AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379070 MtrunA17_Chr2g0285371 90.909 462 42 0 11 472 8 469 0.0 870
Msa1379070 MtrunA17_Chr2g0285351 85.097 463 67 2 11 472 8 469 0.0 832
Msa1379070 MtrunA17_Chr2g0285381 76.321 473 103 3 1 472 1 465 0.0 732
Msa1379070 MtrunA17_Chr3g0133011 65.086 464 154 4 16 472 34 496 0.0 629
Msa1379070 MtrunA17_Chr4g0009701 62.584 449 161 5 25 472 28 470 0.0 575
Msa1379070 MtrunA17_Chr4g0009681 60.684 468 176 6 7 472 6 467 0.0 568
Msa1379070 MtrunA17_Chr4g0009661 60.802 449 169 5 25 472 28 470 0.0 565
Msa1379070 MtrunA17_Chr4g0009651 60.134 449 172 5 25 472 28 470 0.0 558
Msa1379070 MtrunA17_Chr4g0009711 58.388 459 180 6 19 472 18 470 0.0 535
Msa1379070 MtrunA17_Chr4g0009671 60.557 431 163 5 43 472 11 435 0.0 535
Msa1379070 MtrunA17_Chr4g0009641 57.330 457 160 7 17 472 24 446 0.0 523
Msa1379070 MtrunA17_Chr4g0009721 50.641 468 176 7 7 472 5 419 4.62e-158 454
Msa1379070 MtrunA17_Chr3g0093971 42.888 457 239 6 17 468 11 450 2.14e-130 385
Msa1379070 MtrunA17_Chr7g0249431 39.000 500 255 10 14 472 8 498 1.44e-119 359
Msa1379070 MtrunA17_Chr8g0338461 38.934 488 261 8 14 468 8 491 4.76e-119 357
Msa1379070 MtrunA17_Chr7g0234051 38.683 486 262 7 16 468 9 491 3.56e-118 355
Msa1379070 MtrunA17_Chr7g0234041 35.745 470 227 11 16 436 6 449 2.92e-86 272
Msa1379070 MtrunA17_Chr4g0038311 31.224 474 300 14 11 472 3 462 4.42e-65 217
Msa1379070 MtrunA17_Chr1g0199971 29.449 472 295 15 17 472 6 455 6.40e-60 203
Msa1379070 MtrunA17_Chr2g0309541 28.661 478 304 13 11 472 6 462 1.17e-59 202
Msa1379070 MtrunA17_Chr1g0199991 31.423 471 283 17 19 472 8 455 3.09e-59 201
Msa1379070 MtrunA17_Chr2g0309521 30.405 444 281 14 36 472 39 461 1.07e-57 197
Msa1379070 MtrunA17_Chr2g0309511 30.405 444 281 12 36 472 39 461 1.84e-57 197
Msa1379070 MtrunA17_Chr8g0385871 31.144 472 285 15 17 472 14 461 3.38e-57 196
Msa1379070 MtrunA17_Chr7g0219051 30.310 452 269 14 40 472 39 463 3.39e-57 196
Msa1379070 MtrunA17_Chr2g0318911 29.424 486 305 15 1 472 1 462 1.53e-56 194
Msa1379070 MtrunA17_Chr2g0281621 31.448 442 276 15 36 467 35 459 8.50e-56 192
Msa1379070 MtrunA17_Chr3g0094811 28.604 444 275 13 44 472 37 453 3.45e-54 188
Msa1379070 MtrunA17_Chr5g0431301 28.692 474 302 14 16 472 6 460 4.66e-54 188
Msa1379070 MtrunA17_Chr3g0131731 29.087 471 296 13 18 472 12 460 1.89e-53 186
Msa1379070 MtrunA17_Chr2g0279371 47.059 187 84 1 21 207 12 183 1.96e-53 177
Msa1379070 MtrunA17_Chr4g0068841 28.506 435 283 13 53 472 55 476 2.10e-53 186
Msa1379070 MtrunA17_Chr3g0090331 29.025 441 282 11 37 472 75 489 5.60e-52 183
Msa1379070 MtrunA17_Chr4g0047861 30.317 442 283 15 36 467 53 479 1.08e-51 182
Msa1379070 MtrunA17_Chr3g0126031 28.982 452 282 13 36 472 28 455 5.79e-51 179
Msa1379070 MtrunA17_Chr3g0126051 28.306 484 293 16 16 472 6 462 8.09e-51 179
Msa1379070 MtrunA17_Chr3g0118851 31.034 435 262 15 40 467 81 484 1.06e-50 179
Msa1379070 MtrunA17_Chr7g0221551 28.392 479 302 14 9 472 4 456 3.22e-50 177
Msa1379070 MtrunA17_Chr1g0153881 31.881 436 258 14 37 467 90 491 1.48e-49 176
Msa1379070 MtrunA17_Chr4g0020241 28.989 445 275 14 37 472 74 486 1.21e-48 174
Msa1379070 MtrunA17_Chr3g0118841 29.167 432 273 12 40 467 82 484 1.32e-48 174
Msa1379070 MtrunA17_Chr2g0304931 27.907 430 272 12 55 471 56 460 1.07e-47 171
Msa1379070 MtrunA17_Chr2g0327401 27.854 438 259 14 53 472 102 500 1.34e-47 171
Msa1379070 MtrunA17_Chr4g0028271 26.389 432 262 10 53 467 99 491 1.35e-46 168
Msa1379070 MtrunA17_Chr1g0171411 26.437 435 257 10 53 466 85 477 6.14e-46 166
Msa1379070 MtrunA17_Chr4g0068861 28.571 406 256 15 40 428 88 476 1.18e-45 165
Msa1379070 MtrunA17_Chr3g0118881 28.798 441 272 13 40 467 81 492 1.84e-45 165
Msa1379070 MtrunA17_Chr4g0028261 28.271 428 260 13 53 467 120 513 5.52e-45 164
Msa1379070 MtrunA17_Chr1g0153941 29.284 461 264 15 37 467 78 506 3.00e-44 162
Msa1379070 MtrunA17_Chr3g0118831 27.586 435 252 13 37 467 78 453 7.77e-44 160
Msa1379070 MtrunA17_Chr4g0028281 25.522 431 273 9 53 470 97 492 7.92e-44 160
Msa1379070 MtrunA17_Chr2g0281641 29.545 396 251 13 89 472 7 386 2.64e-43 157
Msa1379070 MtrunA17_Chr3g0118861 27.477 444 252 13 37 467 76 462 9.95e-43 157
Msa1379070 MtrunA17_Chr1g0199171 26.588 425 270 14 52 466 91 483 3.24e-42 156
Msa1379070 MtrunA17_Chr4g0028241 25.629 437 267 10 54 470 92 490 4.52e-42 156
Msa1379070 MtrunA17_Chr2g0327381 27.391 460 274 14 53 470 96 537 7.55e-42 156
Msa1379070 MtrunA17_Chr3g0118891 28.176 433 244 14 40 467 81 451 1.35e-41 154
Msa1379070 MtrunA17_Chr2g0279381 38.049 205 118 4 229 430 13 211 1.10e-38 139
Msa1379070 MtrunA17_Chr1g0204191 27.397 438 245 16 53 472 107 489 2.34e-37 143
Msa1379070 MtrunA17_Chr5g0447441 25.917 436 268 13 52 472 42 437 1.92e-36 139
Msa1379070 MtrunA17_Chr2g0327371 34.419 215 118 5 40 253 79 271 4.78e-32 128
Msa1379070 MtrunA17_Chr2g0285401 80.645 62 12 0 375 436 29 90 6.69e-30 112
Msa1379070 MtrunA17_Chr4g0044051 24.424 434 277 12 52 472 46 441 2.37e-29 119
Msa1379070 MtrunA17_Chr1g0153931 35.870 184 110 4 37 217 76 254 1.91e-28 113
Msa1379070 MtrunA17_Chr1g0165811 29.302 215 136 6 44 255 37 238 1.03e-23 100
Msa1379070 MtrunA17_Chr1g0165821 32.867 143 84 4 338 472 39 177 6.09e-19 84.3
Msa1379070 MtrunA17_Chr1g0153921 31.140 228 130 10 241 467 9 210 8.67e-17 79.3
Msa1379070 MtrunA17_Chr6g0457241 53.571 56 26 0 397 452 1 56 1.99e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379070 AT5G09640.1 53.763 465 202 8 16 472 6 465 3.37e-177 505
Msa1379070 AT2G22920.2 54.751 442 169 5 34 472 22 435 9.23e-175 498
Msa1379070 AT1G73300.1 55.730 445 168 4 29 472 25 441 1.53e-174 497
Msa1379070 AT1G73300.2 55.730 445 168 4 29 472 25 441 1.53e-174 497
Msa1379070 AT1G33540.1 54.195 441 198 4 34 472 26 464 1.88e-173 495
Msa1379070 AT3G10450.1 53.933 445 176 4 29 472 21 437 8.58e-173 493
Msa1379070 AT5G36180.1 55.955 445 167 4 29 472 25 441 4.03e-172 491
Msa1379070 AT1G73280.1 53.173 457 182 5 20 472 13 441 2.33e-171 489
Msa1379070 AT2G22970.1 53.182 440 177 4 34 472 22 433 3.22e-171 488
Msa1379070 AT1G73290.1 53.483 445 176 5 29 472 24 438 2.44e-168 481
Msa1379070 AT1G73270.2 54.318 440 172 3 34 472 30 441 2.89e-168 481
Msa1379070 AT1G73270.1 54.318 440 172 3 34 472 30 441 3.63e-168 481
Msa1379070 AT2G22980.1 53.604 444 171 6 31 472 20 430 6.42e-168 480
Msa1379070 AT1G73310.1 53.708 445 177 4 29 472 25 441 7.47e-168 480
Msa1379070 AT2G23000.1 54.091 440 177 4 34 472 22 437 2.46e-167 479
Msa1379070 AT2G23000.2 54.091 440 177 4 34 472 22 437 2.46e-167 479
Msa1379070 AT2G22990.1 54.091 440 175 5 34 472 20 433 3.07e-167 478
Msa1379070 AT2G23010.1 52.402 458 190 5 16 472 7 437 4.20e-167 478
Msa1379070 AT2G23010.2 51.965 458 192 5 16 472 7 437 1.50e-165 474
Msa1379070 AT3G12203.1 51.310 458 188 4 16 472 14 437 5.26e-165 473
Msa1379070 AT3G12203.3 52.045 440 181 3 34 472 6 416 7.89e-164 469
Msa1379070 AT1G33540.2 54.048 420 189 4 55 472 4 421 3.08e-163 468
Msa1379070 AT2G22970.3 53.125 416 167 3 34 448 22 410 2.25e-161 464
Msa1379070 AT2G22970.4 53.140 414 166 3 34 446 22 408 3.53e-161 462
Msa1379070 AT3G10450.2 53.222 419 167 4 55 472 4 394 1.63e-160 460
Msa1379070 AT3G10450.4 53.461 419 167 3 29 446 21 412 3.00e-160 460
Msa1379070 AT2G22990.5 52.727 440 172 6 34 472 20 424 4.80e-159 457
Msa1379070 AT2G22980.2 53.110 418 162 5 31 446 20 405 2.53e-156 450
