AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842830 MtrunA17_Chr5g0413401 100.000 71 0 0 1 71 1 71 6.25e-50 150
Msa0842830 MtrunA17_Chr4g0038621 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0842830 MtrunA17_Chr5g0413391 77.966 59 13 0 13 71 38 96 6.75e-31 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842830 AT1G61700.1 88.732 71 8 0 1 71 1 71 1.43e-44 137
Msa0842830 AT1G11475.1 89.855 69 7 0 1 69 1 69 1.27e-42 132

Find 38 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGGATAATCAAATCATTT+TGG 0.233546 5_4:-20217465 Msa0842830:three_prime_UTR
AGTTCTTAAGACTCCTTAAT+TGG 0.263353 5_4:+20217788 None:intergenic
TGCTTGCTAGAACAATTTAA+AGG 0.276326 5_4:+20217691 None:intergenic
GAAAAGCATGAAGCCAATTA+AGG 0.319569 5_4:-20217801 Msa0842830:exon
AGAGATGCACTGGATGCTTT+GGG 0.324706 5_4:-20217993 Msa0842830:CDS
CAAAATCGTTATTTAGCGTT+TGG 0.346017 5_4:+20221176 None:intergenic
TAGAGATGCACTGGATGCTT+TGG 0.346976 5_4:-20217994 Msa0842830:CDS
GTTTCTTCTAATTAGGTCAT+TGG 0.370379 5_4:-20220938 Msa0842830:intron
AGCACACAACTGACACATTT+CGG 0.382215 5_4:+20217757 None:intergenic
ATTAGGTCATTGGAAACAAA+TGG 0.383611 5_4:-20220928 Msa0842830:intron
CTAGAACAATTTAAAGGAAA+AGG 0.409796 5_4:+20217697 None:intergenic
GCATACGCCTGCAGCAATAT+CGG 0.413628 5_4:+20217964 None:intergenic
AATTCAGTAGCTTCTCGATA+AGG 0.428935 5_4:+20217925 None:intergenic
CCGCAGGTGAAACAACGAAC+TGG 0.441163 5_4:+20221103 None:intergenic
CAGAATTTATACTAATGCTT+AGG 0.464414 5_4:-20217576 Msa0842830:three_prime_UTR
GGTTGGTCCGATATTGCTGC+AGG 0.484942 5_4:-20217971 Msa0842830:CDS
CTTCAAGCTGATTACACTGA+AGG 0.490470 5_4:-20220887 Msa0842830:CDS
TGCACTGGATGCTTTGGGGT+TGG 0.493715 5_4:-20217988 Msa0842830:CDS
TTAGGTCATTGGAAACAAAT+GGG 0.513383 5_4:-20220927 Msa0842830:intron
CGCAGGTGAAACAACGAACT+GGG 0.523249 5_4:+20221104 None:intergenic
TTCAAGCTGATTACACTGAA+GGG 0.534819 5_4:-20220886 Msa0842830:intron
AGACAAAACTGTAGAATGAC+AGG 0.540274 5_4:-20217631 Msa0842830:three_prime_UTR
AAGATTAGAAACCTTTCCGC+AGG 0.548491 5_4:+20221087 None:intergenic
CATAACATGCAGAGTATGCA+AGG 0.559990 5_4:+20217543 None:intergenic
GATTGATTATAGAGATGCAC+TGG 0.568145 5_4:-20218003 Msa0842830:intron
TCGTTGTTTCACCTGCGGAA+AGG 0.581187 5_4:-20221098 Msa0842830:intron
TGACCAACAATATAAACACT+TGG 0.599680 5_4:+20217415 None:intergenic
CCAGTTCGTTGTTTCACCTG+CGG 0.606400 5_4:-20221103 Msa0842830:CDS
GCTTCTCGATAAGGTCAACA+TGG 0.614974 5_4:+20217934 None:intergenic
GTAAATAATCCCATAACCAG+AGG 0.642019 5_4:+20217442 None:intergenic
