AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552810 MtrunA17_Chr4g0038321 98.148 54 1 0 1 54 1 54 2.91e-34 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552810 AT1G76200.1 82.927 41 7 0 13 53 11 51 3.58e-21 79.0

Find 31 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGACTCAAATGCTTC+TGG 0.192204 4_1:-49497012 None:intergenic
TTAACTTGGATGAAGCTTTA+TGG 0.212844 4_1:+49498933 Msa0552810:three_prime_UTR
ATCTCACCCTTCGTATTAAC+TGG 0.332005 4_1:-49496977 None:intergenic
ATGAATTGTTACGCCTTTGT+AGG 0.404079 4_1:-49497084 None:intergenic
CAGGCTTCAGCTGCAAAATC+AGG 0.411498 4_1:+49498771 Msa0552810:intron
CTCAAACATAGCTATGTTCA+TGG 0.414271 4_1:-49498899 None:intergenic
TTCATCCAAGTTAACAAGTA+AGG 0.435214 4_1:-49498924 None:intergenic
GACAGCACACAAGCCTTTGC+CGG 0.455205 4_1:-49497132 None:intergenic
GAGCACCTTACTTGTTAACT+TGG 0.460301 4_1:+49498919 Msa0552810:three_prime_UTR
GCAAGATGCTCCTGTAGTAT+TGG 0.487985 4_1:+49497289 Msa0552810:CDS
GTGACAGTGTGCCAACGCTT+AGG 0.492746 4_1:-49497110 None:intergenic
TGGCACACTGTCACCGGCAA+AGG 0.504987 4_1:+49497119 Msa0552810:CDS
AAAGAGATGGGTGGAGGACA+TGG 0.512507 4_1:+49497041 Msa0552810:exon
CAGAGAGAAATCGAAAGAGA+TGG 0.522927 4_1:+49497028 Msa0552810:exon
AAGCGTTGGCACACTGTCAC+CGG 0.526005 4_1:+49497113 Msa0552810:CDS
GGAGGACATGGACATGGACA+TGG 0.545890 4_1:+49497053 Msa0552810:CDS
AGAGAGAAATCGAAAGAGAT+GGG 0.557927 4_1:+49497029 Msa0552810:exon
GAGAGTGTTACCAATACTAC+AGG 0.564259 4_1:-49497299 None:intergenic
AAATCGAAAGAGATGGGTGG+AGG 0.575752 4_1:+49497035 Msa0552810:exon
AAGGCTTGTGTGCTGTCATG+TGG 0.588655 4_1:+49497138 Msa0552810:CDS
CAATTCATCAACCTAAGCGT+TGG 0.601027 4_1:+49497099 Msa0552810:CDS
GTTACTCCAGTTAATACGAA+GGG 0.607142 4_1:+49496971 None:intergenic
ATGGGTGGAGGACATGGACA+TGG 0.616134 4_1:+49497047 Msa0552810:CDS
TAAACTTCTCACAAGAAACA+TGG 0.636973 4_1:-49498979 None:intergenic
AGTTACTCCAGTTAATACGA+AGG 0.639019 4_1:+49496970 None:intergenic
GAGAAATCGAAAGAGATGGG+TGG 0.645016 4_1:+49497032 Msa0552810:exon
TCAGGAGCATCAGAACGTGA+AGG 0.665028 4_1:+49498789 Msa0552810:CDS
CATGGCGGAACAACCTACAA+AGG 0.672410 4_1:+49497071 Msa0552810:CDS
AGTTTGTGTCAACTACGACA+AGG 0.676732 4_1:+49499015 Msa0552810:three_prime_UTR
GGACATGGACATGGACATGG+CGG 0.689490 4_1:+49497056 Msa0552810:CDS
CGAAGGGTGAGATCTAGTGT+CGG 0.690985 4_1:+49496987 Msa0552810:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTAATTGTTTTTCTT+AGG + chr4_1:49497243-49497262 Msa0552810:intron 10.0%
!!! TTAAATTAATTGTTTTTCTT+AGG + chr4_1:49497243-49497262 Msa0552810:intron 10.0%
!! TAACGAAATTGAAAAAATTA+GGG - chr4_1:49497193-49497212 None:intergenic 15.0%
!! TTAACGAAATTGAAAAAATT+AGG - chr4_1:49497194-49497213 None:intergenic 15.0%
!!! ATTTGTTTTCTTTTACATTT+AGG + chr4_1:49497385-49497404 Msa0552810:intron 15.0%
!!! TTTGTTTTCTTTTACATTTA+GGG + chr4_1:49497386-49497405 Msa0552810:intron 15.0%
!! ATTTGATATAATTGACATAT+CGG - chr4_1:49497585-49497604 None:intergenic 15.0%
!!! AAATAATAGTATTAGTTCTT+GGG - chr4_1:49498403-49498422 None:intergenic 15.0%
!!! TAAATAATAGTATTAGTTCT+TGG - chr4_1:49498404-49498423 None:intergenic 15.0%
!! AATTCATTCATATTTAGTAA+AGG + chr4_1:49498603-49498622 Msa0552810:intron 15.0%
