AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199690 MtrunA17_Chr2g0294341 100.000 110 0 0 1 110 1 110 1.49e-74 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199690 AT3G06610.1 80.000 110 21 1 1 109 1 110 2.34e-56 170

Find 39 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTTCCTATTATATTAA+TGG 0.194107 2_1:+18944489 Msa0199690:three_prime_UTR
TATATAACAGTTGGACAAAA+AGG 0.270788 2_1:+18944192 Msa0199690:intron
GCCCAACAAGCAACAAAATA+TGG 0.274707 2_1:-18944568 None:intergenic
AATATAATAGGAACTTCTTT+AGG 0.285089 2_1:-18944484 None:intergenic
ACTCTGCTGTTGCATGTCTT+TGG 0.288649 2_1:-18941152 None:intergenic
TGCTTCACCATTAATATAAT+AGG 0.338544 2_1:-18944496 None:intergenic
CTGCTTCTGCTGAAGCTGAT+TGG 0.380996 2_1:+18941257 Msa0199690:CDS
TATTATATTAATGGTGAAGC+AGG 0.433387 2_1:+18944498 Msa0199690:three_prime_UTR
CTTTAGGACCAGAAAATTTG+AGG 0.435403 2_1:-18944468 None:intergenic
TGGAGACGAAGGAGTGGAGA+TGG 0.452107 2_1:+18941120 Msa0199690:CDS
AGTGCAAGTAACAAAATAGT+TGG 0.453367 2_1:-18944594 None:intergenic
TAAATCACATTCTGAAACAT+TGG 0.455290 2_1:-18944304 None:intergenic
ATTGGAATGCTATGCGTTTG+AGG 0.478356 2_1:+18941275 Msa0199690:CDS
GATGATATGATATAGTTCAT+TGG 0.482040 2_1:+18944388 Msa0199690:three_prime_UTR
AGGACCTTGCGTGAGCATAA+AGG 0.482732 2_1:+18944223 Msa0199690:CDS
AGCTTCAGCAGAAGCAGCAA+TGG 0.492964 2_1:-18941251 None:intergenic
GGAGGGTGGAGACGAAGGAG+TGG 0.517925 2_1:+18941114 Msa0199690:CDS
TTTAGGACCAGAAAATTTGA+GGG 0.523666 2_1:-18944467 None:intergenic
AGAAGCAGCAATGGAAGCCA+TGG 0.542542 2_1:-18941242 None:intergenic
CGTCATTTGCTTCACTAGTG+TGG 0.560043 2_1:+18944265 Msa0199690:exon
TGGAATGATAAAACCATGGA+AGG 0.560527 2_1:-18944548 None:intergenic
TCAAATGTGACAGCCTTCCA+TGG 0.560662 2_1:+18944535 Msa0199690:three_prime_UTR
AACTCGTGTTCAAGAAGCCA+TGG 0.561938 2_1:+18941225 Msa0199690:CDS
AGACGAAGGAGTGGAGATGG+TGG 0.620347 2_1:+18941123 Msa0199690:CDS
TTCAGAAACGCTAAACTACA+CGG 0.629229 2_1:-18941035 None:intergenic
GAACACGAGTTGAATCAAGC+TGG 0.629690 2_1:-18941213 None:intergenic
GGAAGGCTGTCACATTTGAG+TGG 0.629781 2_1:-18944531 None:intergenic
TATAATTGCAAACGAACTAG+AGG 0.633062 2_1:+18944095 Msa0199690:CDS
TCACATCATAGTATACATTG+AGG 0.637665 2_1:-18944365 None:intergenic
AAAATGGAGGGTGGAGACGA+AGG 0.644266 2_1:+18941109 Msa0199690:exon
ATTATATTAATGGTGAAGCA+GGG 0.647366 2_1:+18944499 Msa0199690:three_prime_UTR
AATATGGAATGATAAAACCA+TGG 0.648249 2_1:-18944552 None:intergenic