TCAGTTGTGTGCTAGTCCTG+TGG 0.647443 5_4:-20217747 Msa0842830:three_prime_UTR
GAGATGCACTGGATGCTTTG+GGG 0.651978 5_4:-20217992 Msa0842830:CDS
AAGGTTTCTACTGTTGTGCG+CGG 0.659133 5_4:-20221152 Msa0842830:five_prime_UTR
AATCAGCTTGAAGAAAGTCA+AGG 0.662224 5_4:+20220897 None:intergenic
TGTGCGCGGCGTGAGCAGAG+AGG 0.679869 5_4:-20221138 Msa0842830:five_prime_UTR
CTTCTCGATAAGGTCAACAT+GGG 0.682743 5_4:+20217935 None:intergenic
ATGTGTGTAGTGATAACTGA+GGG 0.695248 5_4:-20217483 Msa0842830:three_prime_UTR
AATGTGTGTAGTGATAACTG+AGG 0.776507 5_4:-20217484 Msa0842830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAACTTTTTTTTTTTTTTT+AGG - chr5_4:20218132-20218151 Msa0842830:intron 10.0%
!! GTATTTATTATTTAACATAA+TGG - chr5_4:20220579-20220598 Msa0842830:intron 10.0%
!!! TTTTAACGATTTTGAAATTT+AGG - chr5_4:20217615-20217634 Msa0842830:three_prime_UTR 15.0%
!!! TTTAACGATTTTGAAATTTA+GGG - chr5_4:20217616-20217635 Msa0842830:three_prime_UTR 15.0%
!!! ACTTTTTTTTTTTTTTTAGG+TGG - chr5_4:20218135-20218154 Msa0842830:intron 15.0%
!! GATTTAATTATAGGAATTAT+GGG + chr5_4:20219344-20219363 None:intergenic 15.0%
!! TGATTTAATTATAGGAATTA+TGG + chr5_4:20219345-20219364 None:intergenic 15.0%
!! ACTGTTAATGATTTAATTAT+AGG + chr5_4:20219353-20219372 None:intergenic 15.0%
!! AAACAAATAGTAAAAGATAA+TGG + chr5_4:20219818-20219837 None:intergenic 15.0%
!!! TATTACAAAATGCAATTTTA+AGG + chr5_4:20219928-20219947 None:intergenic 15.0%
!!! ATCTTTTCTTTAGTTTAATA+TGG - chr5_4:20220145-20220164 Msa0842830:intron 15.0%
!! TTTATTATTTAACATAATGG+TGG - chr5_4:20220582-20220601 Msa0842830:intron 15.0%
!! AAAAATAAAAAATTGACATG+TGG + chr5_4:20220886-20220905 None:intergenic 15.0%
!!! ACATGTCAATTTTTTATTTT+TGG - chr5_4:20220885-20220904 Msa0842830:intron 15.0%
!!! CATGTCAATTTTTTATTTTT+GGG - chr5_4:20220886-20220905 Msa0842830:intron 15.0%
!! AAGAGAAAGCAATTAAATTA+GGG + chr5_4:20217753-20217772 None:intergenic 20.0%
!!! GATATTTGTAAAACCATTTT+GGG + chr5_4:20218395-20218414 None:intergenic 20.0%
!!! TGATATTTGTAAAACCATTT+TGG + chr5_4:20218396-20218415 None:intergenic 20.0%
!! TAAGTCATAAATATAATTGC+TGG - chr5_4:20218553-20218572 Msa0842830:intron 20.0%
!!! ACAATTTTTTTTTGTTATCG+TGG + chr5_4:20218647-20218666 None:intergenic 20.0%
!! CGATAACAAAAAAAAATTGT+CGG - chr5_4:20218647-20218666 Msa0842830:intron 20.0%
!! GATAACAAAAAAAAATTGTC+GGG - chr5_4:20218648-20218667 Msa0842830:intron 20.0%
!!! ACAGTTTTAAGATTAAACAA+TGG - chr5_4:20218722-20218741 Msa0842830:intron 20.0%
