AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012350 MtrunA17_Chr7g0215521 97.342 301 7 1 1 301 125 424 0.0 600
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012350 AT3G02570.1 61.616 297 112 2 2 298 135 429 5.66e-131 379
Msa1012350 AT1G67070.1 59.197 299 120 2 2 299 142 439 4.05e-129 375
Msa1012350 AT1G67070.2 59.197 299 120 2 2 299 142 439 4.05e-129 375
Msa1012350 AT1G67070.3 61.340 194 75 0 2 195 142 335 4.55e-81 249

Find 105 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTTGGATTTGGTTTA+TGG 0.064643 7_1:-17419558 Msa1012350:three_prime_UTR
CTTGGATTTCTTTGTTTAAA+TGG 0.081988 7_1:-17423396 Msa1012350:five_prime_UTR
AACACCACTGTTTCCCCTTT+TGG 0.191794 7_1:+17419819 None:intergenic
AGTCGGCACATCTATGAATT+TGG 0.213240 7_1:+17420612 None:intergenic
ATCCTAGCCAACTCCTTATC+TGG 0.231811 7_1:+17423050 None:intergenic
GTGGTGTTCCCGGCTGTTCC+AGG 0.310385 7_1:-17419804 Msa1012350:CDS
TTGGATTTCTTTGTTTAAAT+GGG 0.324983 7_1:-17423395 Msa1012350:five_prime_UTR
TTCGGTGATTTCATAAACTT+TGG 0.326384 7_1:+17419728 None:intergenic
AATCAATACCCATCCGATAT+TGG 0.337274 7_1:-17420784 Msa1012350:CDS
CTTATGATGGGGTGCTCCCT+TGG 0.359753 7_1:-17423414 Msa1012350:five_prime_UTR
GAACCGCATGCTTATTTATC+CGG 0.360607 7_1:-17420691 Msa1012350:CDS
TTGTGGATTTATCACTCTTA+AGG 0.363037 7_1:-17422943 Msa1012350:intron
CATCTATGAATTTGGGAGTT+AGG 0.363872 7_1:+17420620 None:intergenic
TGTTTGTATTGATGCTTCAT+AGG 0.365248 7_1:-17423202 Msa1012350:five_prime_UTR
AGCTGTGATTCATACTGTTC+CGG 0.380324 7_1:-17421509 Msa1012350:CDS
ATGGTACTGAACCCACTAAT+CGG 0.382106 7_1:+17419462 None:intergenic
GGGATATATTTATTTACATA+TGG 0.387920 7_1:+17419879 None:intergenic
AGCTGCAATCACACCAATAT+CGG 0.389579 7_1:+17420771 None:intergenic
TATATAGTTTATGAAAAGGT+TGG 0.395969 7_1:-17423139 Msa1012350:five_prime_UTR
GAAGAGTACTTAGGTAGCTT+AGG 0.398833 7_1:-17419531 Msa1012350:three_prime_UTR
GACACTCCTCGCAGAATCTC+TGG 0.400985 7_1:+17419909 None:intergenic
AGGGGAAACAGTGGTGTTCC+CGG 0.401430 7_1:-17419814 Msa1012350:CDS
CCAACTAGGTCGACAACTTC+CGG 0.401669 7_1:+17421490 None:intergenic
GTCGGCACATCTATGAATTT+GGG 0.403266 7_1:+17420613 None:intergenic
CTGGTGAAGCATTGTTCCTC+GGG 0.421661 7_1:-17420720 Msa1012350:CDS
TAAATATATCCCGCCATTTG+AGG 0.424847 7_1:-17419868 Msa1012350:CDS
GTGAACACAGCCTGTAGAAC+AGG 0.424853 7_1:+17421406 None:intergenic
TGTATCCGTGCTTCTTATGA+TGG 0.437282 7_1:-17423427 Msa1012350:five_prime_UTR
GTTGTATATAGTTTATGAAA+AGG 0.440342 7_1:-17423143 Msa1012350:five_prime_UTR
GAGTTGCATCTGTACAGAAC+AGG 0.440421 7_1:-17419651 Msa1012350:CDS
CCGGAAGTTGTCGACCTAGT+TGG 0.441959 7_1:-17421490 Msa1012350:CDS
ATCGTTGTATTCTCCCAAAA+GGG 0.454733 7_1:-17419833 Msa1012350:CDS
TCGGTGATTTCATAAACTTT+GGG 0.454996 7_1:+17419729 None:intergenic
TTCCCATCTTTATACACATC+AGG 0.456949 7_1:+17423011 None:intergenic
TTGTACTTCATCCCGATTAG+TGG 0.459096 7_1:-17419474 Msa1012350:three_prime_UTR
GAAGGTTAAACCTGTTCTAC+AGG 0.460116 7_1:-17421416 Msa1012350:CDS
AACCGCATGCTTATTTATCC+GGG 0.461885 7_1:-17420690 Msa1012350:CDS
CATGTATTAGGTGCTATCTG+TGG 0.466843 7_1:-17423099 Msa1012350:five_prime_UTR
ATGGACGGACCTGGAACAGC+CGG 0.468574 7_1:+17419795 None:intergenic
TGGTGCTGCAAATGCAAATC+TGG 0.472964 7_1:-17421470 Msa1012350:CDS
ATGTATTAGGTGCTATCTGT+GGG 0.477009 7_1:-17423098 Msa1012350:five_prime_UTR
CATCCTGATGTGTATAAAGA+TGG 0.480890 7_1:-17423014 Msa1012350:CDS
TGGTACTGAACCCACTAATC+GGG 0.485125 7_1:+17419463 None:intergenic
GTCATTGCAAGAGCCATCTC+AGG 0.487041 7_1:+17422981 None:intergenic
GTATCCGTGCTTCTTATGAT+GGG 0.487401 7_1:-17423426 Msa1012350:five_prime_UTR
TATGAATTTGGGAGTTAGGC+CGG 0.490147 7_1:+17420624 None:intergenic