!! ATTAATTATTTCATTGTCTA+CGG - chr4_1:49498690-49498709 None:intergenic 15.0%
!! TAACGAAATTGAAAAAATTA+GGG - chr4_1:49497193-49497212 None:intergenic 15.0%
!! TTAACGAAATTGAAAAAATT+AGG - chr4_1:49497194-49497213 None:intergenic 15.0%
!!! ATTTGTTTTCTTTTACATTT+AGG + chr4_1:49497385-49497404 Msa0552810:intron 15.0%
!!! TTTGTTTTCTTTTACATTTA+GGG + chr4_1:49497386-49497405 Msa0552810:intron 15.0%
!! ATTTGATATAATTGACATAT+CGG - chr4_1:49497585-49497604 None:intergenic 15.0%
!!! AAATAATAGTATTAGTTCTT+GGG - chr4_1:49498403-49498422 None:intergenic 15.0%
!!! TAAATAATAGTATTAGTTCT+TGG - chr4_1:49498404-49498423 None:intergenic 15.0%
!! AATTCATTCATATTTAGTAA+AGG + chr4_1:49498603-49498622 Msa0552810:intron 15.0%
!! ATTAATTATTTCATTGTCTA+CGG - chr4_1:49498690-49498709 None:intergenic 15.0%
!!! TAATTGTTTTTCTTAGGTTT+TGG + chr4_1:49497249-49497268 Msa0552810:intron 20.0%
!!! AATTGTTTTTCTTAGGTTTT+GGG + chr4_1:49497250-49497269 Msa0552810:intron 20.0%
!! ATACAATATTGACAAAAAAG+TGG + chr4_1:49497625-49497644 Msa0552810:intron 20.0%
!!! TAATTTTCAAAGTACATAGT+AGG - chr4_1:49498311-49498330 None:intergenic 20.0%
!!! TACTATGTACTTTGAAAATT+AGG + chr4_1:49498310-49498329 Msa0552810:intron 20.0%
!! CTAAATATGAATGAATTAAC+AGG - chr4_1:49498600-49498619 None:intergenic 20.0%
!!! TAACATATGTATTGATTTCT+TGG + chr4_1:49498748-49498767 Msa0552810:intron 20.0%
!!! TAATTGTTTTTCTTAGGTTT+TGG + chr4_1:49497249-49497268 Msa0552810:intron 20.0%
!!! AATTGTTTTTCTTAGGTTTT+GGG + chr4_1:49497250-49497269 Msa0552810:intron 20.0%
!! ATACAATATTGACAAAAAAG+TGG + chr4_1:49497625-49497644 Msa0552810:intron 20.0%
!!! TAATTTTCAAAGTACATAGT+AGG - chr4_1:49498311-49498330 None:intergenic 20.0%
!!! TACTATGTACTTTGAAAATT+AGG + chr4_1:49498310-49498329 Msa0552810:intron 20.0%
!! CTAAATATGAATGAATTAAC+AGG - chr4_1:49498600-49498619 None:intergenic 20.0%
!!! TAACATATGTATTGATTTCT+TGG + chr4_1:49498748-49498767 Msa0552810:intron 20.0%
! TAAGAAATGAAAAGAGAAAG+AGG - chr4_1:49497170-49497189 None:intergenic 25.0%
! TACTCATTCAATTCACAATT+CGG - chr4_1:49497513-49497532 None:intergenic 25.0%
! ATTATATCAAATGACATGTG+TGG + chr4_1:49497593-49497612 Msa0552810:intron 25.0%
! TTATATCAAATGACATGTGT+GGG + chr4_1:49497594-49497613 Msa0552810:intron 25.0%
! GTGATTCATTAGAATGAATT+GGG + chr4_1:49497670-49497689 Msa0552810:intron 25.0%
! TGTGTATCTATCTATCTATT+TGG - chr4_1:49497716-49497735 None:intergenic 25.0%
! AACTCTGGTATTCAAATATT+TGG + chr4_1:49497972-49497991 Msa0552810:intron 25.0%
!! GTAATTTGTGTATCATACAT+TGG + chr4_1:49498056-49498075 Msa0552810:intron 25.0%
!! TCTAAAAGTGTAGTAAAAGT+TGG + chr4_1:49498116-49498135 Msa0552810:intron 25.0%
! GAAGAAAAAAAAATCTCTAC+CGG - chr4_1:49498170-49498189 None:intergenic 25.0%
!!! ATTTGTTGACCTTTTCTTAT+GGG + chr4_1:49498333-49498352 Msa0552810:intron 25.0%
!! CACTTTCTTCAATTTTCATA+TGG + chr4_1:49498503-49498522 Msa0552810:intron 25.0%
! TGCAAATGTGAAAATAAAGA+GGG - chr4_1:49498569-49498588 None:intergenic 25.0%
! TTGCAAATGTGAAAATAAAG+AGG - chr4_1:49498570-49498589 None:intergenic 25.0%
! TTTGACAATATTTGTAGAAG+TGG + chr4_1:49498656-49498675 Msa0552810:intron 25.0%