!!! TTCATTTTGATCTTAAACTA+TGG + chr5_4:20218797-20218816 None:intergenic 20.0%
!! TATGAATTTCCTGTATTTAA+AGG + chr5_4:20219257-20219276 None:intergenic 20.0%
!! GGAGATTACAAATTTATATT+GGG + chr5_4:20219323-20219342 None:intergenic 20.0%
!! AAAAAAGTTGTGAAACTAAA+GGG + chr5_4:20219788-20219807 None:intergenic 20.0%
!! AAAAAAAGTTGTGAAACTAA+AGG + chr5_4:20219789-20219808 None:intergenic 20.0%
!!! TAGTTTCACAACTTTTTTTT+TGG - chr5_4:20219790-20219809 Msa0842830:intron 20.0%
!!! TATCTTTTACTATTTGTTTC+CGG - chr5_4:20219819-20219838 Msa0842830:intron 20.0%
!! TTGTTTATTAACTTATCGAA+AGG - chr5_4:20219982-20220001 Msa0842830:intron 20.0%
!! CTTAAGTTATAGTTGTAATT+TGG - chr5_4:20220072-20220091 Msa0842830:intron 20.0%
!!! GCATTTTTAAGATTAAACAA+TGG - chr5_4:20220352-20220371 Msa0842830:intron 20.0%
!!! TGTAATGGTAACTTTTAAAA+AGG + chr5_4:20220411-20220430 None:intergenic 20.0%
!!! ATGACAGGTTTTTATAAAAA+CGG - chr5_4:20220991-20221010 Msa0842830:intron 20.0%
!!! TTGACTTGTTTCTTCTAATT+AGG - chr5_4:20217662-20217681 Msa0842830:three_prime_UTR 25.0%
! GAAGAGAAAGCAATTAAATT+AGG + chr5_4:20217754-20217773 None:intergenic 25.0%
!!! ATAGCTATTTTCACAGAAAT+AGG + chr5_4:20217776-20217795 None:intergenic 25.0%
!! ATTTGTTACCTATATCTGTT+TGG - chr5_4:20217814-20217833 Msa0842830:intron 25.0%
! AATTAAGTGCTTATAGCATA+AGG - chr5_4:20217848-20217867 Msa0842830:intron 25.0%
!! TTTTGTCATATAAGTGCTTA+TGG - chr5_4:20217871-20217890 Msa0842830:intron 25.0%
! ATAAGCACGTAAGATTATTT+GGG + chr5_4:20218064-20218083 None:intergenic 25.0%
! TGTAAAACTAATAACCTGTT+TGG + chr5_4:20218115-20218134 None:intergenic 25.0%
!! TTTTGTACTAAATATGTCTC+TGG - chr5_4:20218163-20218182 Msa0842830:intron 25.0%
!! TGATATTTGTACAACCATTT+TGG - chr5_4:20218310-20218329 Msa0842830:intron 25.0%
!! GATATTTGTACAACCATTTT+GGG - chr5_4:20218311-20218330 Msa0842830:intron 25.0%
! ATTACACAAATGCAATTCTA+AGG + chr5_4:20218428-20218447 None:intergenic 25.0%
!!! TTTGTCTGTTTTGAAATAGT+TGG - chr5_4:20218491-20218510 Msa0842830:intron 25.0%
!!! ATTTTTTTTTGTTATCGTGG+TGG + chr5_4:20218644-20218663 None:intergenic 25.0%
!!! CTGTTCTAAAATCTAACAAT+TGG + chr5_4:20218958-20218977 None:intergenic 25.0%
!!! CAATTGTTAGATTTTAGAAC+AGG - chr5_4:20218956-20218975 Msa0842830:intron 25.0%
! TGTATTTAAAGGTTGTTAGA+AGG + chr5_4:20219246-20219265 None:intergenic 25.0%
! TTCTAACAACCTTTAAATAC+AGG - chr5_4:20219245-20219264 Msa0842830:intron 25.0%
! GGGAGATTACAAATTTATAT+TGG + chr5_4:20219324-20219343 None:intergenic 25.0%
