AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATACTGCAAAATGTTAT+AGG 0.197401 2_3:+36727886 Msa0290080:three_prime_UTR
GGTTGTTGACGGCGGCTATC+TGG 0.236539 2_3:-36726718 None:intergenic
CGATGCTTTGGTTGTGGATT+GGG 0.301945 2_3:-36726680 None:intergenic
AGAAAAGATGGCTGAAAATA+AGG 0.320748 2_3:+36727323 Msa0290080:CDS
TTGGTTGTGGATTGGGGCAC+GGG 0.322906 2_3:-36726673 None:intergenic
TCTTACCGTTTACCAAGATT+TGG 0.337618 2_3:-36726739 None:intergenic
TGAACATAAAAGATGAAATA+AGG 0.380666 2_3:+36727352 Msa0290080:CDS
TGCCAGAGAGAATTAGTATT+AGG 0.384250 2_3:-36728007 None:intergenic
CTCAGAAGAAAAGAAATGTT+TGG 0.401994 2_3:+36727413 Msa0290080:CDS
ACTTCCTCTGGTAGAGAGTC+AGG 0.420896 2_3:+36727978 Msa0290080:three_prime_UTR
AGAAAATGCCGGTGCTTACC+TGG 0.429762 2_3:+36727821 Msa0290080:three_prime_UTR
AACAACCAAATCTTGGTAAA+CGG 0.435907 2_3:+36726734 Msa0290080:CDS
ACGATGCTTTGGTTGTGGAT+TGG 0.437637 2_3:-36726681 None:intergenic
CTTTCTCAGCAACATCCACT+TGG 0.439992 2_3:-36727581 None:intergenic
CGCCGTCAACAACCAAATCT+TGG 0.442182 2_3:+36726727 Msa0290080:CDS
TTTGGTTGTGGATTGGGGCA+CGG 0.458873 2_3:-36726674 None:intergenic
TACCAAGATTTGGTTGTTGA+CGG 0.460348 2_3:-36726729 None:intergenic
GCAAGGGGAGAACGATGCTT+TGG 0.463711 2_3:-36726692 None:intergenic
TGAGAAAGAGGTTAATGATT+CGG 0.466466 2_3:+36727596 Msa0290080:CDS
GGAGAACGATGCTTTGGTTG+TGG 0.467879 2_3:-36726686 None:intergenic
ATTCTCTCTGGCAATGCCAT+TGG 0.477829 2_3:+36728017 Msa0290080:three_prime_UTR
AGGTATTAATCAACTTCCTC+TGG 0.483223 2_3:+36727966 Msa0290080:three_prime_UTR
CGGCGGCTATCTGGAGCGCA+AGG 0.487021 2_3:-36726709 None:intergenic
CACCTAATACTAATTCTCTC+TGG 0.491525 2_3:+36728005 Msa0290080:three_prime_UTR
TGAAAATGAATTGAAACGCT+TGG 0.495842 2_3:+36727554 Msa0290080:CDS
TCTACACATACATGAAGGTA+AGG 0.514287 2_3:-36728128 None:intergenic
TTTCTCAGCAACATCCACTT+GGG 0.524715 2_3:-36727580 None:intergenic
ATTGAAGAAGGGCAAACTCC+AGG 0.545110 2_3:-36727839 None:intergenic
AGTGGATGTTGCTGAGAAAG+AGG 0.547870 2_3:+36727584 Msa0290080:CDS
TGCAGTTGTGCGAGAAAAGA+TGG 0.547960 2_3:+36727311 Msa0290080:CDS
GATGCTTTGGTTGTGGATTG+GGG 0.552578 2_3:-36726679 None:intergenic
GCGGCTATCTGGAGCGCAAG+GGG 0.555407 2_3:-36726707 None:intergenic
GGCAAACTCCAGGTAAGCAC+CGG 0.574528 2_3:-36727829 None:intergenic
GGCGGCTATCTGGAGCGCAA+GGG 0.589265 2_3:-36726708 None:intergenic
ATTTGCTTACTTCTGAGATG+AGG 0.591281 2_3:+36727946 Msa0290080:three_prime_UTR
TTACCTTCATGTATGTGTAG+AGG 0.603404 2_3:+36728130 Msa0290080:three_prime_UTR
CTCTACACAGTGAAAACCAA+TGG 0.611546 2_3:-36728033 None:intergenic
