Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742500 | XP_003617548.1 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.94e-74 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742500 | sp|O82569|SUI1_SPUBR | 75.229 | 109 | 26 | 1 | 3 | 110 | 5 | 113 | 7.36e-57 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742500 | G7K3H5 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 1.88e-74 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0742500 | 0.807328 | 5.333085e-50 | -8.615850e-47 |
| Msa0060600 | Msa0742500 | 0.801738 | 7.814798e-49 | -8.615850e-47 |
| Msa0639030 | Msa0742500 | 0.810118 | 1.351192e-50 | -8.615850e-47 |
| Msa0657860 | Msa0742500 | 0.801060 | 1.076142e-48 | -8.615850e-47 |
| Msa0697600 | Msa0742500 | 0.804986 | 1.660098e-49 | -8.615850e-47 |
| Msa0722930 | Msa0742500 | 0.834413 | 3.041120e-56 | -8.615850e-47 |
| Msa0723140 | Msa0742500 | 0.842027 | 3.321480e-58 | -8.615850e-47 |
| Msa0738600 | Msa0742500 | 0.808471 | 3.046621e-50 | -8.615850e-47 |
| Msa0742500 | Msa0779540 | 0.989996 | 1.390556e-180 | -8.615850e-47 |
| Msa0742500 | Msa0818950 | 0.809509 | 1.827008e-50 | -8.615850e-47 |
| Msa0742500 | Msa0843280 | 0.834913 | 2.276469e-56 | -8.615850e-47 |
| Msa0742500 | Msa0883350 | 0.800656 | 1.301293e-48 | -8.615850e-47 |
| Msa0742500 | Msa0883660 | 0.810750 | 9.869076e-51 | -8.615850e-47 |
| Msa0742500 | Msa0984860 | 0.807819 | 4.195304e-50 | -8.615850e-47 |
| Msa0742500 | Msa1076630 | 0.800638 | 1.312343e-48 | -8.615850e-47 |
| Msa0742500 | Msa1108780 | 0.840344 | 9.201446e-58 | -8.615850e-47 |
| Msa0742500 | Msa1141250 | -0.800370 | 1.488170e-48 | -8.615850e-47 |
| Msa0742500 | Msa1237260 | 0.813866 | 2.060822e-51 | -8.615850e-47 |
| Msa0742500 | Msa1255520 | 0.805669 | 1.193656e-49 | -8.615850e-47 |
| Msa0742500 | Msa1292730 | 0.800922 | 1.147977e-48 | -8.615850e-47 |
| Msa0742500 | Msa1304850 | 0.811564 | 6.571962e-51 | -8.615850e-47 |
| Msa0742500 | Msa1405470 | 0.802585 | 5.231842e-49 | -8.615850e-47 |
| Msa0742500 | Msa1418580 | 0.811616 | 6.403827e-51 | -8.615850e-47 |
| Msa0742500 | Msa1457670 | -0.803922 | 2.766213e-49 | -8.615850e-47 |
| Msa0213090 | Msa0742500 | 0.844015 | 9.821456e-59 | -8.615850e-47 |
| Msa0411000 | Msa0742500 | 0.806308 | 8.763385e-50 | -8.615850e-47 |
| Msa0440110 | Msa0742500 | 0.801418 | 9.090907e-49 | -8.615850e-47 |
| Msa0448400 | Msa0742500 | 0.800671 | 1.291992e-48 | -8.615850e-47 |
| Msa0455230 | Msa0742500 | 0.809980 | 1.447254e-50 | -8.615850e-47 |
| Msa0247420 | Msa0742500 | 0.817070 | 3.989761e-52 | -8.615850e-47 |
| Msa0253370 | Msa0742500 | 0.827584 | 1.443465e-54 | -8.615850e-47 |
| Msa0330400 | Msa0742500 | 0.836466 | 9.204016e-57 | -8.615850e-47 |
| Msa0363460 | Msa0742500 | 0.810266 | 1.255617e-50 | -8.615850e-47 |
| Msa0502910 | Msa0742500 | 0.831729 | 1.415609e-55 | -8.615850e-47 |
| Msa0516310 | Msa0742500 | 0.814424 | 1.551632e-51 | -8.615850e-47 |
| Msa0533050 | Msa0742500 | 0.812432 | 4.253138e-51 | -8.615850e-47 |
| Msa0543900 | Msa0742500 | 0.809670 | 1.687143e-50 | -8.615850e-47 |
| Msa0584070 | Msa0742500 | 0.817673 | 2.918965e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742500 | MtrunA17_Chr5g0444201 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.63e-78 | 225 |
| Msa0742500 | MtrunA17_Chr3g0098971 | 84.404 | 109 | 17 | 0 | 2 | 110 | 4 | 112 | 3.07e-65 | 192 |
| Msa0742500 | MtrunA17_Chr4g0024171 | 71.560 | 109 | 30 | 1 | 3 | 110 | 5 | 113 | 9.29e-56 | 168 |
| Msa0742500 | MtrunA17_Chr2g0319561 | 72.072 | 111 | 29 | 1 | 2 | 110 | 4 | 114 | 6.68e-55 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742500 | AT5G54940.1 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0742500 | AT5G54940.3 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0742500 | AT5G54940.2 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0742500 | AT1G54290.1 | 72.727 | 110 | 29 | 1 | 2 | 110 | 4 | 113 | 8.44e-58 | 174 |