! TCATTAACAGTCATAACTAT+AGG - chr5_4:20219362-20219381 Msa0842830:intron 25.0%
! GGAATTCTACAATAATAAAG+AGG - chr5_4:20219383-20219402 Msa0842830:intron 25.0%
! ATCTATTCAGATAAATGAAC+AGG + chr5_4:20219429-20219448 None:intergenic 25.0%
! GCTGAAATAATTATGATACT+TGG - chr5_4:20219460-20219479 Msa0842830:intron 25.0%
! ATTAATGTCTTAAGTGCTTA+TGG - chr5_4:20219527-20219546 Msa0842830:intron 25.0%
! ATAAGTCTATTCTGTTTCAA+TGG - chr5_4:20219860-20219879 Msa0842830:intron 25.0%
! ATCTCTTCAGAAGTTATTAT+TGG - chr5_4:20220033-20220052 Msa0842830:intron 25.0%
!! TTCATCTCTAAAGGAATATA+AGG - chr5_4:20220445-20220464 Msa0842830:intron 25.0%
! AATCATTGTGTATATACTAC+AGG - chr5_4:20220468-20220487 Msa0842830:intron 25.0%
! ATCATTGTGTATATACTACA+GGG - chr5_4:20220469-20220488 Msa0842830:intron 25.0%
! GTAATGATCATACATTCATT+TGG - chr5_4:20220772-20220791 Msa0842830:intron 25.0%
! CTAGAACAATTTAAAGGAAA+AGG + chr5_4:20220913-20220932 None:intergenic 25.0%
!! TGACAGGTTTTTATAAAAAC+GGG - chr5_4:20220992-20221011 Msa0842830:intron 25.0%
! CAGAATTTATACTAATGCTT+AGG - chr5_4:20221031-20221050 Msa0842830:intron 25.0%
CAAAATCGTTATTTAGCGTT+TGG + chr5_4:20217434-20217453 None:intergenic 30.0%
! CGCTAAATAACGATTTTGAA+AGG - chr5_4:20217436-20217455 Msa0842830:three_prime_UTR 30.0%
GTTTCTTCTAATTAGGTCAT+TGG - chr5_4:20217669-20217688 Msa0842830:three_prime_UTR 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr5_4:20217679-20217698 Msa0842830:three_prime_UTR 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr5_4:20217680-20217699 Msa0842830:three_prime_UTR 30.0%
CTGTATATCCAAACAGATAT+AGG + chr5_4:20217825-20217844 None:intergenic 30.0%
ATATAAGTGCTTATGGCATA+AGG - chr5_4:20217878-20217897 Msa0842830:intron 30.0%
ATTTATCTCCATAAACTCCA+CGG + chr5_4:20218005-20218024 None:intergenic 30.0%
CATAAGCACGTAAGATTATT+TGG + chr5_4:20218065-20218084 None:intergenic 30.0%
AACTAATAACCTGTTTGGAT+AGG + chr5_4:20218110-20218129 None:intergenic 30.0%
ACTAATCAAGCTACTACATA+CGG + chr5_4:20218230-20218249 None:intergenic 30.0%
CATAGAACAACATAGAAAAG+CGG + chr5_4:20218255-20218274 None:intergenic 30.0%
ACTTCAATATTGCACAACAA+TGG + chr5_4:20218517-20218536 None:intergenic 30.0%
ATATTGAAGTTGTAACCCAT+TGG - chr5_4:20218527-20218546 Msa0842830:intron 30.0%
ATTTATGACTTACGACCAAT+GGG + chr5_4:20218545-20218564 None:intergenic 30.0%
TATTTATGACTTACGACCAA+TGG + chr5_4:20218546-20218565 None:intergenic 30.0%
TGGAGTTAATGATACTGAAA+AGG + chr5_4:20218624-20218643 None:intergenic 30.0%
