Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779540 | sp|O82569|SUI1_SPUBR | 75.229 | 109 | 26 | 1 | 3 | 110 | 5 | 113 | 7.36e-57 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779540 | G7K3H5 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 1.88e-74 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa0779540 | 0.802511 | 5.418378e-49 | -8.615850e-47 |
| Msa0021980 | Msa0779540 | 0.811261 | 7.647588e-51 | -8.615850e-47 |
| Msa0060600 | Msa0779540 | 0.810319 | 1.222619e-50 | -8.615850e-47 |
| Msa0105340 | Msa0779540 | 0.805551 | 1.264124e-49 | -8.615850e-47 |
| Msa0617370 | Msa0779540 | 0.805601 | 1.233961e-49 | -8.615850e-47 |
| Msa0617830 | Msa0779540 | 0.812065 | 5.114319e-51 | -8.615850e-47 |
| Msa0626230 | Msa0779540 | 0.812668 | 3.776573e-51 | -8.615850e-47 |
| Msa0639030 | Msa0779540 | 0.821907 | 3.145113e-53 | -8.615850e-47 |
| Msa0640380 | Msa0779540 | 0.806094 | 9.718117e-50 | -8.615850e-47 |
| Msa0641020 | Msa0779540 | 0.803126 | 4.045888e-49 | -8.615850e-47 |
| Msa0648300 | Msa0779540 | 0.803367 | 3.606645e-49 | -8.615850e-47 |
| Msa0656270 | Msa0779540 | 0.807457 | 5.008409e-50 | -8.615850e-47 |
| Msa0656680 | Msa0779540 | 0.805398 | 1.361221e-49 | -8.615850e-47 |
| Msa0657860 | Msa0779540 | 0.804909 | 1.722871e-49 | -8.615850e-47 |
| Msa0664020 | Msa0779540 | 0.816953 | 4.239065e-52 | -8.615850e-47 |
| Msa0697600 | Msa0779540 | 0.816508 | 5.332770e-52 | -8.615850e-47 |
| Msa0700070 | Msa0779540 | 0.805834 | 1.102276e-49 | -8.615850e-47 |
| Msa0722930 | Msa0779540 | 0.841660 | 4.152370e-58 | -8.615850e-47 |
| Msa0723140 | Msa0779540 | 0.852700 | 3.887776e-61 | -8.615850e-47 |
| Msa0738600 | Msa0779540 | 0.816652 | 4.951090e-52 | -8.615850e-47 |
| Msa0742500 | Msa0779540 | 0.989996 | 1.390556e-180 | -8.615850e-47 |
| Msa0779540 | Msa0818950 | 0.818207 | 2.211196e-52 | -8.615850e-47 |
| Msa0779540 | Msa0843280 | 0.843691 | 1.199422e-58 | -8.615850e-47 |
| Msa0779540 | Msa0883350 | 0.807847 | 4.137657e-50 | -8.615850e-47 |
| Msa0779540 | Msa0883390 | 0.805136 | 1.543985e-49 | -8.615850e-47 |
| Msa0779540 | Msa0883660 | 0.814396 | 1.573826e-51 | -8.615850e-47 |
| Msa0779540 | Msa0984860 | 0.815736 | 7.935773e-52 | -8.615850e-47 |
| Msa0779540 | Msa0988500 | 0.801864 | 7.361696e-49 | -8.615850e-47 |
| Msa0779540 | Msa1076630 | 0.804548 | 2.048716e-49 | -8.615850e-47 |
| Msa0779540 | Msa1080790 | 0.801578 | 8.428689e-49 | -8.615850e-47 |
| Msa0779540 | Msa1108780 | 0.846300 | 2.369108e-59 | -8.615850e-47 |
| Msa0779540 | Msa1141250 | -0.807264 | 5.502795e-50 | -8.615850e-47 |
| Msa0779540 | Msa1211390 | 0.803706 | 3.066614e-49 | -8.615850e-47 |
| Msa0779540 | Msa1237260 | 0.824714 | 6.949334e-54 | -8.615850e-47 |
| Msa0779540 | Msa1255520 | 0.817566 | 3.085816e-52 | -8.615850e-47 |
| Msa0779540 | Msa1292730 | 0.809249 | 2.077066e-50 | -8.615850e-47 |
| Msa0779540 | Msa1304850 | 0.820217 | 7.707599e-53 | -8.615850e-47 |
| Msa0779540 | Msa1365040 | -0.813340 | 2.690339e-51 | -8.615850e-47 |
| Msa0779540 | Msa1405470 | 0.814288 | 1.662681e-51 | -8.615850e-47 |
| Msa0779540 | Msa1418580 | 0.821085 | 4.870298e-53 | -8.615850e-47 |
| Msa0779540 | Msa1445250 | 0.802494 | 5.462085e-49 | -8.615850e-47 |
| Msa0779540 | Msa1457070 | 0.806483 | 8.049921e-50 | -8.615850e-47 |
| Msa0779540 | Msa1457670 | -0.814998 | 1.157645e-51 | -8.615850e-47 |
