AlfalfaGEDB | Msa0204210

M. sativa cultivar zhongmu-4 / Msa0204210

KEGG: K08245
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF00026.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204210	XP_003595434.1	95.464	507	23	0	1	507	1	507	0.0	1002

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204210	sp\|Q42456\|ASPR1_ORYSJ	49.593	492	234	4	24	507	24	509	0.0	538

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204210	G7IQG4	95.464	507	23	0	1	507	1	507	0.0	1002

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0042410	Msa0204210	0.814094	1.834906e-51	-8.615850e-47
Msa0055590	Msa0204210	0.801101	1.055311e-48	-8.615850e-47
Msa0079650	Msa0204210	0.802698	4.959734e-49	-8.615850e-47
Msa0170320	Msa0204210	0.812048	5.158100e-51	-8.615850e-47
Msa0204210	Msa0244740	0.811286	7.554111e-51	-8.615850e-47
Msa0204210	Msa0247420	0.835603	1.523956e-56	-8.615850e-47
Msa0204210	Msa0260910	0.809144	2.188145e-50	-8.615850e-47
Msa0204210	Msa0299200	0.814875	1.232997e-51	-8.615850e-47
Msa0204210	Msa0331920	0.827560	1.462809e-54	-8.615850e-47
Msa0204210	Msa0356880	0.808732	2.680780e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204210	MtrunA17_Chr2g0302421	95.418	502	23	0	6	507	1	502	0.0	993
Msa0204210	MtrunA17_Chr4g0069631	66.667	507	159	2	1	507	1	497	0.0	734
Msa0204210	MtrunA17_Chr7g0271351	52.849	509	233	4	1	507	1	504	0.0	565
Msa0204210	MtrunA17_Chr1g0193211	51.267	513	239	5	1	507	1	508	0.0	559
Msa0204210	MtrunA17_Chr4g0075181	47.529	526	250	4	1	507	1	519	0.0	518
Msa0204210	MtrunA17_Chr2g0288851	49.123	513	252	3	1	507	1	510	6.19e-179	512

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204210	AT1G11910.1	50.198	504	239	5	7	507	12	506	0.0	528
Msa0204210	AT1G11910.2	50.198	504	239	5	7	507	23	517	0.0	527
Msa0204210	AT1G62290.1	49.597	496	236	4	20	506	22	512	0.0	526
Msa0204210	AT1G62290.2	49.597	496	236	4	20	506	22	512	0.0	526
Msa0204210	AT1G62290.5	49.574	470	223	4	20	480	22	486	2.44e-171	492
Msa0204210	AT4G04460.1	45.686	510	265	5	2	507	7	508	1.18e-170	491
Msa0204210	AT4G04460.2	45.490	510	262	6	2	507	7	504	5.28e-168	484
Msa0204210	AT1G62290.6	49.425	435	213	2	20	447	22	456	4.10e-159	460
Msa0204210	AT1G62290.4	49.425	435	213	2	20	447	22	456	4.10e-159	460
Msa0204210	AT1G62290.3	49.242	396	194	2	20	408	22	417	2.72e-140	410

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Find 121 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTACCAATTTCGTTAT+AGG	0.198459	2_1:+29122912	None:intergenic
AAATGTATCCTTCATCATAC+GGG	0.566577	2_1:+29122802	None:intergenic
AACAAATCCTTCTGTTCCAA+TGG	0.528562	2_1:+29120983	None:intergenic
AACACAACATTGAAATACTG+TGG	0.632514	2_1:+29123149	None:intergenic
AACATTCTTGTCCAGTAGCA+TGG	0.531676	2_1:-29123741	Msa0204210:five_prime_UTR
AACCATGCCATTGGAACAGA+AGG	0.503270	2_1:-29120990	Msa0204210:CDS
AAGGATCCAATGGCAGAAGT+AGG	0.522263	2_1:-29122073	Msa0204210:CDS
AATAAATATAACCATGCTAC+TGG	0.416409	2_1:+29123730	None:intergenic
AATACTCACACTCACTGATA+TGG	0.376145	2_1:+29117375	None:intergenic
AATATGTAGATAATGTCTAC+TGG	0.555773	2_1:-29119220	Msa0204210:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATCATCATCATCATCATA+AGG	-	chr2_1:29117483-29117502	Msa0204210:intron	30.0%
TTGTTACATGTCTTTGGATT+TGG	-	chr2_1:29117728-29117747	Msa0204210:intron	30.0%
GTACAATATTATGGGGAAAT+TGG	-	chr2_1:29117937-29117956	Msa0204210:intron	30.0%
TATTATGGGGAAATTGGTAT+TGG	-	chr2_1:29117943-29117962	Msa0204210:intron	30.0%
AACACAACATTGAAATACTG+TGG	+	chr2_1:29117976-29117995	None:intergenic	30.0%
AAATGTATCCTTCATCATAC+GGG	+	chr2_1:29118323-29118342	None:intergenic	30.0%
TTGTAATCTCACAAAATTCC+TGG	+	chr2_1:29118499-29118518	None:intergenic	30.0%
CTGGTAATAATTTGAGAAAG+TGG	+	chr2_1:29118814-29118833	None:intergenic	30.0%
TGACATTGATACATCAATAC+TGG	+	chr2_1:29118833-29118852	None:intergenic	30.0%
TTACTTTCCAATTTCTCAAG+AGG	-	chr2_1:29119126-29119145	Msa0204210:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	29117320	29123824	29117320	ID=Msa0204210;Name=Msa0204210
chr2_1	mRNA	29117320	29123824	29117320	ID=Msa0204210-mRNA-1;Parent=Msa0204210;Name=Msa0204210-mRNA-1;_AED=0.27;_eAED=0.27;_QI=164\|1\|1\|1\|0.8\|0.75\|16\|199\|507
chr2_1	exon	29117320	29117412	29117320	ID=Msa0204210-mRNA-1:exon:10479;Parent=Msa0204210-mRNA-1
chr2_1	exon	29119205	29119395	29119205	ID=Msa0204210-mRNA-1:exon:10478;Parent=Msa0204210-mRNA-1
chr2_1	exon	29119512	29119609	29119512	ID=Msa0204210-mRNA-1:exon:10477;Parent=Msa0204210-mRNA-1
chr2_1	exon	29119848	29119967	29119848	ID=Msa0204210-mRNA-1:exon:10476;Parent=Msa0204210-mRNA-1
chr2_1	exon	29120365	29120521	29120365	ID=Msa0204210-mRNA-1:exon:10475;Parent=Msa0204210-mRNA-1
chr2_1	exon	29120611	29120675	29120611	ID=Msa0204210-mRNA-1:exon:10474;Parent=Msa0204210-mRNA-1
chr2_1	exon	29120917	29121030	29120917	ID=Msa0204210-mRNA-1:exon:10473;Parent=Msa0204210-mRNA-1
chr2_1	exon	29121109	29121173	29121109	ID=Msa0204210-mRNA-1:exon:10472;Parent=Msa0204210-mRNA-1
chr2_1	exon	29121864	29121903	29121864	ID=Msa0204210-mRNA-1:exon:10471;Parent=Msa0204210-mRNA-1
chr2_1	exon	29121985	29122153	29121985	ID=Msa0204210-mRNA-1:exon:10470;Parent=Msa0204210-mRNA-1
chr2_1	exon	29122532	29122644	29122532	ID=Msa0204210-mRNA-1:exon:10469;Parent=Msa0204210-mRNA-1
chr2_1	exon	29122746	29122840	29122746	ID=Msa0204210-mRNA-1:exon:10468;Parent=Msa0204210-mRNA-1
chr2_1	exon	29122920	29122980	29122920	ID=Msa0204210-mRNA-1:exon:10467;Parent=Msa0204210-mRNA-1
chr2_1	exon	29123097	29123438	29123097	ID=Msa0204210-mRNA-1:exon:10466;Parent=Msa0204210-mRNA-1
chr2_1	exon	29123640	29123676	29123640	ID=Msa0204210-mRNA-1:exon:10465;Parent=Msa0204210-mRNA-1
chr2_1	exon	29123698	29123824	29123698	ID=Msa0204210-mRNA-1:exon:10464;Parent=Msa0204210-mRNA-1
chr2_1	five_prime_UTR	29123698	29123824	29123698	ID=Msa0204210-mRNA-1:five_prime_utr;Parent=Msa0204210-mRNA-1
chr2_1	five_prime_UTR	29123640	29123676	29123640	ID=Msa0204210-mRNA-1:five_prime_utr;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29123097	29123438	29123097	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29122920	29122980	29122920	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29122746	29122840	29122746	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29122532	29122644	29122532	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29121985	29122153	29121985	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29121864	29121903	29121864	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29121109	29121173	29121109	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29120917	29121030	29120917	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29120611	29120675	29120611	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29120365	29120521	29120365	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29119848	29119967	29119848	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29119512	29119609	29119512	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	CDS	29119311	29119395	29119311	ID=Msa0204210-mRNA-1:cds;Parent=Msa0204210-mRNA-1
chr2_1	three_prime_UTR	29119205	29119310	29119205	ID=Msa0204210-mRNA-1:three_prime_utr;Parent=Msa0204210-mRNA-1
chr2_1	three_prime_UTR	29117320	29117412	29117320	ID=Msa0204210-mRNA-1:three_prime_utr;Parent=Msa0204210-mRNA-1

Gene Sequence

>Msa0204210

ATGAGTTTGAAGTATATGCTGGTTGTTACATGTCTTTGGATTTGGTCTCTATCTTTGGCTTATACAATTTCTAATGATGGCTTGATGAGAATTAGTCTAAAAAAGAAGAATTTAGACATTCAAAGCCTTAACACTTCAAGAATTAATAGGGAAATTCATGAAAGAGATTTAGAGAGTGTTGATACAAATTATGGCTCAAAAGATGTTATATATCTTAAGAATTACTTTGATGTACAATATTATGGGGAAATTGGTATTGGTTCACCACCACAGTATTTCAATGTTGTGTTTGACACTGGTAGCTCTAATCTTTGGGTTCCATCTTCAAGATGCATCTTCTCAATTGCTTGCTATTTTCATTCGAAGTATAGGTCCGGAATATCTAGCACCTATAACGAAATTGGAGTACCGTGCGAAATCCCGTATGATGAAGGATACATTTATGGATTCTTCAGCCAAGACAATGTAAAAGTTGGGGATATAAATGTCAAAGACCAAGAATTTTGTGAGATTACAAGGGAAGGAAATTTTGCACTTTTAGCTCTTCCATTTGATGGTATACTTGGACTTGGATTTCAGGATGTTTCAGTTGGGAAAGTCACACCAGTGTGGTATAATATGATAGAACAAGGGCATATTTTGGACAAAGTTTTCTCCCTGTGGTTTAATAAGGATCCAATGGCAGAAGTAGGGGGTGAGATTGTCTTTGGTGGTGTGGACAAGAGGCATTTTAGAGGTGACCACACTTACTTTCCAATTTCTCAAGAGGGTTATTGGCAGATTGAAGTGGGGGATATTCTACTTGCAAATAATACAACAGGTTTATGTCAGGGTGGCTGTGCTGCAATAGTGGACTCGGGGACTACTTTAATTGCCGGTCCAACTGGTGTTGTGACTCAAATTAACCATGCCATTGGAACAGAAGGATTTGTTAGTTATGAGTGTAAAAACATTGTCCATAACTACGGAAATTCGATATGGGAATCATTGATTTCAGGGTTAAATCCTGAAATCTTATGTGCTGACATTAGACTTTGTTCAGATAATGGATTTCAAAGAAAGCATGATGTTATTGAAACAGTGGTGCATAATGAAAGTTGGGATGGAGTACCATTAAGAGAGAGTCTCTTTTGTAGTTTTTGCAATATGGTTGTCCTTTGGATGCAAAATCAGATTAAGCAAAGCAATGTAAAGGAAAAAGTATTAAAATATGTCGATGAGCTGTGCGAGAGGCTCCCGAATCCAGTTGGACAATCATTTATAAACTGCAGTAGTGTCTCAGATATGCCACACATTACATTCACATTTGGAAACAAGTTGTTTCCTCTCTCTCCAGAACAGTATGTTCTTAGAGTTGAATCAGACGATGGAGATTGTTCTCCTGTGTGCTATAGCGGTTTTGTAGCTCTTGATGTTCCTTCGCCACAGGGTCCCCTCTGGGTTGTTGGCAATATTTTCTTGCAGGCATATCATACGGTATTTGACTATGCCAATCTCCGTATAGGATTTGCAGAATCTGCATAG

Protein sequence

>Msa0204210

MSLKYMLVVTCLWIWSLSLAYTISNDGLMRISLKKKNLDIQSLNTSRINREIHERDLESVDTNYGSKDVIYLKNYFDVQYYGEIGIGSPPQYFNVVFDTGSSNLWVPSSRCIFSIACYFHSKYRSGISSTYNEIGVPCEIPYDEGYIYGFFSQDNVKVGDINVKDQEFCEITREGNFALLALPFDGILGLGFQDVSVGKVTPVWYNMIEQGHILDKVFSLWFNKDPMAEVGGEIVFGGVDKRHFRGDHTYFPISQEGYWQIEVGDILLANNTTGLCQGGCAAIVDSGTTLIAGPTGVVTQINHAIGTEGFVSYECKNIVHNYGNSIWESLISGLNPEILCADIRLCSDNGFQRKHDVIETVVHNESWDGVPLRESLFCSFCNMVVLWMQNQIKQSNVKEKVLKYVDELCERLPNPVGQSFINCSSVSDMPHITFTFGNKLFPLSPEQYVLRVESDDGDCSPVCYSGFVALDVPSPQGPLWVVGNIFLQAYHTVFDYANLRIGFAESA*