Msa1379070 AT2G22980.4 51.963 433 172 6 31 459 20 420 2.77e-156 451
Msa1379070 AT2G22990.3 52.093 430 177 5 34 459 20 424 9.29e-154 445
Msa1379070 AT2G22990.4 53.140 414 168 4 34 446 20 408 1.51e-153 443
Msa1379070 AT2G22920.1 53.117 401 158 4 34 431 22 395 9.73e-153 441
Msa1379070 AT3G12240.1 49.103 446 198 4 28 472 19 436 1.95e-152 441
Msa1379070 AT3G12230.1 48.984 443 197 4 31 472 21 435 2.25e-150 436
Msa1379070 AT1G73310.2 52.696 408 165 3 29 435 25 405 4.83e-150 434
Msa1379070 AT1G73290.3 52.723 404 161 4 29 431 24 398 3.25e-148 429
Msa1379070 AT3G10450.3 52.672 393 158 3 55 446 4 369 5.87e-148 427
Msa1379070 AT3G12220.1 49.210 443 196 3 31 472 21 435 1.04e-147 429
Msa1379070 AT3G12203.2 50.490 408 172 3 66 472 1 379 2.61e-144 418
Msa1379070 AT3G12220.2 48.210 419 188 3 55 472 15 405 1.81e-134 394
Msa1379070 AT1G73280.2 50.532 376 155 4 20 391 13 361 6.62e-126 371
Msa1379070 AT5G36180.5 52.316 367 146 4 107 472 1 339 2.33e-125 368
Msa1379070 AT5G36180.3 52.316 367 146 4 107 472 1 339 2.33e-125 368
Msa1379070 AT1G73280.4 50.409 367 153 4 107 472 1 339 1.12e-123 364
Msa1379070 AT4G12910.1 39.264 489 256 8 13 467 11 492 9.92e-123 367
Msa1379070 AT2G22980.3 49.315 365 149 6 31 391 20 352 3.76e-117 348
Msa1379070 AT5G36180.2 52.047 342 136 3 107 447 1 315 1.53e-115 342
Msa1379070 AT2G22990.6 51.014 345 142 5 129 472 1 319 5.42e-115 341
Msa1379070 AT2G22990.2 50.435 345 144 5 129 472 1 319 2.11e-113 337
Msa1379070 AT1G73280.3 50.292 342 141 4 132 472 1 314 2.75e-113 337
Msa1379070 AT3G25420.1 35.887 496 282 9 11 472 1 494 5.12e-113 342
Msa1379070 AT2G22920.4 50.625 320 130 3 34 352 22 314 1.72e-112 335
Msa1379070 AT2G22970.2 50.157 319 132 3 34 352 22 313 5.18e-112 333
Msa1379070 AT5G36180.4 49.425 348 146 4 107 451 1 321 8.69e-105 316
Msa1379070 AT4G12910.2 37.832 452 240 8 13 430 11 455 4.50e-103 315
Msa1379070 AT1G73290.2 55.556 261 113 2 34 293 29 287 1.88e-102 308
Msa1379070 AT1G73310.3 47.879 330 144 3 107 435 1 303 2.39e-102 309
Msa1379070 AT2G22980.5 48.750 320 130 5 129 446 1 288 2.45e-99 300
Msa1379070 AT2G22920.3 52.128 282 104 5 194 472 3 256 2.48e-95 288
Msa1379070 AT3G12220.3 53.191 235 109 1 31 264 21 255 2.29e-79 252
Msa1379070 AT3G12220.3 53.793 145 66 1 328 472 240 383 3.41e-46 165
Msa1379070 AT5G23210.1 31.692 467 288 14 27 472 38 494 3.85e-64 216
Msa1379070 AT4G30810.1 30.090 442 285 11 37 472 38 461 7.62e-63 212
Msa1379070 AT3G52000.1 29.801 453 265 13 36 472 63 478 1.94e-61 208
Msa1379070 AT4G30610.1 32.292 480 276 17 16 472 8 461 4.47e-61 207
Msa1379070 AT3G52020.1 30.201 447 274 11 36 472 79 497 6.77e-59 202
Msa1379070 AT3G17180.1 29.977 437 272 14 53 472 55 474 7.20e-59 201
Msa1379070 AT2G22960.1 66.176 136 45 1 337 472 50 184 1.13e-58 191
Msa1379070 AT4G15100.1 30.638 470 297 15 16 467 17 475 1.42e-58 201
Msa1379070 AT5G08260.1 31.473 448 285 15 36 472 39 475 3.57e-58 199
Msa1379070 AT3G52010.1 28.667 450 278 12 36 472 64 483 7.00e-58 199
Msa1379070 AT2G05850.1 28.850 461 264 18 36 472 63 483 6.76e-56 193
Msa1379070 AT2G24000.1 29.821 446 287 13 37 472 31 460 7.62e-56 192
Msa1379070 AT3G63470.1 28.959 442 283 11 36 472 81 496 1.37e-55 193
Msa1379070 AT3G07990.1 30.090 442 278 15 40 472 37 456 1.43e-55 192
Msa1379070 AT2G35780.1 31.011 445 268 16 40 472 33 450 3.23e-55 191
Msa1379070 AT2G24010.1 30.337 445 278 15 36 472 30 450 7.43e-54 187
Msa1379070 AT1G11080.1 31.473 448 279 14 36 468 50 484 9.27e-53 185
Msa1379070 AT1G61130.1 29.844 449 275 15 36 468 31 455 1.03e-52 184
Msa1379070 AT1G11080.2 31.473 448 279 14 36 468 50 484 1.25e-52 185
Msa1379070 AT5G23210.3 31.206 423 261 13 27 428 38 451 1.49e-52 184
Msa1379070 AT3G02110.1 29.844 449 280 14 40 472 41 470 2.12e-52 184
Msa1379070 AT2G35770.1 30.201 447 268 12 40 472 41 457 2.95e-52 183
Msa1379070 AT5G22980.1 30.162 431 252 14 53 470 100 494 1.30e-50 180
Msa1379070 AT2G33530.1 27.646 463 267 15 40 472 37 461 2.22e-50 178
Msa1379070 AT1G43780.1 28.105 459 282 14 36 472 37 469 3.03e-50 178
Msa1379070 AT1G28110.1 29.111 450 281 13 37 472 32 457 6.51e-50 177
Msa1379070 AT1G28110.2 29.111 450 281 13 37 472 32 457 6.51e-50 177
Msa1379070 AT2G24010.2 29.130 460 279 16 36 472 30 465 8.43e-49 174
Msa1379070 AT5G23210.5 30.175 401 254 12 89 472 8 399 1.95e-48 171
Msa1379070 AT5G42240.1 29.139 453 284 16 36 472 32 463 3.39e-48 172
Msa1379070 AT2G12480.3 27.679 448 291 14 36 472 31 456 7.77e-48 171
Msa1379070 AT3G17180.2 29.545 396 245 14 53 431 55 433 1.18e-47 170
Msa1379070 AT5G23210.2 30.000 400 254 12 90 472 8 398 1.68e-47 169
Msa1379070 AT3G45010.1 27.378 431 274 12 49 470 99 499 2.65e-47 171
Msa1379070 AT3G10410.1 27.830 424 265 13 53 467 101 492 3.37e-46 168
Msa1379070 AT2G12480.4 27.009 448 270 13 36 472 31 432 1.36e-45 165
Msa1379070 AT2G12480.1 26.786 448 269 13 36 472 31 430 1.32e-44 162
Msa1379070 AT5G42230.1 27.556 450 295 14 36 472 28 459 2.63e-44 162
Msa1379070 AT5G42230.2 27.556 450 295 14 36 472 28 459 2.63e-44 162
Msa1379070 AT2G24010.3 27.629 485 279 17 36 472 1 461 8.64e-44 160
Msa1379070 AT2G12480.2 26.726 449 269 14 36 472 31 431 5.60e-43 157
Msa1379070 AT5G23210.4 29.213 356 227 11 90 428 8 355 5.71e-36 137
Msa1379070 AT2G24010.4 29.310 348 202 14 36 362 1 325 2.48e-30 121
Msa1379070 AT1G15000.1 23.963 434 274 14 52 472 36 426 5.49e-29 119
Msa1379070 AT3G56540.1 35.669 157 94 3 36 191 79 229 2.21e-27 110
Msa1379070 AT5G22960.1 29.878 164 90 2 53 216 36 174 8.99e-24 98.6
Msa1379070 AT2G24000.2 26.207 290 197 8 190 472 118 397 3.23e-22 99.0

Find 156 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTGCCCTTATCATAAT+TGG 0.109593 tig0020262:+35294 Msa1379070:intergenic
CATATTTCCTTATGGGTTAT+TGG 0.147425 tig0020262:-31640 Msa1379070:CDS
GAGAAACTTAGGTAACTTTA+AGG 0.165900 tig0020262:-30039 Msa1379070:three_prime_UTR
TCATTCATTGCTAAATTATA+TGG 0.220119 tig0020262:+35383 Msa1379070:intergenic
AGATTTCATGATTTCCTCTT+TGG 0.245184 tig0020262:-34936 Msa1379070:CDS
AGGCTTCATTCTCTACGTTT+TGG 0.249270 tig0020262:-30076 Msa1379070:three_prime_UTR
TTGTTTGCAGGAAATGAAAA+AGG 0.253261 tig0020262:-32647 Msa1379070:intron
CTATGTCTTCCAACACTCTA+AGG 0.266936 tig0020262:-34994 Msa1379070:five_prime_UTR
AGCATTCATAATTTCCTCTT+TGG 0.267904 tig0020262:-35732 Msa1379070:five_prime_UTR
ATATTTCCTTATGGGTTATT+GGG 0.271697 tig0020262:-31639 Msa1379070:CDS
TACACCAATGAATAAAATTC+AGG 0.271940 tig0020262:-29973 Msa1379070:three_prime_UTR
GAGTTATACATATTTCCTTA+TGG 0.272703 tig0020262:-31648 Msa1379070:CDS
TCTGGCCTTATGCTTGAAAT+TGG 0.277015 tig0020262:-34565 Msa1379070:intron
TGACATGATAGTTCCATTCT+TGG 0.281474 tig0020262:-31164 Msa1379070:CDS
AACCCGGTTTCAAGCATAAA+AGG 0.293014 tig0020262:+35609 Msa1379070:intergenic
TCCATAGTGCAGTTTCTTCC+TGG 0.300810 tig0020262:-35648 Msa1379070:five_prime_UTR
ACTATTCCATTGTTGATGAT+TGG 0.322769 tig0020262:-31114 Msa1379070:CDS
TCGCCCATTGCCTATATTGT+TGG 0.326906 tig0020262:-35845 Msa1379070:five_prime_UTR
ACTTCATTTGATTGAAACTT+TGG 0.327111 tig0020262:+32836 Msa1379070:intergenic
GAGCTGACATAACAAATAAA+TGG 0.328986 tig0020262:-35763 Msa1379070:five_prime_UTR
TATTATATTTGTAGATTTGC+CGG 0.329137 tig0020262:-33075 Msa1379070:CDS
TCAAATGAAGTTTACATTGC+TGG 0.337164 tig0020262:-32824 Msa1379070:CDS
ACATGATAATCATAGCTGTT+AGG 0.338091 tig0020262:+31333 Msa1379070:intergenic
AATATAGGCAATGGACGAAA+TGG 0.338994 tig0020262:+35038 Msa1379070:intergenic