| Msa0153440 | Msa0779540 | 0.801892 | 7.265277e-49 | -8.615850e-47 |
| Msa0212180 | Msa0779540 | 0.801916 | 7.184326e-49 | -8.615850e-47 |
| Msa0213090 | Msa0779540 | 0.860133 | 2.554708e-63 | -8.615850e-47 |
| Msa0411000 | Msa0779540 | 0.817111 | 3.905476e-52 | -8.615850e-47 |
| Msa0440110 | Msa0779540 | 0.803250 | 3.813085e-49 | -8.615850e-47 |
| Msa0448400 | Msa0779540 | 0.809654 | 1.700602e-50 | -8.615850e-47 |
| Msa0455230 | Msa0779540 | 0.820111 | 8.151422e-53 | -8.615850e-47 |
| Msa0247420 | Msa0779540 | 0.821868 | 3.211543e-53 | -8.615850e-47 |
| Msa0253370 | Msa0779540 | 0.844099 | 9.324142e-59 | -8.615850e-47 |
| Msa0330400 | Msa0779540 | 0.852880 | 3.453317e-61 | -8.615850e-47 |
| Msa0362430 | Msa0779540 | 0.805758 | 1.143822e-49 | -8.615850e-47 |
| Msa0363460 | Msa0779540 | 0.820161 | 7.939893e-53 | -8.615850e-47 |
| Msa0496460 | Msa0779540 | 0.811221 | 7.804276e-51 | -8.615850e-47 |
| Msa0502910 | Msa0779540 | 0.835651 | 1.482152e-56 | -8.615850e-47 |
| Msa0516310 | Msa0779540 | 0.829004 | 6.561220e-55 | -8.615850e-47 |
| Msa0533050 | Msa0779540 | 0.822045 | 2.921696e-53 | -8.615850e-47 |
| Msa0543900 | Msa0779540 | 0.817736 | 2.825061e-52 | -8.615850e-47 |
| Msa0549740 | Msa0779540 | 0.812861 | 3.426717e-51 | -8.615850e-47 |
| Msa0584070 | Msa0779540 | 0.826002 | 3.444446e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779540 | MtrunA17_Chr5g0444201 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.63e-78 | 225 |
| Msa0779540 | MtrunA17_Chr3g0098971 | 84.404 | 109 | 17 | 0 | 2 | 110 | 4 | 112 | 3.07e-65 | 192 |
| Msa0779540 | MtrunA17_Chr4g0024171 | 71.560 | 109 | 30 | 1 | 3 | 110 | 5 | 113 | 9.29e-56 | 168 |
| Msa0779540 | MtrunA17_Chr2g0319561 | 72.072 | 111 | 29 | 1 | 2 | 110 | 4 | 114 | 6.68e-55 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779540 | AT5G54940.1 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0779540 | AT5G54940.3 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0779540 | AT5G54940.2 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0779540 | AT1G54290.1 | 72.727 | 110 | 29 | 1 | 2 | 110 | 4 | 113 | 8.44e-58 | 174 |
| Msa0779540 | AT4G27130.1 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.13e-57 | 174 |
| Msa0779540 | AT5G54760.2 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0779540 | AT5G54760.4 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0779540 | AT5G54760.3 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0779540 | AT5G54760.1 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
Find 29 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTTCTTGAGATCTTTA+AGG | 0.098306 | 5_2:+60788947 | None:intergenic |
| ACCTGGTGCATCTGATTCTT+TGG | 0.208720 | 5_2:+60789068 | None:intergenic |
| CAAAAGAGTATGTGCATATT+AGG | 0.278072 | 5_2:-60789044 | Msa0779540:CDS |
| TCAGTCCTTGCACTGTTGTT+AGG | 0.278405 | 5_2:+60788995 | None:intergenic |
| TAGAAGAGAGTTGAAGAGAT+TGG | 0.333969 | 5_2:+60790161 | None:intergenic |
| AAGGACAACATCAAGATTCA+TGG | 0.385779 | 5_2:-60788811 | Msa0779540:CDS |
| GATTCTTTGGCCTCAGCAAA+TGG | 0.405574 | 5_2:+60789081 | None:intergenic |
| GTTGTGAATTGCAAGGATCT+TGG | 0.420337 | 5_2:-60788907 | Msa0779540:CDS |
| AGAAGAGAGTTGAAGAGATT+GGG | 0.422313 | 5_2:+60790162 | None:intergenic |
| TCATGCTGGTCTTGCTAGAA+AGG | 0.426864 | 5_2:-60788830 | Msa0779540:CDS |
| AGTTGAAGAGATTGGGAATG+TGG | 0.436578 | 5_2:+60790169 | None:intergenic |
