AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379090 MtrunA17_Chr2g0285371 90.909 462 42 0 11 472 8 469 0.0 870
Msa1379090 MtrunA17_Chr2g0285351 85.097 463 67 2 11 472 8 469 0.0 832
Msa1379090 MtrunA17_Chr2g0285381 76.321 473 103 3 1 472 1 465 0.0 732
Msa1379090 MtrunA17_Chr3g0133011 65.086 464 154 4 16 472 34 496 0.0 629
Msa1379090 MtrunA17_Chr4g0009701 62.584 449 161 5 25 472 28 470 0.0 575
Msa1379090 MtrunA17_Chr4g0009681 60.684 468 176 6 7 472 6 467 0.0 568
Msa1379090 MtrunA17_Chr4g0009661 60.802 449 169 5 25 472 28 470 0.0 565
Msa1379090 MtrunA17_Chr4g0009651 60.134 449 172 5 25 472 28 470 0.0 558
Msa1379090 MtrunA17_Chr4g0009711 58.388 459 180 6 19 472 18 470 0.0 535
Msa1379090 MtrunA17_Chr4g0009671 60.557 431 163 5 43 472 11 435 0.0 535
Msa1379090 MtrunA17_Chr4g0009641 57.330 457 160 7 17 472 24 446 0.0 523
Msa1379090 MtrunA17_Chr4g0009721 50.641 468 176 7 7 472 5 419 4.62e-158 454
Msa1379090 MtrunA17_Chr3g0093971 42.888 457 239 6 17 468 11 450 2.14e-130 385
Msa1379090 MtrunA17_Chr7g0249431 39.000 500 255 10 14 472 8 498 1.44e-119 359
Msa1379090 MtrunA17_Chr8g0338461 38.934 488 261 8 14 468 8 491 4.76e-119 357
Msa1379090 MtrunA17_Chr7g0234051 38.683 486 262 7 16 468 9 491 3.56e-118 355
Msa1379090 MtrunA17_Chr7g0234041 35.745 470 227 11 16 436 6 449 2.92e-86 272
Msa1379090 MtrunA17_Chr4g0038311 31.224 474 300 14 11 472 3 462 4.42e-65 217
Msa1379090 MtrunA17_Chr1g0199971 29.449 472 295 15 17 472 6 455 6.40e-60 203
Msa1379090 MtrunA17_Chr2g0309541 28.661 478 304 13 11 472 6 462 1.17e-59 202
Msa1379090 MtrunA17_Chr1g0199991 31.423 471 283 17 19 472 8 455 3.09e-59 201
Msa1379090 MtrunA17_Chr2g0309521 30.405 444 281 14 36 472 39 461 1.07e-57 197
Msa1379090 MtrunA17_Chr2g0309511 30.405 444 281 12 36 472 39 461 1.84e-57 197
Msa1379090 MtrunA17_Chr8g0385871 31.144 472 285 15 17 472 14 461 3.38e-57 196
Msa1379090 MtrunA17_Chr7g0219051 30.310 452 269 14 40 472 39 463 3.39e-57 196
Msa1379090 MtrunA17_Chr2g0318911 29.424 486 305 15 1 472 1 462 1.53e-56 194
Msa1379090 MtrunA17_Chr2g0281621 31.448 442 276 15 36 467 35 459 8.50e-56 192
Msa1379090 MtrunA17_Chr3g0094811 28.604 444 275 13 44 472 37 453 3.45e-54 188
Msa1379090 MtrunA17_Chr5g0431301 28.692 474 302 14 16 472 6 460 4.66e-54 188
Msa1379090 MtrunA17_Chr3g0131731 29.087 471 296 13 18 472 12 460 1.89e-53 186
Msa1379090 MtrunA17_Chr2g0279371 47.059 187 84 1 21 207 12 183 1.96e-53 177
Msa1379090 MtrunA17_Chr4g0068841 28.506 435 283 13 53 472 55 476 2.10e-53 186
Msa1379090 MtrunA17_Chr3g0090331 29.025 441 282 11 37 472 75 489 5.60e-52 183
Msa1379090 MtrunA17_Chr4g0047861 30.317 442 283 15 36 467 53 479 1.08e-51 182
Msa1379090 MtrunA17_Chr3g0126031 28.982 452 282 13 36 472 28 455 5.79e-51 179
Msa1379090 MtrunA17_Chr3g0126051 28.306 484 293 16 16 472 6 462 8.09e-51 179
Msa1379090 MtrunA17_Chr3g0118851 31.034 435 262 15 40 467 81 484 1.06e-50 179
Msa1379090 MtrunA17_Chr7g0221551 28.392 479 302 14 9 472 4 456 3.22e-50 177
Msa1379090 MtrunA17_Chr1g0153881 31.881 436 258 14 37 467 90 491 1.48e-49 176
Msa1379090 MtrunA17_Chr4g0020241 28.989 445 275 14 37 472 74 486 1.21e-48 174
Msa1379090 MtrunA17_Chr3g0118841 29.167 432 273 12 40 467 82 484 1.32e-48 174
Msa1379090 MtrunA17_Chr2g0304931 27.907 430 272 12 55 471 56 460 1.07e-47 171
Msa1379090 MtrunA17_Chr2g0327401 27.854 438 259 14 53 472 102 500 1.34e-47 171
Msa1379090 MtrunA17_Chr4g0028271 26.389 432 262 10 53 467 99 491 1.35e-46 168
Msa1379090 MtrunA17_Chr1g0171411 26.437 435 257 10 53 466 85 477 6.14e-46 166
Msa1379090 MtrunA17_Chr4g0068861 28.571 406 256 15 40 428 88 476 1.18e-45 165
Msa1379090 MtrunA17_Chr3g0118881 28.798 441 272 13 40 467 81 492 1.84e-45 165
Msa1379090 MtrunA17_Chr4g0028261 28.271 428 260 13 53 467 120 513 5.52e-45 164
Msa1379090 MtrunA17_Chr1g0153941 29.284 461 264 15 37 467 78 506 3.00e-44 162
Msa1379090 MtrunA17_Chr3g0118831 27.586 435 252 13 37 467 78 453 7.77e-44 160
Msa1379090 MtrunA17_Chr4g0028281 25.522 431 273 9 53 470 97 492 7.92e-44 160
Msa1379090 MtrunA17_Chr2g0281641 29.545 396 251 13 89 472 7 386 2.64e-43 157
Msa1379090 MtrunA17_Chr3g0118861 27.477 444 252 13 37 467 76 462 9.95e-43 157
Msa1379090 MtrunA17_Chr1g0199171 26.588 425 270 14 52 466 91 483 3.24e-42 156
Msa1379090 MtrunA17_Chr4g0028241 25.629 437 267 10 54 470 92 490 4.52e-42 156
Msa1379090 MtrunA17_Chr2g0327381 27.391 460 274 14 53 470 96 537 7.55e-42 156
Msa1379090 MtrunA17_Chr3g0118891 28.176 433 244 14 40 467 81 451 1.35e-41 154
Msa1379090 MtrunA17_Chr2g0279381 38.049 205 118 4 229 430 13 211 1.10e-38 139
Msa1379090 MtrunA17_Chr1g0204191 27.397 438 245 16 53 472 107 489 2.34e-37 143
Msa1379090 MtrunA17_Chr5g0447441 25.917 436 268 13 52 472 42 437 1.92e-36 139
Msa1379090 MtrunA17_Chr2g0327371 34.419 215 118 5 40 253 79 271 4.78e-32 128
Msa1379090 MtrunA17_Chr2g0285401 80.645 62 12 0 375 436 29 90 6.69e-30 112
Msa1379090 MtrunA17_Chr4g0044051 24.424 434 277 12 52 472 46 441 2.37e-29 119
Msa1379090 MtrunA17_Chr1g0153931 35.870 184 110 4 37 217 76 254 1.91e-28 113
Msa1379090 MtrunA17_Chr1g0165811 29.302 215 136 6 44 255 37 238 1.03e-23 100
Msa1379090 MtrunA17_Chr1g0165821 32.867 143 84 4 338 472 39 177 6.09e-19 84.3
Msa1379090 MtrunA17_Chr1g0153921 31.140 228 130 10 241 467 9 210 8.67e-17 79.3
Msa1379090 MtrunA17_Chr6g0457241 53.571 56 26 0 397 452 1 56 1.99e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379090 AT5G09640.1 53.763 465 202 8 16 472 6 465 3.37e-177 505
Msa1379090 AT2G22920.2 54.751 442 169 5 34 472 22 435 9.23e-175 498
Msa1379090 AT1G73300.1 55.730 445 168 4 29 472 25 441 1.53e-174 497
Msa1379090 AT1G73300.2 55.730 445 168 4 29 472 25 441 1.53e-174 497
Msa1379090 AT1G33540.1 54.195 441 198 4 34 472 26 464 1.88e-173 495
Msa1379090 AT3G10450.1 53.933 445 176 4 29 472 21 437 8.58e-173 493
Msa1379090 AT5G36180.1 55.955 445 167 4 29 472 25 441 4.03e-172 491
Msa1379090 AT1G73280.1 53.173 457 182 5 20 472 13 441 2.33e-171 489
Msa1379090 AT2G22970.1 53.182 440 177 4 34 472 22 433 3.22e-171 488
Msa1379090 AT1G73290.1 53.483 445 176 5 29 472 24 438 2.44e-168 481
Msa1379090 AT1G73270.2 54.318 440 172 3 34 472 30 441 2.89e-168 481
Msa1379090 AT1G73270.1 54.318 440 172 3 34 472 30 441 3.63e-168 481
Msa1379090 AT2G22980.1 53.604 444 171 6 31 472 20 430 6.42e-168 480
Msa1379090 AT1G73310.1 53.708 445 177 4 29 472 25 441 7.47e-168 480
Msa1379090 AT2G23000.1 54.091 440 177 4 34 472 22 437 2.46e-167 479
Msa1379090 AT2G23000.2 54.091 440 177 4 34 472 22 437 2.46e-167 479
Msa1379090 AT2G22990.1 54.091 440 175 5 34 472 20 433 3.07e-167 478
Msa1379090 AT2G23010.1 52.402 458 190 5 16 472 7 437 4.20e-167 478
Msa1379090 AT2G23010.2 51.965 458 192 5 16 472 7 437 1.50e-165 474
Msa1379090 AT3G12203.1 51.310 458 188 4 16 472 14 437 5.26e-165 473
Msa1379090 AT3G12203.3 52.045 440 181 3 34 472 6 416 7.89e-164 469
Msa1379090 AT1G33540.2 54.048 420 189 4 55 472 4 421 3.08e-163 468
Msa1379090 AT2G22970.3 53.125 416 167 3 34 448 22 410 2.25e-161 464
Msa1379090 AT2G22970.4 53.140 414 166 3 34 446 22 408 3.53e-161 462
Msa1379090 AT3G10450.2 53.222 419 167 4 55 472 4 394 1.63e-160 460
Msa1379090 AT3G10450.4 53.461 419 167 3 29 446 21 412 3.00e-160 460
Msa1379090 AT2G22990.5 52.727 440 172 6 34 472 20 424 4.80e-159 457
Msa1379090 AT2G22980.2 53.110 418 162 5 31 446 20 405 2.53e-156 450
Msa1379090 AT2G22980.4 51.963 433 172 6 31 459 20 420 2.77e-156 451
Msa1379090 AT2G22990.3 52.093 430 177 5 34 459 20 424 9.29e-154 445
Msa1379090 AT2G22990.4 53.140 414 168 4 34 446 20 408 1.51e-153 443
Msa1379090 AT2G22920.1 53.117 401 158 4 34 431 22 395 9.73e-153 441