TTTCTTTAGGGATACTTGTT+GGG 0.341742 tig0020262:-32312 Msa1379070:intron
TCTTCACCCAATTATGATAA+GGG 0.343589 tig0020262:-35301 Msa1379070:five_prime_UTR
TTTCAAGTGTAAAGTGAAAC+TGG 0.350590 tig0020262:-30341 Msa1379070:three_prime_UTR
CATTCTTTAGGCCGGTATTC+CGG 0.351637 tig0020262:+30441 Msa1379070:intergenic
GAGATTTGTGCTGAGGAAAT+TGG 0.355841 tig0020262:+31798 Msa1379070:intergenic
AGGATGATCCTCTCATACTA+TGG 0.360528 tig0020262:-34618 Msa1379070:CDS
CCTGGTTGCTCTGCTTTGTC+TGG 0.360578 tig0020262:-34583 Msa1379070:CDS
CCTCTCATTCTATGGCTAAC+TGG 0.363733 tig0020262:-35410 Msa1379070:five_prime_UTR
TTAGGGATATCCAACTTATA+AGG 0.363956 tig0020262:+31351 Msa1379070:intergenic
AAAATTAATGATTGAAAGTT+CGG 0.364629 tig0020262:-30307 Msa1379070:three_prime_UTR
GCATTCGTTCACTAATTTAC+AGG 0.365116 tig0020262:-31293 Msa1379070:intron
TTTGCGAACATTATCATCAT+TGG 0.369155 tig0020262:+31616 Msa1379070:intergenic
AGTTATACATATTTCCTTAT+GGG 0.370329 tig0020262:-31647 Msa1379070:CDS
TTCTTCACCCAATTATGATA+AGG 0.372508 tig0020262:-35302 Msa1379070:five_prime_UTR
CTTTCTTTAGGGATACTTGT+TGG 0.381040 tig0020262:-32313 Msa1379070:intron
AATTACCAATTTCAAGCATA+AGG 0.381861 tig0020262:+34560 Msa1379070:intergenic
TCTATAGTAAAGTTTCTTCC+TGG 0.395127 tig0020262:-34846 Msa1379070:CDS
AGGAGGATCCTCTCATTCTA+TGG 0.395516 tig0020262:-35418 Msa1379070:five_prime_UTR
CCTCTCATACTATGGCTAAC+TGG 0.396512 tig0020262:-34610 Msa1379070:CDS
ACTTATGCCACAACAGAATC+TGG 0.397364 tig0020262:-33038 Msa1379070:CDS
ACAACAAAGGCCAACAATAT+AGG 0.401573 tig0020262:+35835 Msa1379070:intergenic
CATACAAATGACCAAGTTGC+AGG 0.404512 tig0020262:-31082 Msa1379070:CDS
GTTCTCTTGAAAGGTTCTCT+TGG 0.413535 tig0020262:-29998 Msa1379070:three_prime_UTR
GCACTATTTGCCACAATTCA+AGG 0.421226 tig0020262:-35212 Msa1379070:five_prime_UTR
GCATAAAAGGAAGGGGTCCT+TGG 0.426486 tig0020262:+35622 Msa1379070:intergenic
CATGATAATCATAGCTGTTA+GGG 0.426927 tig0020262:+31334 Msa1379070:intergenic
ACAACAAGGGACAATAATAT+AGG 0.429851 tig0020262:+35023 Msa1379070:intergenic
AACTTATCAATTTCTAAGAA+AGG 0.434513 tig0020262:-32982 Msa1379070:intron
CATGTAAATCTCAGTAGAAA+AGG 0.435691 tig0020262:-31315 Msa1379070:CDS
GTACAAAAGGAAGGGGTCCT+TGG 0.436146 tig0020262:+34820 Msa1379070:intergenic
TCTTGATTAATTAGGTATGT+TGG 0.436860 tig0020262:-34703 Msa1379070:intron
AGAATGAGAGGATCCTCCTT+TGG 0.438181 tig0020262:+35422 Msa1379070:intergenic
GGCAAATAGTGCATTGTGAT+TGG 0.444855 tig0020262:+35223 Msa1379070:intergenic
TGTGGGAGTGGGAGAGAAAG+AGG 0.447442 tig0020262:-35486 Msa1379070:five_prime_UTR
GACACACAGCTCCGGAATAC+CGG 0.450257 tig0020262:-30452 Msa1379070:CDS
ATTAATTAGGTATGTTGGAG+TGG 0.450452 tig0020262:-34698 Msa1379070:intron
AGTATGAGAGGATCATCCTT+TGG 0.453644 tig0020262:+34622 Msa1379070:intergenic
TAAGTGAAGCCTGTGGAAAC+CGG 0.454907 tig0020262:+33056 Msa1379070:intergenic
AGTCCCATTCCATGAGCAAA+AGG 0.456013 tig0020262:+32249 Msa1379070:intergenic
GCTTCAAGAGAGAGAAACTT+AGG 0.458857 tig0020262:-30050 Msa1379070:three_prime_UTR
GATAGTAAAAGAAGAAGAAA+AGG 0.459203 tig0020262:+35702 Msa1379070:intergenic
ATCATAATTGGGTGAAGAAA+CGG 0.464404 tig0020262:+35306 Msa1379070:intergenic
CATGCTTGTGTTGCCAAGAA+TGG 0.464724 tig0020262:+31151 Msa1379070:intergenic
GGAAGGGGTCCTTGGAATCC+AGG 0.464903 tig0020262:+34828 Msa1379070:intergenic
GGAAGGGGTCCTTGGAATCC+AGG 0.464903 tig0020262:+35630 Msa1379070:intergenic
GCATTGCCCTTATCATAATT+GGG 0.467944 tig0020262:+35295 Msa1379070:intergenic
TCCAGGAAGAAACTGCACTA+TGG 0.468856 tig0020262:+35647 Msa1379070:intergenic
CAGTTTCTTCCTGGATTCCA+AGG 0.469739 tig0020262:-35639 Msa1379070:five_prime_UTR
AACATGTCAAAACATTCTTT+AGG 0.471328 tig0020262:+30429 Msa1379070:intergenic
CATTGGCCCAATAACCCATA+AGG 0.474768 tig0020262:+31633 Msa1379070:intergenic
TGTTGCCTCAAAATCAGATT+AGG 0.480131 tig0020262:+33186 Msa1379070:intergenic
CTCTGATATACCTTATAAGT+TGG 0.485810 tig0020262:-31361 Msa1379070:CDS
ATTGCTGGTGATTCGTACTC+TGG 0.488962 tig0020262:-32809 Msa1379070:CDS
TTTAGTGAAGTTCTCTTGAA+AGG 0.489083 tig0020262:-30007 Msa1379070:three_prime_UTR
GGCACGATGGGTTTAAATTG+AGG 0.491514 tig0020262:-30130 Msa1379070:three_prime_UTR
TCATAATTTCCTCTTTGGAA+TGG 0.491796 tig0020262:-35727 Msa1379070:five_prime_UTR
TCACTTTACACTTGAAACAT+TGG 0.502454 tig0020262:+30347 Msa1379070:intergenic
ATATAGGCAATGGACGAAAT+GGG 0.503931 tig0020262:+35039 Msa1379070:intergenic
AAGTTTCTTCCTGGATTCCA+AGG 0.506864 tig0020262:-34837 Msa1379070:CDS
CCTGGAGATTTATCCATGGT+TGG 0.509586 tig0020262:+32621 Msa1379070:intergenic
TTCTTTAGGGATACTTGTTG+GGG 0.509607 tig0020262:-32311 Msa1379070:intron
GTTGATAAGGTATGTGGGAG+TGG 0.510967 tig0020262:-35498 Msa1379070:intron
GTAGATTTGCCGGTTTCCAC+AGG 0.511485 tig0020262:-33065 Msa1379070:CDS
TGCTTTCAAGTTGCAACATG+TGG 0.513785 tig0020262:-34870 Msa1379070:CDS
ATGTTTGTTGATAAGGTATG+TGG 0.516782 tig0020262:-35504 Msa1379070:intron
AATTACGTTGTATAGTTCAT+CGG 0.521646 tig0020262:+32221 Msa1379070:intergenic
TCATGATTTCCTCTTTGGAA+AGG 0.523684 tig0020262:-34931 Msa1379070:CDS
CTATGGCTAACTGGTGGACC+TGG 0.525006 tig0020262:-34601 Msa1379070:CDS
AGCCACACCTCCTTGAATTG+TGG 0.526100 tig0020262:+35202 Msa1379070:intergenic
CCAACCATGGATAAATCTCC+AGG 0.530034 tig0020262:-32621 Msa1379070:intron
AGGCCAACAATATAGGCAAT+GGG 0.531916 tig0020262:+35842 Msa1379070:intergenic
AATAACATAAACAGAACAGC+AGG 0.535681 tig0020262:-30374 Msa1379070:three_prime_UTR
TGTCAAAACATTCTTTAGGC+CGG 0.539530 tig0020262:+30433 Msa1379070:intergenic
ATTACTCGACAGCTTAAAAG+TGG 0.540742 tig0020262:+31769 Msa1379070:intergenic
TTGATAAGGTATGTGGGAGT+GGG 0.544562 tig0020262:-35497 Msa1379070:intron
AAGGCCAACAATATAGGCAA+TGG 0.545152 tig0020262:+35841 Msa1379070:intergenic
GAATGCTGTAACAAATAGAA+AGG 0.545712 tig0020262:-32289 Msa1379070:CDS
TGAGTGACATAACAAATGAA+TGG 0.546362 tig0020262:-34967 Msa1379070:exon
TCATCAAGCCACTCACAACT+CGG 0.550092 tig0020262:+31865 Msa1379070:intergenic
CGGTTTCAAGCATAAAAGGA+AGG 0.551042 tig0020262:+35613 Msa1379070:intergenic
CATTCTTGGCAACACAAGCA+TGG 0.552672 tig0020262:-31150 Msa1379070:CDS
GGGTGGAGGACACACAGCTC+CGG 0.555292 tig0020262:-30460 Msa1379070:CDS
TGCAGGGAAGTGTTGCGAAA+TGG 0.557534 tig0020262:-31395 Msa1379070:intron
CCAGACAAAGCAGAGCAACC+AGG 0.565074 tig0020262:+34583 Msa1379070:intergenic
GCCTCAAAATCAGATTAGGC+AGG 0.565384 tig0020262:+33190 Msa1379070:intergenic
TCTTTGATGTGTTTACAAAG+TGG 0.566894 tig0020262:-29922 Msa1379070:three_prime_UTR
CTCATTCTATGGCTAACTGG+TGG 0.567871 tig0020262:-35407 Msa1379070:five_prime_UTR
ACTCAGCTCCCTTAGAGTGT+TGG 0.568988 tig0020262:+34985 Msa1379070:intergenic
CCAGTTAGCCATAGTATGAG+AGG 0.570952 tig0020262:+34610 Msa1379070:intergenic
TGGTTTCGTGTTGCTAAATG+TGG 0.572330 tig0020262:-35672 Msa1379070:five_prime_UTR
GAAAAGGAACCTTTCCAAAG+AGG 0.576659 tig0020262:+34922 Msa1379070:intergenic
CCAGTTAGCCATAGAATGAG+AGG 0.576803 tig0020262:+35410 Msa1379070:intergenic
TGTTTGTTGATAAGGTATGT+GGG 0.577215 tig0020262:-35503 Msa1379070:intron
ATGTGAAATCGTGGCACGAT+GGG 0.579225 tig0020262:-30142 Msa1379070:three_prime_UTR
AGGGACAATAATATAGGCAA+TGG 0.581150 tig0020262:+35029 Msa1379070:intergenic
GGTTTCAAGCATAAAAGGAA+GGG 0.584126 tig0020262:+35614 Msa1379070:intergenic
TATGTCTTCCAACACTCTAA+GGG 0.586125 tig0020262:-34993 Msa1379070:five_prime_UTR
GTCCCATTCCATGAGCAAAA+GGG 0.590161 tig0020262:+32250 Msa1379070:intergenic
TGCCACAATTCAAGGAGGTG+TGG 0.592195 tig0020262:-35204 Msa1379070:five_prime_UTR