CAAGATTTGGTTGTTGACGG+CGG 0.617980 2_3:-36726726 None:intergenic
ACTCCTCTACACATACATGA+AGG 0.632574 2_3:-36728133 None:intergenic
CTACACATACATGAAGGTAA+GGG 0.633150 2_3:-36728127 None:intergenic
GAAACGCTTGGAAGCCCAAG+TGG 0.646018 2_3:+36727566 Msa0290080:CDS
CTAACCTGACTCTCTACCAG+AGG 0.692712 2_3:-36727982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTATAAATTTCTG+AGG + chr2_3:36727922-36727941 Msa0290080:three_prime_UTR 10.0%
!!! TTTATTTTTATAAATTTCTG+AGG + chr2_3:36727922-36727941 Msa0290080:three_prime_UTR 10.0%
!! AGAAATACTAATAAAATTCA+AGG - chr2_3:36726970-36726989 None:intergenic 15.0%
!! TAAATTATAGTAGTAAAAAG+CGG - chr2_3:36727218-36727237 None:intergenic 15.0%
!! TGAAAATTAATTGTAAGAAT+TGG + chr2_3:36727620-36727639 Msa0290080:intron 15.0%
!! AGAAATACTAATAAAATTCA+AGG - chr2_3:36726970-36726989 None:intergenic 15.0%
!! TAAATTATAGTAGTAAAAAG+CGG - chr2_3:36727218-36727237 None:intergenic 15.0%
!! TGAAAATTAATTGTAAGAAT+TGG + chr2_3:36727620-36727639 Msa0290080:intron 15.0%
!!! TTTTTTGATGATTAAAGTGT+TGG + chr2_3:36726941-36726960 Msa0290080:intron 20.0%
!! TGAACATAAAAGATGAAATA+AGG + chr2_3:36727352-36727371 Msa0290080:CDS 20.0%
!! AAAAGAAAAACTTAAGTTAG+CGG + chr2_3:36727527-36727546 Msa0290080:CDS 20.0%
!! ATTGAATGTTGAAAAAACAT+TGG - chr2_3:36727780-36727799 None:intergenic 20.0%
!! ATTATACTGCAAAATGTTAT+AGG + chr2_3:36727886-36727905 Msa0290080:three_prime_UTR 20.0%
!!! TTTTTTGATGATTAAAGTGT+TGG + chr2_3:36726941-36726960 Msa0290080:intron 20.0%
!! TGAACATAAAAGATGAAATA+AGG + chr2_3:36727352-36727371 Msa0290080:CDS 20.0%
!! AAAAGAAAAACTTAAGTTAG+CGG + chr2_3:36727527-36727546 Msa0290080:CDS 20.0%
!! ATTGAATGTTGAAAAAACAT+TGG - chr2_3:36727780-36727799 None:intergenic 20.0%
!! ATTATACTGCAAAATGTTAT+AGG + chr2_3:36727886-36727905 Msa0290080:three_prime_UTR 20.0%
! GATAGAAGAGTAAATTAATG+CGG - chr2_3:36726805-36726824 None:intergenic 25.0%
! TAGATTTGAGTGAGAAAAAA+TGG + chr2_3:36727267-36727286 Msa0290080:intron 25.0%
! AATTGTAAGAATTGGAAAGT+TGG + chr2_3:36727628-36727647 Msa0290080:intron 25.0%
! CATAAAACTGAAGAAAATGT+AGG - chr2_3:36727715-36727734 None:intergenic 25.0%
!! TATGCTTTTCAATTGAAGAA+GGG - chr2_3:36727853-36727872 None:intergenic 25.0%
!! ATATGCTTTTCAATTGAAGA+AGG - chr2_3:36727854-36727873 None:intergenic 25.0%
! GATAGAAGAGTAAATTAATG+CGG - chr2_3:36726805-36726824 None:intergenic 25.0%
! TAGATTTGAGTGAGAAAAAA+TGG + chr2_3:36727267-36727286 Msa0290080:intron 25.0%
! AATTGTAAGAATTGGAAAGT+TGG + chr2_3:36727628-36727647 Msa0290080:intron 25.0%
! CATAAAACTGAAGAAAATGT+AGG - chr2_3:36727715-36727734 None:intergenic 25.0%