CTAGTGAAGCAAATGACGAA+TGG 0.649500 2_1:-18944260 None:intergenic
TAGTGTGGTAGAAACAAACA+AGG 0.650096 2_1:+18944280 Msa0199690:exon
ATCACCTTTATGCTCACGCA+AGG 0.659657 2_1:-18944227 None:intergenic
TAGGACCAGAAAATTTGAGG+GGG 0.670773 2_1:-18944465 None:intergenic
TTAGGACCAGAAAATTTGAG+GGG 0.674228 2_1:-18944466 None:intergenic
AGTGTGGTAGAAACAAACAA+GGG 0.777336 2_1:+18944281 Msa0199690:exon
CAAGCTGGCGATCTTCAACG+CGG 0.793472 2_1:-18941198 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGTTAATTTTGAATTT+TGG + chr2_1:18943350-18943369 Msa0199690:intron 10.0%
!!! AATTGTTAATTTTGAATTTT+GGG + chr2_1:18943351-18943370 Msa0199690:intron 10.0%
!!! AAAGTTTAATTTTTTCTGTA+TGG + chr2_1:18941478-18941497 Msa0199690:intron 15.0%
!!! AAGTTTAATTTTTTCTGTAT+GGG + chr2_1:18941479-18941498 Msa0199690:intron 15.0%
!! AATAAGCTTAAAACATATTA+TGG + chr2_1:18941922-18941941 Msa0199690:intron 15.0%
!!! AAATTGCTAATTTTTGAATT+TGG + chr2_1:18942674-18942693 Msa0199690:intron 15.0%
!!! AATTGCTAATTTTTGAATTT+GGG + chr2_1:18942675-18942694 Msa0199690:intron 15.0%
!!! AGTTCTTAAATTTTAATGTT+AGG + chr2_1:18943575-18943594 Msa0199690:intron 15.0%
!!! TTAAATTTTAATGTTAGGTT+TGG + chr2_1:18943580-18943599 Msa0199690:intron 15.0%
!! AAATATCAAAAAAAGAACAA+AGG - chr2_1:18943699-18943718 None:intergenic 15.0%
!!! TTTTAATGACTATAAACAAG+TGG + chr2_1:18941534-18941553 Msa0199690:intron 20.0%
!!! CATATAGATTTTAAGTTAGA+TGG + chr2_1:18941578-18941597 Msa0199690:intron 20.0%
!! TAATCAATGAATCTAAAAAG+TGG - chr2_1:18941730-18941749 None:intergenic 20.0%
!!! AACTTAATGATGGAAATTAT+AGG + chr2_1:18942082-18942101 Msa0199690:intron 20.0%
!! AAAAACTATAGATCAAACTA+TGG + chr2_1:18942542-18942561 Msa0199690:intron 20.0%
!! TCAAAATCTATTTGCAAAAA+AGG - chr2_1:18942651-18942670 None:intergenic 20.0%
!!! ATTGCTAATTTTTGAATTTG+GGG + chr2_1:18942676-18942695 Msa0199690:intron 20.0%
!! GAGTAATGAATAAGTTAATT+CGG + chr2_1:18942767-18942786 Msa0199690:intron 20.0%
!!! TATTCCTATTTTTTCTTTGT+AGG - chr2_1:18943019-18943038 None:intergenic 20.0%
!!! TCATATGTTCAACATTTTAA+TGG - chr2_1:18943475-18943494 None:intergenic 20.0%
!! TATAATACCAGAACATAAAA+AGG - chr2_1:18943822-18943841 None:intergenic 20.0%
!! ATTATATGTTGTATTACTAG+TGG + chr2_1:18943836-18943855 Msa0199690:intron 20.0%
!!! ATGTATTTTGATTGAATCAT+AGG + chr2_1:18944028-18944047 Msa0199690:intron 20.0%
!!! TGTATTTTGATTGAATCATA+GGG + chr2_1:18944029-18944048 Msa0199690:intron 20.0%