Msa1379090 AT3G12240.1 49.103 446 198 4 28 472 19 436 1.95e-152 441
Msa1379090 AT3G12230.1 48.984 443 197 4 31 472 21 435 2.25e-150 436
Msa1379090 AT1G73310.2 52.696 408 165 3 29 435 25 405 4.83e-150 434
Msa1379090 AT1G73290.3 52.723 404 161 4 29 431 24 398 3.25e-148 429
Msa1379090 AT3G10450.3 52.672 393 158 3 55 446 4 369 5.87e-148 427
Msa1379090 AT3G12220.1 49.210 443 196 3 31 472 21 435 1.04e-147 429
Msa1379090 AT3G12203.2 50.490 408 172 3 66 472 1 379 2.61e-144 418
Msa1379090 AT3G12220.2 48.210 419 188 3 55 472 15 405 1.81e-134 394
Msa1379090 AT1G73280.2 50.532 376 155 4 20 391 13 361 6.62e-126 371
Msa1379090 AT5G36180.5 52.316 367 146 4 107 472 1 339 2.33e-125 368
Msa1379090 AT5G36180.3 52.316 367 146 4 107 472 1 339 2.33e-125 368
Msa1379090 AT1G73280.4 50.409 367 153 4 107 472 1 339 1.12e-123 364
Msa1379090 AT4G12910.1 39.264 489 256 8 13 467 11 492 9.92e-123 367
Msa1379090 AT2G22980.3 49.315 365 149 6 31 391 20 352 3.76e-117 348
Msa1379090 AT5G36180.2 52.047 342 136 3 107 447 1 315 1.53e-115 342
Msa1379090 AT2G22990.6 51.014 345 142 5 129 472 1 319 5.42e-115 341
Msa1379090 AT2G22990.2 50.435 345 144 5 129 472 1 319 2.11e-113 337
Msa1379090 AT1G73280.3 50.292 342 141 4 132 472 1 314 2.75e-113 337
Msa1379090 AT3G25420.1 35.887 496 282 9 11 472 1 494 5.12e-113 342
Msa1379090 AT2G22920.4 50.625 320 130 3 34 352 22 314 1.72e-112 335
Msa1379090 AT2G22970.2 50.157 319 132 3 34 352 22 313 5.18e-112 333
Msa1379090 AT5G36180.4 49.425 348 146 4 107 451 1 321 8.69e-105 316
Msa1379090 AT4G12910.2 37.832 452 240 8 13 430 11 455 4.50e-103 315
Msa1379090 AT1G73290.2 55.556 261 113 2 34 293 29 287 1.88e-102 308
Msa1379090 AT1G73310.3 47.879 330 144 3 107 435 1 303 2.39e-102 309
Msa1379090 AT2G22980.5 48.750 320 130 5 129 446 1 288 2.45e-99 300
Msa1379090 AT2G22920.3 52.128 282 104 5 194 472 3 256 2.48e-95 288
Msa1379090 AT3G12220.3 53.191 235 109 1 31 264 21 255 2.29e-79 252
Msa1379090 AT3G12220.3 53.793 145 66 1 328 472 240 383 3.41e-46 165
Msa1379090 AT5G23210.1 31.692 467 288 14 27 472 38 494 3.85e-64 216
Msa1379090 AT4G30810.1 30.090 442 285 11 37 472 38 461 7.62e-63 212
Msa1379090 AT3G52000.1 29.801 453 265 13 36 472 63 478 1.94e-61 208
Msa1379090 AT4G30610.1 32.292 480 276 17 16 472 8 461 4.47e-61 207
Msa1379090 AT3G52020.1 30.201 447 274 11 36 472 79 497 6.77e-59 202
Msa1379090 AT3G17180.1 29.977 437 272 14 53 472 55 474 7.20e-59 201
Msa1379090 AT2G22960.1 66.176 136 45 1 337 472 50 184 1.13e-58 191
Msa1379090 AT4G15100.1 30.638 470 297 15 16 467 17 475 1.42e-58 201
Msa1379090 AT5G08260.1 31.473 448 285 15 36 472 39 475 3.57e-58 199
Msa1379090 AT3G52010.1 28.667 450 278 12 36 472 64 483 7.00e-58 199
Msa1379090 AT2G05850.1 28.850 461 264 18 36 472 63 483 6.76e-56 193
Msa1379090 AT2G24000.1 29.821 446 287 13 37 472 31 460 7.62e-56 192
Msa1379090 AT3G63470.1 28.959 442 283 11 36 472 81 496 1.37e-55 193
Msa1379090 AT3G07990.1 30.090 442 278 15 40 472 37 456 1.43e-55 192
Msa1379090 AT2G35780.1 31.011 445 268 16 40 472 33 450 3.23e-55 191
Msa1379090 AT2G24010.1 30.337 445 278 15 36 472 30 450 7.43e-54 187
Msa1379090 AT1G11080.1 31.473 448 279 14 36 468 50 484 9.27e-53 185
Msa1379090 AT1G61130.1 29.844 449 275 15 36 468 31 455 1.03e-52 184
Msa1379090 AT1G11080.2 31.473 448 279 14 36 468 50 484 1.25e-52 185
Msa1379090 AT5G23210.3 31.206 423 261 13 27 428 38 451 1.49e-52 184
Msa1379090 AT3G02110.1 29.844 449 280 14 40 472 41 470 2.12e-52 184
Msa1379090 AT2G35770.1 30.201 447 268 12 40 472 41 457 2.95e-52 183
Msa1379090 AT5G22980.1 30.162 431 252 14 53 470 100 494 1.30e-50 180
Msa1379090 AT2G33530.1 27.646 463 267 15 40 472 37 461 2.22e-50 178
Msa1379090 AT1G43780.1 28.105 459 282 14 36 472 37 469 3.03e-50 178
Msa1379090 AT1G28110.1 29.111 450 281 13 37 472 32 457 6.51e-50 177
Msa1379090 AT1G28110.2 29.111 450 281 13 37 472 32 457 6.51e-50 177
Msa1379090 AT2G24010.2 29.130 460 279 16 36 472 30 465 8.43e-49 174
Msa1379090 AT5G23210.5 30.175 401 254 12 89 472 8 399 1.95e-48 171
Msa1379090 AT5G42240.1 29.139 453 284 16 36 472 32 463 3.39e-48 172
Msa1379090 AT2G12480.3 27.679 448 291 14 36 472 31 456 7.77e-48 171
Msa1379090 AT3G17180.2 29.545 396 245 14 53 431 55 433 1.18e-47 170
Msa1379090 AT5G23210.2 30.000 400 254 12 90 472 8 398 1.68e-47 169
Msa1379090 AT3G45010.1 27.378 431 274 12 49 470 99 499 2.65e-47 171
Msa1379090 AT3G10410.1 27.830 424 265 13 53 467 101 492 3.37e-46 168
Msa1379090 AT2G12480.4 27.009 448 270 13 36 472 31 432 1.36e-45 165
Msa1379090 AT2G12480.1 26.786 448 269 13 36 472 31 430 1.32e-44 162
Msa1379090 AT5G42230.1 27.556 450 295 14 36 472 28 459 2.63e-44 162
Msa1379090 AT5G42230.2 27.556 450 295 14 36 472 28 459 2.63e-44 162
Msa1379090 AT2G24010.3 27.629 485 279 17 36 472 1 461 8.64e-44 160
Msa1379090 AT2G12480.2 26.726 449 269 14 36 472 31 431 5.60e-43 157
Msa1379090 AT5G23210.4 29.213 356 227 11 90 428 8 355 5.71e-36 137
Msa1379090 AT2G24010.4 29.310 348 202 14 36 362 1 325 2.48e-30 121
Msa1379090 AT1G15000.1 23.963 434 274 14 52 472 36 426 5.49e-29 119
Msa1379090 AT3G56540.1 35.669 157 94 3 36 191 79 229 2.21e-27 110
Msa1379090 AT5G22960.1 29.878 164 90 2 53 216 36 174 8.99e-24 98.6
Msa1379090 AT2G24000.2 26.207 290 197 8 190 472 118 397 3.23e-22 99.0

Find 156 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTGCCCTTATCATAAT+TGG 0.109593 tig0020262:+91923 Msa1379090:intergenic
CATATTTCCTTATGGGTTAT+TGG 0.147425 tig0020262:-87848 Msa1379090:CDS
GAGAAACTTAGGTAACTTTA+AGG 0.165900 tig0020262:-86247 Msa1379090:three_prime_UTR
TCATTCATTGCTAAATTATA+TGG 0.220119 tig0020262:+92012 Msa1379090:intergenic
AGATTTCATGATTTCCTCTT+TGG 0.245184 tig0020262:-91565 Msa1379090:CDS
AGGCTTCATTCTCTACGTTT+TGG 0.249270 tig0020262:-86284 Msa1379090:three_prime_UTR
TTGTTTGCAGGAAATGAAAA+AGG 0.253261 tig0020262:-88855 Msa1379090:intron
CTATGTCTTCCAACACTCTA+AGG 0.266936 tig0020262:-91623 Msa1379090:five_prime_UTR
AGCATTCATAATTTCCTCTT+TGG 0.267904 tig0020262:-92361 Msa1379090:five_prime_UTR
ATATTTCCTTATGGGTTATT+GGG 0.271697 tig0020262:-87847 Msa1379090:CDS
TACACCAATGAATAAAATTC+AGG 0.271940 tig0020262:-86181 Msa1379090:three_prime_UTR
GAGTTATACATATTTCCTTA+TGG 0.272703 tig0020262:-87856 Msa1379090:CDS
TCTGGCCTTATGCTTGAAAT+TGG 0.277015 tig0020262:-91194 Msa1379090:intron
TGACATGATAGTTCCATTCT+TGG 0.281474 tig0020262:-87372 Msa1379090:CDS
AACCCGGTTTCAAGCATAAA+AGG 0.293014 tig0020262:+92238 Msa1379090:intergenic
TCCATAGTGCAGTTTCTTCC+TGG 0.300810 tig0020262:-92277 Msa1379090:five_prime_UTR
ACTATTCCATTGTTGATGAT+TGG 0.322769 tig0020262:-87322 Msa1379090:CDS
TCGCCCATTGCCTATATTGT+TGG 0.326906 tig0020262:-92474 Msa1379090:five_prime_UTR
ACTTCATTTGATTGAAACTT+TGG 0.327111 tig0020262:+89044 Msa1379090:intergenic
GAGCTGACATAACAAATAAA+TGG 0.328986 tig0020262:-92392 Msa1379090:five_prime_UTR
TATTATATTTGTAGATTTGC+CGG 0.329137 tig0020262:-89283 Msa1379090:CDS
TCAAATGAAGTTTACATTGC+TGG 0.337164 tig0020262:-89032 Msa1379090:CDS
ACATGATAATCATAGCTGTT+AGG 0.338091 tig0020262:+87541 Msa1379090:intergenic
AATATAGGCAATGGACGAAA+TGG 0.338994 tig0020262:+91667 Msa1379090:intergenic
TTTCTTTAGGGATACTTGTT+GGG 0.341742 tig0020262:-88520 Msa1379090:intron
TCTTCACCCAATTATGATAA+GGG 0.343589 tig0020262:-91930 Msa1379090:five_prime_UTR
TTTCAAGTGTAAAGTGAAAC+TGG 0.350590 tig0020262:-86549 Msa1379090:three_prime_UTR
CATTCTTTAGGCCGGTATTC+CGG 0.351637 tig0020262:+86649 Msa1379090:intergenic
GAGATTTGTGCTGAGGAAAT+TGG 0.355841 tig0020262:+88006 Msa1379090:intergenic
AGGATGATCCTCTCATACTA+TGG 0.360528 tig0020262:-91247 Msa1379090:CDS
CCTGGTTGCTCTGCTTTGTC+TGG 0.360578 tig0020262:-91212 Msa1379090:CDS
CCTCTCATTCTATGGCTAAC+TGG 0.363733 tig0020262:-92039 Msa1379090:five_prime_UTR