| TATCTCTATCTGCAGACTAC+AGG | 0.445137 | 5_2:-60790120 | Msa0779540:intron |
| TGCGTTGATCACCTTGGAGT+TGG | 0.445951 | 5_2:+60788875 | None:intergenic |
| TCTCACTTCCTCATTCATGC+TGG | 0.461083 | 5_2:-60788844 | Msa0779540:CDS |
| GCAAATGGATCAAATGTGCT+TGG | 0.480564 | 5_2:+60789096 | None:intergenic |
| AGAGATTGGGAATGTGGAGG+TGG | 0.498637 | 5_2:+60790175 | None:intergenic |
| CATTCTTGCGTTGATCACCT+TGG | 0.510216 | 5_2:+60788869 | None:intergenic |
| CAAATGGATCAAATGTGCTT+GGG | 0.511747 | 5_2:+60789097 | None:intergenic |
| CACATTTGATCCATTTGCTG+AGG | 0.534407 | 5_2:-60789091 | Msa0779540:CDS |
| ATTAGGATACAACAAAGGAA+TGG | 0.567289 | 5_2:-60789027 | Msa0779540:CDS |
| GAGATTGGGAATGTGGAGGT+GGG | 0.587196 | 5_2:+60790176 | None:intergenic |
| TAGCAAGACCAGCATGAATG+AGG | 0.588886 | 5_2:+60788836 | None:intergenic |
| AATCACAAAGAAAGTGTACA+TGG | 0.596673 | 5_2:-60789133 | Msa0779540:exon |
| GGAAAGATTATCCAACTCCA+AGG | 0.612457 | 5_2:-60788886 | Msa0779540:CDS |
| GCCAAAGAATCAGATGCACC+AGG | 0.626824 | 5_2:-60789069 | Msa0779540:CDS |
| AAGAGCCTAACAACAGTGCA+AGG | 0.631107 | 5_2:-60789000 | Msa0779540:CDS |
| TGGAAATGTTGTGAATTGCA+AGG | 0.663364 | 5_2:-60788914 | Msa0779540:CDS |
| TGAAGAGATTGGGAATGTGG+AGG | 0.681590 | 5_2:+60790172 | None:intergenic |
| TGCATATTAGGATACAACAA+AGG | 0.686189 | 5_2:-60789032 | Msa0779540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATATATATAATTCAAAAT+TGG | + | chr5_2:60789674-60789693 | None:intergenic | 10.0% |
| !! | TCATATATATAATTCAAAAT+TGG | + | chr5_2:60789674-60789693 | None:intergenic | 10.0% |
| !! | GGGTAAATTATTATTAATAA+CGG | + | chr5_2:60789233-60789252 | None:intergenic | 15.0% |
| !! | AGAAAAAAAATTATGAAGAA+GGG | + | chr5_2:60789253-60789272 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAATTATGAAGA+AGG | + | chr5_2:60789254-60789273 | None:intergenic | 15.0% |
| !! | ATGTAATAAAATAAGATGTT+TGG | + | chr5_2:60789422-60789441 | None:intergenic | 15.0% |
| !! | GGGTAAATTATTATTAATAA+CGG | + | chr5_2:60789233-60789252 | None:intergenic | 15.0% |
| !! | AGAAAAAAAATTATGAAGAA+GGG | + | chr5_2:60789253-60789272 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAATTATGAAGA+AGG | + | chr5_2:60789254-60789273 | None:intergenic | 15.0% |
| !! | ATGTAATAAAATAAGATGTT+TGG | + | chr5_2:60789422-60789441 | None:intergenic | 15.0% |
| !! | CTTTCATATATAGTTAATCA+TGG | - | chr5_2:60789111-60789130 | Msa0779540:CDS | 20.0% |
| !! | ATATTTACAATTGTTCCATA+TGG | + | chr5_2:60789198-60789217 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_2:60789454-60789473 | None:intergenic | 20.0% |
| !! | AAACATAATCGTTAAAACTA+AGG | - | chr5_2:60789724-60789743 | Msa0779540:intron | 20.0% |
| !! | CTTTCATATATAGTTAATCA+TGG | - | chr5_2:60789111-60789130 | Msa0779540:CDS | 20.0% |
| !! | ATATTTACAATTGTTCCATA+TGG | + | chr5_2:60789198-60789217 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_2:60789454-60789473 | None:intergenic | 20.0% |
| !! | AAACATAATCGTTAAAACTA+AGG | - | chr5_2:60789724-60789743 | Msa0779540:intron | 20.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_2:60788964-60788983 | Msa0779540:CDS | 25.0% |
| ! | AATATTCTCCAAGTTTGATA+TGG | - | chr5_2:60789049-60789068 | Msa0779540:CDS | 25.0% |
| ! | TATAATCACCATATCAAACT+TGG | + | chr5_2:60789060-60789079 | None:intergenic | 25.0% |
| ! | AATATAACTAGGAATATGAG+TGG | - | chr5_2:60789608-60789627 | Msa0779540:intron | 25.0% |