!!! GTAAATTTCTAGATAGATTT+CGG - chr2_1:18944142-18944161 None:intergenic 20.0%
!!! AGAAAAGTATGTTAATTGAT+TGG - chr2_1:18944172-18944191 None:intergenic 20.0%
!!! TACTTTTCTTATATAACAGT+TGG + chr2_1:18944183-18944202 Msa0199690:intron 20.0%
!! AATATAATAGGAACTTCTTT+AGG - chr2_1:18944487-18944506 None:intergenic 20.0%
!! AGAAGTTCCTATTATATTAA+TGG + chr2_1:18944489-18944508 Msa0199690:three_prime_UTR 20.0%
!!! ATTGATTCAGTTTTTCTTTG+TGG + chr2_1:18941313-18941332 Msa0199690:intron 25.0%
!! TTGATTCAGTTTTTCTTTGT+GGG + chr2_1:18941314-18941333 Msa0199690:intron 25.0%
!!! AGAATGAGGTTTTTAGTTAT+TGG + chr2_1:18941373-18941392 Msa0199690:intron 25.0%
!!! GAATGAGGTTTTTAGTTATT+GGG + chr2_1:18941374-18941393 Msa0199690:intron 25.0%
!!! TTTTAGTTATTGGGAATTAG+AGG + chr2_1:18941383-18941402 Msa0199690:intron 25.0%
! TTTAGTTATTGGGAATTAGA+GGG + chr2_1:18941384-18941403 Msa0199690:intron 25.0%
!!! TAGATTTTAAGTTAGATGGT+TGG + chr2_1:18941582-18941601 Msa0199690:intron 25.0%
!!! AGATTTTAAGTTAGATGGTT+GGG + chr2_1:18941583-18941602 Msa0199690:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr2_1:18941665-18941684 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+AGG - chr2_1:18941706-18941725 None:intergenic 25.0%
!! CATTGATTAACATCAATATC+TGG + chr2_1:18941741-18941760 Msa0199690:intron 25.0%
!! TCAATATCTGGTCTATATTT+TGG + chr2_1:18941753-18941772 Msa0199690:intron 25.0%
! TATTCAATGAACCTAAAATG+TGG + chr2_1:18941803-18941822 Msa0199690:intron 25.0%
!!! AACCTAAAATGTGGTTTTTT+AGG + chr2_1:18941812-18941831 Msa0199690:intron 25.0%
!!! TAAAATGTGGTTTTTTAGGT+GGG + chr2_1:18941816-18941835 Msa0199690:intron 25.0%
! TACTTAGGTTCTATTTGAAT+TGG - chr2_1:18942037-18942056 None:intergenic 25.0%
! ACCTAAGTACAATAAGTATA+TGG + chr2_1:18942048-18942067 Msa0199690:intron 25.0%
! TCCATATACTTATTGTACTT+AGG - chr2_1:18942052-18942071 None:intergenic 25.0%
! ATGCAATTCTAACTTAATGA+TGG + chr2_1:18942072-18942091 Msa0199690:intron 25.0%
!! CTATTTCTTACTACTTATGT+AGG - chr2_1:18942510-18942529 None:intergenic 25.0%
! ACATAAGTAGTAAGAAATAG+AGG + chr2_1:18942510-18942529 Msa0199690:intron 25.0%
! CATAAGTAGTAAGAAATAGA+GGG + chr2_1:18942511-18942530 Msa0199690:intron 25.0%
!! GTTTGATCTATAGTTTTTCT+TGG - chr2_1:18942540-18942559 None:intergenic 25.0%
! AATCTATTTGCAAAAAAGGT+GGG - chr2_1:18942647-18942666 None:intergenic 25.0%
! AAATCTATTTGCAAAAAAGG+TGG - chr2_1:18942648-18942667 None:intergenic 25.0%
!! TTGCTAATTTTTGAATTTGG+GGG + chr2_1:18942677-18942696 Msa0199690:intron 25.0%