TTAGGGATATCCAACTTATA+AGG 0.363956 tig0020262:+87559 Msa1379090:intergenic
AAAATTAATGATTGAAAGTT+CGG 0.364629 tig0020262:-86515 Msa1379090:three_prime_UTR
GCATTCGTTCACTAATTTAC+AGG 0.365116 tig0020262:-87501 Msa1379090:intron
TTTGCGAACATTATCATCAT+TGG 0.369155 tig0020262:+87824 Msa1379090:intergenic
AGTTATACATATTTCCTTAT+GGG 0.370329 tig0020262:-87855 Msa1379090:CDS
TTCTTCACCCAATTATGATA+AGG 0.372508 tig0020262:-91931 Msa1379090:five_prime_UTR
CTTTCTTTAGGGATACTTGT+TGG 0.381040 tig0020262:-88521 Msa1379090:intron
AATTACCAATTTCAAGCATA+AGG 0.381861 tig0020262:+91189 Msa1379090:intergenic
TCTATAGTAAAGTTTCTTCC+TGG 0.395127 tig0020262:-91475 Msa1379090:CDS
AGGAGGATCCTCTCATTCTA+TGG 0.395516 tig0020262:-92047 Msa1379090:five_prime_UTR
CCTCTCATACTATGGCTAAC+TGG 0.396512 tig0020262:-91239 Msa1379090:CDS
ACTTATGCCACAACAGAATC+TGG 0.397364 tig0020262:-89246 Msa1379090:CDS
ACAACAAAGGCCAACAATAT+AGG 0.401573 tig0020262:+92464 Msa1379090:intergenic
CATACAAATGACCAAGTTGC+AGG 0.404512 tig0020262:-87290 Msa1379090:CDS
GTTCTCTTGAAAGGTTCTCT+TGG 0.413535 tig0020262:-86206 Msa1379090:three_prime_UTR
GCACTATTTGCCACAATTCA+AGG 0.421226 tig0020262:-91841 Msa1379090:five_prime_UTR
GCATAAAAGGAAGGGGTCCT+TGG 0.426486 tig0020262:+92251 Msa1379090:intergenic
CATGATAATCATAGCTGTTA+GGG 0.426927 tig0020262:+87542 Msa1379090:intergenic
ACAACAAGGGACAATAATAT+AGG 0.429851 tig0020262:+91652 Msa1379090:intergenic
AACTTATCAATTTCTAAGAA+AGG 0.434513 tig0020262:-89190 Msa1379090:intron
CATGTAAATCTCAGTAGAAA+AGG 0.435691 tig0020262:-87523 Msa1379090:CDS
GTACAAAAGGAAGGGGTCCT+TGG 0.436146 tig0020262:+91449 Msa1379090:intergenic
TCTTGATTAATTAGGTATGT+TGG 0.436860 tig0020262:-91332 Msa1379090:intron
AGAATGAGAGGATCCTCCTT+TGG 0.438181 tig0020262:+92051 Msa1379090:intergenic
GGCAAATAGTGCATTGTGAT+TGG 0.444855 tig0020262:+91852 Msa1379090:intergenic
TGTGGGAGTGGGAGAGAAAG+AGG 0.447442 tig0020262:-92115 Msa1379090:five_prime_UTR
GACACACAGCTCCGGAATAC+CGG 0.450257 tig0020262:-86660 Msa1379090:CDS
ATTAATTAGGTATGTTGGAG+TGG 0.450452 tig0020262:-91327 Msa1379090:intron
AGTATGAGAGGATCATCCTT+TGG 0.453644 tig0020262:+91251 Msa1379090:intergenic
TAAGTGAAGCCTGTGGAAAC+CGG 0.454907 tig0020262:+89264 Msa1379090:intergenic
AGTCCCATTCCATGAGCAAA+AGG 0.456013 tig0020262:+88457 Msa1379090:intergenic
GCTTCAAGAGAGAGAAACTT+AGG 0.458857 tig0020262:-86258 Msa1379090:three_prime_UTR
GATAGTAAAAGAAGAAGAAA+AGG 0.459203 tig0020262:+92331 Msa1379090:intergenic
ATCATAATTGGGTGAAGAAA+CGG 0.464404 tig0020262:+91935 Msa1379090:intergenic
CATGCTTGTGTTGCCAAGAA+TGG 0.464724 tig0020262:+87359 Msa1379090:intergenic
GGAAGGGGTCCTTGGAATCC+AGG 0.464903 tig0020262:+91457 Msa1379090:intergenic
GGAAGGGGTCCTTGGAATCC+AGG 0.464903 tig0020262:+92259 Msa1379090:intergenic
GCATTGCCCTTATCATAATT+GGG 0.467944 tig0020262:+91924 Msa1379090:intergenic
TCCAGGAAGAAACTGCACTA+TGG 0.468856 tig0020262:+92276 Msa1379090:intergenic
CAGTTTCTTCCTGGATTCCA+AGG 0.469739 tig0020262:-92268 Msa1379090:five_prime_UTR
AACATGTCAAAACATTCTTT+AGG 0.471328 tig0020262:+86637 Msa1379090:intergenic
CATTGGCCCAATAACCCATA+AGG 0.474768 tig0020262:+87841 Msa1379090:intergenic
TGTTGCCTCAAAATCAGATT+AGG 0.480131 tig0020262:+89394 Msa1379090:intergenic
CTCTGATATACCTTATAAGT+TGG 0.485810 tig0020262:-87569 Msa1379090:CDS
ATTGCTGGTGATTCGTACTC+TGG 0.488962 tig0020262:-89017 Msa1379090:CDS
TTTAGTGAAGTTCTCTTGAA+AGG 0.489083 tig0020262:-86215 Msa1379090:three_prime_UTR
GGCACGATGGGTTTAAATTG+AGG 0.491514 tig0020262:-86338 Msa1379090:three_prime_UTR
TCATAATTTCCTCTTTGGAA+TGG 0.491796 tig0020262:-92356 Msa1379090:five_prime_UTR
TCACTTTACACTTGAAACAT+TGG 0.502454 tig0020262:+86555 Msa1379090:intergenic
ATATAGGCAATGGACGAAAT+GGG 0.503931 tig0020262:+91668 Msa1379090:intergenic
AAGTTTCTTCCTGGATTCCA+AGG 0.506864 tig0020262:-91466 Msa1379090:CDS
CCTGGAGATTTATCCATGGT+TGG 0.509586 tig0020262:+88829 Msa1379090:intergenic
TTCTTTAGGGATACTTGTTG+GGG 0.509607 tig0020262:-88519 Msa1379090:intron
GTTGATAAGGTATGTGGGAG+TGG 0.510967 tig0020262:-92127 Msa1379090:intron
GTAGATTTGCCGGTTTCCAC+AGG 0.511485 tig0020262:-89273 Msa1379090:CDS
TGCTTTCAAGTTGCAACATG+TGG 0.513785 tig0020262:-91499 Msa1379090:CDS
ATGTTTGTTGATAAGGTATG+TGG 0.516782 tig0020262:-92133 Msa1379090:intron
AATTACGTTGTATAGTTCAT+CGG 0.521646 tig0020262:+88429 Msa1379090:intergenic
TCATGATTTCCTCTTTGGAA+AGG 0.523684 tig0020262:-91560 Msa1379090:CDS
CTATGGCTAACTGGTGGACC+TGG 0.525006 tig0020262:-91230 Msa1379090:CDS
AGCCACACCTCCTTGAATTG+TGG 0.526100 tig0020262:+91831 Msa1379090:intergenic
CCAACCATGGATAAATCTCC+AGG 0.530034 tig0020262:-88829 Msa1379090:intron
AGGCCAACAATATAGGCAAT+GGG 0.531916 tig0020262:+92471 Msa1379090:intergenic
AATAACATAAACAGAACAGC+AGG 0.535681 tig0020262:-86582 Msa1379090:three_prime_UTR
TGTCAAAACATTCTTTAGGC+CGG 0.539530 tig0020262:+86641 Msa1379090:intergenic
ATTACTCGACAGCTTAAAAG+TGG 0.540742 tig0020262:+87977 Msa1379090:intergenic
TTGATAAGGTATGTGGGAGT+GGG 0.544562 tig0020262:-92126 Msa1379090:intron
AAGGCCAACAATATAGGCAA+TGG 0.545152 tig0020262:+92470 Msa1379090:intergenic
GAATGCTGTAACAAATAGAA+AGG 0.545712 tig0020262:-88497 Msa1379090:CDS
TGAGTGACATAACAAATGAA+TGG 0.546362 tig0020262:-91596 Msa1379090:exon
TCATCAAGCCACTCACAACT+CGG 0.550092 tig0020262:+88073 Msa1379090:intergenic
CGGTTTCAAGCATAAAAGGA+AGG 0.551042 tig0020262:+92242 Msa1379090:intergenic
CATTCTTGGCAACACAAGCA+TGG 0.552672 tig0020262:-87358 Msa1379090:CDS
GGGTGGAGGACACACAGCTC+CGG 0.555292 tig0020262:-86668 Msa1379090:CDS
TGCAGGGAAGTGTTGCGAAA+TGG 0.557534 tig0020262:-87603 Msa1379090:intron
CCAGACAAAGCAGAGCAACC+AGG 0.565074 tig0020262:+91212 Msa1379090:intergenic
GCCTCAAAATCAGATTAGGC+AGG 0.565384 tig0020262:+89398 Msa1379090:intergenic
TCTTTGATGTGTTTACAAAG+TGG 0.566894 tig0020262:-86130 Msa1379090:three_prime_UTR
CTCATTCTATGGCTAACTGG+TGG 0.567871 tig0020262:-92036 Msa1379090:five_prime_UTR
ACTCAGCTCCCTTAGAGTGT+TGG 0.568988 tig0020262:+91614 Msa1379090:intergenic
CCAGTTAGCCATAGTATGAG+AGG 0.570952 tig0020262:+91239 Msa1379090:intergenic
TGGTTTCGTGTTGCTAAATG+TGG 0.572330 tig0020262:-92301 Msa1379090:five_prime_UTR
GAAAAGGAACCTTTCCAAAG+AGG 0.576659 tig0020262:+91551 Msa1379090:intergenic
CCAGTTAGCCATAGAATGAG+AGG 0.576803 tig0020262:+92039 Msa1379090:intergenic
TGTTTGTTGATAAGGTATGT+GGG 0.577215 tig0020262:-92132 Msa1379090:intron
ATGTGAAATCGTGGCACGAT+GGG 0.579225 tig0020262:-86350 Msa1379090:three_prime_UTR
AGGGACAATAATATAGGCAA+TGG 0.581150 tig0020262:+91658 Msa1379090:intergenic
GGTTTCAAGCATAAAAGGAA+GGG 0.584126 tig0020262:+92243 Msa1379090:intergenic
TATGTCTTCCAACACTCTAA+GGG 0.586125 tig0020262:-91622 Msa1379090:five_prime_UTR
GTCCCATTCCATGAGCAAAA+GGG 0.590161 tig0020262:+88458 Msa1379090:intergenic
TGCCACAATTCAAGGAGGTG+TGG 0.592195 tig0020262:-91833 Msa1379090:five_prime_UTR
TGTTGGAGTGGGTGAACAAG+AGG 0.593743 tig0020262:-91315 Msa1379090:CDS
CATCAAGCCACTCACAACTC+GGG 0.594908 tig0020262:+88074 Msa1379090:intergenic
TGTGAGCTTGTGCAATCTAA+CGG 0.596509 tig0020262:-92526 Msa1379090:five_prime_UTR
AGATATCAGTTCATTTGATG+AGG 0.597989 tig0020262:-88232 Msa1379090:intron
TTTAGCACCAGATTCTGTTG+TGG 0.599524 tig0020262:+89239 Msa1379090:intergenic
GAGGCAACATTCATGGACAA+AGG 0.601022 tig0020262:-89380 Msa1379090:intron
GGCAAGAACAGGAGAAATTG+TGG 0.602706 tig0020262:-86413 Msa1379090:three_prime_UTR
TTAATTAGGTATGTTGGAGT+GGG 0.605926 tig0020262:-91326 Msa1379090:intron
TTGACCTGGAGATTTATCCA+TGG 0.606484 tig0020262:+88825 Msa1379090:intergenic
GTTTCAAGCATAAAAGGAAG+GGG 0.608914 tig0020262:+92244 Msa1379090:intergenic
ATGATACTGAAAATTCTCCA+AGG 0.620699 tig0020262:-88054 Msa1379090:CDS
TATATAGTAGCTTACAACAA+AGG 0.624701 tig0020262:+92451 Msa1379090:intergenic