| Msa0742500 | AT4G27130.1 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.13e-57 | 174 |
| Msa0742500 | AT5G54760.2 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0742500 | AT5G54760.4 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0742500 | AT5G54760.3 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0742500 | AT5G54760.1 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
Find 29 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTTCTTGAGATCTTTA+AGG | 0.098306 | 5_1:+62419716 | None:intergenic |
| ACCTGGTGCATCTGATTCTT+TGG | 0.208720 | 5_1:+62419837 | None:intergenic |
| CAAAAGAGTATGTGCATATT+AGG | 0.278072 | 5_1:-62419813 | Msa0742500:CDS |
| TCAGTCCTTGCACTGTTGTT+AGG | 0.278405 | 5_1:+62419764 | None:intergenic |
| TAGAAGAGAGTTGAAGAGAT+TGG | 0.333969 | 5_1:+62420894 | None:intergenic |
| AAGGACAACATCAAGATTCA+TGG | 0.385779 | 5_1:-62419580 | Msa0742500:CDS |
| GATTCTTTGGCCTCAGCAAA+TGG | 0.405574 | 5_1:+62419850 | None:intergenic |
| GTTGTGAATTGCAAGGATCT+TGG | 0.420337 | 5_1:-62419676 | Msa0742500:CDS |
| AGAAGAGAGTTGAAGAGATT+GGG | 0.422313 | 5_1:+62420895 | None:intergenic |
| TCATGCTGGTCTTGCTAGAA+AGG | 0.426864 | 5_1:-62419599 | Msa0742500:CDS |
| AGTTGAAGAGATTGGGAATG+TGG | 0.436578 | 5_1:+62420902 | None:intergenic |
| TATCTCTATCTGCAGACTAC+AGG | 0.445137 | 5_1:-62420853 | Msa0742500:intron |
| TGCGTTGATCACCTTGGAGT+TGG | 0.445951 | 5_1:+62419644 | None:intergenic |
| TCTCACTTCCTCATTCATGC+TGG | 0.461083 | 5_1:-62419613 | Msa0742500:CDS |
| GCAAATGGATCAAATGTGCT+TGG | 0.480564 | 5_1:+62419865 | None:intergenic |
| AGAGATTGGGAATGTGGAGG+TGG | 0.498637 | 5_1:+62420908 | None:intergenic |
| CATTCTTGCGTTGATCACCT+TGG | 0.510216 | 5_1:+62419638 | None:intergenic |
| CAAATGGATCAAATGTGCTT+GGG | 0.511747 | 5_1:+62419866 | None:intergenic |
| CACATTTGATCCATTTGCTG+AGG | 0.534407 | 5_1:-62419860 | Msa0742500:CDS |
| ATTAGGATACAACAAAGGAA+TGG | 0.567289 | 5_1:-62419796 | Msa0742500:CDS |
| GAGATTGGGAATGTGGAGGT+GGG | 0.587196 | 5_1:+62420909 | None:intergenic |
| TAGCAAGACCAGCATGAATG+AGG | 0.588886 | 5_1:+62419605 | None:intergenic |
| AATCACAAAGAAAGTGTACA+TGG | 0.596673 | 5_1:-62419902 | Msa0742500:exon |
| GGAAAGATTATCCAACTCCA+AGG | 0.612457 | 5_1:-62419655 | Msa0742500:CDS |
| GCCAAAGAATCAGATGCACC+AGG | 0.626824 | 5_1:-62419838 | Msa0742500:CDS |
| AAGAGCCTAACAACAGTGCA+AGG | 0.631107 | 5_1:-62419769 | Msa0742500:CDS |
| TGGAAATGTTGTGAATTGCA+AGG | 0.663364 | 5_1:-62419683 | Msa0742500:CDS |
| TGAAGAGATTGGGAATGTGG+AGG | 0.681590 | 5_1:+62420905 | None:intergenic |
| TGCATATTAGGATACAACAA+AGG | 0.686189 | 5_1:-62419801 | Msa0742500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGAAAAAAAATTAAGAA+GGG | + | chr5_1:62420023-62420042 | None:intergenic | 10.0% |
| !! | TTTAAGAAAAAAAATTAAGA+AGG | + | chr5_1:62420024-62420043 | None:intergenic | 10.0% |
| !! | TCATATATATAATTCAAAAT+TGG | + | chr5_1:62420407-62420426 | None:intergenic | 10.0% |
| !! | TTAAGAAAAAAAATTAAGAA+GGG | + | chr5_1:62420023-62420042 | None:intergenic | 10.0% |
| !! | TTTAAGAAAAAAAATTAAGA+AGG | + | chr5_1:62420024-62420043 | None:intergenic | 10.0% |
| !! | TCATATATATAATTCAAAAT+TGG | + | chr5_1:62420407-62420426 | None:intergenic | 10.0% |
| !! | GGGTAAATTATTATTAATAA+CGG | + | chr5_1:62420003-62420022 | None:intergenic | 15.0% |
| !! | ATGTAATAAAATAAGATGTT+TGG | + | chr5_1:62420189-62420208 | None:intergenic | 15.0% |
| !! | GGGTAAATTATTATTAATAA+CGG | + | chr5_1:62420003-62420022 | None:intergenic | 15.0% |
| !! | ATGTAATAAAATAAGATGTT+TGG | + | chr5_1:62420189-62420208 | None:intergenic | 15.0% |