! AAAGATGATGAAAGATCATT+AGG + chr2_1:18942717-18942736 Msa0199690:intron 25.0%
! GAATAAGTTAATTCGGTTAA+AGG + chr2_1:18942774-18942793 Msa0199690:intron 25.0%
! ACAATACTTGTAATATTGCA+TGG + chr2_1:18942925-18942944 Msa0199690:intron 25.0%
! TAAAGATGCGAATCTTATAT+TGG + chr2_1:18942986-18943005 Msa0199690:intron 25.0%
!! TCTAACATGTTTTCTACAAT+AGG - chr2_1:18943075-18943094 None:intergenic 25.0%
! TATTTACTTCGAAATCTCTA+TGG - chr2_1:18943222-18943241 None:intergenic 25.0%
! ATAGAGATTTCGAAGTAAAT+AGG + chr2_1:18943221-18943240 Msa0199690:intron 25.0%
!!! TAAATACTCAAGTTGAAAAC+TGG - chr2_1:18943647-18943666 None:intergenic 25.0%
! ATTTCTATACATAACTTCAG+GGG - chr2_1:18943937-18943956 None:intergenic 25.0%
! GATTTCTATACATAACTTCA+GGG - chr2_1:18943938-18943957 None:intergenic 25.0%
! TGATTTCTATACATAACTTC+AGG - chr2_1:18943939-18943958 None:intergenic 25.0%
! TATATAACAGTTGGACAAAA+AGG + chr2_1:18944192-18944211 Msa0199690:intron 25.0%
!!! TAAATCACATTCTGAAACAT+TGG - chr2_1:18944307-18944326 None:intergenic 25.0%
! GATGATATGATATAGTTCAT+TGG + chr2_1:18944388-18944407 Msa0199690:three_prime_UTR 25.0%
! TGCTTCACCATTAATATAAT+AGG - chr2_1:18944499-18944518 None:intergenic 25.0%
! TATTATATTAATGGTGAAGC+AGG + chr2_1:18944498-18944517 Msa0199690:three_prime_UTR 25.0%
! ATTATATTAATGGTGAAGCA+GGG + chr2_1:18944499-18944518 Msa0199690:three_prime_UTR 25.0%
! AATATGGAATGATAAAACCA+TGG - chr2_1:18944555-18944574 None:intergenic 25.0%
! TAGCGTTTCTGAATTTTTCT+AGG + chr2_1:18941045-18941064 Msa0199690:five_prime_UTR 30.0%
! AGCGTTTCTGAATTTTTCTA+GGG + chr2_1:18941046-18941065 Msa0199690:five_prime_UTR 30.0%
TTAGTTATTGGGAATTAGAG+GGG + chr2_1:18941385-18941404 Msa0199690:intron 30.0%
! CACCTAAAAAACCACATTTT+AGG - chr2_1:18941817-18941836 None:intergenic 30.0%
!!! CTAAAATGTGGTTTTTTAGG+TGG + chr2_1:18941815-18941834 Msa0199690:intron 30.0%
!! AGCTTATTTTCATAAGCTCT+TGG - chr2_1:18941910-18941929 None:intergenic 30.0%
! CTTTTCATAACTTTGGATGA+AGG - chr2_1:18942149-18942168 None:intergenic 30.0%
CTTCATCCAAAGTTATGAAA+AGG + chr2_1:18942147-18942166 Msa0199690:intron 30.0%
TAGAGGAAGATGTAAACAAT+AGG + chr2_1:18942170-18942189 Msa0199690:intron 30.0%
!! TCTAAGAAGAGTTGATGAAA+AGG + chr2_1:18942194-18942213 Msa0199690:intron 30.0%
AACTTTACTGCACAACTATA+AGG + chr2_1:18942277-18942296 Msa0199690:intron 30.0%
TAGAGATGAGAATCTTGTAA+TGG + chr2_1:18942368-18942387 Msa0199690:intron 30.0%