CTCATACTATGGCTAACTGG+TGG 0.626625 tig0020262:-91236 Msa1379090:CDS
CTGTCTCCAATCATCAACAA+TGG 0.629618 tig0020262:+87316 Msa1379090:intergenic
GAAAAGGAACCATTCCAAAG+AGG 0.631935 tig0020262:+92347 Msa1379090:intergenic
ATACAAATGACCAAGTTGCA+GGG 0.634663 tig0020262:-87289 Msa1379090:intron
TTTGTACTAATGTGAAATCG+TGG 0.635000 tig0020262:-86359 Msa1379090:three_prime_UTR
ATTTGTGCTGAGGAAATTGG+TGG 0.636527 tig0020262:+88009 Msa1379090:intergenic
GCAATTTGAGATTTGTGCTG+AGG 0.637624 tig0020262:+87999 Msa1379090:intergenic
ATCTGAGAACAATCCAAAGG+AGG 0.648164 tig0020262:-92064 Msa1379090:five_prime_UTR
TGAATCTGAGAACAATCCAA+AGG 0.648342 tig0020262:-92067 Msa1379090:five_prime_UTR
TGAATCAGAGAGGAATCCAA+AGG 0.653936 tig0020262:-91267 Msa1379090:CDS
AATGTGAAATCGTGGCACGA+TGG 0.657753 tig0020262:-86351 Msa1379090:three_prime_UTR
CAAAGCGCTACACATACAGA+AGG 0.660091 tig0020262:-87805 Msa1379090:intron
ACTACTTCATTGAATCAGAG+AGG 0.667054 tig0020262:-91277 Msa1379090:CDS
TTTGTGCTGAGGAAATTGGT+GGG 0.670722 tig0020262:+88010 Msa1379090:intergenic
TGTGCAAGTGTAGATACACA+AGG 0.671859 tig0020262:-87166 Msa1379090:intron
AGACATAGTAGCATACAACA+AGG 0.684379 tig0020262:+91638 Msa1379090:intergenic
GACATAGTAGCATACAACAA+GGG 0.685115 tig0020262:+91639 Msa1379090:intergenic
TTGTTGATGATTGGAGACAG+TGG 0.718131 tig0020262:-87313 Msa1379090:CDS
ATAACATAAACAGAACAGCA+GGG 0.721765 tig0020262:-86581 Msa1379090:three_prime_UTR
CTATTTGCCACAATTCAAGG+AGG 0.741038 tig0020262:-91838 Msa1379090:five_prime_UTR
TGTGGCATAAGTGAAGCCTG+TGG 0.746387 tig0020262:+89257 Msa1379080:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATTTTAAATATA+TGG - tig0020262:86501-86520 Msa1379090:three_prime_UTR 0.0%
!! AATAAAAAATGATTATCATA+AGG + tig0020262:86970-86989 Msa1379090:intergenic 10.0%
!!! TTTATTTTTAATCTATAGTA+TGG - tig0020262:87297-87316 Msa1379090:CDS 10.0%
!!! TTATTTTTAATCTATAGTAT+GGG - tig0020262:87298-87317 Msa1379090:CDS 10.0%
!!! TTTTTATTTCTTCTTTATAT+TGG - tig0020262:88655-88674 Msa1379090:intron 10.0%
!! ATTGTTAATTGTTAATTTAT+TGG - tig0020262:88975-88994 Msa1379090:intron 10.0%
!! AATAAAATAAACATATGAAA+AGG + tig0020262:90476-90495 Msa1379090:intergenic 10.0%
!! AAAATATTTCAAGATATATA+TGG + tig0020262:90768-90787 Msa1379090:intergenic 10.0%
!! AAAAAATAAGTATAGAATTT+GGG + tig0020262:91830-91849 Msa1379090:intergenic 10.0%
!!! AAATTCTATACTTATTTTTT+GGG - tig0020262:91830-91849 Msa1379090:five_prime_UTR 10.0%
!! TAAAAAAAACTTAAAAACCA+TGG + tig0020262:86490-86509 Msa1379090:intergenic 15.0%
!! AAACGTGATAAAAAAAAAAT+TGG - tig0020262:86688-86707 Msa1379090:intron 15.0%
!! TTCATATTTCTTGATTAATT+AGG - tig0020262:87338-87357 Msa1379090:CDS 15.0%
!!! TATTGTTGTTAGTAAAAAAA+TGG - tig0020262:87567-87586 Msa1379090:CDS 15.0%
!!! ATGTTTTATTGACATATATA+AGG + tig0020262:88229-88248 Msa1379090:intergenic 15.0%
!!! ATAACATAATTTTCGTTATT+TGG + tig0020262:89583-89602 Msa1379090:intergenic 15.0%
!! TTATAAATAAATCTTTGTAG+TGG - tig0020262:89599-89618 Msa1379090:intron 15.0%
!! AGATTATATTACTTTCTTTA+GGG - tig0020262:90146-90165 Msa1379090:intron 15.0%
!! TTTATATATAATGACCATTA+TGG - tig0020262:91448-91467 Msa1379090:CDS 15.0%
!! AAACAAATATTAATTCAACT+TGG + tig0020262:91486-91505 Msa1379090:intergenic 15.0%
!!! TGTTAATTTTTAAGAAAAAC+CGG + tig0020262:91610-91629 Msa1379090:intergenic 15.0%
!! CAAAAAATAAGTATAGAATT+TGG + tig0020262:91831-91850 Msa1379090:intergenic 15.0%
!!! CAAATTCTATACTTATTTTT+TGG - tig0020262:91829-91848 Msa1379090:five_prime_UTR 15.0%
!!! AATTCTATACTTATTTTTTG+GGG - tig0020262:91831-91850 Msa1379090:five_prime_UTR 15.0%
!! AAAATTAATGATTGAAAGTT+CGG - tig0020262:92163-92182 Msa1379090:intron 15.0%
!!! TTTTCTTCATGACAAAAAAA+GGG - tig0020262:86264-86283 Msa1379090:three_prime_UTR 20.0%
!!! TTCTTTTACTATCACATATT+TGG - tig0020262:86357-86376 Msa1379090:three_prime_UTR 20.0%
!! TCATTCATTGCTAAATTATA+TGG + tig0020262:86669-86688 Msa1379090:intergenic 20.0%
!! AAAAAAATTGGTAGAATGAT+AGG - tig0020262:86700-86719 Msa1379090:intron 20.0%
!! TTATCCAAAAGTGAAAAATT+TGG + tig0020262:87528-87547 Msa1379090:intergenic 20.0%
!! TTGTTAGTAAAAAAATGGAT+AGG - tig0020262:87572-87591 Msa1379090:CDS 20.0%
!! TGTTAGTAAAAAAATGGATA+GGG - tig0020262:87573-87592 Msa1379090:CDS 20.0%
!! TTGCAAATGACTTATAATTT+AGG - tig0020262:87656-87675 Msa1379090:intron 20.0%
!! AAATGACTTATAATTTAGGA+TGG - tig0020262:87660-87679 Msa1379090:intron 20.0%
!! AAATTTATCTCAAAGATAAC+AGG - tig0020262:88076-88095 Msa1379090:CDS 20.0%
!! TATATGTCAATAAAACATGA+TGG - tig0020262:88231-88250 Msa1379090:intron 20.0%
!!! TCAAGATTTTTTTTTCTCTT+GGG + tig0020262:88344-88363 Msa1379090:intergenic 20.0%
!!! TTCAAGATTTTTTTTTCTCT+TGG + tig0020262:88345-88364 Msa1379090:intergenic 20.0%
!! TAGCCAAATAATATATTCAT+GGG + tig0020262:88397-88416 Msa1379090:intergenic 20.0%
!! ATTAGTGTTCACAAAAAAAA+AGG - tig0020262:88608-88627 Msa1379090:intron 20.0%
!! TGAAAAATGATTTAATCATG+TGG + tig0020262:88771-88790 Msa1379090:intergenic 20.0%
!! TAGTTATAATTCTTCTTTGT+AGG - tig0020262:89118-89137 Msa1379090:intron 20.0%
!! AAGACATTCAAATTGAAATT+AGG - tig0020262:89142-89161 Msa1379090:intron 20.0%
!! TATTATATTTGTAGATTTGC+CGG - tig0020262:89395-89414 Msa1379090:CDS 20.0%
!!! AACTTATCAATTTCTAAGAA+AGG - tig0020262:89488-89507 Msa1379090:intron 20.0%
!! CTAAAGAAAGTAATATAATC+TGG + tig0020262:90147-90166 Msa1379090:intergenic 20.0%
!! CAGATTATATTACTTTCTTT+AGG - tig0020262:90145-90164 Msa1379090:intron 20.0%
!! CACTGTATTACATAAATATA+TGG + tig0020262:90736-90755 Msa1379090:intergenic 20.0%
!! AGTTATACATATTTCCTTAT+GGG - tig0020262:90823-90842 Msa1379090:intron 20.0%
!!! GAATTTTTAATGGAAAATAG+AGG + tig0020262:90990-91009 Msa1379090:intergenic 20.0%
!!! TTTTATATTTACGATAACAG+TGG - tig0020262:91277-91296 Msa1379090:CDS 20.0%
!!! GTTAATTTTTAAGAAAAACC+GGG + tig0020262:91609-91628 Msa1379090:intergenic 20.0%
!!! AAAGCTAAGCAATTTATTTT+AGG - tig0020262:91773-91792 Msa1379090:five_prime_UTR 20.0%
!!! AATGATTGATCAAATTTTCA+GGG - tig0020262:91990-92009 Msa1379090:five_prime_UTR 20.0%
!!! AAAACCTGAATTTTATTCAT+TGG + tig0020262:92504-92523 Msa1379090:intergenic 20.0%
! TATATAGTAGCTTACAACAA+AGG + tig0020262:86230-86249 Msa1379090:intergenic 25.0%
!! CTTTTCTTCATGACAAAAAA+AGG - tig0020262:86263-86282 Msa1379090:three_prime_UTR 25.0%
! GATAGTAAAAGAAGAAGAAA+AGG + tig0020262:86350-86369 Msa1379090:intergenic 25.0%
!! CATATTCATGTTTGTTGATA+AGG - tig0020262:86538-86557 Msa1379090:three_prime_UTR 25.0%
! AAAAGAAGAAGAAGAAGAAA+AGG + tig0020262:87146-87165 Msa1379090:intergenic 25.0%
! TCTTGATTAATTAGGTATGT+TGG - tig0020262:87346-87365 Msa1379090:CDS 25.0%
! AATTACCAATTTCAAGCATA+AGG + tig0020262:87492-87511 Msa1379090:intergenic 25.0%
!! CTTTCCAAATTTTTCACTTT+TGG - tig0020262:87521-87540 Msa1379090:CDS 25.0%
! ATCCAAAATATTGAGTTTCT+GGG + tig0020262:88110-88129 Msa1379090:intergenic 25.0%
!!! AAACTCAATATTTTGGATGA+GGG - tig0020262:88112-88131 Msa1379090:CDS 25.0%
!!! CAAGATTTTTTTTTCTCTTG+GGG + tig0020262:88343-88362 Msa1379090:intergenic 25.0%
! TACCCCATGAATATATTATT+TGG - tig0020262:88391-88410 Msa1379090:intron 25.0%
! AGCCAAATAATATATTCATG+GGG + tig0020262:88396-88415 Msa1379090:intergenic 25.0%
! GTAGCCAAATAATATATTCA+TGG + tig0020262:88398-88417 Msa1379090:intergenic 25.0%
! TTTGAACCAACAAAATTGTT+TGG + tig0020262:88422-88441 Msa1379090:intergenic 25.0%
!! TAACGTGAAAAGCAATATTT+TGG - tig0020262:88866-88885 Msa1379090:intron 25.0%
!! GTCAATTATGTTAGTTTCTA+GGG - tig0020262:89057-89076 Msa1379090:CDS 25.0%
! AAATCTTCACCAACTATATA+GGG + tig0020262:89097-89116 Msa1379090:intergenic 25.0%
! TTAAAAAAGGAGGAATACAA+TGG - tig0020262:89254-89273 Msa1379090:CDS 25.0%