| !! | CTTTCATATATAGTTAATCA+TGG | - | chr5_1:62419881-62419900 | Msa0742500:CDS | 20.0% |
| !! | ATATTTACAATTGTTCCATA+TGG | + | chr5_1:62419968-62419987 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_1:62420221-62420240 | None:intergenic | 20.0% |
| !! | AAACATAATCGTTAAAACTA+AGG | - | chr5_1:62420457-62420476 | Msa0742500:intron | 20.0% |
| !! | CTTTCATATATAGTTAATCA+TGG | - | chr5_1:62419881-62419900 | Msa0742500:CDS | 20.0% |
| !! | ATATTTACAATTGTTCCATA+TGG | + | chr5_1:62419968-62419987 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_1:62420221-62420240 | None:intergenic | 20.0% |
| !! | AAACATAATCGTTAAAACTA+AGG | - | chr5_1:62420457-62420476 | Msa0742500:intron | 20.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_1:62419733-62419752 | Msa0742500:CDS | 25.0% |
| ! | AATATTCTCCAAGTTTGATA+TGG | - | chr5_1:62419818-62419837 | Msa0742500:CDS | 25.0% |
| ! | ATATTCTCCAAGTTTGATAT+GGG | - | chr5_1:62419819-62419838 | Msa0742500:CDS | 25.0% |
| ! | AATATAACTAGGAATATGAG+TGG | - | chr5_1:62420341-62420360 | Msa0742500:intron | 25.0% |
| !!! | ATGTGAATGAATGATTTGTT+TGG | - | chr5_1:62420426-62420445 | Msa0742500:intron | 25.0% |
| ! | CAGATTAAAACCAAATCAAA+AGG | + | chr5_1:62420485-62420504 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_1:62420542-62420561 | None:intergenic | 25.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_1:62419733-62419752 | Msa0742500:CDS | 25.0% |
| ! | AATATTCTCCAAGTTTGATA+TGG | - | chr5_1:62419818-62419837 | Msa0742500:CDS | 25.0% |
| ! | ATATTCTCCAAGTTTGATAT+GGG | - | chr5_1:62419819-62419838 | Msa0742500:CDS | 25.0% |
| ! | AATATAACTAGGAATATGAG+TGG | - | chr5_1:62420341-62420360 | Msa0742500:intron | 25.0% |
| !!! | ATGTGAATGAATGATTTGTT+TGG | - | chr5_1:62420426-62420445 | Msa0742500:intron | 25.0% |
| ! | CAGATTAAAACCAAATCAAA+AGG | + | chr5_1:62420485-62420504 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_1:62420542-62420561 | None:intergenic | 25.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_1:62419744-62419763 | None:intergenic | 30.0% | |
| TATTCTCCAAGTTTGATATG+GGG | - | chr5_1:62419820-62419839 | Msa0742500:CDS | 30.0% | |
| TATAATCCCCATATCAAACT+TGG | + | chr5_1:62419829-62419848 | None:intergenic | 30.0% | |
| ! | TAATCATGGTTTTCGACAAT+AGG | - | chr5_1:62419895-62419914 | Msa0742500:exon | 30.0% |
| ! | AGTTTGAGTTTGTAACCTTA+AGG | - | chr5_1:62419927-62419946 | Msa0742500:intron | 30.0% |
| AATTCAGACATAGTTCCTTA+AGG | + | chr5_1:62419945-62419964 | None:intergenic | 30.0% | |
| AACTATGTCTGAATTCCATA+TGG | - | chr5_1:62419950-62419969 | Msa0742500:intron | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_1:62420580-62420599 | Msa0742500:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_1:62420669-62420688 | Msa0742500:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_1:62420681-62420700 | Msa0742500:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_1:62420686-62420705 | Msa0742500:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_1:62420769-62420788 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_1:62420779-62420798 | Msa0742500:intron | 30.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_1:62419744-62419763 | None:intergenic | 30.0% | |
| TATTCTCCAAGTTTGATATG+GGG | - | chr5_1:62419820-62419839 | Msa0742500:CDS | 30.0% | |
| TATAATCCCCATATCAAACT+TGG | + | chr5_1:62419829-62419848 | None:intergenic | 30.0% | |
| ! | TAATCATGGTTTTCGACAAT+AGG | - | chr5_1:62419895-62419914 | Msa0742500:exon | 30.0% |
| ! | AGTTTGAGTTTGTAACCTTA+AGG | - | chr5_1:62419927-62419946 | Msa0742500:intron | 30.0% |
| AATTCAGACATAGTTCCTTA+AGG | + | chr5_1:62419945-62419964 | None:intergenic | 30.0% | |