!! ATGAGAATCTTGTAATGGAT+TGG + chr2_1:18942373-18942392 Msa0199690:intron 30.0%
TGGTGTCTACAAAGAAAAAT+AGG + chr2_1:18942393-18942412 Msa0199690:intron 30.0%
! TGCTATGTTTTCTACAATGA+GGG - chr2_1:18942449-18942468 None:intergenic 30.0%
ATCAAACTATGGTGATTTAG+AGG + chr2_1:18942553-18942572 Msa0199690:intron 30.0%
TTATCTTTGAACTTGATGCA+TGG + chr2_1:18942584-18942603 Msa0199690:intron 30.0%
ATCTATTTGCAAAAAAGGTG+GGG - chr2_1:18942646-18942665 None:intergenic 30.0%
TAAGTTAATTCGGTTAAAGG+TGG + chr2_1:18942777-18942796 Msa0199690:intron 30.0%
!! AATTTTCCTTCAGGTTTGAA+TGG - chr2_1:18942893-18942912 None:intergenic 30.0%
TATTGCATGGAATTGAATGT+TGG + chr2_1:18942938-18942957 Msa0199690:intron 30.0%
ATGCGAATCTTATATTGGAT+TGG + chr2_1:18942991-18943010 Msa0199690:intron 30.0%
TTCAATGATTAGAGAGAGAT+AGG + chr2_1:18943043-18943062 Msa0199690:intron 30.0%
TCAATGATTAGAGAGAGATA+GGG + chr2_1:18943044-18943063 Msa0199690:intron 30.0%
ATAGAGGAAGTCAATATTGT+AGG + chr2_1:18943191-18943210 Msa0199690:intron 30.0%
CGAAGTAAATAGGTTATCTT+CGG + chr2_1:18943231-18943250 Msa0199690:intron 30.0%
! AAAACCCTTTTCCATTAGAT+GGG - chr2_1:18943307-18943326 None:intergenic 30.0%
!!! ATTTTGGGATTACTTACACA+AGG + chr2_1:18943366-18943385 Msa0199690:intron 30.0%
AAATGTTGAACATATGAAGC+AGG + chr2_1:18943478-18943497 Msa0199690:intron 30.0%
AATGTTGAACATATGAAGCA+GGG + chr2_1:18943479-18943498 Msa0199690:intron 30.0%
GTTGAAATTTACCAGTGTTT+GGG + chr2_1:18943501-18943520 Msa0199690:intron 30.0%
AATTTAAGAACTTTGTCTCG+AGG - chr2_1:18943567-18943586 None:intergenic 30.0%
! TCTGAAATTTCTAAAAGCAC+AGG + chr2_1:18943668-18943687 Msa0199690:intron 30.0%
GTTCATCATTACAATGCAAA+GGG - chr2_1:18943800-18943819 None:intergenic 30.0%
! TGATGAACCTTTTTATGTTC+TGG + chr2_1:18943812-18943831 Msa0199690:intron 30.0%
!! AAGTACTTGTTTAGTTCTGA+AGG + chr2_1:18943866-18943885 Msa0199690:intron 30.0%
TTTACAAATACAGCCAAAAC+AGG - chr2_1:18943978-18943997 None:intergenic 30.0%
TATAATTGCAAACGAACTAG+AGG + chr2_1:18944095-18944114 Msa0199690:CDS 30.0%
TCACATCATAGTATACATTG+AGG - chr2_1:18944368-18944387 None:intergenic 30.0%
! TTTAGGACCAGAAAATTTGA+GGG - chr2_1:18944470-18944489 None:intergenic 30.0%
!! TTCCATATTTTGTTGCTTGT+TGG + chr2_1:18944566-18944585 Msa0199690:three_prime_UTR 30.0%
!! TCCATATTTTGTTGCTTGTT+GGG + chr2_1:18944567-18944586 Msa0199690:three_prime_UTR 30.0%
AGTGCAAGTAACAAAATAGT+TGG - chr2_1:18944597-18944616 None:intergenic 30.0%