!! TATGCTTTTCAATTGAAGAA+GGG - chr2_3:36727853-36727872 None:intergenic 25.0%
!! ATATGCTTTTCAATTGAAGA+AGG - chr2_3:36727854-36727873 None:intergenic 25.0%
AACAACCAAATCTTGGTAAA+CGG + chr2_3:36726734-36726753 Msa0290080:CDS 30.0%
AAGAAGATGAAGAGAATACA+GGG - chr2_3:36726767-36726786 None:intergenic 30.0%
AAAGAAGATGAAGAGAATAC+AGG - chr2_3:36726768-36726787 None:intergenic 30.0%
AAGAGTAAATTAATGCGGAA+AGG - chr2_3:36726800-36726819 None:intergenic 30.0%
CTAATGAAAGAAATTGAACG+CGG + chr2_3:36726911-36726930 Msa0290080:intron 30.0%
AGAAAAGATGGCTGAAAATA+AGG + chr2_3:36727323-36727342 Msa0290080:CDS 30.0%
CTCAGAAGAAAAGAAATGTT+TGG + chr2_3:36727413-36727432 Msa0290080:CDS 30.0%
TGAAAATGAATTGAAACGCT+TGG + chr2_3:36727554-36727573 Msa0290080:CDS 30.0%
TGAGAAAGAGGTTAATGATT+CGG + chr2_3:36727596-36727615 Msa0290080:CDS 30.0%
AACAACCAAATCTTGGTAAA+CGG + chr2_3:36726734-36726753 Msa0290080:CDS 30.0%
AAGAAGATGAAGAGAATACA+GGG - chr2_3:36726767-36726786 None:intergenic 30.0%
AAAGAAGATGAAGAGAATAC+AGG - chr2_3:36726768-36726787 None:intergenic 30.0%
AAGAGTAAATTAATGCGGAA+AGG - chr2_3:36726800-36726819 None:intergenic 30.0%
CTAATGAAAGAAATTGAACG+CGG + chr2_3:36726911-36726930 Msa0290080:intron 30.0%
AGAAAAGATGGCTGAAAATA+AGG + chr2_3:36727323-36727342 Msa0290080:CDS 30.0%
CTCAGAAGAAAAGAAATGTT+TGG + chr2_3:36727413-36727432 Msa0290080:CDS 30.0%
TGAAAATGAATTGAAACGCT+TGG + chr2_3:36727554-36727573 Msa0290080:CDS 30.0%
TGAGAAAGAGGTTAATGATT+CGG + chr2_3:36727596-36727615 Msa0290080:CDS 30.0%
! TACCAAGATTTGGTTGTTGA+CGG - chr2_3:36726732-36726751 None:intergenic 35.0%
TCTTACCGTTTACCAAGATT+TGG - chr2_3:36726742-36726761 None:intergenic 35.0%
GCGACAACACTAAAGATTTA+CGG + chr2_3:36726848-36726867 Msa0290080:intron 35.0%
TAGTAGTAAAAAGCGGATAG+CGG - chr2_3:36727211-36727230 None:intergenic 35.0%
!!! CTGAGAGCATTTTATTGAAG+TGG - chr2_3:36727398-36727417 None:intergenic 35.0%
TGGAAGAAGAAAAAGAGATC+AGG + chr2_3:36727433-36727452 Msa0290080:CDS 35.0%
GGAAGAAGAAAAAGAGATCA+GGG + chr2_3:36727434-36727453 Msa0290080:CDS 35.0%
! CTTTTAACAGTAGTGCTTTC+TGG - chr2_3:36727512-36727531 None:intergenic 35.0%
AGAAAAACTTAAGTTAGCGG+CGG + chr2_3:36727530-36727549 Msa0290080:CDS 35.0%
ACTGAAGAAAATGTAGGACA+TGG - chr2_3:36727709-36727728 None:intergenic 35.0%
! CAGACTTTTGTAGAAAATGC+CGG + chr2_3:36727810-36727829 Msa0290080:three_prime_UTR 35.0%
!! ATTTGCTTACTTCTGAGATG+AGG + chr2_3:36727946-36727965 Msa0290080:three_prime_UTR 35.0%
AGGTATTAATCAACTTCCTC+TGG + chr2_3:36727966-36727985 Msa0290080:three_prime_UTR 35.0%