! TTGACAATATTTGTAGAAGT+GGG + chr4_1:49498657-49498676 Msa0552810:intron 25.0%
! TAAGAAATGAAAAGAGAAAG+AGG - chr4_1:49497170-49497189 None:intergenic 25.0%
! TACTCATTCAATTCACAATT+CGG - chr4_1:49497513-49497532 None:intergenic 25.0%
! ATTATATCAAATGACATGTG+TGG + chr4_1:49497593-49497612 Msa0552810:intron 25.0%
! TTATATCAAATGACATGTGT+GGG + chr4_1:49497594-49497613 Msa0552810:intron 25.0%
! GTGATTCATTAGAATGAATT+GGG + chr4_1:49497670-49497689 Msa0552810:intron 25.0%
! TGTGTATCTATCTATCTATT+TGG - chr4_1:49497716-49497735 None:intergenic 25.0%
! AACTCTGGTATTCAAATATT+TGG + chr4_1:49497972-49497991 Msa0552810:intron 25.0%
!! GTAATTTGTGTATCATACAT+TGG + chr4_1:49498056-49498075 Msa0552810:intron 25.0%
!! TCTAAAAGTGTAGTAAAAGT+TGG + chr4_1:49498116-49498135 Msa0552810:intron 25.0%
! GAAGAAAAAAAAATCTCTAC+CGG - chr4_1:49498170-49498189 None:intergenic 25.0%
!!! ATTTGTTGACCTTTTCTTAT+GGG + chr4_1:49498333-49498352 Msa0552810:intron 25.0%
!! CACTTTCTTCAATTTTCATA+TGG + chr4_1:49498503-49498522 Msa0552810:intron 25.0%
! TGCAAATGTGAAAATAAAGA+GGG - chr4_1:49498569-49498588 None:intergenic 25.0%
! TTGCAAATGTGAAAATAAAG+AGG - chr4_1:49498570-49498589 None:intergenic 25.0%
! TTTGACAATATTTGTAGAAG+TGG + chr4_1:49498656-49498675 Msa0552810:intron 25.0%
! TTGACAATATTTGTAGAAGT+GGG + chr4_1:49498657-49498676 Msa0552810:intron 25.0%
!! TTTTCTTTTACATTTAGGGC+TGG + chr4_1:49497390-49497409 Msa0552810:intron 30.0%
! AGACGAGCATTAATTTTCTT+AGG + chr4_1:49497445-49497464 Msa0552810:intron 30.0%
CAATTCACAATTCGGAAAAA+AGG - chr4_1:49497505-49497524 None:intergenic 30.0%
GGTGATTCATTAGAATGAAT+TGG + chr4_1:49497669-49497688 Msa0552810:intron 30.0%
! TTTTATATGACAAAGTTCCC+AGG + chr4_1:49497907-49497926 Msa0552810:intron 30.0%
TTTATATGACAAAGTTCCCA+GGG + chr4_1:49497908-49497927 Msa0552810:intron 30.0%
!!! GATTTGTTGACCTTTTCTTA+TGG + chr4_1:49498332-49498351 Msa0552810:intron 30.0%
! GTATACCTTTTAATGAAGCA+AGG + chr4_1:49498525-49498544 Msa0552810:intron 30.0%
ATTGTCCTTGCTTCATTAAA+AGG - chr4_1:49498533-49498552 None:intergenic 30.0%
TGACAATATTTGTAGAAGTG+GGG + chr4_1:49498658-49498677 Msa0552810:intron 30.0%
!! ATATGTATTGATTTCTTGGC+AGG + chr4_1:49498752-49498771 Msa0552810:intron 30.0%
TTCATCCAAGTTAACAAGTA+AGG - chr4_1:49498927-49498946 None:intergenic 30.0%
! TTAACTTGGATGAAGCTTTA+TGG + chr4_1:49498933-49498952 Msa0552810:three_prime_UTR 30.0%
TAAACTTCTCACAAGAAACA+TGG - chr4_1:49498982-49499001 None:intergenic 30.0%
ACAACACGATATTATAGTGT+AGG + chr4_1:49499057-49499076 Msa0552810:three_prime_UTR 30.0%
!! TTTTCTTTTACATTTAGGGC+TGG + chr4_1:49497390-49497409 Msa0552810:intron 30.0%
! AGACGAGCATTAATTTTCTT+AGG + chr4_1:49497445-49497464 Msa0552810:intron 30.0%
CAATTCACAATTCGGAAAAA+AGG - chr4_1:49497505-49497524 None:intergenic 30.0%
GGTGATTCATTAGAATGAAT+TGG + chr4_1:49497669-49497688 Msa0552810:intron 30.0%
! TTTTATATGACAAAGTTCCC+AGG + chr4_1:49497907-49497926 Msa0552810:intron 30.0%
TTTATATGACAAAGTTCCCA+GGG + chr4_1:49497908-49497927 Msa0552810:intron 30.0%
!!! GATTTGTTGACCTTTTCTTA+TGG + chr4_1:49498332-49498351 Msa0552810:intron 30.0%
! GTATACCTTTTAATGAAGCA+AGG + chr4_1:49498525-49498544 Msa0552810:intron 30.0%
