AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880710 MtrunA17_Chr4g0068061 94.100 339 9 3 1 328 1 339 0.0 645
Msa0880710 MtrunA17_Chr1g0194951 53.125 224 87 4 1 210 1 220 1.50e-70 223
Msa0880710 MtrunA17_Chr7g0269831 55.072 207 80 3 1 194 1 207 4.84e-65 209
Msa0880710 MtrunA17_Chr7g0275911 71.552 116 33 0 1 116 1 116 4.05e-63 201
Msa0880710 MtrunA17_Chr8g0346561 72.414 116 32 0 1 116 1 116 5.46e-62 199
Msa0880710 MtrunA17_Chr1g0187761 73.276 116 31 0 1 116 1 116 1.81e-60 194
Msa0880710 MtrunA17_Chr4g0037141 62.069 145 49 1 1 145 1 139 4.54e-60 194
Msa0880710 MtrunA17_Chr4g0039971 71.552 116 33 0 1 116 2 117 6.80e-60 196
Msa0880710 MtrunA17_Chr4g0070611 71.552 116 33 0 1 116 1 116 7.91e-60 194
Msa0880710 MtrunA17_Chr1g0167661 70.690 116 34 0 1 116 1 116 1.12e-59 192
Msa0880710 MtrunA17_Chr4g0070641 71.552 116 33 0 1 116 1 116 2.11e-59 188
Msa0880710 MtrunA17_Chr3g0131121 61.905 147 50 1 1 141 1 147 2.92e-59 192
Msa0880710 MtrunA17_Chr1g0203411 69.828 116 35 0 1 116 1 116 6.38e-59 191
Msa0880710 MtrunA17_Chr1g0167691 44.000 250 118 6 1 246 1 232 1.29e-58 189
Msa0880710 MtrunA17_Chr7g0217741 70.690 116 34 0 1 116 1 116 1.87e-58 190
Msa0880710 MtrunA17_Chr2g0281071 70.085 117 34 1 1 116 1 117 1.25e-57 189
Msa0880710 MtrunA17_Chr3g0121241 69.643 112 34 0 5 116 35 146 1.68e-57 188
Msa0880710 MtrunA17_Chr4g0042671 69.828 116 35 0 1 116 1 116 4.07e-57 190
Msa0880710 MtrunA17_Chr8g0349261 66.116 121 39 2 1 119 1 121 4.32e-57 186
Msa0880710 MtrunA17_Chr6g0453471 68.966 116 36 0 1 116 1 116 4.68e-57 188
Msa0880710 MtrunA17_Chr3g0115821 67.241 116 38 0 1 116 1 116 6.46e-57 187
Msa0880710 MtrunA17_Chr4g0048511 70.085 117 34 1 1 116 1 117 1.04e-56 187
Msa0880710 MtrunA17_Chr7g0261281 67.241 116 38 0 1 116 1 116 1.25e-56 185
Msa0880710 MtrunA17_Chr2g0323411 68.966 116 36 0 1 116 1 116 1.35e-56 186
Msa0880710 MtrunA17_Chr7g0254411 63.281 128 47 0 1 128 1 128 1.73e-56 186
Msa0880710 MtrunA17_Chr7g0274581 64.655 116 41 0 1 116 1 116 2.20e-56 182
Msa0880710 MtrunA17_Chr4g0060721 68.103 116 37 0 1 116 2 117 2.29e-56 186
Msa0880710 MtrunA17_Chr8g0385321 68.376 117 37 0 1 117 1 117 3.91e-55 182
Msa0880710 MtrunA17_Chr5g0410961 67.241 116 38 0 1 116 1 116 1.01e-54 182
Msa0880710 MtrunA17_Chr2g0294811 86.957 92 12 0 1 92 1 92 2.04e-54 174
Msa0880710 MtrunA17_Chr3g0092401 66.379 116 39 0 1 116 2 117 2.92e-54 179
Msa0880710 MtrunA17_Chr5g0435101 67.544 114 37 0 3 116 2 115 6.06e-54 176
Msa0880710 MtrunA17_Chr3g0110351 66.379 116 39 0 1 116 1 116 1.71e-53 177
Msa0880710 MtrunA17_Chr5g0395281 65.517 116 40 0 1 116 1 116 4.69e-53 176
Msa0880710 MtrunA17_Chr7g0217221 64.655 116 41 0 1 116 1 116 9.06e-53 174
Msa0880710 MtrunA17_Chr5g0434571 65.517 116 40 0 1 116 37 152 9.07e-53 177
Msa0880710 MtrunA17_Chr4g0057031 64.655 116 41 0 1 116 1 116 3.17e-51 171
Msa0880710 MtrunA17_Chr6g0453211 65.766 111 38 0 1 111 1 111 7.16e-51 171
Msa0880710 MtrunA17_Chr3g0103281 62.931 116 43 0 1 116 1 116 9.44e-51 171
Msa0880710 MtrunA17_Chr7g0228891 64.655 116 41 0 1 116 1 116 1.18e-50 169
Msa0880710 MtrunA17_Chr4g0044421 64.348 115 40 1 3 116 2 116 1.49e-49 164
Msa0880710 MtrunA17_Chr1g0193371 65.517 116 40 0 1 116 1 116 1.83e-49 169
Msa0880710 MtrunA17_Chr2g0330041 54.815 135 55 1 1 135 1 129 3.08e-49 169
Msa0880710 MtrunA17_Chr4g0022891 65.487 113 39 0 1 113 1 113 3.79e-49 164
Msa0880710 MtrunA17_Chr8g0387421 61.207 116 45 0 1 116 1 116 2.06e-48 165
Msa0880710 MtrunA17_Chr4g0022931 59.829 117 46 1 1 116 1 117 2.82e-48 163
Msa0880710 MtrunA17_Chr8g0342541 61.017 118 46 0 1 118 1 118 4.94e-48 164
Msa0880710 MtrunA17_Chr3g0135311 61.017 118 45 1 1 117 1 118 5.08e-48 164
Msa0880710 MtrunA17_Chr1g0193801 63.793 116 42 0 1 116 1 116 8.24e-48 165
Msa0880710 MtrunA17_Chr6g0452271 58.621 116 48 0 1 116 1 116 1.03e-47 163
Msa0880710 MtrunA17_Chr2g0311221 64.545 110 39 0 2 111 4 113 1.13e-47 163
Msa0880710 MtrunA17_Chr4g0058631 62.931 116 43 0 1 116 1 116 1.15e-47 164
Msa0880710 MtrunA17_Chr7g0270891 62.931 116 43 0 1 116 1 116 1.24e-47 164
Msa0880710 MtrunA17_Chr4g0022911 58.621 116 47 1 1 115 1 116 3.34e-47 160
Msa0880710 MtrunA17_Chr2g0323351 60.345 116 46 0 1 116 1 116 3.36e-47 159
Msa0880710 MtrunA17_Chr4g0022901 59.483 116 46 1 1 115 1 116 5.54e-47 159
Msa0880710 MtrunA17_Chr1g0151941 55.645 124 54 1 1 123 1 124 8.27e-47 159
Msa0880710 MtrunA17_Chr4g0028311 58.974 117 47 1 1 116 1 117 1.17e-46 160
Msa0880710 MtrunA17_Chr5g0397231 62.727 110 41 0 1 110 1 110 1.24e-46 160
Msa0880710 MtrunA17_Chr7g0271241 66.972 109 36 0 1 109 1 109 2.54e-46 161
Msa0880710 MtrunA17_Chr8g0342521 61.207 116 45 0 1 116 1 116 3.07e-46 160
Msa0880710 MtrunA17_Chr2g0309911 61.261 111 43 0 6 116 5 115 4.38e-46 158
Msa0880710 MtrunA17_Chr3g0117091 62.069 116 44 0 1 116 1 116 5.38e-46 159
Msa0880710 MtrunA17_Chr7g0228231 66.667 105 35 0 12 116 14 118 9.03e-46 154
Msa0880710 MtrunA17_Chr4g0022881 59.322 118 48 0 1 118 1 118 2.12e-45 154
Msa0880710 MtrunA17_Chr6g0450101 61.017 118 44 1 1 116 1 118 2.33e-45 153
Msa0880710 MtrunA17_Chr7g0264641 54.839 124 55 1 1 123 1 124 2.38e-45 155
Msa0880710 MtrunA17_Chr1g0168661 66.990 103 34 0 13 115 22 124 3.07e-45 154
Msa0880710 MtrunA17_Chr2g0327351 61.261 111 42 1 1 110 1 111 4.26e-45 156
Msa0880710 MtrunA17_Chr8g0342481 42.157 204 111 5 1 199 1 202 4.70e-45 158
Msa0880710 MtrunA17_Chr1g0152011 57.265 117 49 1 1 116 1 117 5.46e-45 156
Msa0880710 MtrunA17_Chr1g0211161 61.404 114 44 0 3 116 4 117 8.19e-45 152
Msa0880710 MtrunA17_Chr5g0400821 56.410 117 50 1 1 116 1 117 1.21e-44 154
Msa0880710 MtrunA17_Chr4g0055981 62.617 107 40 0 9 115 52 158 4.25e-44 151
Msa0880710 MtrunA17_Chr7g0240821 50.714 140 64 1 17 151 6 145 4.54e-44 150