| !!! | ATGTGAATGAATGATTTGTT+TGG | - | chr5_2:60789693-60789712 | Msa0779540:intron | 25.0% |
| ! | CAGATTAAAACCAAATCAAA+AGG | + | chr5_2:60789752-60789771 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_2:60789809-60789828 | None:intergenic | 25.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_2:60788964-60788983 | Msa0779540:CDS | 25.0% |
| ! | AATATTCTCCAAGTTTGATA+TGG | - | chr5_2:60789049-60789068 | Msa0779540:CDS | 25.0% |
| ! | TATAATCACCATATCAAACT+TGG | + | chr5_2:60789060-60789079 | None:intergenic | 25.0% |
| ! | AATATAACTAGGAATATGAG+TGG | - | chr5_2:60789608-60789627 | Msa0779540:intron | 25.0% |
| !!! | ATGTGAATGAATGATTTGTT+TGG | - | chr5_2:60789693-60789712 | Msa0779540:intron | 25.0% |
| ! | CAGATTAAAACCAAATCAAA+AGG | + | chr5_2:60789752-60789771 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_2:60789809-60789828 | None:intergenic | 25.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_2:60788975-60788994 | None:intergenic | 30.0% | |
| ! | TAATCATGGTTTTCGACAAT+AGG | - | chr5_2:60789125-60789144 | Msa0779540:exon | 30.0% |
| ! | AGTTTGAGTTTGTAACCTTA+AGG | - | chr5_2:60789157-60789176 | Msa0779540:intron | 30.0% |
| AATTCAGACATAGTTCCTTA+AGG | + | chr5_2:60789175-60789194 | None:intergenic | 30.0% | |
| AACTATGTCTGAATTCCATA+TGG | - | chr5_2:60789180-60789199 | Msa0779540:intron | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_2:60789847-60789866 | Msa0779540:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_2:60789936-60789955 | Msa0779540:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_2:60789948-60789967 | Msa0779540:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_2:60789953-60789972 | Msa0779540:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_2:60790036-60790055 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_2:60790046-60790065 | Msa0779540:intron | 30.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_2:60788975-60788994 | None:intergenic | 30.0% | |
| ! | TAATCATGGTTTTCGACAAT+AGG | - | chr5_2:60789125-60789144 | Msa0779540:exon | 30.0% |
| ! | AGTTTGAGTTTGTAACCTTA+AGG | - | chr5_2:60789157-60789176 | Msa0779540:intron | 30.0% |
| AATTCAGACATAGTTCCTTA+AGG | + | chr5_2:60789175-60789194 | None:intergenic | 30.0% | |
| AACTATGTCTGAATTCCATA+TGG | - | chr5_2:60789180-60789199 | Msa0779540:intron | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_2:60789847-60789866 | Msa0779540:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_2:60789936-60789955 | Msa0779540:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_2:60789948-60789967 | Msa0779540:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_2:60789953-60789972 | Msa0779540:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_2:60790036-60790055 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_2:60790046-60790065 | Msa0779540:intron | 30.0% |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_2:60788821-60788840 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_2:60788822-60788841 | None:intergenic | 35.0% | |
| ATAACCTAGATCCTTGCAAT+CGG | - | chr5_2:60789463-60789482 | Msa0779540:intron | 35.0% | |