CCTGGTGAAGCATTGTTCCT+CGG 0.492483 7_1:-17420721 Msa1012350:CDS
CAAGACTCTTAAGCATTCAA+AGG 0.501223 7_1:-17419609 Msa1012350:exon
TCCTAGCCAACTCCTTATCT+GGG 0.501884 7_1:+17423051 None:intergenic
TCGATCTCGAATTCCTCAAA+TGG 0.502838 7_1:+17419855 None:intergenic
TATGGAAAAGAAGAGTACTT+AGG 0.503711 7_1:-17419540 Msa1012350:three_prime_UTR
GATCGTTGTATTCTCCCAAA+AGG 0.504887 7_1:-17419834 Msa1012350:CDS
GGTGAGGCATTTGACAGAAA+AGG 0.512954 7_1:-17420830 Msa1012350:CDS
ACGCTAATCTCTGTGTAAGC+AGG 0.519438 7_1:+17419687 None:intergenic
TCAATACAAACATAGACATC+AGG 0.520128 7_1:+17423213 None:intergenic
AGCGAAAAGAGCATCACCTT+CGG 0.522693 7_1:+17419710 None:intergenic
CACCAGGATTGAGTTTCACA+TGG 0.523571 7_1:+17420737 None:intergenic
TTGCATTTGCAGCACCAACT+AGG 0.525377 7_1:+17421476 None:intergenic
AATAATATCAATAAGTGAAG+TGG 0.527721 7_1:-17419202 Msa1012350:three_prime_UTR
GGAGCTGTTGGTGCTGCGAT+TGG 0.529500 7_1:-17420809 Msa1012350:CDS
TTCCATGCTCACATACAAGC+AGG 0.540703 7_1:-17420584 Msa1012350:intron
TATCAATCTGTTCACAGCAT+AGG 0.542513 7_1:+17421351 None:intergenic
TTTGACAGAAAAGGAGCTGT+TGG 0.543234 7_1:-17420821 Msa1012350:CDS
CCGAGGAACAATGCTTCACC+AGG 0.545757 7_1:+17420721 None:intergenic
TGTGTTCATCGATCCTTCCC+CGG 0.546008 7_1:+17419758 None:intergenic
TATACAAGCTCACCCAGATA+AGG 0.548295 7_1:-17423063 Msa1012350:five_prime_UTR
TCTCGAATTCCTCAAATGGC+GGG 0.554372 7_1:+17419859 None:intergenic
TTAGGTGCTATCTGTGGGGA+AGG 0.554929 7_1:-17423093 Msa1012350:five_prime_UTR
TGGGAATCATAAACCTGAGA+TGG 0.555786 7_1:-17422994 Msa1012350:CDS
CGGGGAGTGTATTGAATGCA+TGG 0.556667 7_1:-17420671 Msa1012350:CDS
AACCATGTGAAACTCAATCC+TGG 0.557868 7_1:-17420739 Msa1012350:CDS
TTCAAAGGTGGAAGAGCTTG+TGG 0.562168 7_1:-17419594 Msa1012350:three_prime_UTR
TACCTGCTTGTATGTGAGCA+TGG 0.563027 7_1:+17420582 None:intergenic
GCAATCACACCAATATCGGA+TGG 0.570657 7_1:+17420775 None:intergenic
TGTACTTCATCCCGATTAGT+GGG 0.573043 7_1:-17419473 Msa1012350:three_prime_UTR
ACCCAGATAAGGAGTTGGCT+AGG 0.574603 7_1:-17423052 Msa1012350:five_prime_UTR
GACTCTTAAGCATTCAAAGG+TGG 0.575143 7_1:-17419606 Msa1012350:exon
TGATCAGAATGGTGAAGAGA+AGG 0.578017 7_1:-17421434 Msa1012350:CDS
TCTGACAATGTTGTGCGAGC+CGG 0.584140 7_1:-17420643 Msa1012350:CDS
CATGCATTCAATACACTCCC+CGG 0.594196 7_1:+17420672 None:intergenic
ATCTCGAATTCCTCAAATGG+CGG 0.596472 7_1:+17419858 None:intergenic
ATTGATAAATCGACTGCATG+AGG 0.598903 7_1:-17421335 Msa1012350:CDS
TGGACGGACCTGGAACAGCC+GGG 0.599936 7_1:+17419796 None:intergenic
AGCTCACCCAGATAAGGAGT+TGG 0.600443 7_1:-17423057 Msa1012350:five_prime_UTR
CAATCACACCAATATCGGAT+GGG 0.611100 7_1:+17420776 None:intergenic
CATTTAAACAAAGAAATCCA+AGG 0.619799 7_1:+17423397 None:intergenic
TGTTCTGTACAGATGCAACT+CGG 0.623652 7_1:+17419653 None:intergenic
TCGACTGCATGAGGAAAGTG+AGG 0.627796 7_1:-17421326 Msa1012350:intron
ATTTAAACAAAGAAATCCAA+GGG 0.643314 7_1:+17423398 None:intergenic
AAAGTTTATGAAATCACCGA+AGG 0.643879 7_1:-17419726 Msa1012350:CDS
GCACCCCATCATAAGAAGCA+CGG 0.648462 7_1:+17423422 None:intergenic
TCGTTGTATTCTCCCAAAAG+GGG 0.650658 7_1:-17419832 Msa1012350:CDS
ACCGCATGCTTATTTATCCG+GGG 0.651731 7_1:-17420689 Msa1012350:CDS
AGTTGCATCTGTACAGAACA+GGG 0.662530 7_1:-17419650 Msa1012350:CDS
TTAGAAACTAGTGATCAGAA+TGG 0.664033 7_1:-17421445 Msa1012350:CDS
GTGAGCATGGAACAAAGAGT+CGG 0.664307 7_1:+17420595 None:intergenic
GGGGAAGGATCGATGAACAC+AGG 0.664529 7_1:-17419756 Msa1012350:CDS
ATCCTGATGTGTATAAAGAT+GGG 0.669111 7_1:-17423013 Msa1012350:CDS
TCTCCCAAAAGGGGAAACAG+TGG 0.677647 7_1:-17419823 Msa1012350:CDS
CATGCGGTTCATTCGCCCCG+AGG 0.682048 7_1:+17420704 None:intergenic
TCCCCGGATAAATAAGCATG+CGG 0.684201 7_1:+17420688 None:intergenic
TGGTGAAGCATTGTTCCTCG+GGG 0.705943 7_1:-17420719 Msa1012350:CDS
TATCCGTGCTTCTTATGATG+GGG 0.710824 7_1:-17423425 Msa1012350:five_prime_UTR
AAAGGTGGAAGAGCTTGTGG+AGG 0.712969 7_1:-17419591 Msa1012350:three_prime_UTR
TGTATTAGGTGCTATCTGTG+GGG 0.728182 7_1:-17423097 Msa1012350:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTTTTTATTATTTT+TGG - chr7_1:17423315-17423334 Msa1012350:intron 0.0%
!!! ACAAAAATTATTAATTTTCT+TGG + chr7_1:17420525-17420544 None:intergenic 10.0%
!! AAATGCAAATAAATAAAAAT+AGG - chr7_1:17420682-17420701 Msa1012350:CDS 10.0%
!!! CTAATTTTCAACTTATAATA+AGG + chr7_1:17419940-17419959 None:intergenic 15.0%
!!! CTTATTATAAGTTGAAAATT+AGG - chr7_1:17419938-17419957 Msa1012350:intron 15.0%
!! TTGTTATAAAGTAAAATATG+TGG - chr7_1:17420323-17420342 Msa1012350:intron 15.0%
!! ATGCAATAAGAAATAATTAA+GGG + chr7_1:17420585-17420604 None:intergenic 15.0%
!! AATGCAATAAGAAATAATTA+AGG + chr7_1:17420586-17420605 None:intergenic 15.0%
!!! TTTTTTAAACTTGTAGAATA+AGG - chr7_1:17421036-17421055 Msa1012350:intron 15.0%
!!! TTTCTGTTTTTTTTCTATTT+AGG - chr7_1:17421136-17421155 Msa1012350:intron 15.0%
!! ATTCTAATAATTGAACTTTA+GGG + chr7_1:17422366-17422385 None:intergenic 15.0%
!! AATTCTAATAATTGAACTTT+AGG + chr7_1:17422367-17422386 None:intergenic 15.0%
!! ATTTAAACAAAGAAATCCAA+GGG + chr7_1:17419280-17419299 None:intergenic 20.0%
!!! TTGGATTTCTTTGTTTAAAT+GGG - chr7_1:17419280-17419299 Msa1012350:three_prime_UTR 20.0%
!! GTTGTATATAGTTTATGAAA+AGG - chr7_1:17419532-17419551 Msa1012350:three_prime_UTR 20.0%
!! TATATAGTTTATGAAAAGGT+TGG - chr7_1:17419536-17419555 Msa1012350:three_prime_UTR 20.0%
!!! ATTATAAGTTGAAAATTAGG+TGG - chr7_1:17419941-17419960 Msa1012350:intron 20.0%
!!! TTATTACAGATCTTTTTGTT+TGG - chr7_1:17420367-17420386 Msa1012350:intron 20.0%
!!! TTTGAGAATAAGTTTTTCTT+CGG - chr7_1:17420431-17420450 Msa1012350:intron 20.0%
!! ATAATACCCTTAACTATTTA+TGG + chr7_1:17420626-17420645 None:intergenic 20.0%
!! ATTTAGTTAACTCAAAAGTT+CGG - chr7_1:17420832-17420851 Msa1012350:CDS 20.0%
!! TACAATAAATCAGTAAAAGA+TGG + chr7_1:17421088-17421107 None:intergenic 20.0%
!! TTATTGTAATGTTATTCTCT+TGG - chr7_1:17421100-17421119 Msa1012350:intron 20.0%
!!! TGAATAGACTCTTAATTTTA+TGG - chr7_1:17421704-17421723 Msa1012350:intron 20.0%
!!! AACTATTGATTTCATAATAG+TGG + chr7_1:17421746-17421765 None:intergenic 20.0%
!!! ACTTTTATAACACACATTAA+TGG - chr7_1:17422147-17422166 Msa1012350:intron 20.0%
!! GATTAAACACATATTTATCA+TGG - chr7_1:17422654-17422673 Msa1012350:intron 20.0%
!! GGGATATATTTATTTACATA+TGG + chr7_1:17422799-17422818 None:intergenic 20.0%
!! AGGAAATAAAAAGAAATTCT+TGG - chr7_1:17423104-17423123 Msa1012350:five_prime_UTR 20.0%
!! TAAAAAGAAATTCTTGGATT+TGG - chr7_1:17423110-17423129 Msa1012350:five_prime_UTR 20.0%
!!! ATATATTTTATTCGCAAACA+TGG + chr7_1:17423251-17423270 None:intergenic 20.0%
!! AATAATATCAATAAGTGAAG+TGG - chr7_1:17423473-17423492 Msa1012350:five_prime_UTR 20.0%
! CATTTAAACAAAGAAATCCA+AGG + chr7_1:17419281-17419300 None:intergenic 25.0%
!! CTTGGATTTCTTTGTTTAAA+TGG - chr7_1:17419279-17419298 Msa1012350:three_prime_UTR 25.0%
!!! TCTGTTGTTTTTCATGTATT+AGG - chr7_1:17419564-17419583 Msa1012350:three_prime_UTR 25.0%
! GGTAGTATTTAATTATTCTG+TGG - chr7_1:17419753-17419772 Msa1012350:CDS 25.0%
! TATTATGAGAATAACTGAAC+TGG - chr7_1:17419808-17419827 Msa1012350:CDS 25.0%
! ATTGTTAGTTAGAATATCAC+TGG + chr7_1:17420240-17420259 None:intergenic 25.0%
!! AATTTGAAATGATAACCCTT+TGG - chr7_1:17420282-17420301 Msa1012350:intron 25.0%
!! TTGAGAATAAGTTTTTCTTC+GGG - chr7_1:17420432-17420451 Msa1012350:intron 25.0%
! GCAATAAAACGACAAATAAA+AGG + chr7_1:17420490-17420509 None:intergenic 25.0%
!! ACTTATTTGAGATTATCTAC+TGG + chr7_1:17421679-17421698 None:intergenic 25.0%
! AATGTGTGTTATAAAAGTTG+CGG + chr7_1:17422145-17422164 None:intergenic 25.0%
!!! TCAAATTTTAAAACCACGTA+TGG - chr7_1:17422239-17422258 Msa1012350:intron 25.0%
!! AAGACTGAAATAAGTTCTAA+CGG + chr7_1:17422392-17422411 None:intergenic 25.0%
! TCTTCCTTTGAATTTCATAT+TGG - chr7_1:17422446-17422465 Msa1012350:intron 25.0%
! ATGACCAATATGAAATTCAA+AGG + chr7_1:17422453-17422472 None:intergenic 25.0%
! TTTGAATTTCATATTGGTCA+TGG - chr7_1:17422452-17422471 Msa1012350:intron 25.0%
! GATTCATCTTTATTGAGATT+TGG - chr7_1:17422474-17422493 Msa1012350:intron 25.0%
! TGCAAAAAAAACAGAACAAA+AGG + chr7_1:17422502-17422521 None:intergenic 25.0%
! TGTGATATTAACTCAATTGT+AGG - chr7_1:17422583-17422602 Msa1012350:intron 25.0%
! ATGCATAACCATATACTATT+TGG - chr7_1:17422613-17422632 Msa1012350:intron 25.0%
!!! AAATTCTCTTATTTTCTCAC+AGG - chr7_1:17422738-17422757 Msa1012350:intron 25.0%
!!! AATTCTCTTATTTTCTCACA+GGG - chr7_1:17422739-17422758 Msa1012350:intron 25.0%
!! AAATTCTTGGATTTGGTTTA+TGG - chr7_1:17423117-17423136 Msa1012350:five_prime_UTR 25.0%
!!! GGTGTTTAGTTTTACGAAAA+AGG - chr7_1:17419301-17419320 Msa1012350:three_prime_UTR 30.0%
TCAATACAAACATAGACATC+AGG + chr7_1:17419465-17419484 None:intergenic 30.0%
! TGTTTGTATTGATGCTTCAT+AGG - chr7_1:17419473-17419492 Msa1012350:three_prime_UTR 30.0%
ATCCTGATGTGTATAAAGAT+GGG - chr7_1:17419662-17419681 Msa1012350:CDS 30.0%
TTGTGGATTTATCACTCTTA+AGG - chr7_1:17419732-17419751 Msa1012350:CDS 30.0%
AAGGAATTATACCTAACAGA+TGG + chr7_1:17420111-17420130 None:intergenic 30.0%
TTCACTCAGTCATATCATTA+AGG + chr7_1:17420130-17420149 None:intergenic 30.0%
GGTTGTATTGTATCAGAAAA+AGG + chr7_1:17420219-17420238 None:intergenic 30.0%
! TGAGAATAAGTTTTTCTTCG+GGG - chr7_1:17420433-17420452 Msa1012350:intron 30.0%
! ATTTTCTTGGTACACGTAAA+TGG + chr7_1:17420512-17420531 None:intergenic 30.0%
TCTCTGCCATAAATAGTTAA+GGG - chr7_1:17420617-17420636 Msa1012350:CDS 30.0%
TACCTAAACAACTGCTAAAA+AGG - chr7_1:17420712-17420731 Msa1012350:CDS 30.0%
!! TTCCTTTTTAGCAGTTGTTT+AGG + chr7_1:17420717-17420736 None:intergenic 30.0%
AACTGCTAAAAAGGAACATA+GGG - chr7_1:17420721-17420740 Msa1012350:CDS 30.0%
CATGACGTGTCTTTATTAAA+AGG - chr7_1:17420768-17420787 Msa1012350:CDS 30.0%
TAACTCAAAAGTTCGGATTT+CGG - chr7_1:17420839-17420858 Msa1012350:intron 30.0%
ACAAGTTAAGACAATGCAAT+CGG + chr7_1:17420924-17420943 None:intergenic 30.0%
AAGATGGTTGAATATACCAA+AGG + chr7_1:17421072-17421091 None:intergenic 30.0%
TTAGAAACTAGTGATCAGAA+TGG - chr7_1:17421230-17421249 Msa1012350:intron 30.0%
AGTTGATTACTTAATCCGTT+TGG - chr7_1:17421374-17421393 Msa1012350:CDS 30.0%
CCAAACTCTTAAAAACCAAA+CGG + chr7_1:17421392-17421411 None:intergenic 30.0%
CATAAGCTAAAATCAGTTGA+TGG - chr7_1:17421600-17421619 Msa1012350:intron 30.0%
! TAATGTTCTCATTTTGCATC+AGG - chr7_1:17421824-17421843 Msa1012350:intron 30.0%
ATATGATAAGCACTTATGCA+AGG + chr7_1:17422173-17422192 None:intergenic 30.0%
TGTTCATGCCAAATAGTATA+TGG + chr7_1:17422624-17422643 None:intergenic 30.0%
TCATGGTTTCAAAATTTCGA+CGG - chr7_1:17422671-17422690 Msa1012350:intron 30.0%
CCTATTACGATTCATTTCAA+AGG + chr7_1:17422706-17422725 None:intergenic 30.0%
!! CCTTTGAAATGAATCGTAAT+AGG - chr7_1:17422703-17422722 Msa1012350:intron 30.0%
TCGGTGATTTCATAAACTTT+GGG + chr7_1:17422949-17422968 None:intergenic 30.0%
TTCGGTGATTTCATAAACTT+TGG + chr7_1:17422950-17422969 None:intergenic 30.0%
AAAGTTTATGAAATCACCGA+AGG - chr7_1:17422949-17422968 Msa1012350:CDS 30.0%
!! TATGGAAAAGAAGAGTACTT+AGG - chr7_1:17423135-17423154 Msa1012350:five_prime_UTR 30.0%
! AACATGGAAAAAAGTGCAAA+TGG + chr7_1:17423235-17423254 None:intergenic 30.0%
! ATGTATTAGGTGCTATCTGT+GGG - chr7_1:17419577-17419596 Msa1012350:three_prime_UTR 35.0%
CATCCTGATGTGTATAAAGA+TGG - chr7_1:17419661-17419680 Msa1012350:CDS 35.0%
TTCCCATCTTTATACACATC+AGG + chr7_1:17419667-17419686 None:intergenic 35.0%
! TCTTGCAATGACAGATTTTG+AGG - chr7_1:17419705-17419724 Msa1012350:CDS 35.0%
TCAATACTCATGAGTGTGAT+TGG - chr7_1:17420079-17420098 Msa1012350:intron 35.0%
GTTGCTTCATTAACTCCAAA+GGG + chr7_1:17420300-17420319 None:intergenic 35.0%
AGTTGCTTCATTAACTCCAA+AGG + chr7_1:17420301-17420320 None:intergenic 35.0%
AAAGCAGCAGAACTTCAATT+TGG + chr7_1:17420398-17420417 None:intergenic 35.0%
! GAGAATAAGTTTTTCTTCGG+GGG - chr7_1:17420434-17420453 Msa1012350:intron 35.0%
CTCTCTGCCATAAATAGTTA+AGG - chr7_1:17420616-17420635 Msa1012350:CDS 35.0%
CAACTGCTAAAAAGGAACAT+AGG - chr7_1:17420720-17420739 Msa1012350:CDS 35.0%
AGAATGACAGAAATGAACCA+TGG + chr7_1:17420871-17420890 None:intergenic 35.0%
ATTTCTGTCATTCTCCAAGA+CGG - chr7_1:17420877-17420896 Msa1012350:intron 35.0%
CAAGTTAAGACAATGCAATC+GGG + chr7_1:17420923-17420942 None:intergenic 35.0%
TCGACCAAAAAAGACTGTTT+AGG + chr7_1:17420983-17421002 None:intergenic 35.0%
ATAAGGTTAGAGCTTACCTT+TGG - chr7_1:17421053-17421072 Msa1012350:intron 35.0%
TATCAATCTGTTCACAGCAT+AGG + chr7_1:17421327-17421346 None:intergenic 35.0%
ATTGATAAATCGACTGCATG+AGG - chr7_1:17421340-17421359 Msa1012350:CDS 35.0%
!!! CCGTTTGGTTTTTAAGAGTT+TGG - chr7_1:17421389-17421408 Msa1012350:CDS 35.0%
ACTAACATTACGAGACAAGA+AGG + chr7_1:17421448-17421467 None:intergenic 35.0%
AATGTTAGTTACGATGTACG+TGG - chr7_1:17421459-17421478 Msa1012350:CDS 35.0%
TGAAGTCGTTTATCCAAACA+AGG + chr7_1:17421492-17421511 None:intergenic 35.0%
GTTTCTCCATATTGTGTGTT+AGG - chr7_1:17421781-17421800 Msa1012350:intron 35.0%
CATCTACCTAACACACAATA+TGG + chr7_1:17421790-17421809 None:intergenic 35.0%
AATCAATACCCATCCGATAT+TGG - chr7_1:17421891-17421910 Msa1012350:intron 35.0%
CATCTATGAATTTGGGAGTT+AGG + chr7_1:17422058-17422077 None:intergenic 35.0%
TACACCTGATTACTATGCTA+AGG - chr7_1:17422411-17422430 Msa1012350:intron 35.0%
CAAAATTTCGACGGAATACA+TGG - chr7_1:17422680-17422699 Msa1012350:intron 35.0%
TAAATATATCCCGCCATTTG+AGG - chr7_1:17422807-17422826 Msa1012350:intron 35.0%
ATCGTTGTATTCTCCCAAAA+GGG - chr7_1:17422842-17422861 Msa1012350:intron 35.0%
CAAGACTCTTAAGCATTCAA+AGG - chr7_1:17423066-17423085 Msa1012350:five_prime_UTR 35.0%
!!! TAGGTAGTTTTCGAGTTCTT+TGG - chr7_1:17423163-17423182 Msa1012350:five_prime_UTR 35.0%
!!! TAGTTTTCGAGTTCTTTGGT+GGG - chr7_1:17423167-17423186 Msa1012350:five_prime_UTR 35.0%
TGTATCCGTGCTTCTTATGA+TGG - chr7_1:17419248-17419267 Msa1012350:three_prime_UTR 40.0%
GTATCCGTGCTTCTTATGAT+GGG - chr7_1:17419249-17419268 Msa1012350:three_prime_UTR 40.0%
TATCCGTGCTTCTTATGATG+GGG - chr7_1:17419250-17419269 Msa1012350:three_prime_UTR 40.0%
GTTCTTGTCTAACAAGACAC+TGG - chr7_1:17419380-17419399 Msa1012350:three_prime_UTR 40.0%
! CATGTATTAGGTGCTATCTG+TGG - chr7_1:17419576-17419595 Msa1012350:three_prime_UTR 40.0%
! TGTATTAGGTGCTATCTGTG+GGG - chr7_1:17419578-17419597 Msa1012350:three_prime_UTR 40.0%
TATACAAGCTCACCCAGATA+AGG - chr7_1:17419612-17419631 Msa1012350:exon 40.0%
TGGGAATCATAAACCTGAGA+TGG - chr7_1:17419681-17419700 Msa1012350:CDS 40.0%
!!! ACAGATTTTGAGGCTCTTTG+TGG - chr7_1:17419715-17419734 Msa1012350:CDS 40.0%
ATTGGAACTGTCCATCTGTT+AGG - chr7_1:17420097-17420116 Msa1012350:intron 40.0%
CATGTCAATCTCATTCTCTC+TGG - chr7_1:17420180-17420199 Msa1012350:intron 40.0%
!! AGTTCTGCTGCTTTAGTTTG+AGG - chr7_1:17420404-17420423 Msa1012350:intron 40.0%
TAAAGACACGTCATGTAGAG+AGG + chr7_1:17420763-17420782 None:intergenic 40.0%
TTTCTGTCATTCTCCAAGAC+GGG - chr7_1:17420878-17420897 Msa1012350:intron 40.0%
GCAGTATTAAAATCCCGTCT+TGG + chr7_1:17420894-17420913 None:intergenic 40.0%
!!! GTCGCCTAAACAGTCTTTTT+TGG - chr7_1:17420976-17420995 Msa1012350:intron 40.0%
AGCTGTGATTCATACTGTTC+CGG - chr7_1:17421166-17421185 Msa1012350:intron 40.0%
TGATCAGAATGGTGAAGAGA+AGG - chr7_1:17421241-17421260 Msa1012350:intron 40.0%
GAAGGTTAAACCTGTTCTAC+AGG - chr7_1:17421259-17421278 Msa1012350:intron 40.0%
! AGAGTGTTTAGGAGAGCTTA+TGG + chr7_1:17421642-17421661 None:intergenic 40.0%
! TTCTCATTTTGCATCAGGTG+AGG - chr7_1:17421829-17421848 Msa1012350:intron 40.0%
TTTGACAGAAAAGGAGCTGT+TGG - chr7_1:17421854-17421873 Msa1012350:intron 40.0%
CAATCACACCAATATCGGAT+GGG + chr7_1:17421902-17421921 None:intergenic 40.0%
AGCTGCAATCACACCAATAT+CGG + chr7_1:17421907-17421926 None:intergenic 40.0%
AACCATGTGAAACTCAATCC+TGG - chr7_1:17421936-17421955 Msa1012350:intron 40.0%
GAACCGCATGCTTATTTATC+CGG - chr7_1:17421984-17422003 Msa1012350:intron 40.0%
AACCGCATGCTTATTTATCC+GGG - chr7_1:17421985-17422004 Msa1012350:intron 40.0%
TATGAATTTGGGAGTTAGGC+CGG + chr7_1:17422054-17422073 None:intergenic 40.0%
GTCGGCACATCTATGAATTT+GGG + chr7_1:17422065-17422084 None:intergenic 40.0%
AGTCGGCACATCTATGAATT+TGG + chr7_1:17422066-17422085 None:intergenic 40.0%
CATGCCTTAGCATAGTAATC+AGG + chr7_1:17422418-17422437 None:intergenic 40.0%
AACCAACCAAGCAATCTATG+TGG + chr7_1:17422542-17422561 None:intergenic 40.0%
ACATAGATTGCTTGGTTGGT+TGG - chr7_1:17422541-17422560 Msa1012350:intron 40.0%
ATCTCGAATTCCTCAAATGG+CGG + chr7_1:17422820-17422839 None:intergenic 40.0%
TCGATCTCGAATTCCTCAAA+TGG + chr7_1:17422823-17422842 None:intergenic 40.0%
GATCGTTGTATTCTCCCAAA+AGG - chr7_1:17422841-17422860 Msa1012350:intron 40.0%
TCGTTGTATTCTCCCAAAAG+GGG - chr7_1:17422843-17422862 Msa1012350:intron 40.0%
GATGTGACCAAAAAGATGGA+CGG + chr7_1:17422898-17422917 None:intergenic 40.0%
!! TCCATCTTTTTGGTCACATC+CGG - chr7_1:17422898-17422917 Msa1012350:intron 40.0%
TGTTCTGTACAGATGCAACT+CGG + chr7_1:17423025-17423044 None:intergenic 40.0%
AGTTGCATCTGTACAGAACA+GGG - chr7_1:17423025-17423044 Msa1012350:CDS 40.0%
GACTCTTAAGCATTCAAAGG+TGG - chr7_1:17423069-17423088 Msa1012350:five_prime_UTR 40.0%
!! GAAGAGTACTTAGGTAGCTT+AGG - chr7_1:17423144-17423163 Msa1012350:five_prime_UTR 40.0%
!!! GTAGTTTTCGAGTTCTTTGG+TGG - chr7_1:17423166-17423185 Msa1012350:five_prime_UTR 40.0%
TTGTACTTCATCCCGATTAG+TGG - chr7_1:17423201-17423220 Msa1012350:five_prime_UTR 40.0%
TGTACTTCATCCCGATTAGT+GGG - chr7_1:17423202-17423221 Msa1012350:five_prime_UTR 40.0%
! ATGGTACTGAACCCACTAAT+CGG + chr7_1:17423216-17423235 None:intergenic 40.0%
TCCTAGCCAACTCCTTATCT+GGG + chr7_1:17419627-17419646 None:intergenic 45.0%
ATCCTAGCCAACTCCTTATC+TGG + chr7_1:17419628-17419647 None:intergenic 45.0%
!! TTCTCTCTGGTTGAGTTGAG+AGG - chr7_1:17420193-17420212 Msa1012350:intron 45.0%
GACATCCGTTGTTACTCTCT+CGG - chr7_1:17420462-17420481 Msa1012350:intron 45.0%
AGGAACCGAGAGAGTAACAA+CGG + chr7_1:17420470-17420489 None:intergenic 45.0%
TTATGGCAGAGAGAGATACG+CGG + chr7_1:17420609-17420628 None:intergenic 45.0%
TTGCATTTGCAGCACCAACT+AGG + chr7_1:17421202-17421221 None:intergenic 45.0%
!! TGGTGCTGCAAATGCAAATC+TGG - chr7_1:17421205-17421224 Msa1012350:intron 45.0%
!! ACGTGGTCTTAAGCCTTGTT+TGG - chr7_1:17421476-17421495 Msa1012350:CDS 45.0%
!! GAGCACTTGTGAGAGTGTTT+AGG + chr7_1:17421653-17421672 None:intergenic 45.0%
! GGTGAGGCATTTGACAGAAA+AGG - chr7_1:17421845-17421864 Msa1012350:intron 45.0%
GCAATCACACCAATATCGGA+TGG + chr7_1:17421903-17421922 None:intergenic 45.0%
CACCAGGATTGAGTTTCACA+TGG + chr7_1:17421941-17421960 None:intergenic 45.0%
ACCGCATGCTTATTTATCCG+GGG - chr7_1:17421986-17422005 Msa1012350:intron 45.0%
TCCCCGGATAAATAAGCATG+CGG + chr7_1:17421990-17422009 None:intergenic 45.0%
CATGCATTCAATACACTCCC+CGG + chr7_1:17422006-17422025 None:intergenic 45.0%
GTGAGCATGGAACAAAGAGT+CGG + chr7_1:17422083-17422102 None:intergenic 45.0%
TTCCATGCTCACATACAAGC+AGG - chr7_1:17422091-17422110 Msa1012350:intron 45.0%
TACCTGCTTGTATGTGAGCA+TGG + chr7_1:17422096-17422115 None:intergenic 45.0%
CTCATGCCACATAGATTGCT+TGG - chr7_1:17422533-17422552 Msa1012350:intron 45.0%
TGCCACATAGATTGCTTGGT+TGG - chr7_1:17422537-17422556 Msa1012350:intron 45.0%
TCTCGAATTCCTCAAATGGC+GGG + chr7_1:17422819-17422838 None:intergenic 45.0%
! ACACCACTGTTTCCCCTTTT+GGG + chr7_1:17422858-17422877 None:intergenic 45.0%
! AACACCACTGTTTCCCCTTT+TGG + chr7_1:17422859-17422878 None:intergenic 45.0%
!! CCATCTTTTTGGTCACATCC+GGG - chr7_1:17422899-17422918 Msa1012350:intron 45.0%
!! CATCTTTTTGGTCACATCCG+GGG - chr7_1:17422900-17422919 Msa1012350:intron 45.0%
!! AGCGAAAAGAGCATCACCTT+CGG + chr7_1:17422968-17422987 None:intergenic 45.0%
ACGCTAATCTCTGTGTAAGC+AGG + chr7_1:17422991-17423010 None:intergenic 45.0%
GAGTTGCATCTGTACAGAAC+AGG - chr7_1:17423024-17423043 Msa1012350:CDS 45.0%
TTCAAAGGTGGAAGAGCTTG+TGG - chr7_1:17423081-17423100 Msa1012350:five_prime_UTR 45.0%
! TGGTACTGAACCCACTAATC+GGG + chr7_1:17423215-17423234 None:intergenic 45.0%
!! AAACAAAATAAAAATAAAAA+GGG + chr7_1:17419507-17419526 None:intergenic 5.0%
!! TAAACAAAATAAAAATAAAA+AGG + chr7_1:17419508-17419527 None:intergenic 5.0%
!!! TTATTTTTATTTTGTTTAAA+AGG - chr7_1:17419510-17419529 Msa1012350:three_prime_UTR 5.0%
GCACCCCATCATAAGAAGCA+CGG + chr7_1:17419256-17419275 None:intergenic 50.0%
! TTAGGTGCTATCTGTGGGGA+AGG - chr7_1:17419582-17419601 Msa1012350:three_prime_UTR 50.0%
AGCTCACCCAGATAAGGAGT+TGG - chr7_1:17419618-17419637 Msa1012350:exon 50.0%
ACCCAGATAAGGAGTTGGCT+AGG - chr7_1:17419623-17419642 Msa1012350:CDS 50.0%
GTCATTGCAAGAGCCATCTC+AGG + chr7_1:17419697-17419716 None:intergenic 50.0%
! TCGGATTTCGGTCTTGTCCA+TGG - chr7_1:17420851-17420870 Msa1012350:intron 50.0%
CCAACTAGGTCGACAACTTC+CGG + chr7_1:17421188-17421207 None:intergenic 50.0%
GTGAACACAGCCTGTAGAAC+AGG + chr7_1:17421272-17421291 None:intergenic 50.0%
TCGACTGCATGAGGAAAGTG+AGG - chr7_1:17421349-17421368 Msa1012350:CDS 50.0%
!! CCTGGTGAAGCATTGTTCCT+CGG - chr7_1:17421954-17421973 Msa1012350:intron 50.0%
!! CTGGTGAAGCATTGTTCCTC+GGG - chr7_1:17421955-17421974 Msa1012350:intron 50.0%
!! TGGTGAAGCATTGTTCCTCG+GGG - chr7_1:17421956-17421975 Msa1012350:intron 50.0%
! CGGGGAGTGTATTGAATGCA+TGG - chr7_1:17422004-17422023 Msa1012350:intron 50.0%
TCTGACAATGTTGTGCGAGC+CGG - chr7_1:17422032-17422051 Msa1012350:intron 50.0%
GAGACTGACATGTCCATACG+TGG + chr7_1:17422255-17422274 None:intergenic 50.0%
! GGTTTTCCAGAGATTCTGCG+AGG - chr7_1:17422760-17422779 Msa1012350:intron 50.0%
TCTCCCAAAAGGGGAAACAG+TGG - chr7_1:17422852-17422871 Msa1012350:intron 50.0%
! TCCAGGTCCGTCCATCTTTT+TGG - chr7_1:17422888-17422907 Msa1012350:intron 50.0%
ACCAAAAAGATGGACGGACC+TGG + chr7_1:17422892-17422911 None:intergenic 50.0%
CCCGGATGTGACCAAAAAGA+TGG + chr7_1:17422902-17422921 None:intergenic 50.0%
!! TTTTTGGTCACATCCGGGGA+AGG - chr7_1:17422904-17422923 Msa1012350:intron 50.0%
TGTGTTCATCGATCCTTCCC+CGG + chr7_1:17422920-17422939 None:intergenic 50.0%
AAAGGTGGAAGAGCTTGTGG+AGG - chr7_1:17423084-17423103 Msa1012350:five_prime_UTR 50.0%
! CTTATGATGGGGTGCTCCCT+TGG - chr7_1:17419261-17419280 Msa1012350:three_prime_UTR 55.0%
ACACGTCATGTAGAGAGGCG+TGG + chr7_1:17420758-17420777 None:intergenic 55.0%
CCGGAAGTTGTCGACCTAGT+TGG - chr7_1:17421185-17421204 Msa1012350:intron 55.0%
CCGAGGAACAATGCTTCACC+AGG + chr7_1:17421957-17421976 None:intergenic 55.0%
GACACTCCTCGCAGAATCTC+TGG + chr7_1:17422769-17422788 None:intergenic 55.0%
AGGGGAAACAGTGGTGTTCC+CGG - chr7_1:17422861-17422880 Msa1012350:intron 55.0%
GGGGAAGGATCGATGAACAC+AGG - chr7_1:17422919-17422938 Msa1012350:intron 55.0%
!! GGAGCTGTTGGTGCTGCGAT+TGG - chr7_1:17421866-17421885 Msa1012350:intron 60.0%
ATGGACGGACCTGGAACAGC+CGG + chr7_1:17422883-17422902 None:intergenic 60.0%
CATGCGGTTCATTCGCCCCG+AGG + chr7_1:17421974-17421993 None:intergenic 65.0%
GTGGTGTTCCCGGCTGTTCC+AGG - chr7_1:17422871-17422890 Msa1012350:intron 65.0%
TGGACGGACCTGGAACAGCC+GGG + chr7_1:17422882-17422901 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 17419200 17423497 17419200 ID=Msa1012350;Name=Msa1012350
chr7_1 mRNA 17419200 17423497 17419200 ID=Msa1012350-mRNA-1;Parent=Msa1012350;Name=Msa1012350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=417|1|1|1|0.75|0.6|5|420|301
chr7_1 exon 17419200 17419937 17419200 ID=Msa1012350-mRNA-1:exon:4410;Parent=Msa1012350-mRNA-1
chr7_1 exon 17420585 17420851 17420585 ID=Msa1012350-mRNA-1:exon:4409;Parent=Msa1012350-mRNA-1
chr7_1 exon 17421327 17421539 17421327 ID=Msa1012350-mRNA-1:exon:4408;Parent=Msa1012350-mRNA-1
chr7_1 exon 17422944 17423294 17422944 ID=Msa1012350-mRNA-1:exon:4407;Parent=Msa1012350-mRNA-1
chr7_1 exon 17423324 17423497 17423324 ID=Msa1012350-mRNA-1:exon:4406;Parent=Msa1012350-mRNA-1
chr7_1 five_prime_UTR 17423324 17423497 17423324 ID=Msa1012350-mRNA-1:five_prime_utr;Parent=Msa1012350-mRNA-1
chr7_1 five_prime_UTR 17423052 17423294 17423052 ID=Msa1012350-mRNA-1:five_prime_utr;Parent=Msa1012350-mRNA-1
chr7_1 CDS 17422944 17423051 17422944 ID=Msa1012350-mRNA-1:cds;Parent=Msa1012350-mRNA-1
chr7_1 CDS 17421327 17421539 17421327 ID=Msa1012350-mRNA-1:cds;Parent=Msa1012350-mRNA-1
chr7_1 CDS 17420585 17420851 17420585 ID=Msa1012350-mRNA-1:cds;Parent=Msa1012350-mRNA-1
chr7_1 CDS 17419620 17419937 17419620 ID=Msa1012350-mRNA-1:cds;Parent=Msa1012350-mRNA-1
chr7_1 three_prime_UTR 17419200 17419619 17419200 ID=Msa1012350-mRNA-1:three_prime_utr;Parent=Msa1012350-mRNA-1
Gene Sequence

>Msa1012350

ATGCTGCATAAATTGCATCCTGATGTGTATAAAGATGGGAATCATAAACCTGAGATGGCTCTTGCAATGACAGATTTTGAGGCTCTTTGTGGATTTATCACTCTTAAGGAGCTTAAAGCTGTGATTCATACTGTTCCGGAAGTTGTCGACCTAGTTGGTGCTGCAAATGCAAATCTGGTGTTAGAAACTAGTGATCAGAATGGTGAAGAGAAGGTTAAACCTGTTCTACAGGCTGTGTTCACTCATCTTATGTCAGCTAGTAAAGAGATAGTCACCTATGCTGTGAACAGATTGATAAATCGACTGCATGAGGAAAGTGAGGTGAGGCATTTGACAGAAAAGGAGCTGTTGGTGCTGCGATTGGAAAATCAATACCCATCCGATATTGGTGTGATTGCAGCTTTCTTTCTGAACCATGTGAAACTCAATCCTGGTGAAGCATTGTTCCTCGGGGCGAATGAACCGCATGCTTATTTATCCGGGGAGTGTATTGAATGCATGGCAACTTCTGACAATGTTGTGCGAGCCGGCCTAACTCCCAAATTCATAGATGTGCCGACTCTTTGTTCCATGCTCACATACAAGCAGGGTTTTCCAGAGATTCTGCGAGGAGTGTCTATGAATCCATATGTAAATAAATATATCCCGCCATTTGAGGAATTCGAGATCGATCGTTGTATTCTCCCAAAAGGGGAAACAGTGGTGTTCCCGGCTGTTCCAGGTCCGTCCATCTTTTTGGTCACATCCGGGGAAGGATCGATGAACACAGGATCACCCAAAGTTTATGAAATCACCGAAGGTGATGCTCTTTTCGCTCCTGCTTACACAGAGATTAGCGTCGCGAGTGAATCCGAGTTGCATCTGTACAGAACAGGGATTAATAGCAAGTTTTTTCAAGACTCTTAA
Protein sequence

>Msa1012350

MLHKLHPDVYKDGNHKPEMALAMTDFEALCGFITLKELKAVIHTVPEVVDLVGAANANLVLETSDQNGEEKVKPVLQAVFTHLMSASKEIVTYAVNRLINRLHEESEVRHLTEKELLVLRLENQYPSDIGVIAAFFLNHVKLNPGEALFLGANEPHAYLSGECIECMATSDNVVRAGLTPKFIDVPTLCSMLTYKQGFPEILRGVSMNPYVNKYIPPFEEFEIDRCILPKGETVVFPAVPGPSIFLVTSGEGSMNTGSPKVYEITEGDALFAPAYTEISVASESELHLYRTGINSKFFQDS*