CACCTAATACTAATTCTCTC+TGG + chr2_3:36728005-36728024 Msa0290080:three_prime_UTR 35.0%
TGCCAGAGAGAATTAGTATT+AGG - chr2_3:36728010-36728029 None:intergenic 35.0%
CTACACATACATGAAGGTAA+GGG - chr2_3:36728130-36728149 None:intergenic 35.0%
TCTACACATACATGAAGGTA+AGG - chr2_3:36728131-36728150 None:intergenic 35.0%
TTACCTTCATGTATGTGTAG+AGG + chr2_3:36728130-36728149 Msa0290080:three_prime_UTR 35.0%
! TACCAAGATTTGGTTGTTGA+CGG - chr2_3:36726732-36726751 None:intergenic 35.0%
TCTTACCGTTTACCAAGATT+TGG - chr2_3:36726742-36726761 None:intergenic 35.0%
GCGACAACACTAAAGATTTA+CGG + chr2_3:36726848-36726867 Msa0290080:intron 35.0%
TAGTAGTAAAAAGCGGATAG+CGG - chr2_3:36727211-36727230 None:intergenic 35.0%
!!! CTGAGAGCATTTTATTGAAG+TGG - chr2_3:36727398-36727417 None:intergenic 35.0%
TGGAAGAAGAAAAAGAGATC+AGG + chr2_3:36727433-36727452 Msa0290080:CDS 35.0%
GGAAGAAGAAAAAGAGATCA+GGG + chr2_3:36727434-36727453 Msa0290080:CDS 35.0%
! CTTTTAACAGTAGTGCTTTC+TGG - chr2_3:36727512-36727531 None:intergenic 35.0%
AGAAAAACTTAAGTTAGCGG+CGG + chr2_3:36727530-36727549 Msa0290080:CDS 35.0%
ACTGAAGAAAATGTAGGACA+TGG - chr2_3:36727709-36727728 None:intergenic 35.0%
! CAGACTTTTGTAGAAAATGC+CGG + chr2_3:36727810-36727829 Msa0290080:three_prime_UTR 35.0%
!! ATTTGCTTACTTCTGAGATG+AGG + chr2_3:36727946-36727965 Msa0290080:three_prime_UTR 35.0%
AGGTATTAATCAACTTCCTC+TGG + chr2_3:36727966-36727985 Msa0290080:three_prime_UTR 35.0%
CACCTAATACTAATTCTCTC+TGG + chr2_3:36728005-36728024 Msa0290080:three_prime_UTR 35.0%
TGCCAGAGAGAATTAGTATT+AGG - chr2_3:36728010-36728029 None:intergenic 35.0%
CTACACATACATGAAGGTAA+GGG - chr2_3:36728130-36728149 None:intergenic 35.0%
TCTACACATACATGAAGGTA+AGG - chr2_3:36728131-36728150 None:intergenic 35.0%
TTACCTTCATGTATGTGTAG+AGG + chr2_3:36728130-36728149 Msa0290080:three_prime_UTR 35.0%
ATGTTGTCAAAGAGGAAAGG+CGG - chr2_3:36727175-36727194 None:intergenic 40.0%
CCTATGTTGTCAAAGAGGAA+AGG - chr2_3:36727178-36727197 None:intergenic 40.0%
CCTTTCCTCTTTGACAACAT+AGG + chr2_3:36727175-36727194 Msa0290080:intron 40.0%
GGCTGAAAATATTATGACCC+AGG + chr2_3:36727288-36727307 Msa0290080:intron 40.0%
TTTCTCAGCAACATCCACTT+GGG - chr2_3:36727583-36727602 None:intergenic 40.0%
CTCTACACAGTGAAAACCAA+TGG - chr2_3:36728036-36728055 None:intergenic 40.0%
ACTCCTCTACACATACATGA+AGG - chr2_3:36728136-36728155 None:intergenic 40.0%
ATGTTGTCAAAGAGGAAAGG+CGG - chr2_3:36727175-36727194 None:intergenic 40.0%
CCTATGTTGTCAAAGAGGAA+AGG - chr2_3:36727178-36727197 None:intergenic 40.0%
