AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1344850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 20 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGTTACTTAAATAA+AGG 0.295009 tig0006912:+29264 None:intergenic
CGGAGGTGGAGTCTCCTTAC+AGG 0.322639 tig0006912:-29141 Msa1344850:CDS
GGTCCGACGGCTCTTGTCGC+TGG 0.447438 tig0006912:-29120 Msa1344850:CDS
ATAAAACAGAGGAGCAAAAC+CGG 0.449305 tig0006912:-29201 Msa1344850:five_prime_UTR
AAACAAACGATAGTTATAGT+TGG 0.454841 tig0006912:-29232 Msa1344850:five_prime_UTR
AACAAACGATAGTTATAGTT+GGG 0.462681 tig0006912:-29231 Msa1344850:five_prime_UTR
CTTCTGCTTACTTCTTCCTC+CGG 0.470625 tig0006912:+29182 None:intergenic
CGCCGTCGCCAACTTCGTAT+TGG 0.470647 tig0006912:-29082 Msa1344850:CDS
CAAGAGCCGTCGGACCTGTA+AGG 0.498948 tig0006912:+29127 None:intergenic
ATTCTTGACCAATACGAAGT+TGG 0.520378 tig0006912:+29074 None:intergenic
AAAAGATGATCTATCGGAGG+TGG 0.535377 tig0006912:-29155 Msa1344850:exon
GGCTCTTGTCGCTGGCGTAG+TGG 0.549241 tig0006912:-29112 Msa1344850:CDS
TCATGGTAGACCTCAACAGC+TGG 0.573403 tig0006912:-24433 Msa1344850:intron
ACAGGTGGAACCAGCTGTTG+AGG 0.602644 tig0006912:+24423 Msa1344840:intron
GAAGTTGGCGACGGCGACAG+TGG 0.603579 tig0006912:+29089 None:intergenic
GACCAATACGAAGTTGGCGA+CGG 0.638989 tig0006912:+29080 None:intergenic
GAGTCTCCTTACAGGTCCGA+CGG 0.651201 tig0006912:-29133 Msa1344850:CDS
ACGCCAGCGACAAGAGCCGT+CGG 0.682437 tig0006912:+29117 None:intergenic
AAACAGAGGAGCAAAACCGG+AGG 0.684527 tig0006912:-29198 Msa1344850:five_prime_UTR
TGGGTAGAGACATAAAACAG+AGG 0.704960 tig0006912:-29212 Msa1344850:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATTTATAAAAATTA+TGG - tig0006912:28246-28265 Msa1344850:intron 0.0%
!!! TTGTTTTTATTTTATTTTGA+AGG + tig0006912:24460-24479 Msa1344840:CDS 10.0%
!! TAATTTAATCAATTTCATTT+GGG - tig0006912:24775-24794 Msa1344850:intron 10.0%
!! AATGAAATTGATTAAATTAC+TGG + tig0006912:24774-24793 Msa1344840:CDS 15.0%
!! GTAATTTAATCAATTTCATT+TGG - tig0006912:24774-24793 Msa1344850:intron 15.0%
!! AATTTAATCAATTTCATTTG+GGG - tig0006912:24776-24795 Msa1344850:intron 15.0%
!! AATCAAATGATCATAATTAA+TGG + tig0006912:24871-24890 Msa1344840:CDS 15.0%
!!! ATAGTTTTAATATCTAGTAA+TGG - tig0006912:25158-25177 Msa1344850:intron 15.0%
!!! CTTTATTTTATCTTTAGTTA+TGG + tig0006912:26769-26788 None:intergenic 15.0%
!!! TACAAAAACAGTTTTTTTTT+TGG + tig0006912:26804-26823 None:intergenic 15.0%
!! AAATGAAATATAAGCAAAAA+GGG + tig0006912:27061-27080 None:intergenic 15.0%
!!! TTTTTGCTTATATTTCATTT+CGG - tig0006912:27061-27080 Msa1344850:intron 15.0%
!! TTTGAAGGTTACTTAAATAA+AGG + tig0006912:24445-24464 Msa1344840:CDS 20.0%
!!! GAATTTTCTATAAATCCATA+AGG + tig0006912:24952-24971 Msa1344840:CDS 20.0%
!!! ATAACATGTTTTAAATTCCT+CGG + tig0006912:25013-25032 Msa1344840:CDS 20.0%
!!! TTTTAATATCTAGTAATGGA+AGG - tig0006912:25162-25181 Msa1344850:intron 20.0%
!!! TATTTTTTTCTTTTGGTGAA+CGG - tig0006912:25331-25350 Msa1344850:intron 20.0%
!!! AAAATTAACAATGTTTTGAG+AGG + tig0006912:25503-25522 Msa1344840:three_prime_UTR 20.0%
!!! ACAATTAATTTTAACCAAAC+CGG - tig0006912:25811-25830 Msa1344850:intron 20.0%
!!! AAGAATCTCAATCTAATTTT+TGG + tig0006912:26404-26423 None:intergenic 20.0%
!! GAAATGAAATATAAGCAAAA+AGG + tig0006912:27062-27081 None:intergenic 20.0%
!! TTCTTAGTTAATAAATTCTG+AGG - tig0006912:27515-27534 Msa1344850:intron 20.0%
!! ACAATTGTACAAAAAAAGTA+TGG + tig0006912:27628-27647 None:intergenic 20.0%
!!! TTTTTTGTACAATTGTCAAA+TGG - tig0006912:27632-27651 Msa1344850:intron 20.0%
!! TAAGGATAAAAGATATGAAA+TGG + tig0006912:27675-27694 None:intergenic 20.0%
!!! GTTTTAATAGAAAACTGATA+AGG + tig0006912:27693-27712 None:intergenic 20.0%
!!! TTTTCTATTAAAACTTGCAT+TGG - tig0006912:27699-27718 Msa1344850:intron 20.0%
!! TAAAACTTATACACAAAAGA+GGG + tig0006912:27934-27953 None:intergenic 20.0%