!!! CTACACCAAGTTTTTTTCTA+CGG + chr5_4:20218674-20218693 None:intergenic 30.0%
!! CTGTTCTAAAATCCAACAAT+TGG - chr5_4:20218862-20218881 Msa0842830:intron 30.0%
TTGGGCTGTTAGAAATTTAT+AGG + chr5_4:20219305-20219324 None:intergenic 30.0%
ATTAACTTATCGAAAGGATG+TGG - chr5_4:20219988-20220007 Msa0842830:intron 30.0%
TTAACTTATCGAAAGGATGT+GGG - chr5_4:20219989-20220008 Msa0842830:intron 30.0%
!! ATTATTGGCTTATAACTCAG+CGG - chr5_4:20220048-20220067 Msa0842830:intron 30.0%
TGCTACATACATTATTTGAG+TGG - chr5_4:20220096-20220115 Msa0842830:intron 30.0%
TTTAAATGAGCTGATAACCT+AGG - chr5_4:20220221-20220240 Msa0842830:intron 30.0%
TTAAATGAGCTGATAACCTA+GGG - chr5_4:20220222-20220241 Msa0842830:intron 30.0%
! CTTTTTAGACATGAGAATTG+GGG + chr5_4:20220253-20220272 None:intergenic 30.0%
! GCTTTTTAGACATGAGAATT+GGG + chr5_4:20220254-20220273 None:intergenic 30.0%
! AGCTTTTTAGACATGAGAAT+TGG + chr5_4:20220255-20220274 None:intergenic 30.0%
! CAACTACGAAAAAACTTGTT+TGG - chr5_4:20220288-20220307 Msa0842830:intron 30.0%
AGTTGGGTATAACAATGTAA+TGG + chr5_4:20220426-20220445 None:intergenic 30.0%
! ATTCCTTTAGAGATGAAGTT+GGG + chr5_4:20220442-20220461 None:intergenic 30.0%
! TATTCCTTTAGAGATGAAGT+TGG + chr5_4:20220443-20220462 None:intergenic 30.0%
GTATATACTACAGGGATATT+AGG - chr5_4:20220477-20220496 Msa0842830:intron 30.0%
!! GCATTTTAATGTCATTCTCT+TGG - chr5_4:20220533-20220552 Msa0842830:intron 30.0%
! TGTCAATTTTCTATCTCACT+GGG - chr5_4:20220746-20220765 Msa0842830:intron 30.0%
AGTTCTTAAGACTCCTTAAT+TGG + chr5_4:20220822-20220841 None:intergenic 30.0%
! TGCTTGCTAGAACAATTTAA+AGG + chr5_4:20220919-20220938 None:intergenic 30.0%
! GAGGGATAATCAAATCATTT+TGG - chr5_4:20221142-20221161 Msa0842830:five_prime_UTR 30.0%
AATCAGCTTGAAGAAAGTCA+AGG + chr5_4:20217713-20217732 None:intergenic 35.0%
TTCAAGCTGATTACACTGAA+GGG - chr5_4:20217721-20217740 Msa0842830:three_prime_UTR 35.0%
! TGTTTTCATAAGTTATCCCG+TGG - chr5_4:20217985-20218004 Msa0842830:CDS 35.0%
TTTATCTCCATAAACTCCAC+GGG + chr5_4:20218004-20218023 None:intergenic 35.0%
GCTAGTAGTTAATCTCTAAC+AGG - chr5_4:20218084-20218103 Msa0842830:intron 35.0%
AAGCTACTACATACGGAAAT+TGG + chr5_4:20218223-20218242 None:intergenic 35.0%
TTCTATGAACACATAACCAG+TGG - chr5_4:20218268-20218287 Msa0842830:intron 35.0%
CTCTTAAGATATACATCCAC+TGG + chr5_4:20218287-20218306 None:intergenic 35.0%
TACTATATGCATTACTCGAG+TGG - chr5_4:20218577-20218596 Msa0842830:intron 35.0%
!! AAAACTTGGTGTAGACTACT+AGG - chr5_4:20218680-20218699 Msa0842830:intron 35.0%