CCTTTCCTCTTTGACAACAT+AGG + chr2_3:36727175-36727194 Msa0290080:intron 40.0%
GGCTGAAAATATTATGACCC+AGG + chr2_3:36727288-36727307 Msa0290080:intron 40.0%
TTTCTCAGCAACATCCACTT+GGG - chr2_3:36727583-36727602 None:intergenic 40.0%
CTCTACACAGTGAAAACCAA+TGG - chr2_3:36728036-36728055 None:intergenic 40.0%
ACTCCTCTACACATACATGA+AGG - chr2_3:36728136-36728155 None:intergenic 40.0%
! GATGCTTTGGTTGTGGATTG+GGG - chr2_3:36726682-36726701 None:intergenic 45.0%
CGATGCTTTGGTTGTGGATT+GGG - chr2_3:36726683-36726702 None:intergenic 45.0%
ACGATGCTTTGGTTGTGGAT+TGG - chr2_3:36726684-36726703 None:intergenic 45.0%
! CAAGATTTGGTTGTTGACGG+CGG - chr2_3:36726729-36726748 None:intergenic 45.0%
GAATACATCCGCCATGATTG+CGG - chr2_3:36726892-36726911 None:intergenic 45.0%
!!! TACCGCGTGCGTCAATTTTT+TGG + chr2_3:36727139-36727158 Msa0290080:intron 45.0%
!!! ACCGCGTGCGTCAATTTTTT+GGG + chr2_3:36727140-36727159 Msa0290080:intron 45.0%
AGCAGCCTATGTTGTCAAAG+AGG - chr2_3:36727183-36727202 None:intergenic 45.0%
TGCAGTTGTGCGAGAAAAGA+TGG + chr2_3:36727311-36727330 Msa0290080:CDS 45.0%
CTTTCTCAGCAACATCCACT+TGG - chr2_3:36727584-36727603 None:intergenic 45.0%
AGTGGATGTTGCTGAGAAAG+AGG + chr2_3:36727584-36727603 Msa0290080:CDS 45.0%
ATTGAAGAAGGGCAAACTCC+AGG - chr2_3:36727842-36727861 None:intergenic 45.0%
ATTCTCTCTGGCAATGCCAT+TGG + chr2_3:36728017-36728036 Msa0290080:three_prime_UTR 45.0%
! GATGCTTTGGTTGTGGATTG+GGG - chr2_3:36726682-36726701 None:intergenic 45.0%
CGATGCTTTGGTTGTGGATT+GGG - chr2_3:36726683-36726702 None:intergenic 45.0%
ACGATGCTTTGGTTGTGGAT+TGG - chr2_3:36726684-36726703 None:intergenic 45.0%
! CAAGATTTGGTTGTTGACGG+CGG - chr2_3:36726729-36726748 None:intergenic 45.0%
GAATACATCCGCCATGATTG+CGG - chr2_3:36726892-36726911 None:intergenic 45.0%
!!! TACCGCGTGCGTCAATTTTT+TGG + chr2_3:36727139-36727158 Msa0290080:intron 45.0%
!!! ACCGCGTGCGTCAATTTTTT+GGG + chr2_3:36727140-36727159 Msa0290080:intron 45.0%
AGCAGCCTATGTTGTCAAAG+AGG - chr2_3:36727183-36727202 None:intergenic 45.0%
TGCAGTTGTGCGAGAAAAGA+TGG + chr2_3:36727311-36727330 Msa0290080:CDS 45.0%
CTTTCTCAGCAACATCCACT+TGG - chr2_3:36727584-36727603 None:intergenic 45.0%
AGTGGATGTTGCTGAGAAAG+AGG + chr2_3:36727584-36727603 Msa0290080:CDS 45.0%
ATTGAAGAAGGGCAAACTCC+AGG - chr2_3:36727842-36727861 None:intergenic 45.0%
ATTCTCTCTGGCAATGCCAT+TGG + chr2_3:36728017-36728036 Msa0290080:three_prime_UTR 45.0%
!! TTTGGTTGTGGATTGGGGCA+CGG - chr2_3:36726677-36726696 None:intergenic 50.0%
GGAGAACGATGCTTTGGTTG+TGG - chr2_3:36726689-36726708 None:intergenic 50.0%
CGCCGTCAACAACCAAATCT+TGG + chr2_3:36726727-36726746 Msa0290080:CDS 50.0%