TGTTGGAGTGGGTGAACAAG+AGG 0.593743 tig0020262:-34686 Msa1379070:CDS
CATCAAGCCACTCACAACTC+GGG 0.594908 tig0020262:+31866 Msa1379070:intergenic
TGTGAGCTTGTGCAATCTAA+CGG 0.596509 tig0020262:-35897 Msa1379070:five_prime_UTR
AGATATCAGTTCATTTGATG+AGG 0.597989 tig0020262:-32024 Msa1379070:intron
TTTAGCACCAGATTCTGTTG+TGG 0.599524 tig0020262:+33031 Msa1379070:intergenic
GAGGCAACATTCATGGACAA+AGG 0.601022 tig0020262:-33172 Msa1379070:intron
GGCAAGAACAGGAGAAATTG+TGG 0.602706 tig0020262:-30205 Msa1379070:three_prime_UTR
TTAATTAGGTATGTTGGAGT+GGG 0.605926 tig0020262:-34697 Msa1379070:intron
TTGACCTGGAGATTTATCCA+TGG 0.606484 tig0020262:+32617 Msa1379070:intergenic
GTTTCAAGCATAAAAGGAAG+GGG 0.608914 tig0020262:+35615 Msa1379070:intergenic
ATGATACTGAAAATTCTCCA+AGG 0.620699 tig0020262:-31846 Msa1379070:CDS
TATATAGTAGCTTACAACAA+AGG 0.624701 tig0020262:+35822 Msa1379070:intergenic
CTCATACTATGGCTAACTGG+TGG 0.626625 tig0020262:-34607 Msa1379070:CDS
CTGTCTCCAATCATCAACAA+TGG 0.629618 tig0020262:+31108 Msa1379070:intergenic
GAAAAGGAACCATTCCAAAG+AGG 0.631935 tig0020262:+35718 Msa1379070:intergenic
ATACAAATGACCAAGTTGCA+GGG 0.634663 tig0020262:-31081 Msa1379070:intron
TTTGTACTAATGTGAAATCG+TGG 0.635000 tig0020262:-30151 Msa1379070:three_prime_UTR
ATTTGTGCTGAGGAAATTGG+TGG 0.636527 tig0020262:+31801 Msa1379070:intergenic
GCAATTTGAGATTTGTGCTG+AGG 0.637624 tig0020262:+31791 Msa1379070:intergenic
ATCTGAGAACAATCCAAAGG+AGG 0.648164 tig0020262:-35435 Msa1379070:five_prime_UTR
TGAATCTGAGAACAATCCAA+AGG 0.648342 tig0020262:-35438 Msa1379070:five_prime_UTR
TGAATCAGAGAGGAATCCAA+AGG 0.653936 tig0020262:-34638 Msa1379070:CDS
AATGTGAAATCGTGGCACGA+TGG 0.657753 tig0020262:-30143 Msa1379070:three_prime_UTR
CAAAGCGCTACACATACAGA+AGG 0.660091 tig0020262:-31597 Msa1379070:intron
ACTACTTCATTGAATCAGAG+AGG 0.667054 tig0020262:-34648 Msa1379070:CDS
TTTGTGCTGAGGAAATTGGT+GGG 0.670722 tig0020262:+31802 Msa1379070:intergenic
TGTGCAAGTGTAGATACACA+AGG 0.671859 tig0020262:-30958 Msa1379070:intron
AGACATAGTAGCATACAACA+AGG 0.684379 tig0020262:+35009 Msa1379070:intergenic
GACATAGTAGCATACAACAA+GGG 0.685115 tig0020262:+35010 Msa1379070:intergenic
TTGTTGATGATTGGAGACAG+TGG 0.718131 tig0020262:-31105 Msa1379070:CDS
ATAACATAAACAGAACAGCA+GGG 0.721765 tig0020262:-30373 Msa1379070:three_prime_UTR
CTATTTGCCACAATTCAAGG+AGG 0.741038 tig0020262:-35209 Msa1379070:five_prime_UTR
TGTGGCATAAGTGAAGCCTG+TGG 0.746387 tig0020262:+33049 Msa1379060:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATTTTAAATATA+TGG - tig0020262:30293-30312 Msa1379070:three_prime_UTR 0.0%
!! AATAAAAAATGATTATCATA+AGG + tig0020262:30762-30781 Msa1379070:intergenic 10.0%
!!! TTTATTTTTAATCTATAGTA+TGG - tig0020262:31089-31108 Msa1379070:CDS 10.0%
!!! TTATTTTTAATCTATAGTAT+GGG - tig0020262:31090-31109 Msa1379070:CDS 10.0%
!! ATTGTTAATTGTTAATTTAT+TGG - tig0020262:32346-32365 Msa1379070:intron 10.0%
!! AATAAAATAAACATATGAAA+AGG + tig0020262:33847-33866 Msa1379070:intergenic 10.0%
!! AAAATATTTCAAGATATATA+TGG + tig0020262:34139-34158 Msa1379070:intergenic 10.0%
!! AAAAAATAAGTATAGAATTT+GGG + tig0020262:35201-35220 Msa1379070:intergenic 10.0%
!!! AAATTCTATACTTATTTTTT+GGG - tig0020262:35201-35220 Msa1379070:five_prime_UTR 10.0%
!! TAAAAAAAACTTAAAAACCA+TGG + tig0020262:30282-30301 Msa1379070:intergenic 15.0%
!! AAACGTGATAAAAAAAAAAT+TGG - tig0020262:30480-30499 Msa1379070:intron 15.0%
!! TTCATATTTCTTGATTAATT+AGG - tig0020262:31130-31149 Msa1379070:CDS 15.0%
!!! TATTGTTGTTAGTAAAAAAA+TGG - tig0020262:31359-31378 Msa1379070:CDS 15.0%
!!! ATGTTTTATTGACATATATA+AGG + tig0020262:32021-32040 Msa1379070:intergenic 15.0%
!!! ATAACATAATTTTCGTTATT+TGG + tig0020262:32954-32973 Msa1379070:intergenic 15.0%
!! TTATAAATAAATCTTTGTAG+TGG - tig0020262:32970-32989 Msa1379070:intron 15.0%
!! AGATTATATTACTTTCTTTA+GGG - tig0020262:33517-33536 Msa1379070:intron 15.0%
!! TTTATATATAATGACCATTA+TGG - tig0020262:34819-34838 Msa1379070:CDS 15.0%
!! AAACAAATATTAATTCAACT+TGG + tig0020262:34857-34876 Msa1379070:intergenic 15.0%
!!! TGTTAATTTTTAAGAAAAAC+CGG + tig0020262:34981-35000 Msa1379070:intergenic 15.0%
!! CAAAAAATAAGTATAGAATT+TGG + tig0020262:35202-35221 Msa1379070:intergenic 15.0%
!!! CAAATTCTATACTTATTTTT+TGG - tig0020262:35200-35219 Msa1379070:five_prime_UTR 15.0%
!!! AATTCTATACTTATTTTTTG+GGG - tig0020262:35202-35221 Msa1379070:five_prime_UTR 15.0%
!! AAAATTAATGATTGAAAGTT+CGG - tig0020262:35534-35553 Msa1379070:intron 15.0%
!!! TTTTCTTCATGACAAAAAAA+GGG - tig0020262:30056-30075 Msa1379070:three_prime_UTR 20.0%
!!! TTCTTTTACTATCACATATT+TGG - tig0020262:30149-30168 Msa1379070:three_prime_UTR 20.0%
!! TCATTCATTGCTAAATTATA+TGG + tig0020262:30461-30480 Msa1379070:intergenic 20.0%
!! AAAAAAATTGGTAGAATGAT+AGG - tig0020262:30492-30511 Msa1379070:intron 20.0%
!! TTATCCAAAAGTGAAAAATT+TGG + tig0020262:31320-31339 Msa1379070:intergenic 20.0%
!! TTGTTAGTAAAAAAATGGAT+AGG - tig0020262:31364-31383 Msa1379070:CDS 20.0%
!! TGTTAGTAAAAAAATGGATA+GGG - tig0020262:31365-31384 Msa1379070:CDS 20.0%
!! TTGCAAATGACTTATAATTT+AGG - tig0020262:31448-31467 Msa1379070:intron 20.0%
!! AAATGACTTATAATTTAGGA+TGG - tig0020262:31452-31471 Msa1379070:intron 20.0%
!! AAATTTATCTCAAAGATAAC+AGG - tig0020262:31868-31887 Msa1379070:CDS 20.0%
!! TATATGTCAATAAAACATGA+TGG - tig0020262:32023-32042 Msa1379070:intron 20.0%
!! TGAAAAATGATTTAATCATG+TGG + tig0020262:32142-32161 Msa1379070:intergenic 20.0%
!! TAGTTATAATTCTTCTTTGT+AGG - tig0020262:32489-32508 Msa1379070:intron 20.0%
!! AAGACATTCAAATTGAAATT+AGG - tig0020262:32513-32532 Msa1379070:intron 20.0%
!! TATTATATTTGTAGATTTGC+CGG - tig0020262:32766-32785 Msa1379070:intron 20.0%
!!! AACTTATCAATTTCTAAGAA+AGG - tig0020262:32859-32878 Msa1379070:intron 20.0%
!! CTAAAGAAAGTAATATAATC+TGG + tig0020262:33518-33537 Msa1379070:intergenic 20.0%
!! CAGATTATATTACTTTCTTT+AGG - tig0020262:33516-33535 Msa1379070:intron 20.0%
!! CACTGTATTACATAAATATA+TGG + tig0020262:34107-34126 Msa1379070:intergenic 20.0%
!! AGTTATACATATTTCCTTAT+GGG - tig0020262:34194-34213 Msa1379070:intron 20.0%
!!! GAATTTTTAATGGAAAATAG+AGG + tig0020262:34361-34380 Msa1379070:intergenic 20.0%
!!! TTTTATATTTACGATAACAG+TGG - tig0020262:34648-34667 Msa1379070:CDS 20.0%
!!! GTTAATTTTTAAGAAAAACC+GGG + tig0020262:34980-34999 Msa1379070:intergenic 20.0%
!!! AAAGCTAAGCAATTTATTTT+AGG - tig0020262:35144-35163 Msa1379070:five_prime_UTR 20.0%
!!! AATGATTGATCAAATTTTCA+GGG - tig0020262:35361-35380 Msa1379070:five_prime_UTR 20.0%
!!! AAAACCTGAATTTTATTCAT+TGG + tig0020262:35875-35894 Msa1379070:intergenic 20.0%
! TATATAGTAGCTTACAACAA+AGG + tig0020262:30022-30041 Msa1379070:intergenic 25.0%
!! CTTTTCTTCATGACAAAAAA+AGG - tig0020262:30055-30074 Msa1379070:three_prime_UTR 25.0%
! GATAGTAAAAGAAGAAGAAA+AGG + tig0020262:30142-30161 Msa1379070:intergenic 25.0%
!! CATATTCATGTTTGTTGATA+AGG - tig0020262:30330-30349 Msa1379070:three_prime_UTR 25.0%
! AAAAGAAGAAGAAGAAGAAA+AGG + tig0020262:30938-30957 Msa1379070:intergenic 25.0%
! TCTTGATTAATTAGGTATGT+TGG - tig0020262:31138-31157 Msa1379070:CDS 25.0%
! AATTACCAATTTCAAGCATA+AGG + tig0020262:31284-31303 Msa1379070:intergenic 25.0%
!! CTTTCCAAATTTTTCACTTT+TGG - tig0020262:31313-31332 Msa1379070:CDS 25.0%
! ATCCAAAATATTGAGTTTCT+GGG + tig0020262:31902-31921 Msa1379070:intergenic 25.0%
!!! AAACTCAATATTTTGGATGA+GGG - tig0020262:31904-31923 Msa1379070:CDS 25.0%
!! TAACGTGAAAAGCAATATTT+TGG - tig0020262:32237-32256 Msa1379070:CDS 25.0%
!! GTCAATTATGTTAGTTTCTA+GGG - tig0020262:32428-32447 Msa1379070:intron 25.0%
! AAATCTTCACCAACTATATA+GGG + tig0020262:32468-32487 Msa1379070:intergenic 25.0%
! TTAAAAAAGGAGGAATACAA+TGG - tig0020262:32625-32644 Msa1379070:CDS 25.0%
! TAAAAAAGGAGGAATACAAT+GGG - tig0020262:32626-32645 Msa1379070:CDS 25.0%
! AATACGAGTATCTAAATACA+TGG + tig0020262:32708-32727 Msa1379070:intergenic 25.0%
!!! TAAGATTTTTTTTTCTTGCC+AGG - tig0020262:32736-32755 Msa1379070:intron 25.0%
! AAATAAATCTTTGTAGTGGT+TGG - tig0020262:32974-32993 Msa1379070:intron 25.0%
! ACTTCATTTGATTGAAACTT+TGG + tig0020262:33008-33027 Msa1379070:intergenic 25.0%
! ATAATCAATCTTGAAGCTAT+TGG + tig0020262:33477-33496 Msa1379070:intergenic 25.0%
! AATTACGTTGTATAGTTCAT+CGG + tig0020262:33623-33642 Msa1379070:intergenic 25.0%
! GGAAATATGTATAACTCTAA+GGG + tig0020262:34190-34209 Msa1379070:intergenic 25.0%
! AGGAAATATGTATAACTCTA+AGG + tig0020262:34191-34210 Msa1379070:intergenic 25.0%
! GAGTTATACATATTTCCTTA+TGG - tig0020262:34193-34212 Msa1379070:intron 25.0%
!! ATATTTCCTTATGGGTTATT+GGG - tig0020262:34202-34221 Msa1379070:intron 25.0%
!! CAAATGTGGAGAATTTTTAA+TGG + tig0020262:34371-34390 Msa1379070:intergenic 25.0%
! GACCATTATGGAAATATAAA+TGG - tig0020262:34831-34850 Msa1379070:CDS 25.0%
! TTAGTTAGTATCCAAATTGT+AGG + tig0020262:35093-35112 Msa1379070:intergenic 25.0%
! ACCCCTAAAAAAAGAATTTA+GGG - tig0020262:35175-35194 Msa1379070:five_prime_UTR 25.0%
!! CAATGATTGATCAAATTTTC+AGG - tig0020262:35360-35379 Msa1379070:five_prime_UTR 25.0%
! AACATGTCAAAACATTCTTT+AGG + tig0020262:35415-35434 Msa1379070:intergenic 25.0%
!!! AATGTTTTGACATGTTTAGT+AGG - tig0020262:35419-35438 Msa1379070:five_prime_UTR 25.0%
!!! CAAGTTTTGTGCATTATATA+AGG - tig0020262:35745-35764 Msa1379070:five_prime_UTR 25.0%
! TACACCAATGAATAAAATTC+AGG - tig0020262:35868-35887 Msa1379070:five_prime_UTR 25.0%
!!! CAGGTTTTATTTTATCATAC+AGG - tig0020262:35887-35906 Msa1379070:five_prime_UTR 25.0%
GAGCTGACATAACAAATAAA+TGG - tig0020262:30078-30097 Msa1379070:three_prime_UTR 30.0%
AGCATTCATAATTTCCTCTT+TGG - tig0020262:30109-30128 Msa1379070:three_prime_UTR 30.0%
! TCATAATTTCCTCTTTGGAA+TGG - tig0020262:30114-30133 Msa1379070:three_prime_UTR 30.0%
! ATGTTTGTTGATAAGGTATG+TGG - tig0020262:30337-30356 Msa1379070:three_prime_UTR 30.0%
! TGTTTGTTGATAAGGTATGT+GGG - tig0020262:30338-30357 Msa1379070:three_prime_UTR 30.0%
ATCATAATTGGGTGAAGAAA+CGG + tig0020262:30538-30557 Msa1379070:intergenic 30.0%
TTCTTCACCCAATTATGATA+AGG - tig0020262:30539-30558 Msa1379070:intron 30.0%
TCTTCACCCAATTATGATAA+GGG - tig0020262:30540-30559 Msa1379070:intron 30.0%
ACAACAAGGGACAATAATAT+AGG + tig0020262:30821-30840 Msa1379070:intergenic 30.0%
TGAGTGACATAACAAATGAA+TGG - tig0020262:30874-30893 Msa1379070:intron 30.0%
AGATTTCATGATTTCCTCTT+TGG - tig0020262:30905-30924 Msa1379070:intron 30.0%
TCTATAGTAAAGTTTCTTCC+TGG - tig0020262:30995-31014 Msa1379070:intron 30.0%
!! GTTTTAAGTACAAAAGGAAG+GGG + tig0020262:31031-31050 Msa1379070:intergenic 30.0%
!!! GGTTTTAAGTACAAAAGGAA+GGG + tig0020262:31032-31051 Msa1379070:intergenic 30.0%
! CTTCCTTTTGTACTTAAAAC+CGG - tig0020262:31031-31050 Msa1379070:intron 30.0%
! TTCCTTTTGTACTTAAAACC+GGG - tig0020262:31032-31051 Msa1379070:intron 30.0%
ATTAATTAGGTATGTTGGAG+TGG - tig0020262:31143-31162 Msa1379070:CDS 30.0%
TTAATTAGGTATGTTGGAGT+GGG - tig0020262:31144-31163 Msa1379070:CDS 30.0%
! ACTTATAATTTAGGATGGAG+CGG - tig0020262:31457-31476 Msa1379070:intron 30.0%
ATAACAGTTTACTATTCTGC+AGG + tig0020262:31724-31743 Msa1379070:intergenic 30.0%
! AACCCAGAAACTCAATATTT+TGG - tig0020262:31897-31916 Msa1379070:CDS 30.0%
CATCCAAAATATTGAGTTTC+TGG + tig0020262:31903-31922 Msa1379070:intergenic 30.0%
!! GAAACTCAATATTTTGGATG+AGG - tig0020262:31903-31922 Msa1379070:CDS 30.0%
TATAAATGTATGCTATGTGC+AGG - tig0020262:31967-31986 Msa1379070:intron 30.0%
TCAGTTGAGAAATATATGCA+AGG - tig0020262:32159-32178 Msa1379070:intron 30.0%
AAAATAAGCTAACTGTGACT+TGG + tig0020262:32206-32225 Msa1379070:intergenic 30.0%
! CGTCAATTATGTTAGTTTCT+AGG - tig0020262:32427-32446 Msa1379070:intron 30.0%
ATTCTTAAGCCCTATATAGT+TGG - tig0020262:32456-32475 Msa1379070:intron 30.0%
GAAATCTTCACCAACTATAT+AGG + tig0020262:32469-32488 Msa1379070:intergenic 30.0%
! AATTGAAGCGTTAATGTTAC+AGG - tig0020262:32592-32611 Msa1379070:intron 30.0%
CAAATATAATACTACTCACC+TGG + tig0020262:32757-32776 Msa1379070:intergenic 30.0%
! AATTTTCGTTATTTGGCTGA+CGG + tig0020262:32947-32966 Msa1379070:intergenic 30.0%
TCAAATGAAGTTTACATTGC+TGG - tig0020262:33017-33036 Msa1379070:CDS 30.0%
!!! GCAATTTTTTGAACAATGAC+AGG + tig0020262:33068-33087 Msa1379070:intergenic 30.0%
ATTGTTCAAAAAATTGCACG+AGG - tig0020262:33071-33090 Msa1379070:CDS 30.0%
! TTTTCATTTCCTGCAAACAA+GGG + tig0020262:33194-33213 Msa1379070:intergenic 30.0%
! TTTTTCATTTCCTGCAAACA+AGG + tig0020262:33195-33214 Msa1379070:intergenic 30.0%
TTGTTTGCAGGAAATGAAAA+AGG - tig0020262:33194-33213 Msa1379070:CDS 30.0%
TGTTTGCAGGAAATGAAAAA+GGG - tig0020262:33195-33214 Msa1379070:CDS 30.0%
AATTTGCAGAACTAGTTGAA+AGG + tig0020262:33287-33306 Msa1379070:intergenic 30.0%
! TTTCTTTAGGGATACTTGTT+GGG - tig0020262:33529-33548 Msa1379070:intron 30.0%
GAATGCTGTAACAAATAGAA+AGG - tig0020262:33552-33571 Msa1379070:intron 30.0%
GTATAGCTATGTATGTATGT+AGG + tig0020262:33684-33703 Msa1379070:intergenic 30.0%
TCGCTGCAAAAAAATTGTAA+AGG - tig0020262:33752-33771 Msa1379070:intron 30.0%
AGATATCAGTTCATTTGATG+AGG - tig0020262:33817-33836 Msa1379070:intron 30.0%
CTGTGGAAAAAAGAAAAGAT+TGG + tig0020262:33920-33939 Msa1379070:intergenic 30.0%
! CAATCTTTTCTTTTTTCCAC+AGG - tig0020262:33918-33937 Msa1379070:intron 30.0%
ATGATACTGAAAATTCTCCA+AGG - tig0020262:33995-34014 Msa1379070:intron 30.0%
! TTTTTCATTAGAGATCTCCT+TGG + tig0020262:34015-34034 Msa1379070:intergenic 30.0%
! AATATGTATAACTCTAAGGG+TGG + tig0020262:34187-34206 Msa1379070:intergenic 30.0%
! CATATTTCCTTATGGGTTAT+TGG - tig0020262:34201-34220 Msa1379070:intron 30.0%
TTTGCGAACATTATCATCAT+TGG + tig0020262:34228-34247 Msa1379070:intergenic 30.0%
TATACTTTGATAGACAACAC+GGG + tig0020262:34309-34328 Msa1379070:intergenic 30.0%
GTATACTTTGATAGACAACA+CGG + tig0020262:34310-34329 Msa1379070:intergenic 30.0%
GCAGTTATAACATAAGAACT+TGG - tig0020262:34422-34441 Msa1379070:intron 30.0%
CTCTGATATACCTTATAAGT+TGG - tig0020262:34480-34499 Msa1379070:intron 30.0%
TTAGGGATATCCAACTTATA+AGG + tig0020262:34493-34512 Msa1379070:intergenic 30.0%
CATGATAATCATAGCTGTTA+GGG + tig0020262:34510-34529 Msa1379070:intergenic 30.0%
ACATGATAATCATAGCTGTT+AGG + tig0020262:34511-34530 Msa1379070:intergenic 30.0%
CATGTAAATCTCAGTAGAAA+AGG - tig0020262:34526-34545 Msa1379070:intron 30.0%
!! ACTATTCCATTGTTGATGAT+TGG - tig0020262:34727-34746 Msa1379070:intron 30.0%
GGCCATTTATATTTCCATAA+TGG + tig0020262:34836-34855 Msa1379070:intergenic 30.0%
ATATGAATTGTTCATTCACC+CGG - tig0020262:34959-34978 Msa1379070:exon 30.0%
CATTAAGCACTCTTTGATTA+TGG - tig0020262:34999-35018 Msa1379070:five_prime_UTR 30.0%
TGATTATGGTTCAACAAATG+TGG - tig0020262:35013-35032 Msa1379070:five_prime_UTR 30.0%
!!! TCTTTTTTTAGGGGTCTATT+AGG + tig0020262:35170-35189 Msa1379070:intergenic 30.0%
GACCCCTAAAAAAAGAATTT+AGG - tig0020262:35174-35193 Msa1379070:five_prime_UTR 30.0%
!!! GCCCTAAATTCTTTTTTTAG+GGG + tig0020262:35179-35198 Msa1379070:intergenic 30.0%