!! CTGTTCTAAAATCCAGCAAT+TGG - chr5_4:20219078-20219097 Msa0842830:intron 35.0%
AGCTTGTATGGAACTATTGA+AGG - chr5_4:20219118-20219137 Msa0842830:intron 35.0%
CTGTTCTAATTTCCATCAAG+TGG + chr5_4:20219174-20219193 None:intergenic 35.0%
TATCGTATTTCCATATCTCC+AGG + chr5_4:20219660-20219679 None:intergenic 35.0%
! ACTAAAGGGCATGTTTGAAT+TGG + chr5_4:20219774-20219793 None:intergenic 35.0%
TATTTGTTTCCGGCATACTT+TGG - chr5_4:20219829-20219848 Msa0842830:intron 35.0%
! TTTTCATAGCCAAAGTATGC+CGG + chr5_4:20219841-20219860 None:intergenic 35.0%
CTATTCTGTTTCAATGGTTC+TGG - chr5_4:20219866-20219885 Msa0842830:intron 35.0%
! GCATTTTGTAATAGATGTCG+CGG - chr5_4:20219935-20219954 Msa0842830:intron 35.0%
! CTACGAAAAAACTTGTTTGG+CGG - chr5_4:20220291-20220310 Msa0842830:intron 35.0%
TTGTTTGGCGGTATGAAATT+CGG - chr5_4:20220303-20220322 Msa0842830:intron 35.0%
ATACCCAACTTCATCTCTAA+AGG - chr5_4:20220436-20220455 Msa0842830:intron 35.0%
GATTGATTATAGAGATGCAC+TGG - chr5_4:20220604-20220623 Msa0842830:intron 35.0%
AATTCAGTAGCTTCTCGATA+AGG + chr5_4:20220685-20220704 None:intergenic 35.0%
! GTGTCAATTTTCTATCTCAC+TGG - chr5_4:20220745-20220764 Msa0842830:intron 35.0%
! GAAAAGCATGAAGCCAATTA+AGG - chr5_4:20220806-20220825 Msa0842830:intron 35.0%
AGACAAAACTGTAGAATGAC+AGG - chr5_4:20220976-20220995 Msa0842830:intron 35.0%
AATGTGTGTAGTGATAACTG+AGG - chr5_4:20221123-20221142 Msa0842830:exon 35.0%
ATGTGTGTAGTGATAACTGA+GGG - chr5_4:20221124-20221143 Msa0842830:exon 35.0%
!! AATCAAATCATTTTGGCCTC+TGG - chr5_4:20221149-20221168 Msa0842830:five_prime_UTR 35.0%
GTAAATAATCCCATAACCAG+AGG + chr5_4:20221168-20221187 None:intergenic 35.0%
AAGATTAGAAACCTTTCCGC+AGG + chr5_4:20217523-20217542 None:intergenic 40.0%
CTTCAAGCTGATTACACTGA+AGG - chr5_4:20217720-20217739 Msa0842830:three_prime_UTR 40.0%
AAGTTATCCCGTGGAGTTTA+TGG - chr5_4:20217994-20218013 Msa0842830:CDS 40.0%
TGTCTCTGGCATTCATTCTT+TGG - chr5_4:20218177-20218196 Msa0842830:intron 40.0%
GATAGAGAGTTGTCCCAAAA+TGG + chr5_4:20218327-20218346 None:intergenic 40.0%
TTCTTCTTCCCTCTTCTTTC+GGG + chr5_4:20218366-20218385 None:intergenic 40.0%
CTTCTTCTTCCCTCTTCTTT+CGG + chr5_4:20218367-20218386 None:intergenic 40.0%
AGAAGAAGGTTGTCCCAAAA+TGG - chr5_4:20218379-20218398 Msa0842830:intron 40.0%
GAAGCTGTGATACCAATTGT+TGG + chr5_4:20218877-20218896 None:intergenic 40.0%
AGCTTGTAAGGCATGATTGA+AGG - chr5_4:20218902-20218921 Msa0842830:intron 40.0%
!! CAGCTTCAGTTTAGCTTGTA+TGG - chr5_4:20219106-20219125 Msa0842830:intron 40.0%