TTCACTCACCACCGCAATCA+TGG + chr2_3:36726878-36726897 Msa0290080:intron 50.0%
CCCCAAAAAATTGACGCACG+CGG - chr2_3:36727144-36727163 None:intergenic 50.0%
!!! CCGCGTGCGTCAATTTTTTG+GGG + chr2_3:36727141-36727160 Msa0290080:intron 50.0%
!!! CGTGCGTCAATTTTTTGGGG+TGG + chr2_3:36727144-36727163 Msa0290080:intron 50.0%
TTTCTCGCACAACTGCACCT+GGG - chr2_3:36727308-36727327 None:intergenic 50.0%
! TTTTCTCGCACAACTGCACC+TGG - chr2_3:36727309-36727328 None:intergenic 50.0%
AGAAAATGCCGGTGCTTACC+TGG + chr2_3:36727821-36727840 Msa0290080:three_prime_UTR 50.0%
ACTTCCTCTGGTAGAGAGTC+AGG + chr2_3:36727978-36727997 Msa0290080:three_prime_UTR 50.0%
CTAACCTGACTCTCTACCAG+AGG - chr2_3:36727985-36728004 None:intergenic 50.0%
!! TTTGGTTGTGGATTGGGGCA+CGG - chr2_3:36726677-36726696 None:intergenic 50.0%
GGAGAACGATGCTTTGGTTG+TGG - chr2_3:36726689-36726708 None:intergenic 50.0%
CGCCGTCAACAACCAAATCT+TGG + chr2_3:36726727-36726746 Msa0290080:CDS 50.0%
TTCACTCACCACCGCAATCA+TGG + chr2_3:36726878-36726897 Msa0290080:intron 50.0%
CCCCAAAAAATTGACGCACG+CGG - chr2_3:36727144-36727163 None:intergenic 50.0%
!!! CCGCGTGCGTCAATTTTTTG+GGG + chr2_3:36727141-36727160 Msa0290080:intron 50.0%
!!! CGTGCGTCAATTTTTTGGGG+TGG + chr2_3:36727144-36727163 Msa0290080:intron 50.0%
TTTCTCGCACAACTGCACCT+GGG - chr2_3:36727308-36727327 None:intergenic 50.0%
! TTTTCTCGCACAACTGCACC+TGG - chr2_3:36727309-36727328 None:intergenic 50.0%
AGAAAATGCCGGTGCTTACC+TGG + chr2_3:36727821-36727840 Msa0290080:three_prime_UTR 50.0%
ACTTCCTCTGGTAGAGAGTC+AGG + chr2_3:36727978-36727997 Msa0290080:three_prime_UTR 50.0%
CTAACCTGACTCTCTACCAG+AGG - chr2_3:36727985-36728004 None:intergenic 50.0%
!! TTGGTTGTGGATTGGGGCAC+GGG - chr2_3:36726676-36726695 None:intergenic 55.0%
GCAAGGGGAGAACGATGCTT+TGG - chr2_3:36726695-36726714 None:intergenic 55.0%
ACTCACCACCGCAATCATGG+CGG + chr2_3:36726881-36726900 Msa0290080:intron 55.0%
TACATCCGCCATGATTGCGG+TGG - chr2_3:36726889-36726908 None:intergenic 55.0%
AATTGACGCACGCGGTAAGC+AGG - chr2_3:36727136-36727155 None:intergenic 55.0%
GAAACGCTTGGAAGCCCAAG+TGG + chr2_3:36727566-36727585 Msa0290080:CDS 55.0%
GGCAAACTCCAGGTAAGCAC+CGG - chr2_3:36727832-36727851 None:intergenic 55.0%
!! TTGGTTGTGGATTGGGGCAC+GGG - chr2_3:36726676-36726695 None:intergenic 55.0%
GCAAGGGGAGAACGATGCTT+TGG - chr2_3:36726695-36726714 None:intergenic 55.0%
ACTCACCACCGCAATCATGG+CGG + chr2_3:36726881-36726900 Msa0290080:intron 55.0%
TACATCCGCCATGATTGCGG+TGG - chr2_3:36726889-36726908 None:intergenic 55.0%