| AACTATGTCTGAATTCCATA+TGG | - | chr5_1:62419950-62419969 | Msa0742500:intron | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_1:62420580-62420599 | Msa0742500:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_1:62420669-62420688 | Msa0742500:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_1:62420681-62420700 | Msa0742500:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_1:62420686-62420705 | Msa0742500:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_1:62420769-62420788 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_1:62420779-62420798 | Msa0742500:intron | 30.0% |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_1:62419590-62419609 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_1:62419591-62419610 | None:intergenic | 35.0% | |
| ATAACCTAGATCCTTGCAAT+CGG | - | chr5_1:62420230-62420249 | Msa0742500:intron | 35.0% | |
| !! | AACTAAGGAGCCTTTTGATT+TGG | - | chr5_1:62420472-62420491 | Msa0742500:intron | 35.0% |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_1:62420619-62420638 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_1:62420799-62420818 | Msa0742500:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_1:62420902-62420921 | Msa0742500:five_prime_UTR | 35.0% | |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_1:62419590-62419609 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_1:62419591-62419610 | None:intergenic | 35.0% | |
| ATAACCTAGATCCTTGCAAT+CGG | - | chr5_1:62420230-62420249 | Msa0742500:intron | 35.0% | |
| !! | AACTAAGGAGCCTTTTGATT+TGG | - | chr5_1:62420472-62420491 | Msa0742500:intron | 35.0% |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_1:62420619-62420638 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_1:62420799-62420818 | Msa0742500:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_1:62420902-62420921 | Msa0742500:five_prime_UTR | 35.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_1:62419583-62419602 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_1:62419629-62419648 | Msa0742500:CDS | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_1:62420526-62420545 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_1:62420527-62420546 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_1:62420528-62420547 | Msa0742500:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_1:62420620-62420639 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_1:62420622-62420641 | Msa0742500:intron | 40.0% |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_1:62420806-62420825 | Msa0742500:intron | 40.0% | |
| GGAAAGATTATCCAACTCCA+AGG | - | chr5_1:62420827-62420846 | Msa0742500:intron | 40.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_1:62419583-62419602 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_1:62419629-62419648 | Msa0742500:CDS | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_1:62420526-62420545 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_1:62420527-62420546 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_1:62420528-62420547 | Msa0742500:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_1:62420620-62420639 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_1:62420622-62420641 | Msa0742500:intron | 40.0% |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_1:62420806-62420825 | Msa0742500:intron | 40.0% | |
| GGAAAGATTATCCAACTCCA+AGG | - | chr5_1:62420827-62420846 | Msa0742500:intron | 40.0% | |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_1:62419580-62419599 | None:intergenic | 45.0% | |
| TCTTCCGATTGCAAGGATCT+AGG | + | chr5_1:62420237-62420256 | None:intergenic | 45.0% | |
| GTGTACTTCTTCCGATTGCA+AGG | + | chr5_1:62420244-62420263 | None:intergenic | 45.0% | |
| GATTCTTTGGCCTCAGCAAA+TGG | + | chr5_1:62420635-62420654 | None:intergenic | 45.0% | |