Msa0880710 MtrunA17_Chr1g0209661 62.500 104 39 0 12 115 27 130 1.31e-43 152
Msa0880710 MtrunA17_Chr1g0203441 46.821 173 89 2 1 172 1 171 1.39e-43 150
Msa0880710 MtrunA17_Chr4g0032401 61.905 105 40 0 12 116 17 121 2.20e-43 152
Msa0880710 MtrunA17_Chr2g0328771 57.627 118 46 1 12 129 20 133 2.50e-43 151
Msa0880710 MtrunA17_Chr1g0186061 65.049 103 36 0 13 115 21 123 2.51e-43 149
Msa0880710 MtrunA17_Chr3g0088461 61.111 108 42 0 9 116 19 126 2.99e-43 152
Msa0880710 MtrunA17_Chr4g0054391 60.000 110 43 1 1 109 1 110 4.27e-43 150
Msa0880710 MtrunA17_Chr6g0487491 55.645 124 46 2 1 115 1 124 1.81e-42 147
Msa0880710 MtrunA17_Chr1g0194291 64.423 104 37 0 9 112 18 121 4.96e-42 146
Msa0880710 MtrunA17_Chr8g0343831 61.165 103 40 0 14 116 10 112 6.31e-42 146
Msa0880710 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 6.95e-42 148
Msa0880710 MtrunA17_Chr3g0080861 49.275 138 62 1 10 147 35 164 1.81e-41 151
Msa0880710 MtrunA17_Chr8g0354661 58.491 106 44 0 10 115 35 140 4.37e-41 150
Msa0880710 MtrunA17_Chr5g0417821 57.944 107 45 0 10 116 5 111 2.33e-40 143
Msa0880710 MtrunA17_Chr3g0099131 59.615 104 42 0 12 115 41 144 6.72e-40 147
Msa0880710 MtrunA17_Chr6g0470971 57.143 112 48 0 4 115 6 117 1.39e-39 140
Msa0880710 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 1.42e-39 134
Msa0880710 MtrunA17_Chr5g0434911 53.636 110 51 0 7 116 16 125 7.03e-39 139
Msa0880710 MtrunA17_Chr7g0220341 56.881 109 45 1 10 116 23 131 7.23e-39 139
Msa0880710 MtrunA17_Chr5g0434931 55.660 106 47 0 11 116 34 139 7.41e-39 139
Msa0880710 MtrunA17_Chr2g0322521 58.879 107 44 0 9 115 26 132 8.61e-39 141
Msa0880710 MtrunA17_Chr1g0194301 48.252 143 65 2 8 141 29 171 9.51e-39 138
Msa0880710 MtrunA17_Chr5g0434831 56.604 106 46 0 11 116 6 111 1.53e-38 135
Msa0880710 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 3.19e-37 137
Msa0880710 MtrunA17_Chr1g0192411 48.387 124 64 0 8 131 8 131 5.05e-37 137
Msa0880710 MtrunA17_Chr7g0228991 54.717 106 48 0 11 116 28 133 5.74e-37 134
Msa0880710 MtrunA17_Chr4g0068921 59.048 105 43 0 10 114 22 126 4.20e-36 129
Msa0880710 MtrunA17_Chr2g0293911 57.944 107 45 0 8 114 20 126 5.30e-36 132
Msa0880710 MtrunA17_Chr1g0180391 39.791 191 103 3 12 190 19 209 8.28e-36 129
Msa0880710 MtrunA17_Chr7g0247131 68.493 73 23 0 44 116 10 82 1.73e-35 129
Msa0880710 MtrunA17_Chr8g0360111 53.922 102 47 0 11 112 24 125 4.32e-35 128
Msa0880710 MtrunA17_Chr5g0434841 52.830 106 50 0 11 116 19 124 4.57e-35 129
Msa0880710 MtrunA17_Chr2g0327821 52.885 104 49 0 12 115 6 109 9.50e-34 124
Msa0880710 MtrunA17_Chr4g0030881 52.727 110 45 1 13 115 8 117 1.03e-33 124
Msa0880710 MtrunA17_Chr5g0395221 61.364 88 34 0 1 88 1 88 5.51e-33 117
Msa0880710 MtrunA17_Chr2g0323321 61.957 92 34 1 1 92 1 91 8.62e-33 117
Msa0880710 MtrunA17_Chr5g0440781 49.515 103 51 1 13 114 13 115 5.85e-32 118
Msa0880710 MtrunA17_Chr2g0294821 37.500 272 110 14 89 328 5 248 2.12e-31 118
Msa0880710 MtrunA17_Chr5g0441141 49.515 103 51 1 13 114 13 115 2.99e-31 118
Msa0880710 MtrunA17_Chr5g0440761 49.515 103 51 1 13 114 13 115 3.20e-31 118
Msa0880710 MtrunA17_Chr8g0342511 57.471 87 37 0 1 87 1 87 1.23e-30 111
Msa0880710 MtrunA17_Chr5g0441131 46.364 110 58 1 10 118 7 116 2.92e-30 113
Msa0880710 MtrunA17_Chr8g0342531 45.902 122 61 1 1 117 1 122 3.07e-30 112
Msa0880710 MtrunA17_Chr3g0099141 57.831 83 35 0 12 94 40 122 3.76e-29 109
Msa0880710 MtrunA17_Chr3g0133601 50.000 110 54 1 9 118 32 140 6.12e-28 108
Msa0880710 MtrunA17_Chr8g0342461 53.333 90 41 1 1 89 1 90 6.43e-28 105
Msa0880710 MtrunA17_Chr4g0053431 47.414 116 60 1 14 129 5 119 1.06e-27 108
Msa0880710 MtrunA17_Chr8g0342471 53.333 90 41 1 1 89 1 90 1.89e-27 104
Msa0880710 MtrunA17_Chr8g0334881 45.192 104 56 1 12 114 10 113 2.26e-27 109
Msa0880710 MtrunA17_Chr5g0401731 44.094 127 68 2 14 140 15 138 1.02e-26 107
Msa0880710 MtrunA17_Chr4g0013361 43.269 104 58 1 12 114 10 113 1.43e-26 106
Msa0880710 MtrunA17_Chr4g0008551 52.427 103 46 2 14 115 38 138 1.64e-26 107
Msa0880710 MtrunA17_Chr6g0454921 45.614 114 59 2 14 127 15 125 6.33e-26 102
Msa0880710 MtrunA17_Chr7g0229101 61.429 70 27 0 44 113 4 73 2.86e-25 100
Msa0880710 MtrunA17_Chr3g0117511 44.444 108 59 1 8 115 177 283 3.64e-25 105
Msa0880710 MtrunA17_Chr5g0429661 47.619 105 52 2 12 115 120 222 7.68e-25 102
Msa0880710 MtrunA17_Chr7g0229131 44.000 100 56 0 44 143 4 103 6.39e-24 96.3
Msa0880710 MtrunA17_Chr4g0058991 43.119 109 59 2 8 115 203 309 9.49e-24 101
Msa0880710 MtrunA17_Chr5g0437321 49.495 99 49 1 14 112 19 116 2.65e-23 97.4
Msa0880710 MtrunA17_Chr6g0480581 42.056 107 58 2 14 117 4 109 5.88e-23 95.5
Msa0880710 MtrunA17_Chr3g0093811 51.190 84 38 1 36 116 3 86 2.95e-22 94.4
Msa0880710 MtrunA17_Chr5g0425591 47.059 85 44 1 10 93 7 91 3.39e-22 89.4
Msa0880710 MtrunA17_Chr5g0434901 57.576 66 28 0 48 113 9 74 5.18e-22 89.4
Msa0880710 MtrunA17_Chr7g0238631 41.739 115 58 2 12 122 111 220 1.76e-21 95.1
Msa0880710 MtrunA17_Chr3g0139671 37.838 111 68 1 12 122 83 192 3.15e-21 94.7
Msa0880710 MtrunA17_Chr6g0460661 33.333 138 78 2 14 138 16 152 1.46e-20 87.0
Msa0880710 MtrunA17_Chr1g0157731 36.036 111 70 1 12 122 89 198 1.75e-20 92.4
Msa0880710 MtrunA17_Chr6g0453751 46.739 92 40 2 11 93 19 110 2.06e-20 85.5
Msa0880710 MtrunA17_Chr7g0228531 40.566 106 61 2 10 115 216 319 6.24e-20 90.1
Msa0880710 MtrunA17_Chr7g0238651 34.167 120 77 1 14 131 7 126 3.37e-19 87.0
Msa0880710 MtrunA17_Chr5g0417621 39.216 102 61 1 14 115 134 234 1.99e-18 85.5
Msa0880710 MtrunA17_Chr3g0125801 38.333 120 68 2 14 128 16 134 5.88e-18 82.8
Msa0880710 MtrunA17_Chr4g0042501 39.806 103 59 2 14 115 105 205 5.97e-18 84.0
Msa0880710 MtrunA17_Chr5g0397841 42.857 98 55 1 12 109 108 204 1.10e-17 83.6
Msa0880710 MtrunA17_Chr7g0228481 39.423 104 61 2 10 113 216 317 1.59e-17 82.8
Msa0880710 MtrunA17_Chr7g0247141 66.667 48 15 1 1 47 1 48 1.01e-16 73.6
Msa0880710 MtrunA17_Chr6g0460671 36.364 110 69 1 14 123 99 207 1.31e-16 79.7
Msa0880710 MtrunA17_Chr7g0233061 37.736 106 51 3 14 113 180 276 1.31e-16 79.7
Msa0880710 MtrunA17_Chr5g0416341 37.374 99 61 1 17 115 29 126 4.56e-16 78.6
Msa0880710 MtrunA17_Chr1g0177901 41.111 90 52 1 24 113 4 92 9.82e-16 75.1
Msa0880710 MtrunA17_Chr7g0228401 39.326 89 53 1 25 113 290 377 1.55e-15 77.4
Msa0880710 MtrunA17_Chr7g0254261 37.255 102 63 1 14 115 89 189 1.58e-15 76.6
Msa0880710 MtrunA17_Chr1g0193901 53.448 58 26 1 12 68 11 68 2.84e-15 70.9
Msa0880710 MtrunA17_Chr1g0193891 53.448 58 26 1 12 68 11 68 2.84e-15 70.9
Msa0880710 MtrunA17_Chr1g0193871 53.448 58 26 1 12 68 11 68 2.84e-15 70.9
Msa0880710 MtrunA17_Chr1g0193881 53.448 58 26 1 12 68 11 68 2.84e-15 70.9
Msa0880710 MtrunA17_Chr5g0434871 58.140 43 18 0 74 116 2 44 1.45e-14 67.8
Msa0880710 MtrunA17_Chr8g0362231 37.374 99 60 2 17 114 25 122 1.55e-14 73.9
Msa0880710 MtrunA17_Chr5g0434891 48.214 56 29 0 77 132 1 56 4.71e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880710 AT5G49330.1 54.783 230 86 3 1 220 1 222 2.80e-76 238
Msa0880710 AT2G47460.1 70.968 155 34 2 1 147 1 152 4.80e-73 230
Msa0880710 AT3G62610.1 79.339 121 25 0 1 121 1 121 5.19e-69 219
Msa0880710 AT1G35515.1 74.138 116 30 0 1 116 1 116 8.42e-61 194
Msa0880710 AT4G09460.1 73.276 116 31 0 1 116 1 116 1.96e-60 193
Msa0880710 AT4G38620.1 62.676 142 47 1 1 142 1 136 2.64e-60 194
Msa0880710 AT1G22640.1 70.690 116 34 0 1 116 1 116 1.38e-59 192
Msa0880710 AT1G06180.1 70.940 117 34 0 1 117 1 117 2.00e-59 191
Msa0880710 AT2G31180.1 63.235 136 47 1 1 136 1 133 2.26e-59 191
Msa0880710 AT5G16770.4 71.552 116 33 0 1 116 1 116 3.48e-59 193
Msa0880710 AT5G16770.3 71.552 116 33 0 1 116 1 116 3.48e-59 193
Msa0880710 AT4G21440.1 69.828 116 35 0 1 116 1 116 6.09e-59 193
Msa0880710 AT5G16770.1 71.552 116 33 0 1 116 1 116 6.14e-59 193
Msa0880710 AT5G16770.2 71.552 116 33 0 1 116 1 116 6.14e-59 193
Msa0880710 AT3G02940.2 69.828 116 35 0 1 116 1 116 6.35e-59 192
Msa0880710 AT5G15310.4 70.690 116 34 0 1 116 1 116 7.44e-59 190
Msa0880710 AT3G02940.1 69.828 116 35 0 1 116 1 116 1.20e-58 192
Msa0880710 AT3G02940.3 69.828 116 35 0 1 116 1 116 1.20e-58 192
Msa0880710 AT5G15310.1 70.690 116 34 0 1 116 1 116 1.59e-58 191
Msa0880710 AT3G01140.2 49.741 193 91 1 1 193 1 187 1.69e-58 192
Msa0880710 AT2G16720.1 61.702 141 48 1 1 141 1 135 1.85e-58 189
Msa0880710 AT5G15310.2 70.690 116 34 0 1 116 1 116 2.46e-58 191
Msa0880710 AT4G28110.1 68.103 116 37 0 1 116 1 116 2.79e-58 189
Msa0880710 AT3G23250.1 46.766 201 77 3 1 198 1 174 4.99e-58 189
Msa0880710 AT3G61250.1 65.546 119 41 0 1 119 1 119 2.42e-57 187
Msa0880710 AT3G13540.1 69.912 113 34 0 4 116 15 127 1.33e-56 184
Msa0880710 AT1G08810.1 68.103 116 37 0 1 116 1 116 1.69e-56 185
Msa0880710 AT4G05100.1 68.376 117 36 1 1 116 1 117 2.69e-56 186
Msa0880710 AT5G16600.1 47.170 212 98 3 1 210 1 200 2.11e-55 183
Msa0880710 AT5G62470.2 65.873 126 39 1 1 126 1 122 2.44e-55 184
Msa0880710 AT3G01140.1 48.705 193 93 1 1 193 44 230 2.48e-55 185
Msa0880710 AT4G34990.1 68.966 116 36 0 1 116 1 116 2.59e-55 181
Msa0880710 AT1G74650.1 65.546 119 41 0 1 119 1 119 8.43e-55 182
Msa0880710 AT1G34670.1 66.379 116 39 0 1 116 1 116 1.23e-54 182
Msa0880710 AT3G47600.1 50.292 171 79 1 1 165 1 171 1.89e-54 181
Msa0880710 AT5G62470.1 65.873 126 38 2 1 126 1 121 6.22e-54 180
Msa0880710 AT5G07690.1 68.421 114 36 0 1 114 1 114 1.10e-53 179
Msa0880710 AT5G10280.1 64.655 116 41 0 1 116 1 116 1.13e-53 179
Msa0880710 AT4G17785.2 59.184 147 53 2 1 140 1 147 2.49e-53 179
Msa0880710 AT4G17785.1 59.184 147 53 2 1 140 1 147 2.77e-53 179
Msa0880710 AT5G65230.1 65.517 116 40 0 1 116 1 116 3.06e-53 177
Msa0880710 AT5G61420.2 64.655 116 41 0 1 116 1 116 6.29e-53 178
Msa0880710 AT3G28910.1 66.379 116 39 0 1 116 1 116 8.77e-53 176
Msa0880710 AT1G66230.1 63.793 116 42 0 1 116 1 116 4.97e-52 173
Msa0880710 AT1G79180.1 56.028 141 62 0 2 142 4 144 1.23e-51 172
Msa0880710 AT4G12350.1 63.793 116 42 0 1 116 1 116 6.51e-51 171
Msa0880710 AT1G56160.1 64.348 115 41 0 2 116 4 118 7.05e-51 171
Msa0880710 AT5G54230.1 65.517 116 40 0 1 116 1 116 8.02e-51 171
Msa0880710 AT5G60890.1 61.207 116 45 0 1 116 1 116 1.17e-50 170
Msa0880710 AT5G56110.1 64.655 116 41 0 1 116 1 116 1.45e-50 171
Msa0880710 AT5G07700.1 62.931 116 43 0 1 116 1 116 2.08e-50 171
Msa0880710 AT5G07700.2 62.931 116 43 0 1 116 1 116 2.08e-50 171
Msa0880710 AT1G16490.1 62.609 115 43 0 2 116 4 118 2.23e-50 169
Msa0880710 AT4G22680.1 62.931 116 43 0 1 116 1 116 5.91e-50 167
Msa0880710 AT3G13890.2 60.345 116 46 0 1 116 1 116 1.97e-49 169
Msa0880710 AT1G18570.1 63.248 117 42 1 1 116 1 117 2.60e-49 168
Msa0880710 AT1G09540.1 65.517 116 40 0 1 116 1 116 3.49e-49 168
Msa0880710 AT1G74080.1 49.112 169 71 4 1 162 1 161 8.01e-49 166
Msa0880710 AT5G26660.1 64.655 116 41 0 1 116 1 116 1.95e-48 166
Msa0880710 AT5G14340.1 63.793 116 42 0 1 116 13 128 4.27e-48 163
Msa0880710 AT1G57560.1 63.793 116 42 0 1 116 1 116 6.10e-48 164
Msa0880710 AT4G01680.3 64.655 116 41 0 1 116 1 116 6.93e-48 161
Msa0880710 AT1G57560.2 63.793 116 42 0 1 116 1 116 8.82e-48 162
Msa0880710 AT1G74430.1 63.793 116 42 0 1 116 1 116 1.10e-47 162
Msa0880710 AT4G37780.1 54.135 133 55 2 1 127 1 133 1.26e-47 162
Msa0880710 AT4G01680.1 64.655 116 41 0 1 116 1 116 1.53e-47 163
Msa0880710 AT1G63910.1 60.345 116 46 0 1 116 1 116 1.69e-47 164
Msa0880710 AT5G23000.1 59.829 117 46 1 1 116 1 117 1.74e-47 163
Msa0880710 AT5G35550.1 68.571 105 33 0 12 116 14 118 1.87e-47 160
Msa0880710 AT5G14750.1 64.423 104 37 0 13 116 17 120 5.64e-47 157
Msa0880710 AT3G13890.1 56.000 125 46 1 1 116 1 125 1.99e-46 161
Msa0880710 AT5G40330.1 63.462 104 38 0 13 116 13 116 3.52e-46 156
Msa0880710 AT5G57620.1 53.788 132 60 1 1 131 1 132 7.05e-46 159
Msa0880710 AT2G36890.1 57.851 121 50 1 1 120 1 121 8.98e-46 157
Msa0880710 AT3G24310.1 67.619 105 34 0 11 115 17 121 1.09e-45 156
Msa0880710 AT5G62320.1 58.197 122 44 1 2 116 3 124 1.54e-45 155
Msa0880710 AT2G36890.2 57.851 121 50 1 1 120 42 162 1.62e-45 158
Msa0880710 AT2G32460.1 61.818 110 42 0 6 115 12 121 2.75e-45 161
Msa0880710 AT1G18710.1 61.207 116 45 0 1 116 1 116 3.04e-45 155
Msa0880710 AT3G27810.1 46.857 175 83 2 12 186 20 184 3.18e-45 154
Msa0880710 AT3G12820.1 59.649 114 46 0 3 116 5 118 3.34e-45 154
Msa0880710 AT2G32460.2 63.810 105 38 0 11 115 5 109 3.36e-45 160
Msa0880710 AT1G79180.2 47.024 168 56 1 2 136 4 171 4.37e-45 157
Msa0880710 AT5G40350.1 65.714 105 36 0 12 116 17 121 7.79e-45 152
Msa0880710 AT3G12720.1 52.174 138 57 2 6 143 16 144 1.13e-44 155
Msa0880710 AT5G65790.1 57.265 117 49 1 1 116 1 117 1.81e-44 156
Msa0880710 AT3G49690.1 57.265 117 49 1 1 116 1 117 2.16e-44 154
Msa0880710 AT4G13480.1 66.990 103 34 0 13 115 7 109 3.63e-44 152
Msa0880710 AT4G01680.2 58.594 128 41 1 1 116 1 128 4.14e-44 154
Msa0880710 AT5G12870.1 60.952 105 41 0 12 116 18 122 8.51e-44 152
Msa0880710 AT5G52600.1 59.615 104 42 0 12 115 12 115 1.07e-43 149
Msa0880710 AT3G27920.1 60.577 104 41 0 13 116 15 118 1.07e-43 150
Msa0880710 AT3G01530.1 63.810 105 38 0 12 116 25 129 1.11e-43 149
Msa0880710 AT3G30210.1 63.462 104 38 0 11 114 26 129 3.05e-43 150
Msa0880710 AT3G08500.1 61.111 108 42 0 9 116 27 134 4.05e-43 152
Msa0880710 AT3G28470.1 58.182 110 46 0 1 110 1 110 1.40e-42 150
Msa0880710 AT5G06100.1 58.095 105 44 0 11 115 31 135 1.79e-41 150
Msa0880710 AT5G55020.1 59.813 107 43 0 10 116 24 130 3.64e-41 150
Msa0880710 AT5G06100.5 58.095 105 44 0 11 115 31 135 7.66e-41 149
Msa0880710 AT5G06100.2 58.095 105 44 0 11 115 31 135 7.66e-41 149
Msa0880710 AT5G06100.3 58.095 105 44 0 11 115 31 135 7.66e-41 149
Msa0880710 AT5G06100.4 58.095 105 44 0 11 115 31 135 7.66e-41 149
Msa0880710 AT3G11440.2 57.692 104 44 0 12 115 41 144 1.92e-40 147
Msa0880710 AT1G68320.1 59.615 104 42 0 12 115 19 122 3.50e-40 142
Msa0880710 AT1G25340.1 59.223 103 42 0 13 115 19 121 4.27e-40 142
Msa0880710 AT4G26930.1 57.143 105 45 0 10 114 17 121 4.77e-40 145
Msa0880710 AT1G48000.1 60.952 105 41 0 10 114 30 134 6.81e-40 140
Msa0880710 AT3G11440.3 57.692 104 44 0 12 115 41 144 7.67e-40 147
Msa0880710 AT3G11440.4 57.692 104 44 0 12 115 41 144 7.67e-40 147
Msa0880710 AT3G11440.1 57.692 104 44 0 12 115 41 144 7.67e-40 147
Msa0880710 AT1G66370.1 37.991 229 122 6 1 224 1 214 1.08e-39 140
Msa0880710 AT2G47190.1 55.556 108 48 0 8 115 16 123 6.92e-39 139
Msa0880710 AT2G26960.1 54.717 106 48 0 9 114 17 122 1.01e-37 139
Msa0880710 AT4G25560.1 34.978 223 116 4 13 210 11 229 2.92e-37 135
Msa0880710 AT3G46130.1 56.190 105 46 0 11 115 8 112 1.28e-36 132
Msa0880710 AT5G59780.3 56.311 103 45 0 13 115 9 111 1.53e-36 132
Msa0880710 AT3G06490.1 60.748 107 42 0 8 114 15 121 6.93e-36 132
Msa0880710 AT1G25340.2 56.311 103 40 1 13 115 19 116 8.41e-36 131
Msa0880710 AT1G56650.1 52.459 122 56 1 11 130 7 128 1.33e-35 129
Msa0880710 AT1G66380.1 58.095 105 44 0 11 115 7 111 1.64e-35 126
Msa0880710 AT3G48920.1 53.846 104 48 0 13 116 19 122 1.72e-35 129
Msa0880710 AT1G25340.3 56.311 103 40 1 13 115 19 116 1.77e-35 131
Msa0880710 AT5G49620.1 46.309 149 63 1 8 139 22 170 5.47e-35 129
Msa0880710 AT1G66390.1 58.095 105 44 0 11 115 7 111 1.25e-34 127
Msa0880710 AT5G52260.1 48.855 131 67 0 13 143 13 143 1.72e-34 127
Msa0880710 AT3G53200.1 56.731 104 45 0 12 115 9 112 4.15e-33 122
Msa0880710 AT5G14750.3 66.234 77 23 1 40 116 13 86 9.55e-32 117
Msa0880710 AT2G26950.1 48.113 106 55 0 9 114 13 118 1.39e-31 122
Msa0880710 AT5G35550.2 72.222 72 20 0 45 116 50 121 1.90e-31 119
Msa0880710 AT5G49620.2 42.331 163 63 2 8 139 22 184 2.50e-31 120
Msa0880710 AT3G27810.2 44.366 142 69 2 45 186 4 135 8.45e-31 115
Msa0880710 AT5G40350.2 67.568 74 24 0 43 116 3 76 2.99e-30 113
Msa0880710 AT5G26660.2 70.833 72 21 0 45 116 14 85 5.79e-30 116
Msa0880710 AT3G46130.3 65.753 73 25 0 43 115 8 80 1.20e-28 110
Msa0880710 AT3G47600.2 60.976 82 28 1 45 126 39 116 1.57e-28 112
Msa0880710 AT5G59780.2 67.606 71 23 0 45 115 20 90 1.80e-28 110
Msa0880710 AT3G46130.4 67.606 71 23 0 45 115 20 90 3.47e-28 109
Msa0880710 AT3G12820.2 64.286 70 25 0 47 116 1 70 9.70e-28 107
Msa0880710 AT3G60460.1 44.037 109 60 1 7 114 6 114 2.20e-27 109
Msa0880710 AT3G09230.1 46.957 115 52 2 14 124 55 164 2.90e-26 107
Msa0880710 AT3G53200.2 64.789 71 25 0 45 115 9 79 3.83e-26 103
Msa0880710 AT3G27785.1 45.946 111 55 2 7 115 182 289 6.28e-25 104
Msa0880710 AT4G18770.1 37.580 157 87 5 8 158 211 362 7.78e-25 104
Msa0880710 AT1G22640.3 69.492 59 18 0 58 116 1 59 9.33e-25 99.8
Msa0880710 AT3G55730.1 50.980 102 49 1 14 115 56 156 2.91e-24 102
Msa0880710 AT2G39880.1 50.943 106 43 2 14 115 50 150 2.95e-24 102
Msa0880710 AT2G23290.1 49.020 102 51 1 14 115 13 113 1.00e-23 99.4
Msa0880710 AT5G58850.1 45.192 104 56 1 12 115 103 205 1.18e-23 100
Msa0880710 AT5G40360.1 36.441 118 73 2 12 129 156 271 1.49e-23 99.8
Msa0880710 AT4G37260.1 48.039 102 52 1 14 115 13 113 2.08e-23 99.0
Msa0880710 AT3G50060.1 46.078 102 54 1 14 115 6 106 7.65e-23 97.1
Msa0880710 AT5G14750.4 62.712 59 22 0 58 116 1 59 3.52e-22 91.3
Msa0880710 AT5G14750.2 62.712 59 22 0 58 116 1 59 3.52e-22 91.3
Msa0880710 AT5G11050.1 44.660 103 54 2 14 115 105 205 3.68e-22 96.7
Msa0880710 AT1G66380.3 59.722 72 29 0 44 115 7 78 4.22e-22 89.7
Msa0880710 AT3G23250.2 36.111 144 62 3 58 198 1 117 5.56e-22 92.8
Msa0880710 AT1G18960.1 40.777 103 58 2 14 116 10 109 8.31e-22 94.0
Msa0880710 AT5G11510.3 38.938 113 64 2 12 122 79 188 3.76e-21 94.7
Msa0880710 AT5G11510.1 38.938 113 64 2 12 122 79 188 3.76e-21 94.7
Msa0880710 AT5G11510.4 38.938 113 64 2 12 122 79 188 3.76e-21 94.7
Msa0880710 AT5G11510.2 38.938 113 64 2 12 122 79 188 4.68e-21 94.4
Msa0880710 AT1G71030.2 57.576 66 28 0 51 116 5 70 4.84e-21 89.4
Msa0880710 AT5G11510.5 38.938 113 64 2 12 122 79 188 5.36e-21 94.4
Msa0880710 AT1G71030.1 57.576 66 28 0 51 116 19 84 5.62e-21 89.4
Msa0880710 AT5G67300.1 45.098 102 55 1 14 115 6 106 5.80e-21 91.7
Msa0880710 AT5G02320.1 40.171 117 61 2 12 124 125 236 6.04e-21 94.0
Msa0880710 AT5G02320.2 40.171 117 61 2 12 124 125 236 6.04e-21 94.0
Msa0880710 AT5G02320.3 40.171 117 61 2 12 124 65 176 8.53e-21 93.2
Msa0880710 AT1G17950.1 41.176 102 59 1 14 115 5 105 1.07e-20 90.1
Msa0880710 AT1G66380.2 51.220 82 40 0 11 92 7 88 1.54e-20 85.9
Msa0880710 AT3G09370.1 41.593 113 57 2 12 120 128 235 1.61e-20 92.4
Msa0880710 AT3G09370.2 41.593 113 57 2 12 120 133 240 1.63e-20 92.4
Msa0880710 AT4G32730.1 35.606 132 82 2 12 141 85 215 2.21e-20 92.4
Msa0880710 AT3G09370.3 41.593 113 57 2 12 120 141 248 2.21e-20 92.0
Msa0880710 AT4G32730.5 35.606 132 82 2 12 141 85 215 3.29e-20 92.0
Msa0880710 AT4G32730.4 35.606 132 82 2 12 141 85 215 3.29e-20 92.0
Msa0880710 AT4G32730.3 35.606 132 82 2 12 141 85 215 3.29e-20 92.0
Msa0880710 AT4G32730.2 35.606 132 82 2 12 141 85 215 3.29e-20 92.0
Msa0880710 AT1G69560.1 32.258 155 85 3 9 144 102 255 6.22e-20 89.4
Msa0880710 AT1G69560.2 33.333 156 82 4 9 144 118 271 9.89e-20 89.0
Msa0880710 AT4G33450.1 35.714 126 74 3 3 127 13 132 6.66e-19 85.1
Msa0880710 AT1G73410.1 42.056 107 59 2 10 115 2 106 6.78e-19 84.7
Msa0880710 AT1G73410.2 42.056 107 59 2 10 115 2 106 9.50e-19 83.6
Msa0880710 AT1G26780.2 39.423 104 62 1 12 115 96 198 3.26e-18 84.7
Msa0880710 AT1G26780.1 40.952 105 59 2 12 115 96 198 4.14e-18 83.2
Msa0880710 AT2G25230.1 37.963 108 66 1 7 114 19 125 9.35e-18 81.6
Msa0880710 AT5G17800.1 37.864 103 63 1 14 116 93 194 3.59e-17 81.3
Msa0880710 AT2G37630.1 33.884 121 77 2 13 131 3 122 3.88e-17 81.6
Msa0880710 AT3G29020.1 35.922 103 65 1 14 116 65 166 8.08e-17 79.0
Msa0880710 AT4G00540.2 37.391 115 70 1 11 123 100 214 1.17e-16 80.5
Msa0880710 AT3G29020.2 35.922 103 65 1 14 116 67 168 1.25e-16 79.7
Msa0880710 AT4G00540.1 37.391 115 70 1 11 123 98 212 1.87e-16 80.1
Msa0880710 AT5G59780.1 67.391 46 15 0 70 115 1 46 5.43e-16 75.1
Msa0880710 AT3G46130.2 67.391 46 15 0 70 115 1 46 1.03e-15 74.7
Msa0880710 AT1G14350.2 37.374 99 61 1 17 115 28 125 1.93e-15 77.0
Msa0880710 AT1G14350.1 37.374 99 61 1 17 115 28 125 1.93e-15 77.0
Msa0880710 AT4G25560.2 28.916 166 89 4 70 210 2 163 4.24e-15 73.6
Msa0880710 AT5G40430.1 35.185 108 68 2 7 114 47 152 7.62e-15 73.6
Msa0880710 AT5G39700.1 36.275 102 64 1 15 116 57 157 8.07e-15 72.4
Msa0880710 AT2G02820.3 35.354 99 63 1 17 115 33 130 3.06e-14 72.8
Msa0880710 AT2G02820.2 35.354 99 63 1 17 115 33 130 5.43e-14 72.8
Msa0880710 AT2G02820.1 35.354 99 63 1 17 115 33 130 5.46e-14 72.8
Msa0880710 AT1G74650.3 58.140 43 18 0 77 119 1 43 1.58e-12 67.0
Msa0880710 AT3G28910.2 65.000 40 14 0 77 116 1 40 2.16e-12 66.6
Msa0880710 AT5G61420.1 72.222 36 10 0 81 116 2 37 4.03e-12 66.2

Find 95 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGGAACTCTCATTTA+AGG 0.123429 6_1:-27587585 Msa0880710:CDS
TCAACTAATTCGTTCATATT+AGG 0.154511 6_1:+27587325 None:intergenic
AATATTCTAGATCCTGATTT+TGG 0.176502 6_1:-27587181 Msa0880710:CDS
AAAGCCATTATCTTGGTAAT+TGG 0.203447 6_1:+27586946 None:intergenic
GCCAAGATGTTAATTGCTTC+TGG 0.239272 6_1:-27586976 Msa0880710:CDS
AAGATCCTTCACCATGTTCT+TGG 0.254314 6_1:+27588719 None:intergenic
TTGATCCCTTGATTTCATTC+AGG 0.262021 6_1:-27586918 Msa0880710:exon
CAACTAATTCGTTCATATTA+GGG 0.276288 6_1:+27587326 None:intergenic
GCTCCTTGCTGTGAGAAAAT+TGG 0.276930 6_1:-27588796 Msa0880710:CDS
GGCAAATAGTGCATTGTAAT+TGG 0.295600 6_1:-27586571 Msa0880710:three_prime_UTR
GTCCAATTCATAGTCATAAA+AGG 0.300930 6_1:-27586712 Msa0880710:three_prime_UTR
GAATTAAATAAAAGTTTATC+AGG 0.305357 6_1:-27586850 Msa0880710:three_prime_UTR
GTCAAGTTGCATGCTGTTCT+TGG 0.310664 6_1:-27588470 Msa0880710:CDS
ACTTCCAATTACCAAGATAA+TGG 0.336777 6_1:-27586950 Msa0880710:CDS
TGCATGCTGTTCTTGGTAAC+AGG 0.341708 6_1:-27588463 Msa0880710:intron
GTTTCAAATGTCAAAATCAT+TGG 0.352548 6_1:-27589044 Msa0880710:five_prime_UTR
CTACCTTCTAAATGCATATC+AGG 0.360676 6_1:+27587046 None:intergenic
CACTGTAGCATTATATATAA+AGG 0.362865 6_1:+27589009 None:intergenic
AGACGTGTGTCTATGTAATA+AGG 0.371204 6_1:-27586465 Msa0880710:three_prime_UTR
ATCTAGAATATTATCATCAT+TGG 0.375461 6_1:+27587192 None:intergenic
TTACTGTTTGTTATCATCAA+TGG 0.382126 6_1:-27588824 Msa0880710:exon
GAGAAAATTGGTTTGAAGAA+AGG 0.383715 6_1:-27588784 Msa0880710:CDS
CACATGCACACTAAGAGAAA+TGG 0.389033 6_1:+27588923 None:intergenic
ATATTAATATTCTCATGATC+TGG 0.396470 6_1:+27587223 None:intergenic
AACGAATTAGTTGACACTTT+GGG 0.397718 6_1:-27587316 Msa0880710:CDS
AAGAACATGGTGAAGGATCT+TGG 0.398904 6_1:-27588717 Msa0880710:CDS
TCATCATCTAACCATTCATA+TGG 0.404686 6_1:+27587292 None:intergenic
TAAGACAGTAATAATTGAAA+AGG 0.413128 6_1:+27588951 None:intergenic
TACTGTTTGTTATCATCAAT+GGG 0.414763 6_1:-27588823 Msa0880710:exon
CCCAGAAGCAATTAACATCT+TGG 0.415039 6_1:+27586975 None:intergenic
ATGGTGGTAGTGGTGGTGTT+TGG 0.417643 6_1:-27587138 Msa0880710:CDS
CCAAGATGTTAATTGCTTCT+GGG 0.418361 6_1:-27586975 Msa0880710:CDS
GCACTATTTGCCACAATTCA+AGG 0.421226 6_1:+27586582 None:intergenic
CTAATGAAAATCAATAAATT+CGG 0.434158 6_1:-27586442 Msa0880710:three_prime_UTR
TCCTCTACCAGCTCTTCTCT+TGG 0.435104 6_1:+27587480 None:intergenic
GAACGAATTAGTTGACACTT+TGG 0.445667 6_1:-27587317 Msa0880710:CDS
CCCACTAGTACACCAAAATC+AGG 0.454662 6_1:+27587169 None:intergenic
TTGTTGTTCTGATCTTGCCT+TGG 0.454759 6_1:+27587451 None:intergenic
AAGGTCCCATTGTTGATTGT+AGG 0.454798 6_1:+27587012 None:intergenic
TGGCCTGATATGCATTTAGA+AGG 0.455814 6_1:-27587049 Msa0880710:CDS
CTAAGTTGCATGTTTGAAAG+TGG 0.456594 6_1:-27587259 Msa0880710:CDS
TGATCCCTTGATTTCATTCA+GGG 0.457654 6_1:-27586917 Msa0880710:three_prime_UTR
GGGCTTGCATTTGCATGGAT+GGG 0.458250 6_1:+27588972 None:intergenic
AATGATAAAAGCCATTATCT+TGG 0.464285 6_1:+27586939 None:intergenic
AGGGCTTGCATTTGCATGGA+TGG 0.467452 6_1:+27588971 None:intergenic
ATCTCCCCTGAATGAAATCA+AGG 0.468250 6_1:+27586912 None:intergenic
GGAAATAATGATGGTGGTAG+TGG 0.470078 6_1:-27587148 Msa0880710:CDS
ACACTTTGGGACCATATGAA+TGG 0.470929 6_1:-27587303 Msa0880710:CDS
TTGGTTTGAAGAAAGGAAGA+TGG 0.472897 6_1:-27588777 Msa0880710:CDS
TTATGACTATGAATTGGACT+TGG 0.489126 6_1:+27586716 None:intergenic
ATTCTGTTTATGAATATCAA+TGG 0.490117 6_1:-27587069 Msa0880710:CDS
TTAACAGCAGCTATGTCAAT+TGG 0.494545 6_1:+27587517 None:intergenic
ATCTCATTATCTGTACGTCC+TGG 0.494808 6_1:+27587613 None:intergenic
GAAAGAGTTGCAGACTAAGA+TGG 0.508370 6_1:-27588556 Msa0880710:CDS
TATGACTATGAATTGGACTT+GGG 0.509205 6_1:+27586717 None:intergenic
AACTATGTTATATGTACTGC+AGG 0.512059 6_1:-27589111 Msa0880710:five_prime_UTR
GCTGCTTCCAAGAGAAGAGC+TGG 0.520358 6_1:-27587487 Msa0880710:CDS
AAGACAGTAATAATTGAAAA+GGG 0.524538 6_1:+27588952 None:intergenic
AGCCACACCTCCTTGAATTG+TGG 0.526100 6_1:-27586592 Msa0880710:three_prime_UTR
GAGAGGTAACATCACTCCTC+AGG 0.534201 6_1:-27588507 Msa0880710:CDS
GGTGTTTGGAGTTCATCAAA+TGG 0.542452 6_1:-27587124 Msa0880710:CDS
TTCAATCCTACAATCAACAA+TGG 0.545566 6_1:-27587018 Msa0880710:CDS
GGCTTGCATTTGCATGGATG+GGG 0.545853 6_1:+27588973 None:intergenic
TCCAAGAGAAGAGCTGGTAG+AGG 0.545939 6_1:-27587481 Msa0880710:CDS
GAAAAGGGCTTGCATTTGCA+TGG 0.547975 6_1:+27588967 None:intergenic
TCAATCCTACAATCAACAAT+GGG 0.548140 6_1:-27587017 Msa0880710:CDS
TTCTCTTGGAAGCAGCTGCT+AGG 0.551219 6_1:+27587494 None:intergenic
ACAATGATTTCTTCCTCCTG+AGG 0.552629 6_1:+27588491 None:intergenic
GTACTAGTGGGAAATAATGA+TGG 0.558595 6_1:-27587157 Msa0880710:CDS
AGGAAGATGGACTGCTGAAG+AGG 0.567938 6_1:-27588764 Msa0880710:CDS
TGTAGGTGGTCTGTAATAGC+TGG 0.577208 6_1:-27587643 Msa0880710:intron
CTTGGCCTTGTTGATCGCAA+AGG 0.577928 6_1:+27586993 None:intergenic
TTTAGTTCTTGCTCAACAAG+AGG 0.580735 6_1:-27586778 Msa0880710:three_prime_UTR
ATATTAGGTTTGTTGAGATG+TGG 0.582195 6_1:-27588578 Msa0880710:intron
AATAATGATGGTGGTAGTGG+TGG 0.585866 6_1:-27587145 Msa0880710:CDS
TATATATAAAGGTATTCAGT+GGG 0.591783 6_1:+27589020 None:intergenic
TGCCACAATTCAAGGAGGTG+TGG 0.592195 6_1:+27586590 None:intergenic
GTAATAGCTGGACATTTACC+AGG 0.593050 6_1:-27587631 Msa0880710:CDS
TTAGTTCTTGCTCAACAAGA+GGG 0.594011 6_1:-27586777 Msa0880710:three_prime_UTR
TCATCAAATGGTGCTGAAAG+CGG 0.596720 6_1:-27587112 Msa0880710:CDS
TCTCCCCTGAATGAAATCAA+GGG 0.605107 6_1:+27586913 None:intergenic
AGTTTAGTTATATAATGTAG+TGG 0.610899 6_1:-27586810 Msa0880710:three_prime_UTR
TATATCCAAGAACATGGTGA+AGG 0.631658 6_1:-27588724 Msa0880710:CDS
GATCCCTTGATTTCATTCAG+GGG 0.633030 6_1:-27586916 Msa0880710:three_prime_UTR
GCACACTAAGAGAAATGGAA+AGG 0.639716 6_1:+27588928 None:intergenic
AGGTAACATCACTCCTCAGG+AGG 0.641469 6_1:-27588504 Msa0880710:CDS
TTATATATAAAGGTATTCAG+TGG 0.648363 6_1:+27589019 None:intergenic
CTGGTAGAGGAGCTGCACCA+AGG 0.656409 6_1:-27587468 Msa0880710:CDS
TTAAGATCAGATGTGAAGAG+AGG 0.661497 6_1:-27588524 Msa0880710:CDS
ACTGATTATATCCAAGAACA+TGG 0.678325 6_1:-27588730 Msa0880710:CDS
TGGGACCTTTGCGATCAACA+AGG 0.687523 6_1:-27586998 Msa0880710:CDS
CTAGTGGGAAATAATGATGG+TGG 0.703436 6_1:-27587154 Msa0880710:CDS
CTATTTGCCACAATTCAAGG+AGG 0.741038 6_1:+27586585 None:intergenic
TCAACAAGAGGGTAAGTGTG+TGG 0.749619 6_1:-27586766 Msa0880710:three_prime_UTR
TTATATATAATGCTACAGTG+AGG 0.769521 6_1:-27589006 Msa0880710:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAACAAAATGAAATATT+AGG - chr6_1:27586956-27586975 Msa0880710:CDS 10.0%
!! TCTATAACAAAAATAAAATA+AGG + chr6_1:27587692-27587711 None:intergenic 10.0%
!!! AATTTTTTTATATGATCAAT+TGG + chr6_1:27587810-27587829 None:intergenic 10.0%
!! ATAATGAGATAAAAAATTAT+TGG - chr6_1:27587949-27587968 Msa0880710:intron 10.0%
!! CAATATTAATACATTGAAAT+TGG - chr6_1:27587832-27587851 Msa0880710:intron 15.0%
!! GAATTAAATAAAAGTTTATC+AGG - chr6_1:27588699-27588718 Msa0880710:CDS 15.0%
!! CTAATGAAAATCAATAAATT+CGG - chr6_1:27589107-27589126 Msa0880710:five_prime_UTR 15.0%
!!! TATATATAAAGGTATTCAGT+GGG + chr6_1:27586532-27586551 None:intergenic 20.0%
!!! TTATATATAAAGGTATTCAG+TGG + chr6_1:27586533-27586552 None:intergenic 20.0%
!! AAGACAGTAATAATTGAAAA+GGG + chr6_1:27586600-27586619 None:intergenic 20.0%
!! TAAGACAGTAATAATTGAAA+AGG + chr6_1:27586601-27586620 None:intergenic 20.0%
!!! ATGTAGATTAATTTGAAATG+AGG + chr6_1:27587176-27587195 None:intergenic 20.0%
!!! TCACATGTCTATATTTTTTT+TGG + chr6_1:27587525-27587544 None:intergenic 20.0%
!!! CTACTTAAAAATTGTTGTTA+TGG - chr6_1:27587882-27587901 Msa0880710:intron 20.0%
!! ATATTAATATTCTCATGATC+TGG + chr6_1:27588329-27588348 None:intergenic 20.0%
!!! ATCTAGAATATTATCATCAT+TGG + chr6_1:27588360-27588379 None:intergenic 20.0%
!! ATTCTGTTTATGAATATCAA+TGG - chr6_1:27588480-27588499 Msa0880710:CDS 20.0%
!! AGTTTAGTTATATAATGTAG+TGG - chr6_1:27588739-27588758 Msa0880710:CDS 20.0%
!!! CTAATCTAAATGTTTTTATG+AGG + chr6_1:27589061-27589080 None:intergenic 20.0%
!! CATAAAAACATTTAGATTAG+AGG - chr6_1:27589061-27589080 Msa0880710:five_prime_UTR 20.0%
! GTTTCAAATGTCAAAATCAT+TGG - chr6_1:27586505-27586524 Msa0880710:three_prime_UTR 25.0%
! CACTGTAGCATTATATATAA+AGG + chr6_1:27586543-27586562 None:intergenic 25.0%
! TTATATATAATGCTACAGTG+AGG - chr6_1:27586543-27586562 Msa0880710:three_prime_UTR 25.0%
!!! TTACTGTTTGTTATCATCAA+TGG - chr6_1:27586725-27586744 Msa0880710:three_prime_UTR 25.0%
!!! TACTGTTTGTTATCATCAAT+GGG - chr6_1:27586726-27586745 Msa0880710:three_prime_UTR 25.0%
!!! AATCATTTACCTGCATTTTT+TGG + chr6_1:27586867-27586886 None:intergenic 25.0%
! CAATTAAACAGCTAGTAAAT+TGG + chr6_1:27587220-27587239 None:intergenic 25.0%
! CAATTTACTAGCTGTTTAAT+TGG - chr6_1:27587218-27587237 Msa0880710:CDS 25.0%
! AATCTTACAATACATGTAGA+AGG + chr6_1:27587279-27587298 None:intergenic 25.0%
! TACACACGTATAATTTGAAA+AGG + chr6_1:27587328-27587347 None:intergenic 25.0%
! ATTGAAATTGGCGTTTAATT+TGG - chr6_1:27587844-27587863 Msa0880710:intron 25.0%
!! AAAATTGTTGTTATGGTTGT+AGG - chr6_1:27587889-27587908 Msa0880710:intron 25.0%
! ATTATTGGAACTCTCATTTA+AGG - chr6_1:27587964-27587983 Msa0880710:intron 25.0%
! CAACTAATTCGTTCATATTA+GGG + chr6_1:27588226-27588245 None:intergenic 25.0%
! TCAACTAATTCGTTCATATT+AGG + chr6_1:27588227-27588246 None:intergenic 25.0%
!! AATATTCTAGATCCTGATTT+TGG - chr6_1:27588368-27588387 Msa0880710:intron 25.0%
! AATGATAAAAGCCATTATCT+TGG + chr6_1:27588613-27588632 None:intergenic 25.0%
! CCAGAAAAATACATTACTAT+AGG + chr6_1:27588675-27588694 None:intergenic 25.0%
!! CCTATAGTAATGTATTTTTC+TGG - chr6_1:27588672-27588691 Msa0880710:intron 25.0%
!! TTCCTTTTATGACTATGAAT+TGG + chr6_1:27588842-27588861 None:intergenic 25.0%
!! GAGAAAATTGGTTTGAAGAA+AGG - chr6_1:27586765-27586784 Msa0880710:three_prime_UTR 30.0%
ACTGATTATATCCAAGAACA+TGG - chr6_1:27586819-27586838 Msa0880710:three_prime_UTR 30.0%
!! ATATTAGGTTTGTTGAGATG+TGG - chr6_1:27586971-27586990 Msa0880710:CDS 30.0%
! CTAGCTGTTTAATTGGTAAT+TGG - chr6_1:27587225-27587244 Msa0880710:CDS 30.0%
TGGTTTCAGAATGTTAACAA+AGG + chr6_1:27587367-27587386 None:intergenic 30.0%
! TTTTTGTGAGATGACATTGT+CGG + chr6_1:27587433-27587452 None:intergenic 30.0%
TGAGTTTATCTAGTGACATA+AGG - chr6_1:27587557-27587576 Msa0880710:CDS 30.0%
! AAAGTGTTTGAGAGATCTAA+TGG - chr6_1:27587587-27587606 Msa0880710:CDS 30.0%
CAACAAAAACAACAAGAAAG+AGG - chr6_1:27588115-27588134 Msa0880710:intron 30.0%
! TCTTTTCTTGTATGTAGTGT+TGG + chr6_1:27588158-27588177 None:intergenic 30.0%
AACGAATTAGTTGACACTTT+GGG - chr6_1:27588233-27588252 Msa0880710:intron 30.0%
TCATCATCTAACCATTCATA+TGG + chr6_1:27588260-27588279 None:intergenic 30.0%
TTCAATCCTACAATCAACAA+TGG - chr6_1:27588531-27588550 Msa0880710:CDS 30.0%
TCAATCCTACAATCAACAAT+GGG - chr6_1:27588532-27588551 Msa0880710:CDS 30.0%
ACTTCCAATTACCAAGATAA+TGG - chr6_1:27588599-27588618 Msa0880710:intron 30.0%
! AAAGCCATTATCTTGGTAAT+TGG + chr6_1:27588606-27588625 None:intergenic 30.0%
TATGACTATGAATTGGACTT+GGG + chr6_1:27588835-27588854 None:intergenic 30.0%
TTATGACTATGAATTGGACT+TGG + chr6_1:27588836-27588855 None:intergenic 30.0%
GTCCAATTCATAGTCATAAA+AGG - chr6_1:27588837-27588856 Msa0880710:five_prime_UTR 30.0%
! AAACCAATTTTCTCACAGCA+AGG + chr6_1:27586759-27586778 None:intergenic 35.0%
! TTGGTTTGAAGAAAGGAAGA+TGG - chr6_1:27586772-27586791 Msa0880710:three_prime_UTR 35.0%
TATATCCAAGAACATGGTGA+AGG - chr6_1:27586825-27586844 Msa0880710:three_prime_UTR 35.0%
AGATCTTTGCCAAAAAATGC+AGG - chr6_1:27586855-27586874 Msa0880710:three_prime_UTR 35.0%
TTAAGATCAGATGTGAAGAG+AGG - chr6_1:27587025-27587044 Msa0880710:CDS 35.0%
GACAATGTCATCTCACAAAA+AGG - chr6_1:27587432-27587451 Msa0880710:CDS 35.0%
! ATTGTTGTTATGGTTGTAGG+TGG - chr6_1:27587892-27587911 Msa0880710:intron 35.0%
TTAACAGCAGCTATGTCAAT+TGG + chr6_1:27588035-27588054 None:intergenic 35.0%
AAAGAAAAAGAGCTGCAACA+AGG - chr6_1:27588173-27588192 Msa0880710:intron 35.0%
GAACGAATTAGTTGACACTT+TGG - chr6_1:27588232-27588251 Msa0880710:intron 35.0%
CTAAGTTGCATGTTTGAAAG+TGG - chr6_1:27588290-27588309 Msa0880710:intron 35.0%
GTACTAGTGGGAAATAATGA+TGG - chr6_1:27588392-27588411 Msa0880710:intron 35.0%
CTACCTTCTAAATGCATATC+AGG + chr6_1:27588506-27588525 None:intergenic 35.0%
CCAAGATGTTAATTGCTTCT+GGG - chr6_1:27588574-27588593 Msa0880710:CDS 35.0%
TTGATCCCTTGATTTCATTC+AGG - chr6_1:27588631-27588650 Msa0880710:intron 35.0%
TGATCCCTTGATTTCATTCA+GGG - chr6_1:27588632-27588651 Msa0880710:intron 35.0%
!! TTTAGTTCTTGCTCAACAAG+AGG - chr6_1:27588771-27588790 Msa0880710:CDS 35.0%
! TTAGTTCTTGCTCAACAAGA+GGG - chr6_1:27588772-27588791 Msa0880710:CDS 35.0%
GGCAAATAGTGCATTGTAAT+TGG - chr6_1:27588978-27588997 Msa0880710:five_prime_UTR 35.0%
AGACGTGTGTCTATGTAATA+AGG - chr6_1:27589084-27589103 Msa0880710:five_prime_UTR 35.0%
GCACACTAAGAGAAATGGAA+AGG + chr6_1:27586624-27586643 None:intergenic 40.0%
CACATGCACACTAAGAGAAA+TGG + chr6_1:27586629-27586648 None:intergenic 40.0%
AAGATCCTTCACCATGTTCT+TGG + chr6_1:27586833-27586852 None:intergenic 40.0%
AAGAACATGGTGAAGGATCT+TGG - chr6_1:27586832-27586851 Msa0880710:three_prime_UTR 40.0%
GAAAGAGTTGCAGACTAAGA+TGG - chr6_1:27586993-27587012 Msa0880710:CDS 40.0%
ACAATGATTTCTTCCTCCTG+AGG + chr6_1:27587061-27587080 None:intergenic 40.0%
GTAATAGCTGGACATTTACC+AGG - chr6_1:27587918-27587937 Msa0880710:intron 40.0%
ATCTCATTATCTGTACGTCC+TGG + chr6_1:27587939-27587958 None:intergenic 40.0%
! TTGTTGTTCTGATCTTGCCT+TGG + chr6_1:27588101-27588120 None:intergenic 40.0%
!! ACACTTTGGGACCATATGAA+TGG - chr6_1:27588246-27588265 Msa0880710:intron 40.0%
!! TCCTGATTTTGGTGTACTAG+TGG - chr6_1:27588379-27588398 Msa0880710:intron 40.0%
!! CCTGATTTTGGTGTACTAGT+GGG - chr6_1:27588380-27588399 Msa0880710:intron 40.0%
CTAGTGGGAAATAATGATGG+TGG - chr6_1:27588395-27588414 Msa0880710:intron 40.0%
!! GGAAATAATGATGGTGGTAG+TGG - chr6_1:27588401-27588420 Msa0880710:intron 40.0%
!! AATAATGATGGTGGTAGTGG+TGG - chr6_1:27588404-27588423 Msa0880710:intron 40.0%
! GGTGTTTGGAGTTCATCAAA+TGG - chr6_1:27588425-27588444 Msa0880710:intron 40.0%
! TCATCAAATGGTGCTGAAAG+CGG - chr6_1:27588437-27588456 Msa0880710:intron 40.0%
TGGCCTGATATGCATTTAGA+AGG - chr6_1:27588500-27588519 Msa0880710:CDS 40.0%
! AAGGTCCCATTGTTGATTGT+AGG + chr6_1:27588540-27588559 None:intergenic 40.0%
GCCAAGATGTTAATTGCTTC+TGG - chr6_1:27588573-27588592 Msa0880710:CDS 40.0%
CCCAGAAGCAATTAACATCT+TGG + chr6_1:27588577-27588596 None:intergenic 40.0%
GATCCCTTGATTTCATTCAG+GGG - chr6_1:27588633-27588652 Msa0880710:intron 40.0%
TCTCCCCTGAATGAAATCAA+GGG + chr6_1:27588639-27588658 None:intergenic 40.0%
ATCTCCCCTGAATGAAATCA+AGG + chr6_1:27588640-27588659 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG + chr6_1:27588967-27588986 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG + chr6_1:27588970-27588989 None:intergenic 40.0%
GAAAAGGGCTTGCATTTGCA+TGG + chr6_1:27586585-27586604 None:intergenic 45.0%
! GCTCCTTGCTGTGAGAAAAT+TGG - chr6_1:27586753-27586772 Msa0880710:three_prime_UTR 45.0%
! GTCAAGTTGCATGCTGTTCT+TGG - chr6_1:27587079-27587098 Msa0880710:CDS 45.0%
! TGCATGCTGTTCTTGGTAAC+AGG - chr6_1:27587086-27587105 Msa0880710:CDS 45.0%
! TGCTGTTCTTGGTAACAGGT+AGG - chr6_1:27587090-27587109 Msa0880710:CDS 45.0%
GATGACATTGTCGGCAACAA+AGG + chr6_1:27587424-27587443 None:intergenic 45.0%
TGTAGGTGGTCTGTAATAGC+TGG - chr6_1:27587906-27587925 Msa0880710:intron 45.0%
CCCACTAGTACACCAAAATC+AGG + chr6_1:27588383-27588402 None:intergenic 45.0%
TCAACAAGAGGGTAAGTGTG+TGG - chr6_1:27588783-27588802 Msa0880710:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr6_1:27588950-27588969 None:intergenic 45.0%
!! TTAACATTTATATATATAAA+TGG + chr6_1:27587387-27587406 None:intergenic 5.0%
GGCTTGCATTTGCATGGATG+GGG + chr6_1:27586579-27586598 None:intergenic 50.0%
GGGCTTGCATTTGCATGGAT+GGG + chr6_1:27586580-27586599 None:intergenic 50.0%
AGGGCTTGCATTTGCATGGA+TGG + chr6_1:27586581-27586600 None:intergenic 50.0%
!! AGGAAGATGGACTGCTGAAG+AGG - chr6_1:27586785-27586804 Msa0880710:three_prime_UTR 50.0%
GAGAGGTAACATCACTCCTC+AGG - chr6_1:27587042-27587061 Msa0880710:CDS 50.0%
AGGTAACATCACTCCTCAGG+AGG - chr6_1:27587045-27587064 Msa0880710:CDS 50.0%
TTCTCTTGGAAGCAGCTGCT+AGG + chr6_1:27588058-27588077 None:intergenic 50.0%
TCCAAGAGAAGAGCTGGTAG+AGG - chr6_1:27588068-27588087 Msa0880710:intron 50.0%
TCCTCTACCAGCTCTTCTCT+TGG + chr6_1:27588072-27588091 None:intergenic 50.0%
!! ATGGTGGTAGTGGTGGTGTT+TGG - chr6_1:27588411-27588430 Msa0880710:intron 50.0%
TGGGACCTTTGCGATCAACA+AGG - chr6_1:27588551-27588570 Msa0880710:CDS 50.0%
!! CTTGGCCTTGTTGATCGCAA+AGG + chr6_1:27588559-27588578 None:intergenic 50.0%
AGCCACACCTCCTTGAATTG+TGG - chr6_1:27588957-27588976 Msa0880710:five_prime_UTR 50.0%
TGCCACAATTCAAGGAGGTG+TGG + chr6_1:27588962-27588981 None:intergenic 50.0%
GCTGCTTCCAAGAGAAGAGC+TGG - chr6_1:27588062-27588081 Msa0880710:intron 55.0%
CTGGTAGAGGAGCTGCACCA+AGG - chr6_1:27588081-27588100 Msa0880710:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27586441 27589130 27586441 ID=Msa0880710;Name=Msa0880710
chr6_1 mRNA 27586441 27589130 27586441 ID=Msa0880710-mRNA-1;Parent=Msa0880710;Name=Msa0880710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=303|1|1|1|1|1|3|496|328
chr6_1 exon 27586441 27587660 27586441 ID=Msa0880710-mRNA-1:exon:6705;Parent=Msa0880710-mRNA-1
chr6_1 exon 27588464 27588593 27588464 ID=Msa0880710-mRNA-1:exon:6704;Parent=Msa0880710-mRNA-1
chr6_1 exon 27588695 27589130 27588695 ID=Msa0880710-mRNA-1:exon:6703;Parent=Msa0880710-mRNA-1
chr6_1 five_prime_UTR 27588828 27589130 27588828 ID=Msa0880710-mRNA-1:five_prime_utr;Parent=Msa0880710-mRNA-1
chr6_1 CDS 27588695 27588827 27588695 ID=Msa0880710-mRNA-1:cds;Parent=Msa0880710-mRNA-1
chr6_1 CDS 27588464 27588593 27588464 ID=Msa0880710-mRNA-1:cds;Parent=Msa0880710-mRNA-1
chr6_1 CDS 27586937 27587660 27586937 ID=Msa0880710-mRNA-1:cds;Parent=Msa0880710-mRNA-1
chr6_1 three_prime_UTR 27586441 27586936 27586441 ID=Msa0880710-mRNA-1:three_prime_utr;Parent=Msa0880710-mRNA-1
Gene Sequence

>Msa0880710

ATGGGAAGAGCTCCTTGCTGTGAGAAAATTGGTTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGATTATATCCAAGAACATGGTGAAGGATCTTGGAGATCTTTGCCAAAAAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGCAGACTAAGATGGATAAACTACTTAAGATCAGATGTGAAGAGAGGTAACATCACTCCTCAGGAGGAAGAAATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTAATAGCTGGACATTTACCAGGACGTACAGATAATGAGATAAAAAATTATTGGAACTCTCATTTAAGGAGAAAAATTTACTGTTTCATGAAGTCATTAAATGAGTCATTTTCACCAATTGACATAGCTGCTGTTAACCTAGCAGCTGCTTCCAAGAGAAGAGCTGGTAGAGGAGCTGCACCAAGGCAAGATCAGAACAACAAAAACAACAAGAAAGAGGTTCTTGAAGTTCAATTACCAACACTACATACAAGAAAAGAAAAAGAGCTGCAACAAGGTTATAATAATACTAATAATTCATCATGCCCTAATATGAACGAATTAGTTGACACTTTGGGACCATATGAATGGTTAGATGATGAAATTATTAAACTAAGTTGCATGTTTGAAAGTGGAGTACTTGTTAGTCCAGATCATGAGAATATTAATATTAATGTAACCAATGATGATAATATTCTAGATCCTGATTTTGGTGTACTAGTGGGAAATAATGATGGTGGTAGTGGTGGTGTTTGGAGTTCATCAAATGGTGCTGAAAGCGGAGAGTGTAATTCTTCTGTGAATTCTGTTTATGAATATCAATGGCCTGATATGCATTTAGAAGGTAGTTGTGTTCAATCCTACAATCAACAATGGGACCTTTGCGATCAACAAGGCCAAGATGTTAATTGCTTCTGGGATACTTCCAATTACCAAGATAATGGCTTTTATCATTGA
Protein sequence

>Msa0880710

MGRAPCCEKIGLKKGRWTAEEDKILTDYIQEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESFSPIDIAAVNLAAASKRRAGRGAAPRQDQNNKNNKKEVLEVQLPTLHTRKEKELQQGYNNTNNSSCPNMNELVDTLGPYEWLDDEIIKLSCMFESGVLVSPDHENININVTNDDNILDPDFGVLVGNNDGGSGGVWSSSNGAESGECNSSVNSVYEYQWPDMHLEGSCVQSYNQQWDLCDQQGQDVNCFWDTSNYQDNGFYH*