AATTGACGCACGCGGTAAGC+AGG - chr2_3:36727136-36727155 None:intergenic 55.0%
GAAACGCTTGGAAGCCCAAG+TGG + chr2_3:36727566-36727585 Msa0290080:CDS 55.0%
GGCAAACTCCAGGTAAGCAC+CGG - chr2_3:36727832-36727851 None:intergenic 55.0%
GGTTGTTGACGGCGGCTATC+TGG - chr2_3:36726721-36726740 None:intergenic 60.0%
GTCAAAGAGGAAAGGCGGCG+CGG - chr2_3:36727170-36727189 None:intergenic 60.0%
GGTTGTTGACGGCGGCTATC+TGG - chr2_3:36726721-36726740 None:intergenic 60.0%
GTCAAAGAGGAAAGGCGGCG+CGG - chr2_3:36727170-36727189 None:intergenic 60.0%
! GCGGCTATCTGGAGCGCAAG+GGG - chr2_3:36726710-36726729 None:intergenic 65.0%
! GGCGGCTATCTGGAGCGCAA+GGG - chr2_3:36726711-36726730 None:intergenic 65.0%
! GCGGCTATCTGGAGCGCAAG+GGG - chr2_3:36726710-36726729 None:intergenic 65.0%
! GGCGGCTATCTGGAGCGCAA+GGG - chr2_3:36726711-36726730 None:intergenic 65.0%
! CGGCGGCTATCTGGAGCGCA+AGG - chr2_3:36726712-36726731 None:intergenic 70.0%
! CGGCGGCTATCTGGAGCGCA+AGG - chr2_3:36726712-36726731 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 36726668 36728177 36726668 ID=Msa0290080;Name=Msa0290080
chr2_3 mRNA 36726668 36728177 36726668 ID=Msa0290080-mRNA-1;Parent=Msa0290080;Name=Msa0290080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|1|1|0.5|0.33|3|452|135
chr2_3 exon 36726668 36726755 36726668 ID=Msa0290080-mRNA-1:exon:12024;Parent=Msa0290080-mRNA-1
chr2_3 exon 36727310 36727631 36727310 ID=Msa0290080-mRNA-1:exon:12025;Parent=Msa0290080-mRNA-1
chr2_3 exon 36727728 36728177 36727728 ID=Msa0290080-mRNA-1:exon:12026;Parent=Msa0290080-mRNA-1
chr2_3 CDS 36726668 36726755 36726668 ID=Msa0290080-mRNA-1:cds;Parent=Msa0290080-mRNA-1
chr2_3 CDS 36727310 36727629 36727310 ID=Msa0290080-mRNA-1:cds;Parent=Msa0290080-mRNA-1
chr2_3 three_prime_UTR 36727630 36727631 36727630 ID=Msa0290080-mRNA-1:three_prime_utr;Parent=Msa0290080-mRNA-1
chr2_3 three_prime_UTR 36727728 36728177 36727728 ID=Msa0290080-mRNA-1:three_prime_utr;Parent=Msa0290080-mRNA-1
Gene Sequence

>Msa0290080

TTTTGCCCGTGCCCCAATCCACAACCAAAGCATCGTTCTCCCCTTGCGCTCCAGATAGCCGCCGTCAACAACCAAATCTTGGTAAACGGTGCAGTTGTGCGAGAAAAGATGGCTGAAAATAAGGAAGTGCTGAACATAAAAGATGAAATAAGGAAAATCTGCGAATGTATTGACCACTTCAATAAAATGCTCTCAGAAGAAAAGAAATGTTTGGAAGAAGAAAAAGAGATCAGGGACAAGATTAACATCAATGATACAATTGAAATTATCGAAGAACTTATTAGCGACCAGAAAGCACTACTGTTAAAAGAAAAACTTAAGTTAGCGGCGGCTGAAAATGAATTGAAACGCTTGGAAGCCCAAGTGGATGTTGCTGAGAAAGAGGTTAATGATTCGGCTGAAAATTAA
Protein sequence

>Msa0290080

FCPCPNPQPKHRSPLALQIAAVNNQILVNGAVVREKMAENKEVLNIKDEIRKICECIDHFNKMLSEEKKCLEEEKEIRDKININDTIEIIEELISDQKALLLKEKLKLAAAENELKRLEAQVDVAEKEVNDSAEN*