!! ATAAAACTTATACACAAAAG+AGG + tig0006912:27935-27954 None:intergenic 20.0%
!!! ATTTATACTTGTTGCATTAT+TGG + tig0006912:27998-28017 None:intergenic 20.0%
!! CAAATAAAACATGTATGAAA+TGG + tig0006912:28043-28062 None:intergenic 20.0%
!! TGAGCATAAACTAAATAAAT+AGG - tig0006912:28214-28233 Msa1344850:intron 20.0%
!!! AATTTTGATTATGTTGTGAT+TGG + tig0006912:29078-29097 None:intergenic 20.0%
!! CATAATCAAAATTGTTGAAT+TGG - tig0006912:29085-29104 Msa1344850:CDS 20.0%
! AAACAAACGATAGTTATAGT+TGG - tig0006912:24474-24493 Msa1344850:intron 25.0%
! AACAAACGATAGTTATAGTT+GGG - tig0006912:24475-24494 Msa1344850:intron 25.0%
! AGAAGAAAAAGATGATCTAT+CGG - tig0006912:24545-24564 Msa1344850:intron 25.0%
! CCTTTCAACAAATATAAACA+GGG + tig0006912:24708-24727 Msa1344840:CDS 25.0%
! TCCTTTCAACAAATATAAAC+AGG + tig0006912:24709-24728 Msa1344840:CDS 25.0%
! GTGATTGAAATTGTGTAATT+TGG - tig0006912:24824-24843 Msa1344850:intron 25.0%
!!! TTTTTATTTCTGAATGAAGC+TGG - tig0006912:24893-24912 Msa1344850:intron 25.0%
!! TTTAAAACATGTTATTGAGC+TGG - tig0006912:25018-25037 Msa1344850:intron 25.0%
! CCTAATATTCAATCCATTAA+GGG + tig0006912:25199-25218 Msa1344840:exon 25.0%
! TCCTAATATTCAATCCATTA+AGG + tig0006912:25200-25219 Msa1344840:exon 25.0%
!! TTTGATTTAGTCTTCGATTT+AGG - tig0006912:25252-25271 Msa1344850:intron 25.0%
! GGTACTTATATATCTAAACA+GGG + tig0006912:25278-25297 Msa1344840:three_prime_UTR 25.0%
! AGGTACTTATATATCTAAAC+AGG + tig0006912:25279-25298 Msa1344840:three_prime_UTR 25.0%
!!! GCTATCGTATTTTTTTCTTT+TGG - tig0006912:25324-25343 Msa1344850:intron 25.0%
!!! CAATTAATTTTAACCAAACC+GGG - tig0006912:25812-25831 Msa1344850:intron 25.0%
! TTAGATTGAGATTCTTTGTT+TGG - tig0006912:26408-26427 Msa1344850:intron 25.0%
! AATATCATAACAGTTAGAAC+AGG - tig0006912:26673-26692 Msa1344850:intron 25.0%
! ATATCATAACAGTTAGAACA+GGG - tig0006912:26674-26693 Msa1344850:intron 25.0%
!!! CTGTTTTTGTATAAGCTATA+AGG - tig0006912:26813-26832 Msa1344850:intron 25.0%
!! TTTTGCTTATATTTCATTCC+AGG + tig0006912:26976-26995 None:intergenic 25.0%
! ATTCAACATCACATAATTCA+GGG - tig0006912:27958-27977 Msa1344850:intron 25.0%
! CATGAAAATGAAATTTGTAC+TGG - tig0006912:28143-28162 Msa1344850:intron 25.0%
!!! ATTCAGGATTTTTTGCTATA+TGG + tig0006912:28462-28481 None:intergenic 25.0%
! ATAATTATCGTTTCGAATTC+AGG + tig0006912:28478-28497 None:intergenic 25.0%
! AACGATAATTATTGTAACCA+AGG - tig0006912:28486-28505 Msa1344850:intron 25.0%
! TTCATGGAATGATATAGTAA+TGG + tig0006912:28551-28570 None:intergenic 25.0%
! ATATCATTCCATGAATCAAT+TGG - tig0006912:28556-28575 Msa1344850:intron 25.0%
! TTCAGAATGATTGTTTACAT+TGG + tig0006912:28594-28613 None:intergenic 25.0%
! TAAACAAAACAGTTGCATTA+TGG - tig0006912:28896-28915 Msa1344850:intron 25.0%
!! AAACAAGTTGTAATGCTTTT+CGG - tig0006912:28941-28960 Msa1344850:intron 25.0%
! ATCAAAATTGTTGAATTGGT+TGG - tig0006912:29089-29108 Msa1344850:CDS 25.0%
!! ATAGCTGCTTTAATAAGAAA+AGG - tig0006912:29183-29202 Msa1344850:five_prime_UTR 25.0%
!! TAGCTGCTTTAATAAGAAAA+GGG - tig0006912:29184-29203 Msa1344850:five_prime_UTR 25.0%
! AGGAATATAGATCAAAGATA+TGG + tig0006912:29251-29270 None:intergenic 25.0%
ATGAATCAATCGCATAAAAG+GGG + tig0006912:24685-24704 Msa1344840:CDS 30.0%
GATGAATCAATCGCATAAAA+GGG + tig0006912:24686-24705 Msa1344840:CDS 30.0%
! CCCTGTTTATATTTGTTGAA+AGG - tig0006912:24705-24724 Msa1344850:intron 30.0%
TAAACGATGATTCATGATCT+GGG - tig0006912:24745-24764 Msa1344850:intron 30.0%
!! TTACTTTTGCTTCTTCCTTA+TGG - tig0006912:24934-24953 Msa1344850:intron 30.0%
AAGAGAAAACCCTAATGTTA+GGG + tig0006912:24990-25009 Msa1344840:CDS 30.0%
!! CCCTTAATGGATTGAATATT+AGG - tig0006912:25196-25215 Msa1344850:intron 30.0%
ATCGAAGACTAAATCAAACA+CGG + tig0006912:25250-25269 Msa1344840:three_prime_UTR 30.0%