!!! GGCCCTAAATTCTTTTTTTA+GGG + tig0020262:35180-35199 Msa1379070:intergenic 30.0%
TTCATAAGCTATCTTAGCAA+GGG + tig0020262:35258-35277 Msa1379070:intergenic 30.0%
TTTCATAAGCTATCTTAGCA+AGG + tig0020262:35259-35278 Msa1379070:intergenic 30.0%
AATAACATAAACAGAACAGC+AGG - tig0020262:35467-35486 Msa1379070:five_prime_UTR 30.0%
ATAACATAAACAGAACAGCA+GGG - tig0020262:35468-35487 Msa1379070:five_prime_UTR 30.0%
TCACTTTACACTTGAAACAT+TGG + tig0020262:35497-35516 Msa1379070:intergenic 30.0%
! TTTCAAGTGTAAAGTGAAAC+TGG - tig0020262:35500-35519 Msa1379070:intron 30.0%
! TGCCATAATTTTTCCAAATC+GGG + tig0020262:35572-35591 Msa1379070:intergenic 30.0%
! GTGCCATAATTTTTCCAAAT+CGG + tig0020262:35573-35592 Msa1379070:intergenic 30.0%
! GAAAAATTATGGCACGATTT+TGG - tig0020262:35578-35597 Msa1379070:intron 30.0%
!!! ACGATTTTGGTTCAGTTTTT+TGG - tig0020262:35591-35610 Msa1379070:intron 30.0%
!!! CAGTTTTTTGGAGTTATTCT+CGG - tig0020262:35603-35622 Msa1379070:intron 30.0%
! GAAATTGTGGTAAGATTTTG+TGG - tig0020262:35649-35668 Msa1379070:five_prime_UTR 30.0%
TTTGTACTAATGTGAAATCG+TGG - tig0020262:35690-35709 Msa1379070:five_prime_UTR 30.0%
GAGAAACTTAGGTAACTTTA+AGG - tig0020262:35802-35821 Msa1379070:intron 30.0%
TTTAGTGAAGTTCTCTTGAA+AGG - tig0020262:35834-35853 Msa1379070:five_prime_UTR 30.0%
ACAACAAAGGCCAACAATAT+AGG + tig0020262:30009-30028 Msa1379070:intergenic 35.0%
GTTTCAAGCATAAAAGGAAG+GGG + tig0020262:30229-30248 Msa1379070:intergenic 35.0%
GGTTTCAAGCATAAAAGGAA+GGG + tig0020262:30230-30249 Msa1379070:intergenic 35.0%
! CTTCCTTTTATGCTTGAAAC+CGG - tig0020262:30229-30248 Msa1379070:three_prime_UTR 35.0%
! TTCCTTTTATGCTTGAAACC+GGG - tig0020262:30230-30249 Msa1379070:three_prime_UTR 35.0%
AGCTAAGTGTATAACTAACC+CGG + tig0020262:30251-30270 Msa1379070:intergenic 35.0%
TGAATCTGAGAACAATCCAA+AGG - tig0020262:30403-30422 Msa1379070:CDS 35.0%
GCATTGCCCTTATCATAATT+GGG + tig0020262:30549-30568 Msa1379070:intergenic 35.0%
AGCATTGCCCTTATCATAAT+TGG + tig0020262:30550-30569 Msa1379070:intergenic 35.0%
ATATAGGCAATGGACGAAAT+GGG + tig0020262:30805-30824 Msa1379070:intergenic 35.0%
AATATAGGCAATGGACGAAA+TGG + tig0020262:30806-30825 Msa1379070:intergenic 35.0%
AGGGACAATAATATAGGCAA+TGG + tig0020262:30815-30834 Msa1379070:intergenic 35.0%
GACATAGTAGCATACAACAA+GGG + tig0020262:30834-30853 Msa1379070:intergenic 35.0%
AGACATAGTAGCATACAACA+AGG + tig0020262:30835-30854 Msa1379070:intergenic 35.0%
TATGTCTTCCAACACTCTAA+GGG - tig0020262:30848-30867 Msa1379070:intron 35.0%
! TCATGATTTCCTCTTTGGAA+AGG - tig0020262:30910-30929 Msa1379070:intron 35.0%
!!! CGGTTTTAAGTACAAAAGGA+AGG + tig0020262:31033-31052 Msa1379070:intergenic 35.0%
ACTACTTCATTGAATCAGAG+AGG - tig0020262:31193-31212 Msa1379070:intron 35.0%
! CTTATAATTTAGGATGGAGC+GGG - tig0020262:31458-31477 Msa1379070:intron 35.0%
!! AAATTGCGTTGATTTGAAGC+TGG - tig0020262:31657-31676 Msa1379070:intron 35.0%
AACAAACACGAAACCATGAA+CGG - tig0020262:31692-31711 Msa1379070:intron 35.0%
GTAAACTGTTATCTAACCTG+AGG - tig0020262:31732-31751 Msa1379070:intron 35.0%
TCCCCGTTATGAATCATAAT+CGG - tig0020262:31828-31847 Msa1379070:CDS 35.0%
TCCGATTATGATTCATAACG+GGG + tig0020262:31832-31851 Msa1379070:intergenic 35.0%
CTCCGATTATGATTCATAAC+GGG + tig0020262:31833-31852 Msa1379070:intergenic 35.0%
CCTCCGATTATGATTCATAA+CGG + tig0020262:31834-31853 Msa1379070:intergenic 35.0%
GTTTATTAACCACCCGTTAA+TGG - tig0020262:32069-32088 Msa1379070:CDS 35.0%
! CTTTGACTTTGTCCATTAAC+GGG + tig0020262:32084-32103 Msa1379070:intergenic 35.0%
! CCTTTGACTTTGTCCATTAA+CGG + tig0020262:32085-32104 Msa1379070:intergenic 35.0%
!!! TAATCATGTGGCTAGTTTTG+TGG + tig0020262:32130-32149 Msa1379070:intergenic 35.0%
!! AGCAATATTTTGGAGAGACT+TGG - tig0020262:32247-32266 Msa1379070:CDS 35.0%
AGGTCCTCTTGAGTTAAAAA+AGG - tig0020262:32612-32631 Msa1379070:intron 35.0%
TCCTCTTGAGTTAAAAAAGG+AGG - tig0020262:32615-32634 Msa1379070:intron 35.0%
!!! TCCTCCTTTTTTAACTCAAG+AGG + tig0020262:32619-32638 Msa1379070:intergenic 35.0%
TGTTGCCTCAAAATCAGATT+AGG + tig0020262:32658-32677 Msa1379070:intergenic 35.0%
!!! TGATTTTGAGGCAACATTCA+TGG - tig0020262:32662-32681 Msa1379070:intron 35.0%
! TTTTGAACAATGACAGGAAC+AGG + tig0020262:33062-33081 Msa1379070:intergenic 35.0%
GTTTGCAGGAAATGAAAAAG+GGG - tig0020262:33196-33215 Msa1379070:CDS 35.0%
!! GATACTTTAAGATGTTGACC+TGG + tig0020262:33241-33260 Msa1379070:intergenic 35.0%
AAGTATCACTCTCTCATGTT+AGG - tig0020262:33254-33273 Msa1379070:intron 35.0%
GTCGATGCTTTATAGTCTAT+AGG + tig0020262:33374-33393 Msa1379070:intergenic 35.0%
! CTTTCTTTAGGGATACTTGT+TGG - tig0020262:33528-33547 Msa1379070:intron 35.0%
! TTCTTTAGGGATACTTGTTG+GGG - tig0020262:33530-33549 Msa1379070:intron 35.0%
! TATGTTATCCCTTTTGCTCA+TGG - tig0020262:33583-33602 Msa1379070:intron 35.0%
ACAAAGTAGCAGATATCAGT+TGG + tig0020262:33730-33749 Msa1379070:intergenic 35.0%
ATTACTCGACAGCTTAAAAG+TGG + tig0020262:34075-34094 Msa1379070:intergenic 35.0%
ATACTTTGATAGACAACACG+GGG + tig0020262:34308-34327 Msa1379070:intergenic 35.0%
TAACATAAGAACTTGGTTGC+AGG - tig0020262:34429-34448 Msa1379070:intron 35.0%
AACATAAGAACTTGGTTGCA+GGG - tig0020262:34430-34449 Msa1379070:intron 35.0%
GCATTCGTTCACTAATTTAC+AGG - tig0020262:34548-34567 Msa1379070:intron 35.0%
TGACATGATAGTTCCATTCT+TGG - tig0020262:34677-34696 Msa1379070:CDS 35.0%
ATACAAATGACCAAGTTGCA+GGG - tig0020262:34760-34779 Msa1379070:intron 35.0%
! ATTTTGAATACCCTGCAACT+TGG + tig0020262:34773-34792 Msa1379070:intergenic 35.0%
!! TGGTTCATTCTCTAAGATAC+AGG - tig0020262:35033-35052 Msa1379070:five_prime_UTR 35.0%
!! GGTTCATTCTCTAAGATACA+GGG - tig0020262:35034-35053 Msa1379070:five_prime_UTR 35.0%
!!! GGGCCCTAAATTCTTTTTTT+AGG + tig0020262:35181-35200 Msa1379070:intergenic 35.0%
!!! ATACTTATTTTTTGGGGCCT+AGG - tig0020262:35208-35227 Msa1379070:five_prime_UTR 35.0%
!!! TACTTATTTTTTGGGGCCTA+GGG - tig0020262:35209-35228 Msa1379070:five_prime_UTR 35.0%
!! GATTGATCAAATTTTCAGGG+TGG - tig0020262:35364-35383 Msa1379070:five_prime_UTR 35.0%
TGTCAAAACATTCTTTAGGC+CGG + tig0020262:35411-35430 Msa1379070:intergenic 35.0%
!! GTTTTGACATGTTTAGTAGG+TGG - tig0020262:35422-35441 Msa1379070:five_prime_UTR 35.0%
!! GTCCCGATTTGGAAAAATTA+TGG - tig0020262:35567-35586 Msa1379070:intron 35.0%
GTTATTCTCGGCAAAAATTG+TGG - tig0020262:35615-35634 Msa1379070:five_prime_UTR 35.0%
TGTGAGCTTGTGCAATCTAA+CGG - tig0020262:29944-29963 Msa1379070:three_prime_UTR 40.0%
AGGCCAACAATATAGGCAAT+GGG + tig0020262:30002-30021 Msa1379070:intergenic 40.0%
AAGGCCAACAATATAGGCAA+TGG + tig0020262:30003-30022 Msa1379070:intergenic 40.0%
GAAAAGGAACCATTCCAAAG+AGG + tig0020262:30126-30145 Msa1379070:intergenic 40.0%
! TGGTTTCGTGTTGCTAAATG+TGG - tig0020262:30169-30188 Msa1379070:three_prime_UTR 40.0%
CGGTTTCAAGCATAAAAGGA+AGG + tig0020262:30231-30250 Msa1379070:intergenic 40.0%
AACCCGGTTTCAAGCATAAA+AGG + tig0020262:30235-30254 Msa1379070:intergenic 40.0%
!! CACTTAGCTCTATAGTTCCA+TGG - tig0020262:30262-30281 Msa1379070:three_prime_UTR 40.0%
TTGATAAGGTATGTGGGAGT+GGG - tig0020262:30344-30363 Msa1379070:three_prime_UTR 40.0%
ATCTGAGAACAATCCAAAGG+AGG - tig0020262:30406-30425 Msa1379070:CDS 40.0%
GGCAAATAGTGCATTGTGAT+TGG + tig0020262:30621-30640 Msa1379070:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - tig0020262:30629-30648 Msa1379070:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - tig0020262:30632-30651 Msa1379070:intron 40.0%