ATTGTCCTTGCTTCATTAAA+AGG - chr4_1:49498533-49498552 None:intergenic 30.0%
TGACAATATTTGTAGAAGTG+GGG + chr4_1:49498658-49498677 Msa0552810:intron 30.0%
!! ATATGTATTGATTTCTTGGC+AGG + chr4_1:49498752-49498771 Msa0552810:intron 30.0%
TTCATCCAAGTTAACAAGTA+AGG - chr4_1:49498927-49498946 None:intergenic 30.0%
! TTAACTTGGATGAAGCTTTA+TGG + chr4_1:49498933-49498952 Msa0552810:three_prime_UTR 30.0%
TAAACTTCTCACAAGAAACA+TGG - chr4_1:49498982-49499001 None:intergenic 30.0%
AGAGAGAAATCGAAAGAGAT+GGG + chr4_1:49497029-49497048 Msa0552810:exon 35.0%
ATGAATTGTTACGCCTTTGT+AGG - chr4_1:49497087-49497106 None:intergenic 35.0%
TGGTTTCCTACACTATGTTT+AGG + chr4_1:49497645-49497664 Msa0552810:intron 35.0%
TTTCCTACACTATGTTTAGG+CGG + chr4_1:49497648-49497667 Msa0552810:intron 35.0%
GATAGATAGATACACACTAG+AGG + chr4_1:49497720-49497739 Msa0552810:intron 35.0%
TTTATACACCCAATGCATCT+AGG + chr4_1:49497834-49497853 Msa0552810:intron 35.0%
TTATATGACAAAGTTCCCAG+GGG + chr4_1:49497909-49497928 Msa0552810:intron 35.0%
!! AAAGTTGGTATGTACATGTG+TGG + chr4_1:49498131-49498150 Msa0552810:intron 35.0%
GTGTGGTATTCATGATTTAC+CGG + chr4_1:49498148-49498167 Msa0552810:intron 35.0%
AGACATACTCCCATAAGAAA+AGG - chr4_1:49498345-49498364 None:intergenic 35.0%
AAGTACGATTTATCACCAAC+AGG + chr4_1:49498423-49498442 Msa0552810:intron 35.0%
AGAAGTTTAGTATGACCTGT+TGG - chr4_1:49498441-49498460 None:intergenic 35.0%
AATATTTGTAGAAGTGGGGT+TGG + chr4_1:49498662-49498681 Msa0552810:intron 35.0%
ATATTTGTAGAAGTGGGGTT+GGG + chr4_1:49498663-49498682 Msa0552810:intron 35.0%
CTCAAACATAGCTATGTTCA+TGG - chr4_1:49498902-49498921 None:intergenic 35.0%
AGAGAGAAATCGAAAGAGAT+GGG + chr4_1:49497029-49497048 Msa0552810:exon 35.0%
ATGAATTGTTACGCCTTTGT+AGG - chr4_1:49497087-49497106 None:intergenic 35.0%
TGGTTTCCTACACTATGTTT+AGG + chr4_1:49497645-49497664 Msa0552810:intron 35.0%
TTTCCTACACTATGTTTAGG+CGG + chr4_1:49497648-49497667 Msa0552810:intron 35.0%
GATAGATAGATACACACTAG+AGG + chr4_1:49497720-49497739 Msa0552810:intron 35.0%
TTTATACACCCAATGCATCT+AGG + chr4_1:49497834-49497853 Msa0552810:intron 35.0%
TTATATGACAAAGTTCCCAG+GGG + chr4_1:49497909-49497928 Msa0552810:intron 35.0%
!! AAAGTTGGTATGTACATGTG+TGG + chr4_1:49498131-49498150 Msa0552810:intron 35.0%
GTGTGGTATTCATGATTTAC+CGG + chr4_1:49498148-49498167 Msa0552810:intron 35.0%
AGACATACTCCCATAAGAAA+AGG - chr4_1:49498345-49498364 None:intergenic 35.0%
AAGTACGATTTATCACCAAC+AGG + chr4_1:49498423-49498442 Msa0552810:intron 35.0%
AGAAGTTTAGTATGACCTGT+TGG - chr4_1:49498441-49498460 None:intergenic 35.0%
AATATTTGTAGAAGTGGGGT+TGG + chr4_1:49498662-49498681 Msa0552810:intron 35.0%
ATATTTGTAGAAGTGGGGTT+GGG + chr4_1:49498663-49498682 Msa0552810:intron 35.0%
CTCAAACATAGCTATGTTCA+TGG - chr4_1:49498902-49498921 None:intergenic 35.0%
CAGAGAGAAATCGAAAGAGA+TGG + chr4_1:49497028-49497047 Msa0552810:exon 40.0%
CAATTCATCAACCTAAGCGT+TGG + chr4_1:49497099-49497118 Msa0552810:CDS 40.0%
!! GAGAGTGTTACCAATACTAC+AGG - chr4_1:49497302-49497321 None:intergenic 40.0%
!! TCTTTTACATTTAGGGCTGG+AGG + chr4_1:49497393-49497412 Msa0552810:intron 40.0%
! CAAATGACATGTGTGGGTTA+TGG + chr4_1:49497600-49497619 Msa0552810:intron 40.0%
CCTGTGACGTTTCAAAATCT+GGG + chr4_1:49497881-49497900 Msa0552810:intron 40.0%
GGGACAAATAAGTGTAACTC+TGG + chr4_1:49497957-49497976 Msa0552810:intron 40.0%
ACATCATGTGGAACTATCAG+GGG - chr4_1:49498245-49498264 None:intergenic 40.0%
GACATCATGTGGAACTATCA+GGG - chr4_1:49498246-49498265 None:intergenic 40.0%
AGGGGTTAAATCAGGTTCAA+CGG - chr4_1:49498282-49498301 None:intergenic 40.0%
AGTACATAGTAGGCTTAGCA+GGG - chr4_1:49498301-49498320 None:intergenic 40.0%
AAGTACATAGTAGGCTTAGC+AGG - chr4_1:49498302-49498321 None:intergenic 40.0%
TATTTGTAGAAGTGGGGTTG+GGG + chr4_1:49498664-49498683 Msa0552810:intron 40.0%
! GAGCACCTTACTTGTTAACT+TGG + chr4_1:49498919-49498938 Msa0552810:three_prime_UTR 40.0%
AGTTTGTGTCAACTACGACA+AGG + chr4_1:49499015-49499034 Msa0552810:three_prime_UTR 40.0%
CAGAGAGAAATCGAAAGAGA+TGG + chr4_1:49497028-49497047 Msa0552810:exon 40.0%
CAATTCATCAACCTAAGCGT+TGG + chr4_1:49497099-49497118 Msa0552810:CDS 40.0%
!! GAGAGTGTTACCAATACTAC+AGG - chr4_1:49497302-49497321 None:intergenic 40.0%
!! TCTTTTACATTTAGGGCTGG+AGG + chr4_1:49497393-49497412 Msa0552810:intron 40.0%
! CAAATGACATGTGTGGGTTA+TGG + chr4_1:49497600-49497619 Msa0552810:intron 40.0%
CCTGTGACGTTTCAAAATCT+GGG + chr4_1:49497881-49497900 Msa0552810:intron 40.0%
GGGACAAATAAGTGTAACTC+TGG + chr4_1:49497957-49497976 Msa0552810:intron 40.0%
ACATCATGTGGAACTATCAG+GGG - chr4_1:49498245-49498264 None:intergenic 40.0%
GACATCATGTGGAACTATCA+GGG - chr4_1:49498246-49498265 None:intergenic 40.0%
AGGGGTTAAATCAGGTTCAA+CGG - chr4_1:49498282-49498301 None:intergenic 40.0%
AGTACATAGTAGGCTTAGCA+GGG - chr4_1:49498301-49498320 None:intergenic 40.0%
AAGTACATAGTAGGCTTAGC+AGG - chr4_1:49498302-49498321 None:intergenic 40.0%
TATTTGTAGAAGTGGGGTTG+GGG + chr4_1:49498664-49498683 Msa0552810:intron 40.0%
! GAGCACCTTACTTGTTAACT+TGG + chr4_1:49498919-49498938 Msa0552810:three_prime_UTR 40.0%
AGTTTGTGTCAACTACGACA+AGG + chr4_1:49499015-49499034 Msa0552810:three_prime_UTR 40.0%
CTCTCTGACTCAAATGCTTC+TGG - chr4_1:49497015-49497034 None:intergenic 45.0%
GAGAAATCGAAAGAGATGGG+TGG + chr4_1:49497032-49497051 Msa0552810:exon 45.0%
AAATCGAAAGAGATGGGTGG+AGG + chr4_1:49497035-49497054 Msa0552810:exon 45.0%
GCAAGATGCTCCTGTAGTAT+TGG + chr4_1:49497289-49497308 Msa0552810:CDS 45.0%
TCACCGCCTAAACATAGTGT+AGG - chr4_1:49497654-49497673 None:intergenic 45.0%
CTCCTAGTCCTAGATGCATT+GGG - chr4_1:49497845-49497864 None:intergenic 45.0%
! CAATGCATCTAGGACTAGGA+GGG + chr4_1:49497844-49497863 Msa0552810:intron 45.0%
GCCTGTGACGTTTCAAAATC+TGG + chr4_1:49497880-49497899 Msa0552810:intron 45.0%
!!! CCCAGATTTTGAAACGTCAC+AGG - chr4_1:49497884-49497903 None:intergenic 45.0%
TGGACACTGGATGGAATAGT+GGG + chr4_1:49497932-49497951 Msa0552810:intron 45.0%
GGACATCATGTGGAACTATC+AGG - chr4_1:49498247-49498266 None:intergenic 45.0%
AGGTTCAACGGAAGAAGATC+GGG - chr4_1:49498270-49498289 None:intergenic 45.0%
CAGGTTCAACGGAAGAAGAT+CGG - chr4_1:49498271-49498290 None:intergenic 45.0%
GTACATAGTAGGCTTAGCAG+GGG - chr4_1:49498300-49498319 None:intergenic 45.0%
CTCTCTGACTCAAATGCTTC+TGG - chr4_1:49497015-49497034 None:intergenic 45.0%
GAGAAATCGAAAGAGATGGG+TGG + chr4_1:49497032-49497051 Msa0552810:exon 45.0%
AAATCGAAAGAGATGGGTGG+AGG + chr4_1:49497035-49497054 Msa0552810:exon 45.0%
GCAAGATGCTCCTGTAGTAT+TGG + chr4_1:49497289-49497308 Msa0552810:CDS 45.0%
TCACCGCCTAAACATAGTGT+AGG - chr4_1:49497654-49497673 None:intergenic 45.0%
CTCCTAGTCCTAGATGCATT+GGG - chr4_1:49497845-49497864 None:intergenic 45.0%
! CAATGCATCTAGGACTAGGA+GGG + chr4_1:49497844-49497863 Msa0552810:intron 45.0%
GCCTGTGACGTTTCAAAATC+TGG + chr4_1:49497880-49497899 Msa0552810:intron 45.0%
!!! CCCAGATTTTGAAACGTCAC+AGG - chr4_1:49497884-49497903 None:intergenic 45.0%
TGGACACTGGATGGAATAGT+GGG + chr4_1:49497932-49497951 Msa0552810:intron 45.0%
GGACATCATGTGGAACTATC+AGG - chr4_1:49498247-49498266 None:intergenic 45.0%
AGGTTCAACGGAAGAAGATC+GGG - chr4_1:49498270-49498289 None:intergenic 45.0%
CAGGTTCAACGGAAGAAGAT+CGG - chr4_1:49498271-49498290 None:intergenic 45.0%
GTACATAGTAGGCTTAGCAG+GGG - chr4_1:49498300-49498319 None:intergenic 45.0%
CGAAGGGTGAGATCTAGTGT+CGG + chr4_1:49496987-49497006 Msa0552810:five_prime_UTR 50.0%
AAAGAGATGGGTGGAGGACA+TGG + chr4_1:49497041-49497060 Msa0552810:exon 50.0%
! CATGGCGGAACAACCTACAA+AGG + chr4_1:49497071-49497090 Msa0552810:CDS 50.0%
AAGGCTTGTGTGCTGTCATG+TGG + chr4_1:49497138-49497157 Msa0552810:CDS 50.0%
! CACCCAATGCATCTAGGACT+AGG + chr4_1:49497840-49497859 Msa0552810:intron 50.0%
CCTCCTAGTCCTAGATGCAT+TGG - chr4_1:49497846-49497865 None:intergenic 50.0%
! CCAATGCATCTAGGACTAGG+AGG + chr4_1:49497843-49497862 Msa0552810:intron 50.0%
! CATCTAGGACTAGGAGGGTT+TGG + chr4_1:49497849-49497868 Msa0552810:intron 50.0%
TATGACAAAGTTCCCAGGGG+TGG + chr4_1:49497912-49497931 Msa0552810:intron 50.0%
GTGGACACTGGATGGAATAG+TGG + chr4_1:49497931-49497950 Msa0552810:intron 50.0%
! ACACTGGATGGAATAGTGGG+AGG + chr4_1:49497935-49497954 Msa0552810:intron 50.0%
! CACTGGATGGAATAGTGGGA+GGG + chr4_1:49497936-49497955 Msa0552810:intron 50.0%
! ACTGGATGGAATAGTGGGAG+GGG + chr4_1:49497937-49497956 Msa0552810:intron 50.0%
TCATGTGGAACTATCAGGGG+TGG - chr4_1:49498242-49498261 None:intergenic 50.0%
GTTCAACGGAAGAAGATCGG+GGG - chr4_1:49498268-49498287 None:intergenic 50.0%
GGTTCAACGGAAGAAGATCG+GGG - chr4_1:49498269-49498288 None:intergenic 50.0%
GGCTTAGCAGGGGTTAAATC+AGG - chr4_1:49498290-49498309 None:intergenic 50.0%
CAGGCTTCAGCTGCAAAATC+AGG + chr4_1:49498771-49498790 Msa0552810:intron 50.0%
!! TCAGGAGCATCAGAACGTGA+AGG + chr4_1:49498789-49498808 Msa0552810:CDS 50.0%
CGAAGGGTGAGATCTAGTGT+CGG + chr4_1:49496987-49497006 Msa0552810:five_prime_UTR 50.0%
AAAGAGATGGGTGGAGGACA+TGG + chr4_1:49497041-49497060 Msa0552810:exon 50.0%
! CATGGCGGAACAACCTACAA+AGG + chr4_1:49497071-49497090 Msa0552810:CDS 50.0%
AAGGCTTGTGTGCTGTCATG+TGG + chr4_1:49497138-49497157 Msa0552810:CDS 50.0%
! CACCCAATGCATCTAGGACT+AGG + chr4_1:49497840-49497859 Msa0552810:intron 50.0%
CCTCCTAGTCCTAGATGCAT+TGG - chr4_1:49497846-49497865 None:intergenic 50.0%
! CCAATGCATCTAGGACTAGG+AGG + chr4_1:49497843-49497862 Msa0552810:intron 50.0%
! CATCTAGGACTAGGAGGGTT+TGG + chr4_1:49497849-49497868 Msa0552810:intron 50.0%
TATGACAAAGTTCCCAGGGG+TGG + chr4_1:49497912-49497931 Msa0552810:intron 50.0%
GTGGACACTGGATGGAATAG+TGG + chr4_1:49497931-49497950 Msa0552810:intron 50.0%
! ACACTGGATGGAATAGTGGG+AGG + chr4_1:49497935-49497954 Msa0552810:intron 50.0%
! CACTGGATGGAATAGTGGGA+GGG + chr4_1:49497936-49497955 Msa0552810:intron 50.0%
! ACTGGATGGAATAGTGGGAG+GGG + chr4_1:49497937-49497956 Msa0552810:intron 50.0%
TCATGTGGAACTATCAGGGG+TGG - chr4_1:49498242-49498261 None:intergenic 50.0%
GTTCAACGGAAGAAGATCGG+GGG - chr4_1:49498268-49498287 None:intergenic 50.0%
GGTTCAACGGAAGAAGATCG+GGG - chr4_1:49498269-49498288 None:intergenic 50.0%
GGCTTAGCAGGGGTTAAATC+AGG - chr4_1:49498290-49498309 None:intergenic 50.0%
CAGGCTTCAGCTGCAAAATC+AGG + chr4_1:49498771-49498790 Msa0552810:intron 50.0%
!! TCAGGAGCATCAGAACGTGA+AGG + chr4_1:49498789-49498808 Msa0552810:CDS 50.0%
ATGGGTGGAGGACATGGACA+TGG + chr4_1:49497047-49497066 Msa0552810:CDS 55.0%
GGAGGACATGGACATGGACA+TGG + chr4_1:49497053-49497072 Msa0552810:CDS 55.0%
GGACATGGACATGGACATGG+CGG + chr4_1:49497056-49497075 Msa0552810:CDS 55.0%
GTGACAGTGTGCCAACGCTT+AGG - chr4_1:49497113-49497132 None:intergenic 55.0%
!! AAGCGTTGGCACACTGTCAC+CGG + chr4_1:49497113-49497132 Msa0552810:CDS 55.0%
GACAGCACACAAGCCTTTGC+CGG - chr4_1:49497135-49497154 None:intergenic 55.0%
!! TTTAGGGCTGGAGGCATCCT+TGG + chr4_1:49497402-49497421 Msa0552810:intron 55.0%
!! TTAGGGCTGGAGGCATCCTT+GGG + chr4_1:49497403-49497422 Msa0552810:intron 55.0%
TGATCACCATGACCCTCCCA+AGG - chr4_1:49497422-49497441 None:intergenic 55.0%
TGGGAGGGTCATGGTGATCA+TGG + chr4_1:49497422-49497441 Msa0552810:intron 55.0%
! TCCTAGGTGTGGCTCTATGG+TGG - chr4_1:49498211-49498230 None:intergenic 55.0%
ACCATAGAGCCACACCTAGG+AGG + chr4_1:49498210-49498229 Msa0552810:intron 55.0%
GAAGATCGGGGGACATCATG+TGG - chr4_1:49498257-49498276 None:intergenic 55.0%
ATGGGTGGAGGACATGGACA+TGG + chr4_1:49497047-49497066 Msa0552810:CDS 55.0%
GGAGGACATGGACATGGACA+TGG + chr4_1:49497053-49497072 Msa0552810:CDS 55.0%
GGACATGGACATGGACATGG+CGG + chr4_1:49497056-49497075 Msa0552810:CDS 55.0%
GTGACAGTGTGCCAACGCTT+AGG - chr4_1:49497113-49497132 None:intergenic 55.0%
!! AAGCGTTGGCACACTGTCAC+CGG + chr4_1:49497113-49497132 Msa0552810:CDS 55.0%
GACAGCACACAAGCCTTTGC+CGG - chr4_1:49497135-49497154 None:intergenic 55.0%
!! TTTAGGGCTGGAGGCATCCT+TGG + chr4_1:49497402-49497421 Msa0552810:intron 55.0%
!! TTAGGGCTGGAGGCATCCTT+GGG + chr4_1:49497403-49497422 Msa0552810:intron 55.0%
TGATCACCATGACCCTCCCA+AGG - chr4_1:49497422-49497441 None:intergenic 55.0%
TGGGAGGGTCATGGTGATCA+TGG + chr4_1:49497422-49497441 Msa0552810:intron 55.0%
! TCCTAGGTGTGGCTCTATGG+TGG - chr4_1:49498211-49498230 None:intergenic 55.0%
ACCATAGAGCCACACCTAGG+AGG + chr4_1:49498210-49498229 Msa0552810:intron 55.0%
GAAGATCGGGGGACATCATG+TGG - chr4_1:49498257-49498276 None:intergenic 55.0%
TGGCACACTGTCACCGGCAA+AGG + chr4_1:49497119-49497138 Msa0552810:CDS 60.0%
AGGCATCCTTGGGAGGGTCA+TGG + chr4_1:49497413-49497432 Msa0552810:intron 60.0%
AAGTTCCCAGGGGTGGACAC+TGG + chr4_1:49497919-49497938 Msa0552810:intron 60.0%
TCCATCCAGTGTCCACCCCT+GGG - chr4_1:49497927-49497946 None:intergenic 60.0%