ATGCTATAAACTGCAAACTT+AGG + tig0006912:25299-25318 Msa1344840:three_prime_UTR 30.0%
!! TTTACTTCTAACTCGCTTTT+GGG + tig0006912:25400-25419 Msa1344840:three_prime_UTR 30.0%
! TTTTACTTCTAACTCGCTTT+TGG + tig0006912:25401-25420 Msa1344840:three_prime_UTR 30.0%
ATCGACATAAACATTCTACA+AGG - tig0006912:25427-25446 Msa1344850:intron 30.0%
TCGACATAAACATTCTACAA+GGG - tig0006912:25428-25447 Msa1344850:intron 30.0%
! AAATTCGGGTTATCTTTAGA+AGG + tig0006912:25454-25473 Msa1344840:three_prime_UTR 30.0%
TCATGTTCTGTGATTAAAGT+GGG + tig0006912:25692-25711 None:intergenic 30.0%
TTCATGTTCTGTGATTAAAG+TGG + tig0006912:25693-25712 None:intergenic 30.0%
TATCCATCAATCTGAGTATA+TGG + tig0006912:25936-25955 None:intergenic 30.0%
! AAATGGGAATCACTCTAAAA+GGG + tig0006912:26000-26019 None:intergenic 30.0%
!!! TTTTAGAGTGATTCCCATTT+GGG - tig0006912:26000-26019 Msa1344850:intron 30.0%
!! ATGTGTTTGTTTTCCCAAAT+GGG + tig0006912:26016-26035 None:intergenic 30.0%
!! AATGTGTTTGTTTTCCCAAA+TGG + tig0006912:26017-26036 None:intergenic 30.0%
! ATTAACTAGAACAACGGATT+TGG - tig0006912:26050-26069 Msa1344850:intron 30.0%
! ATTTTTCACATAATCAACCG+AGG - tig0006912:26239-26258 Msa1344850:intron 30.0%
! TGCTTTAGGTAATATAACCT+CGG + tig0006912:26259-26278 None:intergenic 30.0%
! GAGATTTTATTATGCAGAGT+GGG + tig0006912:26348-26367 None:intergenic 30.0%
! AGAGATTTTATTATGCAGAG+TGG + tig0006912:26349-26368 None:intergenic 30.0%
!!! CTCAATCTAATTTTTGGAGT+GGG + tig0006912:26398-26417 None:intergenic 30.0%
!! TCTCAATCTAATTTTTGGAG+TGG + tig0006912:26399-26418 None:intergenic 30.0%
GTCTGCTAGAAATATGAATA+TGG + tig0006912:26540-26559 None:intergenic 30.0%
!! AAGTGCATATGCTTTTGATT+TGG - tig0006912:26614-26633 Msa1344850:intron 30.0%
TATCATAACAGTTAGAACAG+GGG - tig0006912:26675-26694 Msa1344850:intron 30.0%
AAAGTTTGCATTATGTACGA+AGG - tig0006912:26704-26723 Msa1344850:intron 30.0%
AACAAGAGCTTATATATGAC+AGG + tig0006912:26734-26753 None:intergenic 30.0%
AAGCAAAAGTGATAGTTGAA+AGG - tig0006912:26988-27007 Msa1344850:intron 30.0%
GTAGTTAAAAAGTTTGTGTG+TGG + tig0006912:27039-27058 None:intergenic 30.0%
TTGCTTATATTTCATTTCGG+AGG - tig0006912:27064-27083 Msa1344850:intron 30.0%
TGCTTATATTTCATTTCGGA+GGG - tig0006912:27065-27084 Msa1344850:intron 30.0%
GTTGGCTATCTTAGTTATTA+AGG - tig0006912:27130-27149 Msa1344850:intron 30.0%
AGCAGAATAACAGTTACTAT+AGG + tig0006912:27189-27208 None:intergenic 30.0%
ATAGTAACTGTTATTCTGCT+AGG - tig0006912:27189-27208 Msa1344850:intron 30.0%
GACAGTAAAAGTTCTTTGAA+TGG - tig0006912:27228-27247 Msa1344850:intron 30.0%
TAAACACAGCGAGAATATTA+TGG + tig0006912:27294-27313 None:intergenic 30.0%
ATTATCGGATATTGAGCATT+TGG - tig0006912:27886-27905 Msa1344850:intron 30.0%
CATTCAACATCACATAATTC+AGG - tig0006912:27957-27976 Msa1344850:intron 30.0%
AAAACTTGCAAAAGCAAATG+AGG + tig0006912:28374-28393 None:intergenic 30.0%
TGTGATCCAATACTTCTATT+AGG + tig0006912:28436-28455 None:intergenic 30.0%
ATGTGACAATAATATGTCCT+TGG + tig0006912:28506-28525 None:intergenic 30.0%
TCATTCTTATCCTTTGCAAA+TGG - tig0006912:28619-28638 Msa1344850:intron 30.0%
GAAAGAATTTGACTGATCTA+GGG + tig0006912:28981-29000 None:intergenic 30.0%
TTTGATTATGTTGTGATTGG+TGG + tig0006912:29075-29094 None:intergenic 30.0%
TTGATACTCTTGACCATAAT+TGG + tig0006912:29116-29135 None:intergenic 30.0%
!! AATTATGGTCAAGAGTATCA+AGG - tig0006912:29115-29134 Msa1344850:CDS 30.0%
GCTATTTATGAAGACATGAA+TGG + tig0006912:29168-29187 None:intergenic 30.0%
! AGCTGCTTTAATAAGAAAAG+GGG - tig0006912:29185-29204 Msa1344850:five_prime_UTR 30.0%
TTGATCTATATTCCTTGTCA+TGG - tig0006912:29256-29275 Msa1344850:five_prime_UTR 30.0%
ATAAAACAGAGGAGCAAAAC+CGG - tig0006912:24505-24524 Msa1344850:intron 35.0%
AGAAAAAGATGATCTATCGG+AGG - tig0006912:24548-24567 Msa1344850:intron 35.0%
ATTCTTGACCAATACGAAGT+TGG + tig0006912:24635-24654 Msa1344840:CDS 35.0%
TGAATCAATCGCATAAAAGG+GGG + tig0006912:24684-24703 Msa1344840:CDS 35.0%
GGATGAATCAATCGCATAAA+AGG + tig0006912:24687-24706 Msa1344840:CDS 35.0%
GTAAACGATGATTCATGATC+TGG - tig0006912:24744-24763 Msa1344850:intron 35.0%
! AATTTCATTTGGGGTTGTGA+GGG - tig0006912:24785-24804 Msa1344850:intron 35.0%
! TCTGAATGAAGCTGGTATTT+TGG - tig0006912:24901-24920 Msa1344850:intron 35.0%
! CTGAATGAAGCTGGTATTTT+GGG - tig0006912:24902-24921 Msa1344850:intron 35.0%
TTTGATTGCTCCCTAACATT+AGG - tig0006912:24977-24996 Msa1344850:intron 35.0%
TTGATTGCTCCCTAACATTA+GGG - tig0006912:24978-24997 Msa1344850:intron 35.0%
GAAGAGAAAACCCTAATGTT+AGG + tig0006912:24991-25010 Msa1344840:CDS 35.0%
TCACTTTGTAACCTTTCCAA+GGG + tig0006912:25371-25390 Msa1344840:three_prime_UTR 35.0%
TCAGGATGTTAAGGATTTCA+TGG + tig0006912:25543-25562 None:intergenic 35.0%
TAACACACAACCTGAATTGA+TGG - tig0006912:25585-25604 Msa1344850:intron 35.0%
TACAACTTGCAAAGGAGAAA+GGG + tig0006912:25646-25665 None:intergenic 35.0%
CATGTTCTGTGATTAAAGTG+GGG + tig0006912:25691-25710 None:intergenic 35.0%
! AGTATATGGCTAGGGATTTT+TGG + tig0006912:25922-25941 None:intergenic 35.0%
TCAATCTGAGTATATGGCTA+GGG + tig0006912:25930-25949 None:intergenic 35.0%
ATCAATCTGAGTATATGGCT+AGG + tig0006912:25931-25950 None:intergenic 35.0%
TAGCCATATACTCAGATTGA+TGG - tig0006912:25930-25949 Msa1344850:intron 35.0%
CAAATGGGAATCACTCTAAA+AGG + tig0006912:26001-26020 None:intergenic 35.0%
!!! CTTTTAGAGTGATTCCCATT+TGG - tig0006912:25999-26018 Msa1344850:intron 35.0%
! TCCGTTGTTCTAGTTAATCT+GGG + tig0006912:26048-26067 None:intergenic 35.0%
! ATCCGTTGTTCTAGTTAATC+TGG + tig0006912:26049-26068 None:intergenic 35.0%
AAGAGGATGGTATTATTGCT+TGG + tig0006912:26148-26167 None:intergenic 35.0%
TTATTATGCAGAGTGGGAAA+GGG + tig0006912:26342-26361 None:intergenic 35.0%
TTTATTATGCAGAGTGGGAA+AGG + tig0006912:26343-26362 None:intergenic 35.0%
! AGATTCTTTGTTTGGACTCT+AGG - tig0006912:26416-26435 Msa1344850:intron 35.0%
TCATCGTAAACAAGATACGT+GGG + tig0006912:26486-26505 None:intergenic 35.0%
!!! TGAATGGAGGTTTTGACTTA+CGG + tig0006912:26562-26581 None:intergenic 35.0%
! TCAAAACCTCCATTCACTTT+TGG - tig0006912:26566-26585 Msa1344850:intron 35.0%
ATCTGTACTCCAAAAGTGAA+TGG + tig0006912:26578-26597 None:intergenic 35.0%
ACATGTTCACAAACTGTCTT+CGG + tig0006912:26857-26876 None:intergenic 35.0%
CAAATGAGTCAATCCAAGTA+GGG - tig0006912:26940-26959 Msa1344850:intron 35.0%
TGCTTATATTTCATTCCAGG+TGG + tig0006912:26973-26992 None:intergenic 35.0%
! TCACTTTCTGTTGAAAGTGT+TGG - tig0006912:27112-27131 Msa1344850:intron 35.0%
AGTTATTAAGGTCCAATGCA+AGG - tig0006912:27142-27161 Msa1344850:intron 35.0%
GTTATTAAGGTCCAATGCAA+GGG - tig0006912:27143-27162 Msa1344850:intron 35.0%
ACAGCGAGAATATTATGGAT+AGG + tig0006912:27289-27308 None:intergenic 35.0%
! CGTCTTTTATTGTACTTTCC+AGG - tig0006912:27358-27377 Msa1344850:intron 35.0%
! CTTTTCTACTACTTTGTTGC+AGG + tig0006912:27425-27444 None:intergenic 35.0%
TGTGTGTTAGTCCTAAACTA+GGG + tig0006912:27573-27592 None:intergenic 35.0%
TTGTGTGTTAGTCCTAAACT+AGG + tig0006912:27574-27593 None:intergenic 35.0%
!!! ACTTGCATTGGTTTTCTGAT+TGG - tig0006912:27711-27730 Msa1344850:intron 35.0%
ACCGAAATGTGACACATTAT+CGG - tig0006912:27871-27890 Msa1344850:intron 35.0%
TCCGATAATGTGTCACATTT+CGG + tig0006912:27875-27894 None:intergenic 35.0%
! ATACATCAAAGTGCTAAGAG+GGG + tig0006912:28087-28106 None:intergenic 35.0%
! GATACATCAAAGTGCTAAGA+GGG + tig0006912:28088-28107 None:intergenic 35.0%
! ATGAAATTTGTACTGGTCTG+TGG - tig0006912:28150-28169 Msa1344850:intron 35.0%
! GCTCAACCTAATAGAAGTAT+TGG - tig0006912:28427-28446 Msa1344850:intron 35.0%
! TGTTTACATTGGTGTTTACC+AGG + tig0006912:28583-28602 None:intergenic 35.0%
TTTCATTGCTTAGACCAGAT+GGG + tig0006912:28672-28691 None:intergenic 35.0%