| ACCTGGTGCATCTGATTCTT+TGG | + | chr5_1:62420648-62420667 | None:intergenic | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_1:62420665-62420684 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_1:62420713-62420732 | Msa0742500:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_1:62420721-62420740 | None:intergenic | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_1:62420847-62420866 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_1:62420869-62420888 | Msa0742500:five_prime_UTR | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_1:62420880-62420899 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_1:62420883-62420902 | Msa0742500:five_prime_UTR | 45.0% |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_1:62419580-62419599 | None:intergenic | 45.0% | |
| TCTTCCGATTGCAAGGATCT+AGG | + | chr5_1:62420237-62420256 | None:intergenic | 45.0% | |
| GTGTACTTCTTCCGATTGCA+AGG | + | chr5_1:62420244-62420263 | None:intergenic | 45.0% | |
| GATTCTTTGGCCTCAGCAAA+TGG | + | chr5_1:62420635-62420654 | None:intergenic | 45.0% | |
| ACCTGGTGCATCTGATTCTT+TGG | + | chr5_1:62420648-62420667 | None:intergenic | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_1:62420665-62420684 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_1:62420713-62420732 | Msa0742500:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_1:62420721-62420740 | None:intergenic | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_1:62420847-62420866 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_1:62420869-62420888 | Msa0742500:five_prime_UTR | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_1:62420880-62420899 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_1:62420883-62420902 | Msa0742500:five_prime_UTR | 45.0% |
| !!! | GTTATATTTTAAAAATAATT+TGG | + | chr5_1:62420329-62420348 | None:intergenic | 5.0% |
| !!! | ATTATTTTTAAAATATAACT+AGG | - | chr5_1:62420330-62420349 | Msa0742500:intron | 5.0% |
| !!! | GTTATATTTTAAAAATAATT+TGG | + | chr5_1:62420329-62420348 | None:intergenic | 5.0% |
| !!! | ATTATTTTTAAAATATAACT+AGG | - | chr5_1:62420330-62420349 | Msa0742500:intron | 5.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_1:62419576-62419595 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_1:62419577-62419596 | None:intergenic | 50.0% | |
| GCCAAAGAATCAGATGCACC+AGG | - | chr5_1:62420644-62420663 | Msa0742500:intron | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_1:62420841-62420860 | None:intergenic | 50.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_1:62419576-62419595 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_1:62419577-62419596 | None:intergenic | 50.0% | |
| GCCAAAGAATCAGATGCACC+AGG | - | chr5_1:62420644-62420663 | Msa0742500:intron | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_1:62420841-62420860 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 62419573 | 62420931 | 62419573 | ID=Msa0742500;Name=Msa0742500 |
| chr5_1 | mRNA | 62419573 | 62420931 | 62419573 | ID=Msa0742500-mRNA-1;Parent=Msa0742500;Name=Msa0742500-mRNA-1;_AED=0.15;_eAED=0.21;_QI=101|0|0.5|1|0|0|2|0|110 |
| chr5_1 | exon | 62419573 | 62419928 | 62419573 | ID=Msa0742500-mRNA-1:exon:18340;Parent=Msa0742500-mRNA-1 |
| chr5_1 | exon | 62420854 | 62420931 | 62420854 | ID=Msa0742500-mRNA-1:exon:18339;Parent=Msa0742500-mRNA-1 |
| chr5_1 | five_prime_UTR | 62420854 | 62420931 | 62420854 | ID=Msa0742500-mRNA-1:five_prime_utr;Parent=Msa0742500-mRNA-1 |
| chr5_1 | five_prime_UTR | 62419906 | 62419928 | 62419906 | ID=Msa0742500-mRNA-1:five_prime_utr;Parent=Msa0742500-mRNA-1 |
| chr5_1 | CDS | 62419573 | 62419905 | 62419573 | ID=Msa0742500-mRNA-1:cds;Parent=Msa0742500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