ATCAAGTGGTATCAGAGCTT+CGG + chr5_4:20219160-20219179 None:intergenic 40.0%
TCTGTTTCCACAAACTAACC+TGG - chr5_4:20219639-20219658 Msa0842830:intron 40.0%
!! CATATCTCCAGGTTAGTTTG+TGG + chr5_4:20219649-20219668 None:intergenic 40.0%
CACAAACTAACCTGGAGATA+TGG - chr5_4:20219647-20219666 Msa0842830:intron 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr5_4:20219726-20219745 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr5_4:20219727-20219746 None:intergenic 40.0%
TTAGACATGAGAATTGGGGA+AGG + chr5_4:20220249-20220268 None:intergenic 40.0%
CTTCTCGATAAGGTCAACAT+GGG + chr5_4:20220675-20220694 None:intergenic 40.0%
CATTCATTTGGTTGCAGCTA+TGG - chr5_4:20220784-20220803 Msa0842830:intron 40.0%
AGCACACAACTGACACATTT+CGG + chr5_4:20220853-20220872 None:intergenic 40.0%
AAAAATTGACATGTGGCCAC+AGG + chr5_4:20220879-20220898 None:intergenic 40.0%
!!! AAGCAGTTTTAGCTGTGTTC+TGG - chr5_4:20220934-20220953 Msa0842830:intron 40.0%
CATAACATGCAGAGTATGCA+AGG + chr5_4:20221067-20221086 None:intergenic 40.0%
!! ATCATTTTGGCCTCTGGTTA+TGG - chr5_4:20221155-20221174 Msa0842830:five_prime_UTR 40.0%
!! TCATTTTGGCCTCTGGTTAT+GGG - chr5_4:20221156-20221175 Msa0842830:five_prime_UTR 40.0%
AAGGTTTCTACTGTTGTGCG+CGG - chr5_4:20217455-20217474 Msa0842830:three_prime_UTR 45.0%
TCTAACAGGCCTATCCAAAC+AGG - chr5_4:20218098-20218117 Msa0842830:intron 45.0%
! TGTTTCTGTCCCGAAAGAAG+AGG - chr5_4:20218354-20218373 Msa0842830:intron 45.0%
GTTTCTGTCCCGAAAGAAGA+GGG - chr5_4:20218355-20218374 Msa0842830:intron 45.0%
CGAAAGAAGAGGGAAGAAGA+AGG - chr5_4:20218365-20218384 Msa0842830:intron 45.0%
TCGGGCCGTAGAAAAAAACT+TGG - chr5_4:20218666-20218685 Msa0842830:intron 45.0%
CAGCTTCAGTTGAGCTTGTA+AGG - chr5_4:20218890-20218909 Msa0842830:intron 45.0%
GAAGCTGTGATACCAATTGC+TGG + chr5_4:20219093-20219112 None:intergenic 45.0%
GAGCTTCGGTTAAGCTTGTA+AGG + chr5_4:20219146-20219165 None:intergenic 45.0%
! GAAGCTCTGATACCACTTGA+TGG - chr5_4:20219159-20219178 Msa0842830:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG - chr5_4:20219733-20219752 Msa0842830:intron 45.0%
TGGCGGTATGAAATTCGGAT+CGG - chr5_4:20220308-20220327 Msa0842830:intron 45.0%
ATGAAATTCGGATCGGATGC+AGG - chr5_4:20220315-20220334 Msa0842830:intron 45.0%
TGAAATTCGGATCGGATGCA+GGG - chr5_4:20220316-20220335 Msa0842830:intron 45.0%
TAGAGATGCACTGGATGCTT+TGG - chr5_4:20220613-20220632 Msa0842830:intron 45.0%
AGAGATGCACTGGATGCTTT+GGG - chr5_4:20220614-20220633 Msa0842830:intron 45.0%