! TAAAAAAGGAGGAATACAAT+GGG - tig0020262:89255-89274 Msa1379090:CDS 25.0%
! AATACGAGTATCTAAATACA+TGG + tig0020262:89337-89356 Msa1379090:intergenic 25.0%
!!! TAAGATTTTTTTTTCTTGCC+AGG - tig0020262:89365-89384 Msa1379090:intron 25.0%
! AAATAAATCTTTGTAGTGGT+TGG - tig0020262:89603-89622 Msa1379090:intron 25.0%
! ACTTCATTTGATTGAAACTT+TGG + tig0020262:89637-89656 Msa1379090:intergenic 25.0%
! ATAATCAATCTTGAAGCTAT+TGG + tig0020262:90106-90125 Msa1379090:intergenic 25.0%
! AATTACGTTGTATAGTTCAT+CGG + tig0020262:90252-90271 Msa1379090:intergenic 25.0%
! GGAAATATGTATAACTCTAA+GGG + tig0020262:90819-90838 Msa1379090:intergenic 25.0%
! AGGAAATATGTATAACTCTA+AGG + tig0020262:90820-90839 Msa1379090:intergenic 25.0%
! GAGTTATACATATTTCCTTA+TGG - tig0020262:90822-90841 Msa1379090:intron 25.0%
!! ATATTTCCTTATGGGTTATT+GGG - tig0020262:90831-90850 Msa1379090:intron 25.0%
!! CAAATGTGGAGAATTTTTAA+TGG + tig0020262:91000-91019 Msa1379090:intergenic 25.0%
! GACCATTATGGAAATATAAA+TGG - tig0020262:91460-91479 Msa1379090:CDS 25.0%
! TTAGTTAGTATCCAAATTGT+AGG + tig0020262:91722-91741 Msa1379090:intergenic 25.0%
! ACCCCTAAAAAAAGAATTTA+GGG - tig0020262:91804-91823 Msa1379090:five_prime_UTR 25.0%
!! CAATGATTGATCAAATTTTC+AGG - tig0020262:91989-92008 Msa1379090:five_prime_UTR 25.0%
! AACATGTCAAAACATTCTTT+AGG + tig0020262:92044-92063 Msa1379090:intergenic 25.0%
!!! AATGTTTTGACATGTTTAGT+AGG - tig0020262:92048-92067 Msa1379090:five_prime_UTR 25.0%
!!! CAAGTTTTGTGCATTATATA+AGG - tig0020262:92374-92393 Msa1379090:five_prime_UTR 25.0%
! TACACCAATGAATAAAATTC+AGG - tig0020262:92497-92516 Msa1379090:five_prime_UTR 25.0%
!!! CAGGTTTTATTTTATCATAC+AGG - tig0020262:92516-92535 Msa1379090:five_prime_UTR 25.0%
GAGCTGACATAACAAATAAA+TGG - tig0020262:86286-86305 Msa1379090:three_prime_UTR 30.0%
AGCATTCATAATTTCCTCTT+TGG - tig0020262:86317-86336 Msa1379090:three_prime_UTR 30.0%
! TCATAATTTCCTCTTTGGAA+TGG - tig0020262:86322-86341 Msa1379090:three_prime_UTR 30.0%
! ATGTTTGTTGATAAGGTATG+TGG - tig0020262:86545-86564 Msa1379090:three_prime_UTR 30.0%
! TGTTTGTTGATAAGGTATGT+GGG - tig0020262:86546-86565 Msa1379090:three_prime_UTR 30.0%
ATCATAATTGGGTGAAGAAA+CGG + tig0020262:86746-86765 Msa1379090:intergenic 30.0%
TTCTTCACCCAATTATGATA+AGG - tig0020262:86747-86766 Msa1379090:intron 30.0%
TCTTCACCCAATTATGATAA+GGG - tig0020262:86748-86767 Msa1379090:intron 30.0%
ACAACAAGGGACAATAATAT+AGG + tig0020262:87029-87048 Msa1379090:intergenic 30.0%
TGAGTGACATAACAAATGAA+TGG - tig0020262:87082-87101 Msa1379090:intron 30.0%
AGATTTCATGATTTCCTCTT+TGG - tig0020262:87113-87132 Msa1379090:intron 30.0%
TCTATAGTAAAGTTTCTTCC+TGG - tig0020262:87203-87222 Msa1379090:intron 30.0%
!! GTTTTAAGTACAAAAGGAAG+GGG + tig0020262:87239-87258 Msa1379090:intergenic 30.0%
!!! GGTTTTAAGTACAAAAGGAA+GGG + tig0020262:87240-87259 Msa1379090:intergenic 30.0%
! CTTCCTTTTGTACTTAAAAC+CGG - tig0020262:87239-87258 Msa1379090:intron 30.0%
! TTCCTTTTGTACTTAAAACC+GGG - tig0020262:87240-87259 Msa1379090:intron 30.0%
ATTAATTAGGTATGTTGGAG+TGG - tig0020262:87351-87370 Msa1379090:CDS 30.0%
TTAATTAGGTATGTTGGAGT+GGG - tig0020262:87352-87371 Msa1379090:CDS 30.0%
! ACTTATAATTTAGGATGGAG+CGG - tig0020262:87665-87684 Msa1379090:intron 30.0%
ATAACAGTTTACTATTCTGC+AGG + tig0020262:87932-87951 Msa1379090:intergenic 30.0%
! AACCCAGAAACTCAATATTT+TGG - tig0020262:88105-88124 Msa1379090:CDS 30.0%
CATCCAAAATATTGAGTTTC+TGG + tig0020262:88111-88130 Msa1379090:intergenic 30.0%
!! GAAACTCAATATTTTGGATG+AGG - tig0020262:88111-88130 Msa1379090:CDS 30.0%
TATAAATGTATGCTATGTGC+AGG - tig0020262:88175-88194 Msa1379090:intron 30.0%
TTTGTAAAAGATGAGCTCTA+TGG + tig0020262:88491-88510 Msa1379090:intergenic 30.0%
!!! AGCTAGTAAATTTTTTGCGA+GGG + tig0020262:88683-88702 Msa1379090:intergenic 30.0%
!!! AAGCTAGTAAATTTTTTGCG+AGG + tig0020262:88684-88703 Msa1379090:intergenic 30.0%
TCAGTTGAGAAATATATGCA+AGG - tig0020262:88788-88807 Msa1379090:intron 30.0%
AAAATAAGCTAACTGTGACT+TGG + tig0020262:88835-88854 Msa1379090:intergenic 30.0%
! CGTCAATTATGTTAGTTTCT+AGG - tig0020262:89056-89075 Msa1379090:CDS 30.0%
ATTCTTAAGCCCTATATAGT+TGG - tig0020262:89085-89104 Msa1379090:intron 30.0%
GAAATCTTCACCAACTATAT+AGG + tig0020262:89098-89117 Msa1379090:intergenic 30.0%
! AATTGAAGCGTTAATGTTAC+AGG - tig0020262:89221-89240 Msa1379090:CDS 30.0%
CAAATATAATACTACTCACC+TGG + tig0020262:89386-89405 Msa1379090:intergenic 30.0%
! AATTTTCGTTATTTGGCTGA+CGG + tig0020262:89576-89595 Msa1379090:intergenic 30.0%
TCAAATGAAGTTTACATTGC+TGG - tig0020262:89646-89665 Msa1379090:intron 30.0%
!!! GCAATTTTTTGAACAATGAC+AGG + tig0020262:89697-89716 Msa1379090:intergenic 30.0%
ATTGTTCAAAAAATTGCACG+AGG - tig0020262:89700-89719 Msa1379090:intron 30.0%
! TTTTCATTTCCTGCAAACAA+GGG + tig0020262:89823-89842 Msa1379090:intergenic 30.0%
! TTTTTCATTTCCTGCAAACA+AGG + tig0020262:89824-89843 Msa1379090:intergenic 30.0%
TTGTTTGCAGGAAATGAAAA+AGG - tig0020262:89823-89842 Msa1379090:intron 30.0%
TGTTTGCAGGAAATGAAAAA+GGG - tig0020262:89824-89843 Msa1379090:intron 30.0%
AATTTGCAGAACTAGTTGAA+AGG + tig0020262:89916-89935 Msa1379090:intergenic 30.0%
! TTTCTTTAGGGATACTTGTT+GGG - tig0020262:90158-90177 Msa1379090:intron 30.0%
GAATGCTGTAACAAATAGAA+AGG - tig0020262:90181-90200 Msa1379090:intron 30.0%
GTATAGCTATGTATGTATGT+AGG + tig0020262:90313-90332 Msa1379090:intergenic 30.0%
TCGCTGCAAAAAAATTGTAA+AGG - tig0020262:90381-90400 Msa1379090:intron 30.0%
AGATATCAGTTCATTTGATG+AGG - tig0020262:90446-90465 Msa1379090:intron 30.0%
CTGTGGAAAAAAGAAAAGAT+TGG + tig0020262:90549-90568 Msa1379090:intergenic 30.0%
! CAATCTTTTCTTTTTTCCAC+AGG - tig0020262:90547-90566 Msa1379090:intron 30.0%
ATGATACTGAAAATTCTCCA+AGG - tig0020262:90624-90643 Msa1379090:intron 30.0%
! TTTTTCATTAGAGATCTCCT+TGG + tig0020262:90644-90663 Msa1379090:intergenic 30.0%
! AATATGTATAACTCTAAGGG+TGG + tig0020262:90816-90835 Msa1379090:intergenic 30.0%
! CATATTTCCTTATGGGTTAT+TGG - tig0020262:90830-90849 Msa1379090:intron 30.0%
TTTGCGAACATTATCATCAT+TGG + tig0020262:90857-90876 Msa1379090:intergenic 30.0%
TATACTTTGATAGACAACAC+GGG + tig0020262:90938-90957 Msa1379090:intergenic 30.0%
GTATACTTTGATAGACAACA+CGG + tig0020262:90939-90958 Msa1379090:intergenic 30.0%
GCAGTTATAACATAAGAACT+TGG - tig0020262:91051-91070 Msa1379090:intron 30.0%
CTCTGATATACCTTATAAGT+TGG - tig0020262:91109-91128 Msa1379090:intron 30.0%
TTAGGGATATCCAACTTATA+AGG + tig0020262:91122-91141 Msa1379090:intergenic 30.0%
CATGATAATCATAGCTGTTA+GGG + tig0020262:91139-91158 Msa1379090:intergenic 30.0%
ACATGATAATCATAGCTGTT+AGG + tig0020262:91140-91159 Msa1379090:intergenic 30.0%
CATGTAAATCTCAGTAGAAA+AGG - tig0020262:91155-91174 Msa1379090:intron 30.0%
!! ACTATTCCATTGTTGATGAT+TGG - tig0020262:91356-91375 Msa1379090:intron 30.0%
GGCCATTTATATTTCCATAA+TGG + tig0020262:91465-91484 Msa1379090:intergenic 30.0%
ATATGAATTGTTCATTCACC+CGG - tig0020262:91588-91607 Msa1379090:exon 30.0%
CATTAAGCACTCTTTGATTA+TGG - tig0020262:91628-91647 Msa1379090:five_prime_UTR 30.0%
TGATTATGGTTCAACAAATG+TGG - tig0020262:91642-91661 Msa1379090:five_prime_UTR 30.0%
!!! TCTTTTTTTAGGGGTCTATT+AGG + tig0020262:91799-91818 Msa1379090:intergenic 30.0%
GACCCCTAAAAAAAGAATTT+AGG - tig0020262:91803-91822 Msa1379090:five_prime_UTR 30.0%
!!! GCCCTAAATTCTTTTTTTAG+GGG + tig0020262:91808-91827 Msa1379090:intergenic 30.0%
!!! GGCCCTAAATTCTTTTTTTA+GGG + tig0020262:91809-91828 Msa1379090:intergenic 30.0%
TTCATAAGCTATCTTAGCAA+GGG + tig0020262:91887-91906 Msa1379090:intergenic 30.0%
TTTCATAAGCTATCTTAGCA+AGG + tig0020262:91888-91907 Msa1379090:intergenic 30.0%
AATAACATAAACAGAACAGC+AGG - tig0020262:92096-92115 Msa1379090:five_prime_UTR 30.0%
ATAACATAAACAGAACAGCA+GGG - tig0020262:92097-92116 Msa1379090:five_prime_UTR 30.0%
TCACTTTACACTTGAAACAT+TGG + tig0020262:92126-92145 Msa1379090:intergenic 30.0%
! TTTCAAGTGTAAAGTGAAAC+TGG - tig0020262:92129-92148 Msa1379090:intron 30.0%
! TGCCATAATTTTTCCAAATC+GGG + tig0020262:92201-92220 Msa1379090:intergenic 30.0%
! GTGCCATAATTTTTCCAAAT+CGG + tig0020262:92202-92221 Msa1379090:intergenic 30.0%
! GAAAAATTATGGCACGATTT+TGG - tig0020262:92207-92226 Msa1379090:intron 30.0%
!!! ACGATTTTGGTTCAGTTTTT+TGG - tig0020262:92220-92239 Msa1379090:intron 30.0%
!!! CAGTTTTTTGGAGTTATTCT+CGG - tig0020262:92232-92251 Msa1379090:intron 30.0%
! GAAATTGTGGTAAGATTTTG+TGG - tig0020262:92278-92297 Msa1379090:five_prime_UTR 30.0%
TTTGTACTAATGTGAAATCG+TGG - tig0020262:92319-92338 Msa1379090:five_prime_UTR 30.0%
GAGAAACTTAGGTAACTTTA+AGG - tig0020262:92431-92450 Msa1379090:intron 30.0%
TTTAGTGAAGTTCTCTTGAA+AGG - tig0020262:92463-92482 Msa1379090:five_prime_UTR 30.0%
ACAACAAAGGCCAACAATAT+AGG + tig0020262:86217-86236 Msa1379090:intergenic 35.0%
GTTTCAAGCATAAAAGGAAG+GGG + tig0020262:86437-86456 Msa1379090:intergenic 35.0%
GGTTTCAAGCATAAAAGGAA+GGG + tig0020262:86438-86457 Msa1379090:intergenic 35.0%
! CTTCCTTTTATGCTTGAAAC+CGG - tig0020262:86437-86456 Msa1379090:three_prime_UTR 35.0%
! TTCCTTTTATGCTTGAAACC+GGG - tig0020262:86438-86457 Msa1379090:three_prime_UTR 35.0%
AGCTAAGTGTATAACTAACC+CGG + tig0020262:86459-86478 Msa1379090:intergenic 35.0%
TGAATCTGAGAACAATCCAA+AGG - tig0020262:86611-86630 Msa1379090:CDS 35.0%
GCATTGCCCTTATCATAATT+GGG + tig0020262:86757-86776 Msa1379090:intergenic 35.0%
AGCATTGCCCTTATCATAAT+TGG + tig0020262:86758-86777 Msa1379090:intergenic 35.0%
ATATAGGCAATGGACGAAAT+GGG + tig0020262:87013-87032 Msa1379090:intergenic 35.0%
AATATAGGCAATGGACGAAA+TGG + tig0020262:87014-87033 Msa1379090:intergenic 35.0%
AGGGACAATAATATAGGCAA+TGG + tig0020262:87023-87042 Msa1379090:intergenic 35.0%
GACATAGTAGCATACAACAA+GGG + tig0020262:87042-87061 Msa1379090:intergenic 35.0%
AGACATAGTAGCATACAACA+AGG + tig0020262:87043-87062 Msa1379090:intergenic 35.0%
TATGTCTTCCAACACTCTAA+GGG - tig0020262:87056-87075 Msa1379090:intron 35.0%
! TCATGATTTCCTCTTTGGAA+AGG - tig0020262:87118-87137 Msa1379090:intron 35.0%
!!! CGGTTTTAAGTACAAAAGGA+AGG + tig0020262:87241-87260 Msa1379090:intergenic 35.0%
ACTACTTCATTGAATCAGAG+AGG - tig0020262:87401-87420 Msa1379090:intron 35.0%
! CTTATAATTTAGGATGGAGC+GGG - tig0020262:87666-87685 Msa1379090:intron 35.0%
!! AAATTGCGTTGATTTGAAGC+TGG - tig0020262:87865-87884 Msa1379090:intron 35.0%
AACAAACACGAAACCATGAA+CGG - tig0020262:87900-87919 Msa1379090:intron 35.0%
GTAAACTGTTATCTAACCTG+AGG - tig0020262:87940-87959 Msa1379090:intron 35.0%
TCCCCGTTATGAATCATAAT+CGG - tig0020262:88036-88055 Msa1379090:CDS 35.0%
TCCGATTATGATTCATAACG+GGG + tig0020262:88040-88059 Msa1379090:intergenic 35.0%
CTCCGATTATGATTCATAAC+GGG + tig0020262:88041-88060 Msa1379090:intergenic 35.0%
CCTCCGATTATGATTCATAA+CGG + tig0020262:88042-88061 Msa1379090:intergenic 35.0%
! GCTACTCCAAACAATTTTGT+TGG - tig0020262:88413-88432 Msa1379090:intron 35.0%
!!! CTAGTAAATTTTTTGCGAGG+GGG + tig0020262:88681-88700 Msa1379090:intergenic 35.0%
!!! GCTAGTAAATTTTTTGCGAG+GGG + tig0020262:88682-88701 Msa1379090:intergenic 35.0%
!!! TAATCATGTGGCTAGTTTTG+TGG + tig0020262:88759-88778 Msa1379090:intergenic 35.0%
!! AGCAATATTTTGGAGAGACT+TGG - tig0020262:88876-88895 Msa1379090:intron 35.0%
AGGTCCTCTTGAGTTAAAAA+AGG - tig0020262:89241-89260 Msa1379090:CDS 35.0%
TCCTCTTGAGTTAAAAAAGG+AGG - tig0020262:89244-89263 Msa1379090:CDS 35.0%
!!! TCCTCCTTTTTTAACTCAAG+AGG + tig0020262:89248-89267 Msa1379090:intergenic 35.0%
TGTTGCCTCAAAATCAGATT+AGG + tig0020262:89287-89306 Msa1379090:intergenic 35.0%
!!! TGATTTTGAGGCAACATTCA+TGG - tig0020262:89291-89310 Msa1379090:CDS 35.0%
! TTTTGAACAATGACAGGAAC+AGG + tig0020262:89691-89710 Msa1379090:intergenic 35.0%
GTTTGCAGGAAATGAAAAAG+GGG - tig0020262:89825-89844 Msa1379090:intron 35.0%
!! GATACTTTAAGATGTTGACC+TGG + tig0020262:89870-89889 Msa1379090:intergenic 35.0%
AAGTATCACTCTCTCATGTT+AGG - tig0020262:89883-89902 Msa1379090:intron 35.0%
GTCGATGCTTTATAGTCTAT+AGG + tig0020262:90003-90022 Msa1379090:intergenic 35.0%
! CTTTCTTTAGGGATACTTGT+TGG - tig0020262:90157-90176 Msa1379090:intron 35.0%
! TTCTTTAGGGATACTTGTTG+GGG - tig0020262:90159-90178 Msa1379090:intron 35.0%
! TATGTTATCCCTTTTGCTCA+TGG - tig0020262:90212-90231 Msa1379090:intron 35.0%
ACAAAGTAGCAGATATCAGT+TGG + tig0020262:90359-90378 Msa1379090:intergenic 35.0%
ATTACTCGACAGCTTAAAAG+TGG + tig0020262:90704-90723 Msa1379090:intergenic 35.0%
ATACTTTGATAGACAACACG+GGG + tig0020262:90937-90956 Msa1379090:intergenic 35.0%
TAACATAAGAACTTGGTTGC+AGG - tig0020262:91058-91077 Msa1379090:intron 35.0%
AACATAAGAACTTGGTTGCA+GGG - tig0020262:91059-91078 Msa1379090:intron 35.0%
GCATTCGTTCACTAATTTAC+AGG - tig0020262:91177-91196 Msa1379090:intron 35.0%
TGACATGATAGTTCCATTCT+TGG - tig0020262:91306-91325 Msa1379090:CDS 35.0%
ATACAAATGACCAAGTTGCA+GGG - tig0020262:91389-91408 Msa1379090:intron 35.0%
! ATTTTGAATACCCTGCAACT+TGG + tig0020262:91402-91421 Msa1379090:intergenic 35.0%
!! TGGTTCATTCTCTAAGATAC+AGG - tig0020262:91662-91681 Msa1379090:five_prime_UTR 35.0%
!! GGTTCATTCTCTAAGATACA+GGG - tig0020262:91663-91682 Msa1379090:five_prime_UTR 35.0%
!!! GGGCCCTAAATTCTTTTTTT+AGG + tig0020262:91810-91829 Msa1379090:intergenic 35.0%
!!! ATACTTATTTTTTGGGGCCT+AGG - tig0020262:91837-91856 Msa1379090:five_prime_UTR 35.0%
!!! TACTTATTTTTTGGGGCCTA+GGG - tig0020262:91838-91857 Msa1379090:five_prime_UTR 35.0%
!! GATTGATCAAATTTTCAGGG+TGG - tig0020262:91993-92012 Msa1379090:five_prime_UTR 35.0%
TGTCAAAACATTCTTTAGGC+CGG + tig0020262:92040-92059 Msa1379090:intergenic 35.0%
!! GTTTTGACATGTTTAGTAGG+TGG - tig0020262:92051-92070 Msa1379090:five_prime_UTR 35.0%
!! GTCCCGATTTGGAAAAATTA+TGG - tig0020262:92196-92215 Msa1379090:intron 35.0%
GTTATTCTCGGCAAAAATTG+TGG - tig0020262:92244-92263 Msa1379090:five_prime_UTR 35.0%
TGTGAGCTTGTGCAATCTAA+CGG - tig0020262:86152-86171 Msa1379090:three_prime_UTR 40.0%
AGGCCAACAATATAGGCAAT+GGG + tig0020262:86210-86229 Msa1379090:intergenic 40.0%
AAGGCCAACAATATAGGCAA+TGG + tig0020262:86211-86230 Msa1379090:intergenic 40.0%
GAAAAGGAACCATTCCAAAG+AGG + tig0020262:86334-86353 Msa1379090:intergenic 40.0%
! TGGTTTCGTGTTGCTAAATG+TGG - tig0020262:86377-86396 Msa1379090:three_prime_UTR 40.0%
CGGTTTCAAGCATAAAAGGA+AGG + tig0020262:86439-86458 Msa1379090:intergenic 40.0%
AACCCGGTTTCAAGCATAAA+AGG + tig0020262:86443-86462 Msa1379090:intergenic 40.0%
!! CACTTAGCTCTATAGTTCCA+TGG - tig0020262:86470-86489 Msa1379090:three_prime_UTR 40.0%
TTGATAAGGTATGTGGGAGT+GGG - tig0020262:86552-86571 Msa1379090:three_prime_UTR 40.0%
ATCTGAGAACAATCCAAAGG+AGG - tig0020262:86614-86633 Msa1379090:CDS 40.0%
GGCAAATAGTGCATTGTGAT+TGG + tig0020262:86829-86848 Msa1379090:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - tig0020262:86837-86856 Msa1379090:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - tig0020262:86840-86859 Msa1379090:intron 40.0%
CTATGTCTTCCAACACTCTA+AGG - tig0020262:87055-87074 Msa1379090:intron 40.0%
GAAAAGGAACCTTTCCAAAG+AGG + tig0020262:87130-87149 Msa1379090:intergenic 40.0%
!! TGCTTTCAAGTTGCAACATG+TGG - tig0020262:87179-87198 Msa1379090:intron 40.0%
AAGTTTCTTCCTGGATTCCA+AGG - tig0020262:87212-87231 Msa1379090:intron 40.0%
!!! GACCCGGTTTTAAGTACAAA+AGG + tig0020262:87245-87264 Msa1379090:intergenic 40.0%
AGAGCTAAGTAAAACTGACC+CGG + tig0020262:87261-87280 Msa1379090:intergenic 40.0%
TGAATCAGAGAGGAATCCAA+AGG - tig0020262:87411-87430 Msa1379090:intron 40.0%
AGTATGAGAGGATCATCCTT+TGG + tig0020262:87430-87449 Msa1379090:intergenic 40.0%
AGGATGATCCTCTCATACTA+TGG - tig0020262:87431-87450 Msa1379090:intron 40.0%
!! TCTGGCCTTATGCTTGAAAT+TGG - tig0020262:87484-87503 Msa1379090:intron 40.0%
AAGAACTGTTGTATCCTAGG+AGG + tig0020262:88017-88036 Msa1379090:intergenic 40.0%
CCGTTATGAATCATAATCGG+AGG - tig0020262:88039-88058 Msa1379090:CDS 40.0%
TATTAACCACCCGTTAATGC+AGG - tig0020262:88280-88299 Msa1379090:CDS 40.0%
ATTAACCACCCGTTAATGCA+GGG - tig0020262:88281-88300 Msa1379090:CDS 40.0%
GACTTTGTCCATTAACGCAA+CGG + tig0020262:88709-88728 Msa1379090:intergenic 40.0%
! GCGTTAATGGACAAAGTCAA+AGG - tig0020262:88711-88730 Msa1379090:intron 40.0%
!!! GGCTAGTTTTGTGGAATATG+TGG + tig0020262:88750-88769 Msa1379090:intergenic 40.0%
CAACATTCATGGACAAAGGT+GGG - tig0020262:89302-89321 Msa1379090:intron 40.0%
AACATTCATGGACAAAGGTG+GGG - tig0020262:89303-89322 Msa1379090:intron 40.0%
ACTTATGCCACAACAGAATC+TGG - tig0020262:89432-89451 Msa1379090:CDS 40.0%
TTTAGCACCAGATTCTGTTG+TGG + tig0020262:89442-89461 Msa1379090:intergenic 40.0%
! TCACAATTTCCCTTGTTTGC+AGG - tig0020262:89811-89830 Msa1379090:intron 40.0%
TTGACCTGGAGATTTATCCA+TGG + tig0020262:89856-89875 Msa1379090:intergenic 40.0%
! TATCCCTTTTGCTCATGGAA+TGG - tig0020262:90217-90236 Msa1379090:intron 40.0%
! ATCCCTTTTGCTCATGGAAT+GGG - tig0020262:90218-90237 Msa1379090:intron 40.0%
! GATATCAGTTGGTGCTTCAT+AGG + tig0020262:90348-90367 Msa1379090:intergenic 40.0%
!!! TTTTTTCCACAGGTCACATC+AGG - tig0020262:90557-90576 Msa1379090:intron 40.0%
TTAATTCCTGATGTGACCTG+TGG + tig0020262:90566-90585 Msa1379090:intergenic 40.0%
TTTGTGCTGAGGAAATTGGT+GGG + tig0020262:90671-90690 Msa1379090:intergenic 40.0%
ATTTGTGCTGAGGAAATTGG+TGG + tig0020262:90672-90691 Msa1379090:intergenic 40.0%
GAGATTTGTGCTGAGGAAAT+TGG + tig0020262:90675-90694 Msa1379090:intergenic 40.0%
! GCAATTTGAGATTTGTGCTG+AGG + tig0020262:90682-90701 Msa1379090:intergenic 40.0%
! GTATAACTCTAAGGGTGGAA+AGG + tig0020262:90811-90830 Msa1379090:intergenic 40.0%
CTTGCAATCTCGTACAAATG+TGG + tig0020262:91014-91033 Msa1379090:intergenic 40.0%
CACATTTGTACGAGATTGCA+AGG - tig0020262:91012-91031 Msa1379090:intron 40.0%
CTGTCTCCAATCATCAACAA+TGG + tig0020262:91365-91384 Msa1379090:intergenic 40.0%
!! TTGTTGATGATTGGAGACAG+TGG - tig0020262:91365-91384 Msa1379090:intron 40.0%
CATACAAATGACCAAGTTGC+AGG - tig0020262:91388-91407 Msa1379090:intron 40.0%
TGTGCAAGTGTAGATACACA+AGG - tig0020262:91512-91531 Msa1379090:CDS 40.0%
! GATGACTTTTGCAACTGTGA+AGG - tig0020262:91549-91568 Msa1379090:CDS 40.0%
AAATTGTAGGTTCGCCCTTA+GGG + tig0020262:91709-91728 Msa1379090:intergenic 40.0%
CTATCTTAGCAAGGGAAGTA+GGG + tig0020262:91879-91898 Msa1379090:intergenic 40.0%
!! TGATCAAATTTTCAGGGTGG+AGG - tig0020262:91996-92015 Msa1379090:five_prime_UTR 40.0%
GCAAAAATTGTGTCCCGATT+TGG - tig0020262:92185-92204 Msa1379090:intron 40.0%
GCAAAAATTGTGGCAAGAAC+AGG - tig0020262:92254-92273 Msa1379090:five_prime_UTR 40.0%
! AGGCTTCATTCTCTACGTTT+TGG - tig0020262:92394-92413 Msa1379090:five_prime_UTR 40.0%
! GGCTTCATTCTCTACGTTTT+GGG - tig0020262:92395-92414 Msa1379090:five_prime_UTR 40.0%
GCTTCAAGAGAGAGAAACTT+AGG - tig0020262:92420-92439 Msa1379090:intron 40.0%
GTTCTCTTGAAAGGTTCTCT+TGG - tig0020262:92472-92491 Msa1379090:five_prime_UTR 40.0%
TCGCCCATTGCCTATATTGT+TGG - tig0020262:86204-86223 Msa1379090:three_prime_UTR 45.0%
TCCATAGTGCAGTTTCTTCC+TGG - tig0020262:86401-86420 Msa1379090:three_prime_UTR 45.0%
TCCAGGAAGAAACTGCACTA+TGG + tig0020262:86405-86424 Msa1379090:intergenic 45.0%
CAGTTTCTTCCTGGATTCCA+AGG - tig0020262:86410-86429 Msa1379090:three_prime_UTR 45.0%
! GTTGATAAGGTATGTGGGAG+TGG - tig0020262:86551-86570 Msa1379090:three_prime_UTR 45.0%
AGAATGAGAGGATCCTCCTT+TGG + tig0020262:86630-86649 Msa1379090:intergenic 45.0%
AGGAGGATCCTCTCATTCTA+TGG - tig0020262:86631-86650 Msa1379090:CDS 45.0%
CCAGTTAGCCATAGAATGAG+AGG + tig0020262:86642-86661 Msa1379090:intergenic 45.0%
CCTCTCATTCTATGGCTAAC+TGG - tig0020262:86639-86658 Msa1379090:CDS 45.0%
CTCATTCTATGGCTAACTGG+TGG - tig0020262:86642-86661 Msa1379090:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - tig0020262:86857-86876 Msa1379090:intron 45.0%
CCAGTTAGCCATAGTATGAG+AGG + tig0020262:87442-87461 Msa1379090:intergenic 45.0%
CCTCTCATACTATGGCTAAC+TGG - tig0020262:87439-87458 Msa1379090:intron 45.0%
CTCATACTATGGCTAACTGG+TGG - tig0020262:87442-87461 Msa1379090:intron 45.0%
TGACATAGTCACTGTCCTTG+AGG - tig0020262:87965-87984 Msa1379090:intron 45.0%
TGAGGCGGATAAAATCCTCA+AGG + tig0020262:87983-88002 Msa1379090:intergenic 45.0%
TAGGAGGATATGCGCTTATG+AGG + tig0020262:88001-88020 Msa1379090:intergenic 45.0%
TCATAAGCGCATATCCTCCT+AGG - tig0020262:88000-88019 Msa1379090:CDS 45.0%
GGGAAGAACTGTTGTATCCT+AGG + tig0020262:88020-88039 Msa1379090:intergenic 45.0%
TTAACCACCCGTTAATGCAG+GGG - tig0020262:88282-88301 Msa1379090:CDS 45.0%
! GCCTGCCTAATCTGATTTTG+AGG - tig0020262:89279-89298 Msa1379090:CDS 45.0%
GCCTCAAAATCAGATTAGGC+AGG + tig0020262:89283-89302 Msa1379090:intergenic 45.0%
GAGGCAACATTCATGGACAA+AGG - tig0020262:89298-89317 Msa1379090:intron 45.0%
GCAACATTCATGGACAAAGG+TGG - tig0020262:89301-89320 Msa1379090:intron 45.0%
ACATTCATGGACAAAGGTGG+GGG - tig0020262:89304-89323 Msa1379090:intron 45.0%
TAAGTGAAGCCTGTGGAAAC+CGG + tig0020262:89417-89436 Msa1379090:intergenic 45.0%
ATTGCTGGTGATTCGTACTC+TGG - tig0020262:89661-89680 Msa1379090:intron 45.0%
ATGAAAAAGGGGTCCAACCA+TGG - tig0020262:89836-89855 Msa1379090:intron 45.0%
CCTGGAGATTTATCCATGGT+TGG + tig0020262:89852-89871 Msa1379090:intergenic 45.0%
CCAACCATGGATAAATCTCC+AGG - tig0020262:89849-89868 Msa1379090:intron 45.0%
GTCCCATTCCATGAGCAAAA+GGG + tig0020262:90223-90242 Msa1379090:intergenic 45.0%
AGTCCCATTCCATGAGCAAA+AGG + tig0020262:90224-90243 Msa1379090:intergenic 45.0%
! TTTTAGACCCGAGTTGTGAG+TGG - tig0020262:90597-90616 Msa1379090:intron 45.0%
TCATCAAGCCACTCACAACT+CGG + tig0020262:90608-90627 Msa1379090:intergenic 45.0%
CATTGGCCCAATAACCCATA+AGG + tig0020262:90840-90859 Msa1379090:intergenic 45.0%
! CAAAGCGCTACACATACAGA+AGG - tig0020262:90873-90892 Msa1379090:intron 45.0%
CATGCTTGTGTTGCCAAGAA+TGG + tig0020262:91322-91341 Msa1379090:intergenic 45.0%
CATTCTTGGCAACACAAGCA+TGG - tig0020262:91320-91339 Msa1379090:CDS 45.0%
GGGCTCCAAAATCTCAGAAA+CGG + tig0020262:91689-91708 Msa1379090:intergenic 45.0%
!!! TCTGAGATTTTGGAGCCCTA+AGG - tig0020262:91691-91710 Msa1379090:five_prime_UTR 45.0%
!!! CTGAGATTTTGGAGCCCTAA+GGG - tig0020262:91692-91711 Msa1379090:five_prime_UTR 45.0%
CAAATTGTAGGTTCGCCCTT+AGG + tig0020262:91710-91729 Msa1379090:intergenic 45.0%
CTAAGGGCGAACCTACAATT+TGG - tig0020262:91708-91727 Msa1379090:five_prime_UTR 45.0%
GCTATCTTAGCAAGGGAAGT+AGG + tig0020262:91880-91899 Msa1379090:intergenic 45.0%
CATTCTTTAGGCCGGTATTC+CGG + tig0020262:92032-92051 Msa1379090:intergenic 45.0%
GGCAAGAACAGGAGAAATTG+TGG - tig0020262:92265-92284 Msa1379090:five_prime_UTR 45.0%
AATGTGAAATCGTGGCACGA+TGG - tig0020262:92327-92346 Msa1379090:five_prime_UTR 45.0%
ATGTGAAATCGTGGCACGAT+GGG - tig0020262:92328-92347 Msa1379090:five_prime_UTR 45.0%
! GGCACGATGGGTTTAAATTG+AGG - tig0020262:92340-92359 Msa1379090:five_prime_UTR 45.0%
!! ATAAATTAATATTAACATAA+CGG + tig0020262:89758-89777 Msa1379090:intergenic 5.0%
GCATAAAAGGAAGGGGTCCT+TGG + tig0020262:86430-86449 Msa1379090:intergenic 50.0%
TGCCACAATTCAAGGAGGTG+TGG - tig0020262:86845-86864 Msa1379090:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG + tig0020262:86850-86869 Msa1379090:intergenic 50.0%
ACTCAGCTCCCTTAGAGTGT+TGG + tig0020262:87067-87086 Msa1379090:intergenic 50.0%
GTACAAAAGGAAGGGGTCCT+TGG + tig0020262:87232-87251 Msa1379090:intergenic 50.0%
TGTTGGAGTGGGTGAACAAG+AGG - tig0020262:87363-87382 Msa1379090:CDS 50.0%