TTCCATCCAGTGTCCACCCC+TGG - chr4_1:49497928-49497947 None:intergenic 60.0%
GCCACCATAGAGCCACACCT+AGG + chr4_1:49498207-49498226 Msa0552810:intron 60.0%
! GCCTCCTAGGTGTGGCTCTA+TGG - chr4_1:49498214-49498233 None:intergenic 60.0%
AGAGCCACACCTAGGAGGCT+AGG + chr4_1:49498215-49498234 Msa0552810:intron 60.0%
TGGACCTAGCCTCCTAGGTG+TGG - chr4_1:49498222-49498241 None:intergenic 60.0%
TGGCACACTGTCACCGGCAA+AGG + chr4_1:49497119-49497138 Msa0552810:CDS 60.0%
AGGCATCCTTGGGAGGGTCA+TGG + chr4_1:49497413-49497432 Msa0552810:intron 60.0%
AAGTTCCCAGGGGTGGACAC+TGG + chr4_1:49497919-49497938 Msa0552810:intron 60.0%
TCCATCCAGTGTCCACCCCT+GGG - chr4_1:49497927-49497946 None:intergenic 60.0%
TTCCATCCAGTGTCCACCCC+TGG - chr4_1:49497928-49497947 None:intergenic 60.0%
GCCACCATAGAGCCACACCT+AGG + chr4_1:49498207-49498226 Msa0552810:intron 60.0%
! GCCTCCTAGGTGTGGCTCTA+TGG - chr4_1:49498214-49498233 None:intergenic 60.0%
AGAGCCACACCTAGGAGGCT+AGG + chr4_1:49498215-49498234 Msa0552810:intron 60.0%
TGGACCTAGCCTCCTAGGTG+TGG - chr4_1:49498222-49498241 None:intergenic 60.0%
!! GGCTGGAGGCATCCTTGGGA+GGG + chr4_1:49497407-49497426 Msa0552810:intron 65.0%
TCCCAGGGGTGGACACTGGA+TGG + chr4_1:49497923-49497942 Msa0552810:intron 65.0%
AGGGGTGGACCTAGCCTCCT+AGG - chr4_1:49498227-49498246 None:intergenic 65.0%
!! GGCTGGAGGCATCCTTGGGA+GGG + chr4_1:49497407-49497426 Msa0552810:intron 65.0%
TCCCAGGGGTGGACACTGGA+TGG + chr4_1:49497923-49497942 Msa0552810:intron 65.0%
AGGGGTGGACCTAGCCTCCT+AGG - chr4_1:49498227-49498246 None:intergenic 65.0%
!! GGGCTGGAGGCATCCTTGGG+AGG + chr4_1:49497406-49497425 Msa0552810:intron 70.0%
!! GGGCTGGAGGCATCCTTGGG+AGG + chr4_1:49497406-49497425 Msa0552810:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49496980 49499078 49496980 ID=Msa0552810;Name=Msa0552810
chr4_1 mRNA 49496980 49499078 49496980 ID=Msa0552810-mRNA-1;Parent=Msa0552810;Name=Msa0552810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|0.5|1|1|1|1|3|215|82
chr4_1 exon 49496980 49497159 49496980 ID=Msa0552810-mRNA-1:exon:13901;Parent=Msa0552810-mRNA-1
chr4_1 exon 49497265 49497310 49497265 ID=Msa0552810-mRNA-1:exon:13902;Parent=Msa0552810-mRNA-1
chr4_1 exon 49498774 49499078 49498774 ID=Msa0552810-mRNA-1:exon:13903;Parent=Msa0552810-mRNA-1
chr4_1 five_prime_UTR 49496980 49497046 49496980 ID=Msa0552810-mRNA-1:five_prime_utr;Parent=Msa0552810-mRNA-1
chr4_1 CDS 49497047 49497159 49497047 ID=Msa0552810-mRNA-1:cds;Parent=Msa0552810-mRNA-1
chr4_1 CDS 49497265 49497310 49497265 ID=Msa0552810-mRNA-1:cds;Parent=Msa0552810-mRNA-1
chr4_1 CDS 49498774 49498863 49498774 ID=Msa0552810-mRNA-1:cds;Parent=Msa0552810-mRNA-1
chr4_1 three_prime_UTR 49498864 49499078 49498864 ID=Msa0552810-mRNA-1:three_prime_utr;Parent=Msa0552810-mRNA-1
Gene Sequence

>Msa0552810

ATGGGTGGAGGACATGGACATGGACATGGCGGAACAACCTACAAAGGCGTAACAATTCATCAACCTAAGCGTTGGCACACTGTCACCGGCAAAGGCTTGTGTGCTGTCATGTGGTTTTGGGTCATGTACAGAGCAAAGCAAGATGCTCCTGTAGTATTGGCTTCAGCTGCAAAATCAGGAGCATCAGAACGTGAAGGATCTGTGTTCATGAATGTGTTAATCAAATGTTTACTTTGTTTCATTCAATAA

Protein sequence

>Msa0552810

MGGGHGHGHGGTTYKGVTIHQPKRWHTVTGKGLCAVMWFWVMYRAKQDAPVVLASAAKSGASEREGSVFMNVLIKCLLCFIQ*