! TGGTGTGAACTTGAAACTTT+TGG + tig0006912:28707-28726 None:intergenic 35.0%
GATGTAGATTCTATCATGAG+AGG + tig0006912:28778-28797 None:intergenic 35.0%
! ATCACTTTGAGAATGGTGAA+TGG + tig0006912:28861-28880 None:intergenic 35.0%
GGAAAGAATTTGACTGATCT+AGG + tig0006912:28982-29001 None:intergenic 35.0%
AGATCAGTCAAATTCTTTCC+AGG - tig0006912:28982-29001 Msa1344850:intron 35.0%
CATGAAAACAACACAGTATC+TGG + tig0006912:29021-29040 None:intergenic 35.0%
! TGAATTGGTTGGTCCAATTA+TGG - tig0006912:29100-29119 Msa1344850:CDS 35.0%
GAATGGAGTTTCATCTTCAA+TGG + tig0006912:29151-29170 None:intergenic 35.0%
ACTTCACACTCTCAGTAATA+TGG + tig0006912:29212-29231 None:intergenic 35.0%
TGGGTAGAGACATAAAACAG+AGG - tig0006912:24494-24513 Msa1344850:intron 40.0%
AAAAGATGATCTATCGGAGG+TGG - tig0006912:24551-24570 Msa1344850:intron 40.0%
! CAATTTCATTTGGGGTTGTG+AGG - tig0006912:24784-24803 Msa1344850:intron 40.0%
CATGTTATTGAGCTGGTGTT+TGG - tig0006912:25025-25044 Msa1344850:intron 40.0%
GGAGTGATTTAGTCCCTTAA+TGG - tig0006912:25183-25202 Msa1344850:intron 40.0%
GGATTCTCAGTCACTAAGAT+AGG - tig0006912:25217-25236 Msa1344850:intron 40.0%
TTCTCAGTCACTAAGATAGG+AGG - tig0006912:25220-25239 Msa1344850:intron 40.0%
! TTTTCTTTTGGTGAACGGTG+AGG - tig0006912:25336-25355 Msa1344850:intron 40.0%
! TTTCTTTTGGTGAACGGTGA+GGG - tig0006912:25337-25356 Msa1344850:intron 40.0%
CACTTTGTAACCTTTCCAAG+GGG + tig0006912:25370-25389 Msa1344840:three_prime_UTR 40.0%
CTCACTTTGTAACCTTTCCA+AGG + tig0006912:25372-25391 Msa1344840:three_prime_UTR 40.0%
AGCGAGTTAGAAGTAAAAGC+AGG - tig0006912:25403-25422 Msa1344850:intron 40.0%
AGGATAGTCGAGCTAAATTC+GGG + tig0006912:25468-25487 Msa1344840:three_prime_UTR 40.0%
GAGGATAGTCGAGCTAAATT+CGG + tig0006912:25469-25488 Msa1344840:three_prime_UTR 40.0%
GCAGTTAATGCCATCAATTC+AGG + tig0006912:25598-25617 None:intergenic 40.0%
CTACAACTTGCAAAGGAGAA+AGG + tig0006912:25647-25666 None:intergenic 40.0%
TTGGAGTCTACAACTTGCAA+AGG + tig0006912:25654-25673 None:intergenic 40.0%
! TGGGGCTTTGCTGTAAATTT+GGG + tig0006912:25716-25735 None:intergenic 40.0%
! TTGGGGCTTTGCTGTAAATT+TGG + tig0006912:25717-25736 None:intergenic 40.0%
! TCAAACGGGTGTTTTCTTTG+GGG + tig0006912:25734-25753 None:intergenic 40.0%
! CTCAAACGGGTGTTTTCTTT+GGG + tig0006912:25735-25754 None:intergenic 40.0%
! ACTCAAACGGGTGTTTTCTT+TGG + tig0006912:25736-25755 None:intergenic 40.0%
!! ACAGAAGTATGAGCATTGAC+AGG - tig0006912:25875-25894 Msa1344850:intron 40.0%
! CCGTTGTTCTAGTTAATCTG+GGG + tig0006912:26047-26066 None:intergenic 40.0%
CCCCAGATTAACTAGAACAA+CGG - tig0006912:26044-26063 Msa1344850:intron 40.0%
GCTTGGAATAACACTTCTGA+TGG + tig0006912:26131-26150 None:intergenic 40.0%
AGGCTACATGACAATGCTTT+AGG + tig0006912:26273-26292 None:intergenic 40.0%
! TGAATTTCTGGACAGATCCA+TGG + tig0006912:26311-26330 None:intergenic 40.0%
!!! TTTTGGAGTGGGCTTTGTAA+GGG + tig0006912:26387-26406 None:intergenic 40.0%
!!! TTTTTGGAGTGGGCTTTGTA+AGG + tig0006912:26388-26407 None:intergenic 40.0%
GTTCGACATAAGTACAAGTG+TGG + tig0006912:26455-26474 None:intergenic 40.0%
GTCATCGTAAACAAGATACG+TGG + tig0006912:26487-26506 None:intergenic 40.0%
! TCATGATGATGAAAGCAGGT+TGG + tig0006912:26517-26536 None:intergenic 40.0%
! ATGGTCATGATGATGAAAGC+AGG + tig0006912:26521-26540 None:intergenic 40.0%
TGTACTCCAAAAGTGAATGG+AGG + tig0006912:26575-26594 None:intergenic 40.0%
TGGAGTACAGATAGAATTCC+AGG - tig0006912:26586-26605 Msa1344850:intron 40.0%
AAATGCAGGGACTTCATATG+GGG + tig0006912:26647-26666 None:intergenic 40.0%
CAAATGCAGGGACTTCATAT+GGG + tig0006912:26648-26667 None:intergenic 40.0%
ATATGAAGTCCCTGCATTTG+CGG - tig0006912:26648-26667 Msa1344850:intron 40.0%
TGATATTGACCGCAAATGCA+GGG + tig0006912:26660-26679 None:intergenic 40.0%
ATGATATTGACCGCAAATGC+AGG + tig0006912:26661-26680 None:intergenic 40.0%