CTGCAGGTTATTGCCGTTCA+TGG + tig0020262:87916-87935 Msa1379090:intergenic 50.0%
GAGGATATGCGCTTATGAGG+CGG + tig0020262:87998-88017 Msa1379090:intergenic 50.0%
TCAAAGGGATGGGGTAGCAT+TGG - tig0020262:88314-88333 Msa1379090:intron 50.0%
TAGCTTCGCCGTTGCGTTAA+TGG - tig0020262:88698-88717 Msa1379090:intron 50.0%
!! GTAGATTTGCCGGTTTCCAC+AGG - tig0020262:89405-89424 Msa1379090:CDS 50.0%
TGTGGCATAAGTGAAGCCTG+TGG + tig0020262:89424-89443 Msa1379090:intergenic 50.0%
CATCAAGCCACTCACAACTC+GGG + tig0020262:90607-90626 Msa1379090:intergenic 50.0%
!! TGCAGGGAAGTGTTGCGAAA+TGG - tig0020262:91075-91094 Msa1379090:intron 50.0%
!!! CAGGGCCGTTTCTGAGATTT+TGG - tig0020262:91681-91700 Msa1379090:five_prime_UTR 50.0%
TGTGGGAGTGGGAGAGAAAG+AGG - tig0020262:86563-86582 Msa1379090:three_prime_UTR 55.0%
! CTATGGCTAACTGGTGGACC+TGG - tig0020262:86648-86667 Msa1379090:CDS 55.0%
CCAGACAAAGCAGAGCAACC+AGG + tig0020262:87469-87488 Msa1379090:intergenic 55.0%
CCTGGTTGCTCTGCTTTGTC+TGG - tig0020262:87466-87485 Msa1379090:intron 55.0%
CAGTGACTATGTCACGCCTC+AGG + tig0020262:87959-87978 Msa1379090:intergenic 55.0%
GCGAAGGGCTTCAAAGGGAT+GGG - tig0020262:88304-88323 Msa1379090:intron 55.0%
CGAAGGGCTTCAAAGGGATG+GGG - tig0020262:88305-88324 Msa1379090:intron 55.0%
CAAGGGAAGTAGGGCGAAGA+GGG + tig0020262:91870-91889 Msa1379090:intergenic 55.0%
GACACACAGCTCCGGAATAC+CGG - tig0020262:92018-92037 Msa1379090:five_prime_UTR 55.0%
GGAAGGGGTCCTTGGAATCC+AGG + tig0020262:86422-86441 Msa1379090:intergenic 60.0%
GGAAGGGGTCCTTGGAATCC+AGG + tig0020262:86422-86441 Msa1379090:intergenic 60.0%
TTCGCCCCTGCATTAACGGG+TGG + tig0020262:88289-88308 Msa1379090:intergenic 60.0%
ACCCGTTAATGCAGGGGCGA+AGG - tig0020262:88288-88307 Msa1379090:CDS 60.0%
CCCTTCGCCCCTGCATTAAC+GGG + tig0020262:88292-88311 Msa1379090:intergenic 60.0%
CCCGTTAATGCAGGGGCGAA+GGG - tig0020262:88289-88308 Msa1379090:CDS 60.0%
GCCCTTCGCCCCTGCATTAA+CGG + tig0020262:88293-88312 Msa1379090:intergenic 60.0%
CAGGGGCGAAGGGCTTCAAA+GGG - tig0020262:88299-88318 Msa1379090:CDS 60.0%
GGCGAAGGGCTTCAAAGGGA+TGG - tig0020262:88303-88322 Msa1379090:intron 60.0%
GCAAGGGAAGTAGGGCGAAG+AGG + tig0020262:91871-91890 Msa1379090:intergenic 60.0%
GCAGGGGCGAAGGGCTTCAA+AGG - tig0020262:88298-88317 Msa1379090:CDS 65.0%
GGGTGGAGGACACACAGCTC+CGG - tig0020262:92010-92029 Msa1379090:five_prime_UTR 65.0%
GCGAAGAGGGCGACTGCCCT+AGG + tig0020262:91857-91876 Msa1379090:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020262 gene 86130 92570 86130 ID=Msa1379090;Name=Msa1379090
tig0020262 mRNA 86130 92570 86130 ID=Msa1379090-mRNA-1;Parent=Msa1379090;Name=Msa1379090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=851|1|1|1|0.86|0.81|16|476|472
tig0020262 exon 86130 86689 86130 ID=Msa1379090-mRNA-1:exon:6380;Parent=Msa1379090-mRNA-1
tig0020262 exon 87130 87175 87130 ID=Msa1379090-mRNA-1:exon:6379;Parent=Msa1379090-mRNA-1
tig0020262 exon 87290 87403 87290 ID=Msa1379090-mRNA-1:exon:6378;Parent=Msa1379090-mRNA-1
tig0020262 exon 87502 87620 87502 ID=Msa1379090-mRNA-1:exon:6377;Parent=Msa1379090-mRNA-1
tig0020262 exon 87806 87877 87806 ID=Msa1379090-mRNA-1:exon:6376;Parent=Msa1379090-mRNA-1
tig0020262 exon 87982 88131 87982 ID=Msa1379090-mRNA-1:exon:6375;Parent=Msa1379090-mRNA-1
tig0020262 exon 88233 88319 88233 ID=Msa1379090-mRNA-1:exon:6374;Parent=Msa1379090-mRNA-1
tig0020262 exon 88435 88533 88435 ID=Msa1379090-mRNA-1:exon:6373;Parent=Msa1379090-mRNA-1
tig0020262 exon 88830 88867 88830 ID=Msa1379090-mRNA-1:exon:6372;Parent=Msa1379090-mRNA-1
tig0020262 exon 88979 89081 88979 ID=Msa1379090-mRNA-1:exon:6371;Parent=Msa1379090-mRNA-1
tig0020262 exon 89191 89313 89191 ID=Msa1379090-mRNA-1:exon:6370;Parent=Msa1379090-mRNA-1
tig0020262 exon 89381 89457 89381 ID=Msa1379090-mRNA-1:exon:6369;Parent=Msa1379090-mRNA-1
tig0020262 exon 91195 91340 91195 ID=Msa1379090-mRNA-1:exon:6368;Parent=Msa1379090-mRNA-1
tig0020262 exon 91439 92140 91439 ID=Msa1379090-mRNA-1:exon:6367;Parent=Msa1379090-mRNA-1
tig0020262 exon 92241 92426 92241 ID=Msa1379090-mRNA-1:exon:6366;Parent=Msa1379090-mRNA-1
tig0020262 exon 92447 92570 92447 ID=Msa1379090-mRNA-1:exon:6365;Parent=Msa1379090-mRNA-1
tig0020262 five_prime_UTR 92447 92570 92447 ID=Msa1379090-mRNA-1:five_prime_utr;Parent=Msa1379090-mRNA-1
tig0020262 five_prime_UTR 92241 92426 92241 ID=Msa1379090-mRNA-1:five_prime_utr;Parent=Msa1379090-mRNA-1
tig0020262 five_prime_UTR 91600 92140 91600 ID=Msa1379090-mRNA-1:five_prime_utr;Parent=Msa1379090-mRNA-1
tig0020262 CDS 91439 91599 91439 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 91195 91340 91195 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 89381 89457 89381 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 89191 89313 89191 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 88979 89081 88979 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 88830 88867 88830 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 88435 88533 88435 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 88233 88319 88233 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 87982 88131 87982 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 87806 87877 87806 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 87502 87620 87502 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 87290 87403 87290 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 87130 87175 87130 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 CDS 86606 86689 86606 ID=Msa1379090-mRNA-1:cds;Parent=Msa1379090-mRNA-1
tig0020262 three_prime_UTR 86130 86605 86130 ID=Msa1379090-mRNA-1:three_prime_utr;Parent=Msa1379090-mRNA-1
Gene Sequence

>Msa1379090

ATGGCAAAGTTTAGATTTCATGATTTCCTCTTTGGAAAGGTTCCTTTTCTTCTTCTTCTTCTTTTATTATCACATATTTGCTTTCAAGTTGCAACATGTGGCTCTATAGTAAAGTTTCTTCCTGGATTCCAAGGACCCCTTCCTTTTGTACTTAAAACCGGGTATGTTGGAGTGGGTGAACAAGAGGATGTGCAAGTGTTCTACTACTTCATTGAATCAGAGAGGAATCCAAAGGATGATCCTCTCATACTATGGCTAACTGGTGGACCTGGTTGCTCTGCTTTGTCTGGCCTTATGCTTGAAATTGGTCCTCTTGAGTTAAAAAAGGAGGAATACAATGGGAGCCTGCCTAATCTGATTTTGAGGCAACATTCATGGACAAAGGTGAGTAGTATTATATTTGTAGATTTGCCGGTTTCCACAGGCTTCACTTATGCCACAACAGAATCTGGTGCTAAACGAAGCGACTCGATACTAGTTCATCAAACTTATCAATTTCTAAGAAAGTGGTTGGTTCATCATCCAAAGTTTCAATCAAATGAAGTTTACATTGCTGGTGATTCGTACTCTGGCATTCCTGTTCCTGTCATTGTTCAAAAAATTGCACGAGGAAATGAAAAAGGGGTCCAACCATGGATAAATCTCCAGGGATACTTGTTGGGGAATGCTGTAACAAATAGAAAGGAACAAAACTATGTTATCCCTTTTGCTCATGGAATGGGACTCATATCCGATGAACTATACAACTCGCTGCAAAAAAATTGTAAAGGAGACTACACAAATGTAGAGACAAGAAATGTTTTATGTTCTAGAGATATCAGTTCATTTGATGAGGTCACATCAGGAATTAATAAAGCATATATTTTAGACCCGAGTTGTGAGTGGCTTGATGATACTGAAAATTCTCCAAGGAGATCTCTAATGAAAAAATATCCCACCAATTTCCTCAGCACAAATCTCAAATTGCCACTTTTAAGCTGTCGAAGTTATACATATTTCCTTATGGGTTATTGGGCCAATGATGATAATGTTCGCAAAGCGCTACACATACAGAAGGGAAGTGTTGCGAAATGGCATCGTTGTAGCTCTGATATACCTTATAAGTTGGATATCCCTAACAGCTATGATTATCATGTAAATCTCAGTAGAAAAGGCATTCGTTCACTAATTTACAGTGGCGATCATGACATGATAGTTCCATTCTTGGCAACACAAGCATGGATAAGATCTTTAAACTATTCCATTGTTGATGATTGGAGACAGTGGCATACAAATGACCAAGTTGCAGGATACACAAGGACTTACTCAAATCAGATGACTTTTGCAACTGTGAAGGGTGGAGGACACACAGCTCCGGAATACCGGCCTAAAGAATGTTTTGACATGTTTAGTAGGTGGTTATCTAAGAAAGCTTTGTAA
Protein sequence

>Msa1379090

MAKFRFHDFLFGKVPFLLLLLLLSHICFQVATCGSIVKFLPGFQGPLPFVLKTGYVGVGEQEDVQVFYYFIESERNPKDDPLILWLTGGPGCSALSGLMLEIGPLELKKEEYNGSLPNLILRQHSWTKVSSIIFVDLPVSTGFTYATTESGAKRSDSILVHQTYQFLRKWLVHHPKFQSNEVYIAGDSYSGIPVPVIVQKIARGNEKGVQPWINLQGYLLGNAVTNRKEQNYVIPFAHGMGLISDELYNSLQKNCKGDYTNVETRNVLCSRDISSFDEVTSGINKAYILDPSCEWLDDTENSPRRSLMKKYPTNFLSTNLKLPLLSCRSYTYFLMGYWANDDNVRKALHIQKGSVAKWHRCSSDIPYKLDIPNSYDYHVNLSRKGIRSLIYSGDHDMIVPFLATQAWIRSLNYSIVDDWRQWHTNDQVAGYTRTYSNQMTFATVKGGGHTAPEYRPKECFDMFSRWLSKKAL*