CTATGTCTTCCAACACTCTA+AGG - tig0020262:30847-30866 Msa1379070:intron 40.0%
GAAAAGGAACCTTTCCAAAG+AGG + tig0020262:30922-30941 Msa1379070:intergenic 40.0%
!! TGCTTTCAAGTTGCAACATG+TGG - tig0020262:30971-30990 Msa1379070:intron 40.0%
AAGTTTCTTCCTGGATTCCA+AGG - tig0020262:31004-31023 Msa1379070:intron 40.0%
!!! GACCCGGTTTTAAGTACAAA+AGG + tig0020262:31037-31056 Msa1379070:intergenic 40.0%
AGAGCTAAGTAAAACTGACC+CGG + tig0020262:31053-31072 Msa1379070:intergenic 40.0%
TGAATCAGAGAGGAATCCAA+AGG - tig0020262:31203-31222 Msa1379070:intron 40.0%
AGTATGAGAGGATCATCCTT+TGG + tig0020262:31222-31241 Msa1379070:intergenic 40.0%
AGGATGATCCTCTCATACTA+TGG - tig0020262:31223-31242 Msa1379070:intron 40.0%
!! TCTGGCCTTATGCTTGAAAT+TGG - tig0020262:31276-31295 Msa1379070:intron 40.0%
AAGAACTGTTGTATCCTAGG+AGG + tig0020262:31809-31828 Msa1379070:intergenic 40.0%
CCGTTATGAATCATAATCGG+AGG - tig0020262:31831-31850 Msa1379070:CDS 40.0%
! CCGTTAATGGACAAAGTCAA+AGG - tig0020262:32082-32101 Msa1379070:CDS 40.0%
!!! GGCTAGTTTTGTGGAATATG+TGG + tig0020262:32121-32140 Msa1379070:intergenic 40.0%
CAACATTCATGGACAAAGGT+GGG - tig0020262:32673-32692 Msa1379070:intron 40.0%
AACATTCATGGACAAAGGTG+GGG - tig0020262:32674-32693 Msa1379070:intron 40.0%
ACTTATGCCACAACAGAATC+TGG - tig0020262:32803-32822 Msa1379070:CDS 40.0%
TTTAGCACCAGATTCTGTTG+TGG + tig0020262:32813-32832 Msa1379070:intergenic 40.0%
! TCACAATTTCCCTTGTTTGC+AGG - tig0020262:33182-33201 Msa1379070:CDS 40.0%
TTGACCTGGAGATTTATCCA+TGG + tig0020262:33227-33246 Msa1379070:intergenic 40.0%
! TATCCCTTTTGCTCATGGAA+TGG - tig0020262:33588-33607 Msa1379070:intron 40.0%
! ATCCCTTTTGCTCATGGAAT+GGG - tig0020262:33589-33608 Msa1379070:intron 40.0%
! GATATCAGTTGGTGCTTCAT+AGG + tig0020262:33719-33738 Msa1379070:intergenic 40.0%
!!! TTTTTTCCACAGGTCACATC+AGG - tig0020262:33928-33947 Msa1379070:intron 40.0%
TTAATTCCTGATGTGACCTG+TGG + tig0020262:33937-33956 Msa1379070:intergenic 40.0%
TTTGTGCTGAGGAAATTGGT+GGG + tig0020262:34042-34061 Msa1379070:intergenic 40.0%
ATTTGTGCTGAGGAAATTGG+TGG + tig0020262:34043-34062 Msa1379070:intergenic 40.0%
GAGATTTGTGCTGAGGAAAT+TGG + tig0020262:34046-34065 Msa1379070:intergenic 40.0%
! GCAATTTGAGATTTGTGCTG+AGG + tig0020262:34053-34072 Msa1379070:intergenic 40.0%
! GTATAACTCTAAGGGTGGAA+AGG + tig0020262:34182-34201 Msa1379070:intergenic 40.0%
CTTGCAATCTCGTACAAATG+TGG + tig0020262:34385-34404 Msa1379070:intergenic 40.0%
CACATTTGTACGAGATTGCA+AGG - tig0020262:34383-34402 Msa1379070:intron 40.0%
CTGTCTCCAATCATCAACAA+TGG + tig0020262:34736-34755 Msa1379070:intergenic 40.0%
!! TTGTTGATGATTGGAGACAG+TGG - tig0020262:34736-34755 Msa1379070:intron 40.0%
CATACAAATGACCAAGTTGC+AGG - tig0020262:34759-34778 Msa1379070:intron 40.0%
TGTGCAAGTGTAGATACACA+AGG - tig0020262:34883-34902 Msa1379070:CDS 40.0%
AAATTGTAGGTTCGCCCTTA+GGG + tig0020262:35080-35099 Msa1379070:intergenic 40.0%
CTATCTTAGCAAGGGAAGTA+GGG + tig0020262:35250-35269 Msa1379070:intergenic 40.0%
!! TGATCAAATTTTCAGGGTGG+AGG - tig0020262:35367-35386 Msa1379070:five_prime_UTR 40.0%
GCAAAAATTGTGTCCCGATT+TGG - tig0020262:35556-35575 Msa1379070:intron 40.0%
GCAAAAATTGTGGCAAGAAC+AGG - tig0020262:35625-35644 Msa1379070:five_prime_UTR 40.0%
! AGGCTTCATTCTCTACGTTT+TGG - tig0020262:35765-35784 Msa1379070:five_prime_UTR 40.0%
! GGCTTCATTCTCTACGTTTT+GGG - tig0020262:35766-35785 Msa1379070:five_prime_UTR 40.0%
GCTTCAAGAGAGAGAAACTT+AGG - tig0020262:35791-35810 Msa1379070:intron 40.0%
GTTCTCTTGAAAGGTTCTCT+TGG - tig0020262:35843-35862 Msa1379070:five_prime_UTR 40.0%
TCGCCCATTGCCTATATTGT+TGG - tig0020262:29996-30015 Msa1379070:three_prime_UTR 45.0%
TCCATAGTGCAGTTTCTTCC+TGG - tig0020262:30193-30212 Msa1379070:three_prime_UTR 45.0%
TCCAGGAAGAAACTGCACTA+TGG + tig0020262:30197-30216 Msa1379070:intergenic 45.0%
CAGTTTCTTCCTGGATTCCA+AGG - tig0020262:30202-30221 Msa1379070:three_prime_UTR 45.0%
! GTTGATAAGGTATGTGGGAG+TGG - tig0020262:30343-30362 Msa1379070:three_prime_UTR 45.0%
AGAATGAGAGGATCCTCCTT+TGG + tig0020262:30422-30441 Msa1379070:intergenic 45.0%
AGGAGGATCCTCTCATTCTA+TGG - tig0020262:30423-30442 Msa1379070:CDS 45.0%
CCAGTTAGCCATAGAATGAG+AGG + tig0020262:30434-30453 Msa1379070:intergenic 45.0%
CCTCTCATTCTATGGCTAAC+TGG - tig0020262:30431-30450 Msa1379070:CDS 45.0%
CTCATTCTATGGCTAACTGG+TGG - tig0020262:30434-30453 Msa1379070:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - tig0020262:30649-30668 Msa1379070:intron 45.0%
CCAGTTAGCCATAGTATGAG+AGG + tig0020262:31234-31253 Msa1379070:intergenic 45.0%
CCTCTCATACTATGGCTAAC+TGG - tig0020262:31231-31250 Msa1379070:intron 45.0%
CTCATACTATGGCTAACTGG+TGG - tig0020262:31234-31253 Msa1379070:intron 45.0%
TGACATAGTCACTGTCCTTG+AGG - tig0020262:31757-31776 Msa1379070:intron 45.0%
TGAGGCGGATAAAATCCTCA+AGG + tig0020262:31775-31794 Msa1379070:intergenic 45.0%
TAGGAGGATATGCGCTTATG+AGG + tig0020262:31793-31812 Msa1379070:intergenic 45.0%
TCATAAGCGCATATCCTCCT+AGG - tig0020262:31792-31811 Msa1379070:CDS 45.0%
GGGAAGAACTGTTGTATCCT+AGG + tig0020262:31812-31831 Msa1379070:intergenic 45.0%
TGACTTTGTCCATTAACGGG+TGG + tig0020262:32081-32100 Msa1379070:intergenic 45.0%
! GCCTGCCTAATCTGATTTTG+AGG - tig0020262:32650-32669 Msa1379070:intron 45.0%
GCCTCAAAATCAGATTAGGC+AGG + tig0020262:32654-32673 Msa1379070:intergenic 45.0%
GAGGCAACATTCATGGACAA+AGG - tig0020262:32669-32688 Msa1379070:intron 45.0%
GCAACATTCATGGACAAAGG+TGG - tig0020262:32672-32691 Msa1379070:intron 45.0%
ACATTCATGGACAAAGGTGG+GGG - tig0020262:32675-32694 Msa1379070:intron 45.0%
TAAGTGAAGCCTGTGGAAAC+CGG + tig0020262:32788-32807 Msa1379070:intergenic 45.0%
ATTGCTGGTGATTCGTACTC+TGG - tig0020262:33032-33051 Msa1379070:CDS 45.0%
ATGAAAAAGGGGTCCAACCA+TGG - tig0020262:33207-33226 Msa1379070:CDS 45.0%
CCTGGAGATTTATCCATGGT+TGG + tig0020262:33223-33242 Msa1379070:intergenic 45.0%
CCAACCATGGATAAATCTCC+AGG - tig0020262:33220-33239 Msa1379070:CDS 45.0%
GTCCCATTCCATGAGCAAAA+GGG + tig0020262:33594-33613 Msa1379070:intergenic 45.0%
AGTCCCATTCCATGAGCAAA+AGG + tig0020262:33595-33614 Msa1379070:intergenic 45.0%
! TTTTAGACCCGAGTTGTGAG+TGG - tig0020262:33968-33987 Msa1379070:intron 45.0%
TCATCAAGCCACTCACAACT+CGG + tig0020262:33979-33998 Msa1379070:intergenic 45.0%
CATTGGCCCAATAACCCATA+AGG + tig0020262:34211-34230 Msa1379070:intergenic 45.0%
! CAAAGCGCTACACATACAGA+AGG - tig0020262:34244-34263 Msa1379070:intron 45.0%
CATGCTTGTGTTGCCAAGAA+TGG + tig0020262:34693-34712 Msa1379070:intergenic 45.0%
CATTCTTGGCAACACAAGCA+TGG - tig0020262:34691-34710 Msa1379070:CDS 45.0%
GGGCTCCAAAATCTCAGAAA+CGG + tig0020262:35060-35079 Msa1379070:intergenic 45.0%
!!! TCTGAGATTTTGGAGCCCTA+AGG - tig0020262:35062-35081 Msa1379070:five_prime_UTR 45.0%
!!! CTGAGATTTTGGAGCCCTAA+GGG - tig0020262:35063-35082 Msa1379070:five_prime_UTR 45.0%
CAAATTGTAGGTTCGCCCTT+AGG + tig0020262:35081-35100 Msa1379070:intergenic 45.0%
CTAAGGGCGAACCTACAATT+TGG - tig0020262:35079-35098 Msa1379070:five_prime_UTR 45.0%
GCTATCTTAGCAAGGGAAGT+AGG + tig0020262:35251-35270 Msa1379070:intergenic 45.0%
CATTCTTTAGGCCGGTATTC+CGG + tig0020262:35403-35422 Msa1379070:intergenic 45.0%
GGCAAGAACAGGAGAAATTG+TGG - tig0020262:35636-35655 Msa1379070:five_prime_UTR 45.0%
AATGTGAAATCGTGGCACGA+TGG - tig0020262:35698-35717 Msa1379070:five_prime_UTR 45.0%
ATGTGAAATCGTGGCACGAT+GGG - tig0020262:35699-35718 Msa1379070:five_prime_UTR 45.0%