AAGCTATAAGGAGAGCTAGT+TGG - tig0006912:26825-26844 Msa1344850:intron 40.0%
GCAAATGAGTCAATCCAAGT+AGG - tig0006912:26939-26958 Msa1344850:intron 40.0%
AGTTGAAAGGTCACTGTATG+TGG - tig0006912:27001-27020 Msa1344850:intron 40.0%
AAAACAGACATCCCTTGCAT+TGG + tig0006912:27157-27176 None:intergenic 40.0%
AACTGTTATTCTGCTAGGTG+AGG - tig0006912:27194-27213 Msa1344850:intron 40.0%
!! TCTCGTCTGGTTTGGTAAAT+GGG + tig0006912:27385-27404 None:intergenic 40.0%
TCTACTACTTTGTTGCAGGT+TGG + tig0006912:27421-27440 None:intergenic 40.0%
TAGTAGAAAAGACGTCACAG+TGG - tig0006912:27434-27453 Msa1344850:intron 40.0%
!! ACACACAAGTTCTAGAGAAC+TGG - tig0006912:27586-27605 Msa1344850:intron 40.0%
! GGTGAGAAAGGTGAGAATTT+TGG + tig0006912:27743-27762 None:intergenic 40.0%
AATTCTCACCTTTCTCACCT+TGG - tig0006912:27744-27763 Msa1344850:intron 40.0%
CTCAATCAACACAAACACCA+AGG + tig0006912:27764-27783 None:intergenic 40.0%
CGGATATTGAGCATTTGGAT+TGG - tig0006912:27891-27910 Msa1344850:intron 40.0%
! GGATACATCAAAGTGCTAAG+AGG + tig0006912:28089-28108 None:intergenic 40.0%
CTTAGCACTTTGATGTATCC+AGG - tig0006912:28089-28108 Msa1344850:intron 40.0%
ATCCAGGTATGCAAGAAACT+TGG - tig0006912:28105-28124 Msa1344850:intron 40.0%
TTCCATGAATCAATTGGTCC+TGG - tig0006912:28562-28581 Msa1344850:intron 40.0%
! TACCAGGACCAATTGATTCA+TGG + tig0006912:28567-28586 None:intergenic 40.0%
TCTTATCCTTTGCAAATGGC+TGG - tig0006912:28623-28642 Msa1344850:intron 40.0%
CTTTCATTGCTTAGACCAGA+TGG + tig0006912:28673-28692 None:intergenic 40.0%
TGAAGTTCAAGAGTTTGCGA+AGG + tig0006912:28752-28771 None:intergenic 40.0%
! ATCGATTTCACCCTCTTTGA+AGG - tig0006912:28804-28823 Msa1344850:intron 40.0%
TCGATTTCACCCTCTTTGAA+GGG - tig0006912:28805-28824 Msa1344850:intron 40.0%
ATGGTGAATGGTTTAGTGGA+GGG + tig0006912:28849-28868 None:intergenic 40.0%
AATGGTGAATGGTTTAGTGG+AGG + tig0006912:28850-28869 None:intergenic 40.0%
GAGAATGGTGAATGGTTTAG+TGG + tig0006912:28853-28872 None:intergenic 40.0%
TCACCATTCTCAAAGTGATC+TGG - tig0006912:28862-28881 Msa1344850:intron 40.0%
! ACACCAGATCACTTTGAGAA+TGG + tig0006912:28868-28887 None:intergenic 40.0%
!! TTGTGATTGGTGGTGGAAAA+TGG + tig0006912:29065-29084 None:intergenic 40.0%
GATTATGTTGTGATTGGTGG+TGG + tig0006912:29072-29091 None:intergenic 40.0%
! TGAGAGTGTGAAGTTATGAG+AGG - tig0006912:29218-29237 Msa1344850:five_prime_UTR 40.0%
! GAGAGTGTGAAGTTATGAGA+GGG - tig0006912:29219-29238 Msa1344850:five_prime_UTR 40.0%
CTTCTGCTTACTTCTTCCTC+CGG + tig0006912:24527-24546 Msa1344840:CDS 45.0%
! CATTAGGGTTTTCTCTTCCG+AGG - tig0006912:24993-25012 Msa1344850:intron 45.0%
CTGGTGTTTGGTTGTTCTTG+AGG - tig0006912:25037-25056 Msa1344850:intron 45.0%
! TTCTTTTGGTGAACGGTGAG+GGG - tig0006912:25338-25357 Msa1344850:intron 45.0%
!!! GTTTTGAGAGGCTAACCAAG+TGG + tig0006912:25491-25510 Msa1344840:three_prime_UTR 45.0%
! TGGGGCTTTGTGCAATTGTT+TGG + tig0006912:25673-25692 None:intergenic 45.0%
! AGTTTCACAGGTGGGTTTGA+AGG + tig0006912:25783-25802 None:intergenic 45.0%
TTGTGATGCAGCAGTTTCAC+AGG + tig0006912:25795-25814 None:intergenic 45.0%
!! ATTTTAACCAAACCGGGCAG+AGG - tig0006912:25818-25837 Msa1344850:intron 45.0%
GTGATTCCCATTTAGTGCAC+CGG - tig0006912:25970-25989 Msa1344850:intron 45.0%
TGATTCCCATTTAGTGCACC+GGG - tig0006912:25971-25990 Msa1344850:intron 45.0%
! ATCACTCTAAAAGGGCAACC+CGG + tig0006912:25992-26011 None:intergenic 45.0%
CCACAAAGCAACAAAGAGGA+TGG + tig0006912:26161-26180 None:intergenic 45.0%
!! CCATCCTCTTTGTTGCTTTG+TGG - tig0006912:26158-26177 Msa1344850:intron 45.0%
!! CTCTTTGTTGCTTTGTGGCA+GGG - tig0006912:26163-26182 Msa1344850:intron 45.0%
TCATGTAGCCTTCCACAGTT+GGG - tig0006912:26282-26301 Msa1344850:intron 45.0%
AGCATATGCACTTAGTTGCC+TGG + tig0006912:26607-26626 None:intergenic 45.0%
GCAAATGCAGGGACTTCATA+TGG + tig0006912:26649-26668 None:intergenic 45.0%
GTTCTTCTAAACAGCCTCAC+AGG - tig0006912:26895-26914 Msa1344850:intron 45.0%
AGGTGGAGTAAATCCCTACT+TGG + tig0006912:26956-26975 None:intergenic 45.0%
AAGTAGGGATTTACTCCACC+TGG - tig0006912:26955-26974 Msa1344850:intron 45.0%
! GCTAGGTGAGGTTGATTAGA+TGG - tig0006912:27206-27225 Msa1344850:intron 45.0%
!! CTCTCGTCTGGTTTGGTAAA+TGG + tig0006912:27386-27405 None:intergenic 45.0%
CATTTACCAAACCAGACGAG+AGG - tig0006912:27384-27403 Msa1344850:intron 45.0%
AAACTTCCTCTCGTCTGGTT+TGG + tig0006912:27393-27412 None:intergenic 45.0%
AAACCAGACGAGAGGAAGTT+TGG - tig0006912:27392-27411 Msa1344850:intron 45.0%
GAAGCATGTCTCACAAAGCA+TGG + tig0006912:27498-27517 None:intergenic 45.0%
GTCGAATGAAGTCTAGACTC+TGG - tig0006912:27539-27558 Msa1344850:intron 45.0%
!! GAAGTCTAGACTCTGGAGTA+TGG - tig0006912:27546-27565 Msa1344850:intron 45.0%
TGGAGTATGGACCCTAGTTT+AGG - tig0006912:27559-27578 Msa1344850:intron 45.0%
CACAAACACCAAGGTGAGAA+AGG + tig0006912:27755-27774 None:intergenic 45.0%
! CAAAGTGCTAAGAGGGGTAA+GGG + tig0006912:28081-28100 None:intergenic 45.0%
! TCAAAGTGCTAAGAGGGGTA+AGG + tig0006912:28082-28101 None:intergenic 45.0%
AGCCAAGTTTCTTGCATACC+TGG + tig0006912:28110-28129 None:intergenic 45.0%
ACAAACTGATTACGTGTCGC+CGG - tig0006912:28332-28351 Msa1344850:intron 45.0%
AGGTGACAACACAAATGAGC+CGG + tig0006912:28354-28373 None:intergenic 45.0%
GTTGAGCTGCATTGTGTACA+TGG + tig0006912:28414-28433 None:intergenic 45.0%
GCAATTCCAGCCATTTGCAA+AGG + tig0006912:28632-28651 None:intergenic 45.0%
TTGCAAATGGCTGGAATTGC+CGG - tig0006912:28632-28651 Msa1344850:intron 45.0%
TCGTCTCAAGGATCTGAGAA+TGG + tig0006912:28727-28746 None:intergenic 45.0%
CGAACTGTACCCTTCAAAGA+GGG + tig0006912:28817-28836 None:intergenic 45.0%
TCGAACTGTACCCTTCAAAG+AGG + tig0006912:28818-28837 None:intergenic 45.0%
TGTTGAGGTCTACCATGACA+AGG + tig0006912:29271-29290 None:intergenic 45.0%
!! ATTATATTAATAAATTTACT+TGG - tig0006912:26197-26216 Msa1344850:intron 5.0%
AAACAGAGGAGCAAAACCGG+AGG - tig0006912:24508-24527 Msa1344850:intron 50.0%
GACCAATACGAAGTTGGCGA+CGG + tig0006912:24629-24648 Msa1344840:CDS 50.0%
! TCATTTGGGGTTGTGAGGGT+TGG - tig0006912:24789-24808 Msa1344850:intron 50.0%
TAGCTCGACTATCCTCCACT+TGG - tig0006912:25473-25492 Msa1344850:intron 50.0%
TTGAGAGGCTAACCAAGTGG+AGG + tig0006912:25488-25507 Msa1344840:three_prime_UTR 50.0%
!! GCGGTTTGGTCAGGATGTTA+AGG + tig0006912:25552-25571 None:intergenic 50.0%
GTGTTAACCCACGTTTGTCG+CGG + tig0006912:25571-25590 None:intergenic 50.0%
GTGTTGCAAGGGACTCAAAC+GGG + tig0006912:25748-25767 None:intergenic 50.0%
! GGTGTTGCAAGGGACTCAAA+CGG + tig0006912:25749-25768 None:intergenic 50.0%
GATGCAGCAGTTTCACAGGT+GGG + tig0006912:25791-25810 None:intergenic 50.0%
TGATGCAGCAGTTTCACAGG+TGG + tig0006912:25792-25811 None:intergenic 50.0%
AGAGGTGGAGACCACACAAT+AGG - tig0006912:25836-25855 Msa1344850:intron 50.0%
GATCGATGCAGCCTATTGTG+TGG + tig0006912:25850-25869 None:intergenic 50.0%
CCTGCCACAAAGCAACAAAG+AGG + tig0006912:26165-26184 None:intergenic 50.0%
!! CCTCTTTGTTGCTTTGTGGC+AGG - tig0006912:26162-26181 Msa1344850:intron 50.0%
GTCATGTAGCCTTCCACAGT+TGG - tig0006912:26281-26300 Msa1344850:intron 50.0%
AGGGCTCTCTGGTGAATTTC+TGG + tig0006912:26323-26342 None:intergenic 50.0%
! GAGTGGGCTTTGTAAGGGAT+GGG + tig0006912:26382-26401 None:intergenic 50.0%
ACCTGACATAAGCACCTGTG+AGG + tig0006912:26912-26931 None:intergenic 50.0%
!! CTGGTTTGGTAAATGGGTCC+TGG + tig0006912:27379-27398 None:intergenic 50.0%
TCTCCAAACTTCCTCTCGTC+TGG + tig0006912:27398-27417 None:intergenic 50.0%
AATGGCTGGAATTGCCGGTA+AGG - tig0006912:28637-28656 Msa1344850:intron 50.0%
TTTGCGAAGGCTTCGTCTCA+AGG + tig0006912:28739-28758 None:intergenic 50.0%
TCTGGCTGTCATTACTGTCC+TGG + tig0006912:29003-29022 None:intergenic 50.0%
TCATGGTAGACCTCAACAGC+TGG - tig0006912:29273-29292 Msa1344850:five_prime_UTR 50.0%
GAGTCTCCTTACAGGTCCGA+CGG - tig0006912:24573-24592 Msa1344850:intron 55.0%
GGGGTGAGAGAGAAAGAGAG+AGG + tig0006912:24665-24684 Msa1344840:CDS 55.0%
GGGGAAAAGTCCCCTTGGAA+AGG - tig0006912:25357-25376 Msa1344850:intron 55.0%
!! ACGTTTGTCGCGGTTTGGTC+AGG + tig0006912:25561-25580 None:intergenic 55.0%
TGACCAAACCGCGACAAACG+TGG - tig0006912:25560-25579 Msa1344850:intron 55.0%
GACCAAACCGCGACAAACGT+GGG - tig0006912:25561-25580 Msa1344850:intron 55.0%
AACCCACGTTTGTCGCGGTT+TGG + tig0006912:25566-25585 None:intergenic 55.0%
!! AGCACGTGGTGGTGTTGCAA+GGG + tig0006912:25759-25778 None:intergenic 55.0%
TTAACCAAACCGGGCAGAGG+TGG - tig0006912:25821-25840 Msa1344850:intron 55.0%
GGCAACCCGGTGCACTAAAT+GGG + tig0006912:25979-25998 None:intergenic 55.0%
! GGAGTGGGCTTTGTAAGGGA+TGG + tig0006912:26383-26402 None:intergenic 55.0%
GCCTCACAGGTGCTTATGTC+AGG - tig0006912:26908-26927 Msa1344850:intron 55.0%
GTGCTAAGAGGGGTAAGGGA+GGG + tig0006912:28077-28096 None:intergenic 55.0%
AGTGCTAAGAGGGGTAAGGG+AGG + tig0006912:28078-28097 None:intergenic 55.0%
TGGAATTGCCGGTAAGGTCC+TGG - tig0006912:28643-28662 Msa1344850:intron 55.0%
ATGGGCATCCAGGACCTTAC+CGG + tig0006912:28654-28673 None:intergenic 55.0%
TAAGGTCCTGGATGCCCATC+TGG - tig0006912:28655-28674 Msa1344850:intron 55.0%
CTTAGACCAGATGGGCATCC+AGG + tig0006912:28664-28683 None:intergenic 55.0%
ACAGGTGGAACCAGCTGTTG+AGG + tig0006912:29286-29305 None:intergenic 55.0%
CGGAGGTGGAGTCTCCTTAC+AGG - tig0006912:24565-24584 Msa1344850:intron 60.0%
CAAGAGCCGTCGGACCTGTA+AGG + tig0006912:24582-24601 Msa1344840:CDS 60.0%
CGCCGTCGCCAACTTCGTAT+TGG - tig0006912:24624-24643 Msa1344850:intron 60.0%
GGTGAGGGGAAAAGTCCCCT+TGG - tig0006912:25352-25371 Msa1344850:intron 60.0%
!! CAGCACGTGGTGGTGTTGCA+AGG + tig0006912:25760-25779 None:intergenic 60.0%
GGTTTGAAGGCAGCACGTGG+TGG + tig0006912:25770-25789 None:intergenic 60.0%
GTGGGTTTGAAGGCAGCACG+TGG + tig0006912:25773-25792 None:intergenic 60.0%
GGGCAACCCGGTGCACTAAA+TGG + tig0006912:25980-25999 None:intergenic 60.0%
CATGGCTGCCCAACTGTGGA+AGG + tig0006912:26293-26312 None:intergenic 60.0%
CTTCCACAGTTGGGCAGCCA+TGG - tig0006912:26291-26310 Msa1344850:intron 60.0%
GATCCATGGCTGCCCAACTG+TGG + tig0006912:26297-26316 None:intergenic 60.0%
CAGAGTGGGAAAGGGCTCTC+TGG + tig0006912:26334-26353 None:intergenic 60.0%
ACGCCAGCGACAAGAGCCGT+CGG + tig0006912:24592-24611 Msa1344840:CDS 65.0%
GGCTCTTGTCGCTGGCGTAG+TGG - tig0006912:24594-24613 Msa1344850:intron 65.0%
GAAGTTGGCGACGGCGACAG+TGG + tig0006912:24620-24639 Msa1344840:CDS 65.0%
GTCTCCACCTCTGCCCGGTT+TGG + tig0006912:25828-25847 None:intergenic 65.0%
GTGTGGTCTCCACCTCTGCC+CGG + tig0006912:25833-25852 None:intergenic 65.0%
GGTCCGACGGCTCTTGTCGC+TGG - tig0006912:24586-24605 Msa1344850:intron 70.0%
Chromosome Type Strat End Strand Name
tig0006912 gene 24420 29308 24420 ID=Msa1344850;Name=Msa1344850
tig0006912 mRNA 24420 29308 24420 ID=Msa1344850-mRNA-1;Parent=Msa1344850;Name=Msa1344850-mRNA-1;_AED=0.44;_eAED=0.44;_QI=136|0|0.5|0.5|0|0|2|0|41
tig0006912 exon 24420 24446 24420 ID=Msa1344850-mRNA-1:exon:4752;Parent=Msa1344850-mRNA-1
tig0006912 exon 29074 29308 29074 ID=Msa1344850-mRNA-1:exon:4751;Parent=Msa1344850-mRNA-1
tig0006912 five_prime_UTR 29173 29308 29173 ID=Msa1344850-mRNA-1:five_prime_utr;Parent=Msa1344850-mRNA-1
tig0006912 CDS 29074 29172 29074 ID=Msa1344850-mRNA-1:cds;Parent=Msa1344850-mRNA-1
tig0006912 CDS 24420 24446 24420 ID=Msa1344850-mRNA-1:cds;Parent=Msa1344850-mRNA-1
Gene Sequence

>Msa1344850

ATGATCTATCGGAGGTGGAGTCTCCTTACAGGTCCGACGGCTCTTGTCGCTGGCGTAGTGGCCACTGTCGCCGTCGCCAACTTCGTATTGGTCAAGAATACCTCAACAGCTGGTTCCACCTGTTAG

Protein sequence

>Msa1344850

MIYRRWSLLTGPTALVAGVVATVAVANFVLVKNTSTAGSTC*