| !! | AACTAAGGAGCCTTTTGATT+TGG | - | chr5_2:60789739-60789758 | Msa0779540:intron | 35.0% |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_2:60789886-60789905 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_2:60790066-60790085 | Msa0779540:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_2:60790169-60790188 | Msa0779540:five_prime_UTR | 35.0% | |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_2:60788821-60788840 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_2:60788822-60788841 | None:intergenic | 35.0% | |
| ATAACCTAGATCCTTGCAAT+CGG | - | chr5_2:60789463-60789482 | Msa0779540:intron | 35.0% | |
| !! | AACTAAGGAGCCTTTTGATT+TGG | - | chr5_2:60789739-60789758 | Msa0779540:intron | 35.0% |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_2:60789886-60789905 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_2:60790066-60790085 | Msa0779540:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_2:60790169-60790188 | Msa0779540:five_prime_UTR | 35.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_2:60788814-60788833 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_2:60788860-60788879 | Msa0779540:CDS | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_2:60789793-60789812 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_2:60789794-60789813 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_2:60789795-60789814 | Msa0779540:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_2:60789887-60789906 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_2:60789889-60789908 | Msa0779540:intron | 40.0% |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_2:60790073-60790092 | Msa0779540:intron | 40.0% | |
| GGAAAGATTATCCAACTCCA+AGG | - | chr5_2:60790094-60790113 | Msa0779540:intron | 40.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_2:60788814-60788833 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_2:60788860-60788879 | Msa0779540:CDS | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_2:60789793-60789812 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_2:60789794-60789813 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_2:60789795-60789814 | Msa0779540:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_2:60789887-60789906 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_2:60789889-60789908 | Msa0779540:intron | 40.0% |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_2:60790073-60790092 | Msa0779540:intron | 40.0% | |
| GGAAAGATTATCCAACTCCA+AGG | - | chr5_2:60790094-60790113 | Msa0779540:intron | 40.0% | |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_2:60788811-60788830 | None:intergenic | 45.0% | |
| TCTTCCGATTGCAAGGATCT+AGG | + | chr5_2:60789470-60789489 | None:intergenic | 45.0% | |
| GTGTACTTCTTCCGATTGCA+AGG | + | chr5_2:60789477-60789496 | None:intergenic | 45.0% | |
| GATTCTTTGGCCTCAGCAAA+TGG | + | chr5_2:60789902-60789921 | None:intergenic | 45.0% | |
| ACCTGGTGCATCTGATTCTT+TGG | + | chr5_2:60789915-60789934 | None:intergenic | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_2:60789932-60789951 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_2:60789980-60789999 | Msa0779540:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_2:60789988-60790007 | None:intergenic | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_2:60790114-60790133 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_2:60790136-60790155 | Msa0779540:five_prime_UTR | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_2:60790147-60790166 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_2:60790150-60790169 | Msa0779540:five_prime_UTR | 45.0% |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_2:60788811-60788830 | None:intergenic | 45.0% | |