! GGCACGATGGGTTTAAATTG+AGG - tig0020262:35711-35730 Msa1379070:five_prime_UTR 45.0%
!! ATAAATTAATATTAACATAA+CGG + tig0020262:33129-33148 Msa1379070:intergenic 5.0%
GCATAAAAGGAAGGGGTCCT+TGG + tig0020262:30222-30241 Msa1379070:intergenic 50.0%
TGCCACAATTCAAGGAGGTG+TGG - tig0020262:30637-30656 Msa1379070:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG + tig0020262:30642-30661 Msa1379070:intergenic 50.0%
ACTCAGCTCCCTTAGAGTGT+TGG + tig0020262:30859-30878 Msa1379070:intergenic 50.0%
GTACAAAAGGAAGGGGTCCT+TGG + tig0020262:31024-31043 Msa1379070:intergenic 50.0%
TGTTGGAGTGGGTGAACAAG+AGG - tig0020262:31155-31174 Msa1379070:CDS 50.0%
CTGCAGGTTATTGCCGTTCA+TGG + tig0020262:31708-31727 Msa1379070:intergenic 50.0%
GAGGATATGCGCTTATGAGG+CGG + tig0020262:31790-31809 Msa1379070:intergenic 50.0%
!! GTAGATTTGCCGGTTTCCAC+AGG - tig0020262:32776-32795 Msa1379070:CDS 50.0%
TGTGGCATAAGTGAAGCCTG+TGG + tig0020262:32795-32814 Msa1379070:intergenic 50.0%
CATCAAGCCACTCACAACTC+GGG + tig0020262:33978-33997 Msa1379070:intergenic 50.0%
!! TGCAGGGAAGTGTTGCGAAA+TGG - tig0020262:34446-34465 Msa1379070:intron 50.0%
!!! CAGGGCCGTTTCTGAGATTT+TGG - tig0020262:35052-35071 Msa1379070:five_prime_UTR 50.0%
TGTGGGAGTGGGAGAGAAAG+AGG - tig0020262:30355-30374 Msa1379070:three_prime_UTR 55.0%
! CTATGGCTAACTGGTGGACC+TGG - tig0020262:30440-30459 Msa1379070:CDS 55.0%
CCAGACAAAGCAGAGCAACC+AGG + tig0020262:31261-31280 Msa1379070:intergenic 55.0%
CCTGGTTGCTCTGCTTTGTC+TGG - tig0020262:31258-31277 Msa1379070:intron 55.0%
CAGTGACTATGTCACGCCTC+AGG + tig0020262:31751-31770 Msa1379070:intergenic 55.0%
CAAGGGAAGTAGGGCGAAGA+GGG + tig0020262:35241-35260 Msa1379070:intergenic 55.0%
GACACACAGCTCCGGAATAC+CGG - tig0020262:35389-35408 Msa1379070:five_prime_UTR 55.0%
GGAAGGGGTCCTTGGAATCC+AGG + tig0020262:30214-30233 Msa1379070:intergenic 60.0%
GGAAGGGGTCCTTGGAATCC+AGG + tig0020262:30214-30233 Msa1379070:intergenic 60.0%
GCAAGGGAAGTAGGGCGAAG+AGG + tig0020262:35242-35261 Msa1379070:intergenic 60.0%
GGGTGGAGGACACACAGCTC+CGG - tig0020262:35381-35400 Msa1379070:five_prime_UTR 65.0%
GCGAAGAGGGCGACTGCCCT+AGG + tig0020262:35228-35247 Msa1379070:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020262 gene 29922 35941 29922 ID=Msa1379070;Name=Msa1379070
tig0020262 mRNA 29922 35941 29922 ID=Msa1379070-mRNA-1;Parent=Msa1379070;Name=Msa1379070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=851|1|1|1|0.86|0.81|16|476|472
tig0020262 exon 29922 30481 29922 ID=Msa1379070-mRNA-1:exon:6364;Parent=Msa1379070-mRNA-1
tig0020262 exon 30922 30967 30922 ID=Msa1379070-mRNA-1:exon:6363;Parent=Msa1379070-mRNA-1
tig0020262 exon 31082 31195 31082 ID=Msa1379070-mRNA-1:exon:6362;Parent=Msa1379070-mRNA-1
tig0020262 exon 31294 31412 31294 ID=Msa1379070-mRNA-1:exon:6361;Parent=Msa1379070-mRNA-1
tig0020262 exon 31598 31669 31598 ID=Msa1379070-mRNA-1:exon:6360;Parent=Msa1379070-mRNA-1
tig0020262 exon 31774 31923 31774 ID=Msa1379070-mRNA-1:exon:6359;Parent=Msa1379070-mRNA-1
tig0020262 exon 32025 32111 32025 ID=Msa1379070-mRNA-1:exon:6358;Parent=Msa1379070-mRNA-1
tig0020262 exon 32227 32325 32227 ID=Msa1379070-mRNA-1:exon:6357;Parent=Msa1379070-mRNA-1
tig0020262 exon 32622 32659 32622 ID=Msa1379070-mRNA-1:exon:6356;Parent=Msa1379070-mRNA-1
tig0020262 exon 32771 32873 32771 ID=Msa1379070-mRNA-1:exon:6355;Parent=Msa1379070-mRNA-1
tig0020262 exon 32983 33105 32983 ID=Msa1379070-mRNA-1:exon:6354;Parent=Msa1379070-mRNA-1
tig0020262 exon 33173 33249 33173 ID=Msa1379070-mRNA-1:exon:6353;Parent=Msa1379070-mRNA-1
tig0020262 exon 34566 34711 34566 ID=Msa1379070-mRNA-1:exon:6352;Parent=Msa1379070-mRNA-1
tig0020262 exon 34810 35511 34810 ID=Msa1379070-mRNA-1:exon:6351;Parent=Msa1379070-mRNA-1
tig0020262 exon 35612 35797 35612 ID=Msa1379070-mRNA-1:exon:6350;Parent=Msa1379070-mRNA-1
tig0020262 exon 35818 35941 35818 ID=Msa1379070-mRNA-1:exon:6349;Parent=Msa1379070-mRNA-1
tig0020262 five_prime_UTR 35818 35941 35818 ID=Msa1379070-mRNA-1:five_prime_utr;Parent=Msa1379070-mRNA-1
tig0020262 five_prime_UTR 35612 35797 35612 ID=Msa1379070-mRNA-1:five_prime_utr;Parent=Msa1379070-mRNA-1
tig0020262 five_prime_UTR 34971 35511 34971 ID=Msa1379070-mRNA-1:five_prime_utr;Parent=Msa1379070-mRNA-1
tig0020262 CDS 34810 34970 34810 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 34566 34711 34566 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 33173 33249 33173 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 32983 33105 32983 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 32771 32873 32771 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 32622 32659 32622 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 32227 32325 32227 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 32025 32111 32025 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 31774 31923 31774 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 31598 31669 31598 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 31294 31412 31294 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 31082 31195 31082 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 30922 30967 30922 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 CDS 30398 30481 30398 ID=Msa1379070-mRNA-1:cds;Parent=Msa1379070-mRNA-1
tig0020262 three_prime_UTR 29922 30397 29922 ID=Msa1379070-mRNA-1:three_prime_utr;Parent=Msa1379070-mRNA-1
Gene Sequence

>Msa1379070

ATGGCAAAGTTTAGATTTCATGATTTCCTCTTTGGAAAGGTTCCTTTTCTTCTTCTTCTTCTTTTATTATCACATATTTGCTTTCAAGTTGCAACATGTGGCTCTATAGTAAAGTTTCTTCCTGGATTCCAAGGACCCCTTCCTTTTGTACTTAAAACCGGGTATGTTGGAGTGGGTGAACAAGAGGATGTGCAAGTGTTCTACTACTTCATTGAATCAGAGAGGAATCCAAAGGATGATCCTCTCATACTATGGCTAACTGGTGGACCTGGTTGCTCTGCTTTGTCTGGCCTTATGCTTGAAATTGGTCCTCTTGAGTTAAAAAAGGAGGAATACAATGGGAGCCTGCCTAATCTGATTTTGAGGCAACATTCATGGACAAAGGTGAGTAGTATTATATTTGTAGATTTGCCGGTTTCCACAGGCTTCACTTATGCCACAACAGAATCTGGTGCTAAACGAAGCGACTCGATACTAGTTCATCAAACTTATCAATTTCTAAGAAAGTGGTTGGTTCATCATCCAAAGTTTCAATCAAATGAAGTTTACATTGCTGGTGATTCGTACTCTGGCATTCCTGTTCCTGTCATTGTTCAAAAAATTGCACGAGGAAATGAAAAAGGGGTCCAACCATGGATAAATCTCCAGGGATACTTGTTGGGGAATGCTGTAACAAATAGAAAGGAACAAAACTATGTTATCCCTTTTGCTCATGGAATGGGACTCATATCCGATGAACTATACAACTCGCTGCAAAAAAATTGTAAAGGAGACTACACAAATGTAGAGACAAGAAATGTTTTATGTTCTAGAGATATCAGTTCATTTGATGAGGTCACATCAGGAATTAATAAAGCATATATTTTAGACCCGAGTTGTGAGTGGCTTGATGATACTGAAAATTCTCCAAGGAGATCTCTAATGAAAAAATATCCCACCAATTTCCTCAGCACAAATCTCAAATTGCCACTTTTAAGCTGTCGAAGTTATACATATTTCCTTATGGGTTATTGGGCCAATGATGATAATGTTCGCAAAGCGCTACACATACAGAAGGGAAGTGTTGCGAAATGGCATCGTTGTAGCTCTGATATACCTTATAAGTTGGATATCCCTAACAGCTATGATTATCATGTAAATCTCAGTAGAAAAGGCATTCGTTCACTAATTTACAGTGGCGATCATGACATGATAGTTCCATTCTTGGCAACACAAGCATGGATAAGATCTTTAAACTATTCCATTGTTGATGATTGGAGACAGTGGCATACAAATGACCAAGTTGCAGGATACACAAGGACTTACTCAAATCAGATGACTTTTGCAACTGTGAAGGGTGGAGGACACACAGCTCCGGAATACCGGCCTAAAGAATGTTTTGACATGTTTAGTAGGTGGTTATCTAAGAAAGCTTTGTAA
Protein sequence

>Msa1379070

MAKFRFHDFLFGKVPFLLLLLLLSHICFQVATCGSIVKFLPGFQGPLPFVLKTGYVGVGEQEDVQVFYYFIESERNPKDDPLILWLTGGPGCSALSGLMLEIGPLELKKEEYNGSLPNLILRQHSWTKVSSIIFVDLPVSTGFTYATTESGAKRSDSILVHQTYQFLRKWLVHHPKFQSNEVYIAGDSYSGIPVPVIVQKIARGNEKGVQPWINLQGYLLGNAVTNRKEQNYVIPFAHGMGLISDELYNSLQKNCKGDYTNVETRNVLCSRDISSFDEVTSGINKAYILDPSCEWLDDTENSPRRSLMKKYPTNFLSTNLKLPLLSCRSYTYFLMGYWANDDNVRKALHIQKGSVAKWHRCSSDIPYKLDIPNSYDYHVNLSRKGIRSLIYSGDHDMIVPFLATQAWIRSLNYSIVDDWRQWHTNDQVAGYTRTYSNQMTFATVKGGGHTAPEYRPKECFDMFSRWLSKKAL*