GCTTCTCGATAAGGTCAACA+TGG + chr5_4:20220676-20220695 None:intergenic 45.0%
CGCAGGTGAAACAACGAACT+GGG + chr5_4:20217506-20217525 None:intergenic 50.0%
! CCAGTTCGTTGTTTCACCTG+CGG - chr5_4:20217504-20217523 Msa0842830:three_prime_UTR 50.0%
! TCGTTGTTTCACCTGCGGAA+AGG - chr5_4:20217509-20217528 Msa0842830:three_prime_UTR 50.0%
GAGATGCACTGGATGCTTTG+GGG - chr5_4:20220615-20220634 Msa0842830:intron 50.0%
GCATACGCCTGCAGCAATAT+CGG + chr5_4:20220646-20220665 None:intergenic 50.0%
TCAGTTGTGTGCTAGTCCTG+TGG - chr5_4:20220860-20220879 Msa0842830:intron 50.0%
CCGCAGGTGAAACAACGAAC+TGG + chr5_4:20217507-20217526 None:intergenic 55.0%
GAGAATTGGGGAAGGACCCT+AGG + chr5_4:20220241-20220260 None:intergenic 55.0%
!! TGCACTGGATGCTTTGGGGT+TGG - chr5_4:20220619-20220638 Msa0842830:intron 55.0%
! GGTTGGTCCGATATTGCTGC+AGG - chr5_4:20220636-20220655 Msa0842830:intron 55.0%
TGTGCGCGGCGTGAGCAGAG+AGG - chr5_4:20217469-20217488 Msa0842830:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20217428 20221201 20217428 ID=Msa0842830;Name=Msa0842830
chr5_4 mRNA 20217428 20221201 20217428 ID=Msa0842830-mRNA-1;Parent=Msa0842830;Name=Msa0842830-mRNA-1;_AED=0.13;_eAED=0.13;_QI=67|1|1|1|0|0|4|375|71
chr5_4 exon 20217428 20217828 20217428 ID=Msa0842830-mRNA-1:exon:8367;Parent=Msa0842830-mRNA-1
chr5_4 exon 20217919 20218013 20217919 ID=Msa0842830-mRNA-1:exon:8366;Parent=Msa0842830-mRNA-1
chr5_4 exon 20220887 20220945 20220887 ID=Msa0842830-mRNA-1:exon:8365;Parent=Msa0842830-mRNA-1
chr5_4 exon 20221099 20221201 20221099 ID=Msa0842830-mRNA-1:exon:8364;Parent=Msa0842830-mRNA-1
chr5_4 five_prime_UTR 20221135 20221201 20221135 ID=Msa0842830-mRNA-1:five_prime_utr;Parent=Msa0842830-mRNA-1
chr5_4 CDS 20221099 20221134 20221099 ID=Msa0842830-mRNA-1:cds;Parent=Msa0842830-mRNA-1
chr5_4 CDS 20220887 20220945 20220887 ID=Msa0842830-mRNA-1:cds;Parent=Msa0842830-mRNA-1
chr5_4 CDS 20217919 20218013 20217919 ID=Msa0842830-mRNA-1:cds;Parent=Msa0842830-mRNA-1
chr5_4 CDS 20217803 20217828 20217803 ID=Msa0842830-mRNA-1:cds;Parent=Msa0842830-mRNA-1
chr5_4 three_prime_UTR 20217428 20217802 20217428 ID=Msa0842830-mRNA-1:three_prime_utr;Parent=Msa0842830-mRNA-1
Gene Sequence

>Msa0842830

ATGATTATCCCAGTTCGTTGTTTCACCTGCGGAAAGGTCATTGGAAACAAATGGGATTCTTACCTTGACTTTCTTCAAGCTGATTACACTGAAGGAGATGCACTGGATGCTTTGGGGTTGGTCCGATATTGCTGCAGGCGTATGCTTATGACCCATGTTGACCTTATCGAGAAGCTACTGAATTACAATACTATGGAAAAGCATGAAGCCAATTAA

Protein sequence

>Msa0842830

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKHEAN*