-29609741 | Msa0247420:CDS | 40.0% |
| !! | CACTGGTAGCTCTAATCTTT+GGG | + | chr2_2:29609723-29609742 | Msa0247420:CDS | 40.0% |
| GAGAAGATGCATCTTGAAGA+TGG | - | chr2_2:29609751-29609770 | None:intergenic | 40.0% | |
| TTCATTCGAAGTATAGGTCG+GGG | + | chr2_2:29609908-29609927 | Msa0247420:CDS | 40.0% | |
| GTGCACACAAAACCAATTAG+AGG | - | chr2_2:29610020-29610039 | None:intergenic | 40.0% | |
| ! | CCCCAACTTTTACATTGTCT+TGG | - | chr2_2:29610123-29610142 | None:intergenic | 40.0% |
| !!! | CTGGTTGCTTTTCATCATTC+AGG | + | chr2_2:29610242-29610261 | Msa0247420:intron | 40.0% |
| ! | TTTTGCGAGATTACAAGGGA+AGG | + | chr2_2:29610267-29610286 | Msa0247420:CDS | 40.0% |
| GGATTTCAGGATGTTTCAGT+TGG | + | chr2_2:29610336-29610355 | Msa0247420:CDS | 40.0% | |
| ATCAATGTCAATGTCGTGTG+TGG | + | chr2_2:29610607-29610626 | Msa0247420:intron | 40.0% | |
| ! | TGGACAAAGTTTTCTCCCTA+TGG | + | chr2_2:29610784-29610803 | Msa0247420:CDS | 40.0% |
| ! | GTGGACAAGAGACATTTTAG+AGG | + | chr2_2:29610858-29610877 | Msa0247420:CDS | 40.0% |
| TGTATCTGCAGATTGAAGTG+GGG | + | chr2_2:29610994-29611013 | Msa0247420:intron | 40.0% | |
| GCATGGTATTAGGTGGTTAA+TGG | + | chr2_2:29611167-29611186 | Msa0247420:intron | 40.0% | |
| CTTCAGATGTCAAGTCTAGA+GGG | + | chr2_2:29611499-29611518 | Msa0247420:intron | 40.0% | |
| !! | CAAAACTGGTTTGTAAGGTG+AGG | - | chr2_2:29611599-29611618 | None:intergenic | 40.0% |
| ATGAACATGAGTGCCAACAA+CGG | - | chr2_2:29611669-29611688 | None:intergenic | 40.0% | |
| TTTACAGGTTTATGTCAGGG+TGG | + | chr2_2:29611727-29611746 | Msa0247420:intron | 40.0% | |
| GAGATGATATACAGTTGGAC+CGG | - | chr2_2:29611791-29611810 | None:intergenic | 40.0% | |
| CAGTGGTGCATAATGAAAGT+TGG | + | chr2_2:29612400-29612419 | Msa0247420:CDS | 40.0% | |
| GTGCATAATGAAAGTTGGGA+TGG | + | chr2_2:29612405-29612424 | Msa0247420:CDS | 40.0% | |
| ACAACACCCTCACACATTTA+GGG | + | chr2_2:29612823-29612842 | Msa0247420:intron | 40.0% | |
| TTCTTTCAAAGCTGTGTGAG+AGG | + | chr2_2:29612929-29612948 | Msa0247420:intron | 40.0% | |
| AGGACTCATGAAGATAAGTG+AGG | - | chr2_2:29613132-29613151 | None:intergenic | 40.0% | |
| GAATGTATCCGTAGCATATC+TGG | + | chr2_2:29613231-29613250 | Msa0247420:intron | 40.0% | |
| ATATGTATGTGCAGGGTTGT+TGG | + | chr2_2:29613505-29613524 | Msa0247420:intron | 40.0% | |
| TGCAAATCCTATACGGAGAT+TGG | - | chr2_2:29613572-29613591 | None:intergenic | 40.0% | |
| !! | TCAATTGAGTTGGGAATCTG+TGG | + | chr2_2:29613810-29613829 | Msa0247420:three_prime_UTR | 40.0% |
| TCATCATACGGGATTTCGCA+AGG | - | chr2_2:29610076-29610095 | None:intergenic | 45.0% | |
| TGCGAAATCCCGTATGATGA+TGG | + | chr2_2:29610076-29610095 | Msa0247420:CDS | 45.0% | |
| CACATGCGTCAGTGTAGTAT+CGG | - | chr2_2:29610539-29610558 | None:intergenic | 45.0% | |
| AAGGATCCAATGGCAGAAGT+AGG | + | chr2_2:29610813-29610832 | Msa0247420:CDS | 45.0% | |
| AGGATCCAATGGCAGAAGTA+GGG | + | chr2_2:29610814-29610833 | Msa0247420:CDS | 45.0% | |
| !! | TGAGATTGTCTTTGGTGGTG+TGG | + | chr2_2:29610839-29610858 | Msa0247420:CDS | 45.0% |
| TTCTCAAGAGGGTTATTGGC+AGG | + | chr2_2:29610902-29610921 | Msa0247420:CDS | 45.0% | |
| GTATCTGCAGATTGAAGTGG+GGG | + | chr2_2:29610995-29611014 | Msa0247420:intron | 45.0% | |
| CACTCATGCTATTCACTCAC+AGG | - | chr2_2:29611123-29611142 | None:intergenic | 45.0% | |
| CGAAATCAGCTCGTAAGGTT+GGG | - | chr2_2:29611384-29611403 | None:intergenic | 45.0% | |
| ACGAAATCAGCTCGTAAGGT+TGG | - | chr2_2:29611385-29611404 | None:intergenic | 45.0% | |
| ! | ACCTTACGAGCTGATTTCGT+AGG | + | chr2_2:29611385-29611404 | Msa0247420:intron | 45.0% |
| ACCTACGAAATCAGCTCGTA+AGG | - | chr2_2:29611389-29611408 | None:intergenic | 45.0% | |
| ACTCGAGGAAACATGATAGC+GGG | - | chr2_2:29611475-29611494 | None:intergenic | 45.0% | |
| GACTCGAGGAAACATGATAG+CGG | - | chr2_2:29611476-29611495 | None:intergenic | 45.0% | |
| GCTTCAGATGTCAAGTCTAG+AGG | + | chr2_2:29611498-29611517 | Msa0247420:intron | 45.0% | |
| ATGTCAAGTCTAGAGGGTGA+TGG | + | chr2_2:29611505-29611524 | Msa0247420:intron | 45.0% | |
| TGTCAAGTCTAGAGGGTGAT+GGG | + | chr2_2:29611506-29611525 | Msa0247420:intron | 45.0% | |
| TCGGGGACTACTTTAATTGC+CGG | + | chr2_2:29611769-29611788 | Msa0247420:CDS | 45.0% | |
| AACCATGCCATTGGAACAGA+AGG | + | chr2_2:29611895-29611914 | Msa0247420:CDS | 45.0% | |
| ATCCTTCTGTTCCAATGGCA+TGG | - | chr2_2:29611900-29611919 | None:intergenic | 45.0% | |
| GACAACACCCTCACACATTT+AGG | + | chr2_2:29612822-29612841 | Msa0247420:intron | 45.0% | |
| CTTCGTCCCTAAATGTGTGA+GGG | - | chr2_2:29612832-29612851 | None:intergenic | 45.0% | |
| TCTTCGTCCCTAAATGTGTG+AGG | - | chr2_2:29612833-29612852 | None:intergenic | 45.0% | |
| AACGATTGTCCAACCGGATT+TGG | - | chr2_2:29612958-29612977 | None:intergenic | 45.0% | |
| TGTTCTCCTGTGTGCTATAG+CGG | + | chr2_2:29613329-29613348 | Msa0247420:CDS | 45.0% | |
| ACAAAACCGCTATAGCACAC+AGG | - | chr2_2:29613338-29613357 | None:intergenic | 45.0% | |
| TTGGGAAAGTCACACCAGTG+TGG | + | chr2_2:29610355-29610374 | Msa0247420:CDS | 50.0% | |
| CACTGACACGTGTAAGAGAC+TGG | - | chr2_2:29610509-29610528 | None:intergenic | 50.0% | |
| CGATACTACACTGACGCATG+TGG | + | chr2_2:29610537-29610556 | Msa0247420:intron | 50.0% | |
| GGATCCAATGGCAGAAGTAG+GGG | + | chr2_2:29610815-29610834 | Msa0247420:CDS | 50.0% | |
| GATCCAATGGCAGAAGTAGG+GGG | + | chr2_2:29610816-29610835 | Msa0247420:CDS | 50.0% | |
| GTAGGGGGTGAGATTGTCTT+TGG | + | chr2_2:29610831-29610850 | Msa0247420:CDS | 50.0% | |
| !! | TCGAGGAAACATGATAGCGG+GGG | - | chr2_2:29611473-29611492 | None:intergenic | 50.0% |
| ! | CTCGAGGAAACATGATAGCG+GGG | - | chr2_2:29611474-29611493 | None:intergenic | 50.0% |
| ! | GACATCTGAAGCATGACTCG+AGG | - | chr2_2:29611490-29611509 | None:intergenic | 50.0% |
| !! | AAATACGCTGGTGCCGTTGT+TGG | + | chr2_2:29611653-29611672 | Msa0247420:intron | 50.0% |
| !! | CTGTGCTGCAATAGTGGACT+CGG | + | chr2_2:29611750-29611769 | Msa0247420:CDS | 50.0% |
| !! | TGTGCTGCAATAGTGGACTC+GGG | + | chr2_2:29611751-29611770 | Msa0247420:CDS | 50.0% |
| GACTATCCACCTACGAAGCA+CGG | + | chr2_2:29612031-29612050 | Msa0247420:intron | 50.0% | |
| TGTTCGTATCCGTGCTTCGT+AGG | - | chr2_2:29612043-29612062 | None:intergenic | 50.0% | |
| ACGAAGCACGGATACGAACA+CGG | + | chr2_2:29612043-29612062 | Msa0247420:intron | 50.0% | |
| TATGTGTCAGTGTCCGACAC+CGG | + | chr2_2:29612122-29612141 | Msa0247420:intron | 50.0% | |
| GTGTGAGAGGCTTCCAAATC+CGG | + | chr2_2:29612942-29612961 | Msa0247420:CDS | 50.0% | |
| GTTTCCTCTCTCTCCAGAAC+AGG | + | chr2_2:29613038-29613057 | Msa0247420:CDS | 50.0% | |
| !! | CAAACCTGTTCTGGAGAGAG+AGG | - | chr2_2:29613045-29613064 | None:intergenic | 50.0% |
| GACTACGCCAATCTCCGTAT+AGG | + | chr2_2:29613562-29613581 | Msa0247420:CDS | 50.0% | |
| TCACCCCCTACTTCTGCCAT+TGG | - | chr2_2:29610822-29610841 | None:intergenic | 55.0% | |
| GGGGGTGAGATTGTCTTTGG+TGG | + | chr2_2:29610834-29610853 | Msa0247420:CDS | 55.0% | |
| !! | CGAGGAAACATGATAGCGGG+GGG | - | chr2_2:29611472-29611491 | None:intergenic | 55.0% |
| !! | GTGCTGCAATAGTGGACTCG+GGG | + | chr2_2:29611752-29611771 | Msa0247420:CDS | 55.0% |
| TCGTATCCGTGCTTCGTAGG+TGG | - | chr2_2:29612040-29612059 | None:intergenic | 55.0% | |
| ATGTGTCAGTGTCCGACACC+GGG | + | chr2_2:29612123-29612142 | Msa0247420:intron | 55.0% | |
| AATTAGGCGTGTCCCGGTGT+CGG | - | chr2_2:29612138-29612157 | None:intergenic | 55.0% | |
| TCCTCGAATTAGGCGTGTCC+CGG | - | chr2_2:29612144-29612163 | None:intergenic | 55.0% | |
| GCACGGACACTCCTCGAATT+AGG | - | chr2_2:29612154-29612173 | None:intergenic | 55.0% | |
| GAGAGGCTTCCAAATCCGGT+TGG | + | chr2_2:29612946-29612965 | Msa0247420:CDS | 55.0% | |
| TCTTGATGTGCCTTCCCCAC+AGG | + | chr2_2:29613361-29613380 | Msa0247420:CDS | 55.0% | |
| CTTGATGTGCCTTCCCCACA+GGG | + | chr2_2:29613362-29613381 | Msa0247420:CDS | 55.0% | |
| ATTACCAGAGGGGACCCTGT+GGG | - | chr2_2:29613379-29613398 | None:intergenic | 55.0% | |
| TATTACCAGAGGGGACCCTG+TGG | - | chr2_2:29613380-29613399 | None:intergenic | 55.0% | |
| ! | GCGGGGGGCCTAACGTATTT+TGG | - | chr2_2:29611457-29611476 | None:intergenic | 60.0% |
| GGGTGGCTGTGCTGCAATAG+TGG | + | chr2_2:29611744-29611763 | Msa0247420:CDS | 60.0% | |
| ACCGGGACACGCCTAATTCG+AGG | + | chr2_2:29612140-29612159 | Msa0247420:intron | 60.0% | |
| TTACCAGAGGGGACCCTGTG+GGG | - | chr2_2:29613378-29613397 | None:intergenic | 60.0% | |
| CAGAGGGGACCCTGTGGGGA+AGG | - | chr2_2:29613374-29613393 | None:intergenic | 70.0% | |
| CTTCCCCACAGGGTCCCCTC+TGG | + | chr2_2:29613372-29613391 | Msa0247420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 29609057 | 29613839 | 29609057 | ID=Msa0247420;Name=Msa0247420 |
| chr2_2 | mRNA | 29609057 | 29613839 | 29609057 | ID=Msa0247420-mRNA-1;Parent=Msa0247420;Name=Msa0247420-mRNA-1;_AED=0.25;_eAED=0.25;_QI=165|0.92|0.92|1|0.92|0.92|14|236|513 |
| chr2_2 | exon | 29609057 | 29609221 | 29609057 | ID=Msa0247420-mRNA-1:exon:10508;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29609430 | 29609771 | 29609430 | ID=Msa0247420-mRNA-1:exon:10509;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29609895 | 29609955 | 29609895 | ID=Msa0247420-mRNA-1:exon:10510;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29610068 | 29610162 | 29610068 | ID=Msa0247420-mRNA-1:exon:10511;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29610264 | 29610376 | 29610264 | ID=Msa0247420-mRNA-1:exon:10512;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29610755 | 29610923 | 29610755 | ID=Msa0247420-mRNA-1:exon:10513;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29611005 | 29611044 | 29611005 | ID=Msa0247420-mRNA-1:exon:10514;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29611734 | 29611798 | 29611734 | ID=Msa0247420-mRNA-1:exon:10515;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29611877 | 29611990 | 29611877 | ID=Msa0247420-mRNA-1:exon:10516;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29612232 | 29612296 | 29612232 | ID=Msa0247420-mRNA-1:exon:10517;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29612386 | 29612542 | 29612386 | ID=Msa0247420-mRNA-1:exon:10518;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29612940 | 29613059 | 29612940 | ID=Msa0247420-mRNA-1:exon:10519;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29613278 | 29613393 | 29613278 | ID=Msa0247420-mRNA-1:exon:10520;Parent=Msa0247420-mRNA-1 |
| chr2_2 | exon | 29613519 | 29613839 | 29613519 | ID=Msa0247420-mRNA-1:exon:10521;Parent=Msa0247420-mRNA-1 |
| chr2_2 | five_prime_UTR | 29609057 | 29609221 | 29609057 | ID=Msa0247420-mRNA-1:five_prime_utr;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29609430 | 29609771 | 29609430 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29609895 | 29609955 | 29609895 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29610068 | 29610162 | 29610068 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29610264 | 29610376 | 29610264 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29610755 | 29610923 | 29610755 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29611005 | 29611044 | 29611005 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29611734 | 29611798 | 29611734 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29611877 | 29611990 | 29611877 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29612232 | 29612296 | 29612232 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29612386 | 29612542 | 29612386 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29612940 | 29613059 | 29612940 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29613278 | 29613393 | 29613278 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | CDS | 29613519 | 29613603 | 29613519 | ID=Msa0247420-mRNA-1:cds;Parent=Msa0247420-mRNA-1 |
| chr2_2 | three_prime_UTR | 29613604 | 29613839 | 29613604 | ID=Msa0247420-mRNA-1:three_prime_utr;Parent=Msa0247420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