| TCTTCCGATTGCAAGGATCT+AGG | + | chr5_2:60789470-60789489 | None:intergenic | 45.0% | |
| GTGTACTTCTTCCGATTGCA+AGG | + | chr5_2:60789477-60789496 | None:intergenic | 45.0% | |
| GATTCTTTGGCCTCAGCAAA+TGG | + | chr5_2:60789902-60789921 | None:intergenic | 45.0% | |
| ACCTGGTGCATCTGATTCTT+TGG | + | chr5_2:60789915-60789934 | None:intergenic | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_2:60789932-60789951 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_2:60789980-60789999 | Msa0779540:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_2:60789988-60790007 | None:intergenic | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_2:60790114-60790133 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_2:60790136-60790155 | Msa0779540:five_prime_UTR | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_2:60790147-60790166 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_2:60790150-60790169 | Msa0779540:five_prime_UTR | 45.0% |
| !!! | GTTATATTTTAAAAATAATT+TGG | + | chr5_2:60789562-60789581 | None:intergenic | 5.0% |
| !!! | ATTATTTTTAAAATATAACT+AGG | - | chr5_2:60789563-60789582 | Msa0779540:intron | 5.0% |
| !!! | GTTATATTTTAAAAATAATT+TGG | + | chr5_2:60789562-60789581 | None:intergenic | 5.0% |
| !!! | ATTATTTTTAAAATATAACT+AGG | - | chr5_2:60789563-60789582 | Msa0779540:intron | 5.0% |
| !!! | GTTATATTTTAAAAATAATT+TGG | + | chr5_2:60789562-60789581 | None:intergenic | 5.0% |
| !!! | ATTATTTTTAAAATATAACT+AGG | - | chr5_2:60789563-60789582 | Msa0779540:intron | 5.0% |
| !!! | GTTATATTTTAAAAATAATT+TGG | + | chr5_2:60789562-60789581 | None:intergenic | 5.0% |
| !!! | ATTATTTTTAAAATATAACT+AGG | - | chr5_2:60789563-60789582 | Msa0779540:intron | 5.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_2:60788807-60788826 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_2:60788808-60788827 | None:intergenic | 50.0% | |
| GCCAAAGAATCAGATGCACC+AGG | - | chr5_2:60789911-60789930 | Msa0779540:intron | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_2:60790108-60790127 | None:intergenic | 50.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_2:60788807-60788826 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_2:60788808-60788827 | None:intergenic | 50.0% | |
| GCCAAAGAATCAGATGCACC+AGG | - | chr5_2:60789911-60789930 | Msa0779540:intron | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_2:60790108-60790127 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60788804 | 60790198 | 60788804 | ID=Msa0779540;Name=Msa0779540 |
| chr5_2 | mRNA | 60788804 | 60790198 | 60788804 | ID=Msa0779540-mRNA-1;Parent=Msa0779540;Name=Msa0779540-mRNA-1;_AED=0.15;_eAED=0.21;_QI=101|0|0.5|1|0|0|2|0|110 |
| chr5_2 | exon | 60788804 | 60789159 | 60788804 | ID=Msa0779540-mRNA-1:exon:17903;Parent=Msa0779540-mRNA-1 |
| chr5_2 | exon | 60790121 | 60790198 | 60790121 | ID=Msa0779540-mRNA-1:exon:17902;Parent=Msa0779540-mRNA-1 |
| chr5_2 | five_prime_UTR | 60790121 | 60790198 | 60790121 | ID=Msa0779540-mRNA-1:five_prime_utr;Parent=Msa0779540-mRNA-1 |
| chr5_2 | five_prime_UTR | 60789137 | 60789159 | 60789137 | ID=Msa0779540-mRNA-1:five_prime_utr;Parent=Msa0779540-mRNA-1 |
| chr5_2 | CDS | 60788804 | 60789136 | 60788804 | ID=Msa0779540-mRNA-1:cds;Parent=Msa0779540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