TTCAGAAACGCTAAACTACA+CGG - chr2_1:18941038-18941057 None:intergenic 35.0%
AAGAGAAGAGCGAACAAAAA+TGG + chr2_1:18941093-18941112 Msa0199690:exon 35.0%
! GTTCTTCTGTGTGAAGTTTT+TGG + chr2_1:18941350-18941369 Msa0199690:intron 35.0%
!! TGTGAAGTTTTTGGAGAATG+AGG + chr2_1:18941359-18941378 Msa0199690:intron 35.0%
TAGTTATTGGGAATTAGAGG+GGG + chr2_1:18941386-18941405 Msa0199690:intron 35.0%
AGAGATGTGAAGTTAAGTCT+TGG + chr2_1:18941627-18941646 Msa0199690:intron 35.0%
GGAAACACAATATTCCTGTT+TGG + chr2_1:18941648-18941667 Msa0199690:intron 35.0%
!! AGTGACAGGAATGGATTAAA+TGG - chr2_1:18941692-18941711 None:intergenic 35.0%
GCTTATAATAGTGACAGGAA+TGG - chr2_1:18941701-18941720 None:intergenic 35.0%
CATTGAATAACTGACGTATC+TGG - chr2_1:18941792-18941811 None:intergenic 35.0%
! ATGCTGCAATTCATCGTTTT+TGG + chr2_1:18942113-18942132 Msa0199690:intron 35.0%
!!! ATTCATCGTTTTTGGTACCT+TGG + chr2_1:18942121-18942140 Msa0199690:intron 35.0%
!!! TTCATCGTTTTTGGTACCTT+GGG + chr2_1:18942122-18942141 Msa0199690:intron 35.0%
! CCTCTACCTTTTCATAACTT+TGG - chr2_1:18942156-18942175 None:intergenic 35.0%
CCAAAGTTATGAAAAGGTAG+AGG + chr2_1:18942153-18942172 Msa0199690:intron 35.0%
!! AAGAAGAGTTGATGAAAAGG+AGG + chr2_1:18942197-18942216 Msa0199690:intron 35.0%
AAAGAAACACTCAAACCTTG+AGG + chr2_1:18942252-18942271 Msa0199690:intron 35.0%
CATGGAGTTGAATATTGGTA+TGG + chr2_1:18942312-18942331 Msa0199690:intron 35.0%
GAGTTGAATATTGGTATGGT+TGG + chr2_1:18942316-18942335 Msa0199690:intron 35.0%
ACAGCACTAAATTTCCTTGT+TGG - chr2_1:18942349-18942368 None:intergenic 35.0%
! CTGCTATGTTTTCTACAATG+AGG - chr2_1:18942450-18942469 None:intergenic 35.0%
CATACCAAACAACCTAAGAT+GGG - chr2_1:18942476-18942495 None:intergenic 35.0%
ACATACCAAACAACCTAAGA+TGG - chr2_1:18942477-18942496 None:intergenic 35.0%
TTTGAACTTGATGCATGGAA+GGG + chr2_1:18942589-18942608 Msa0199690:intron 35.0%
ATTTGGGGGTAAATTACACA+TGG + chr2_1:18942691-18942710 Msa0199690:intron 35.0%
! TGAAAGATCATTAGGCCTTT+TGG + chr2_1:18942725-18942744 Msa0199690:intron 35.0%
!!! ATTAGGCCTTTTGGTTTGAT+GGG + chr2_1:18942734-18942753 Msa0199690:intron 35.0%
ACAAGCACGATTAAAATGCT+GGG + chr2_1:18942801-18942820 Msa0199690:intron 35.0%
TCTAAGTAGAGTGGATCAAA+TGG + chr2_1:18942831-18942850 Msa0199690:intron 35.0%
! TGAGCAGTAAATTTTCCTTC+AGG - chr2_1:18942902-18942921 None:intergenic 35.0%
GGTGCCTACAAAGAAAAAAT+AGG + chr2_1:18943012-18943031 Msa0199690:intron 35.0%
ACATGTTAGAGTTTCGTCTT+AGG + chr2_1:18943085-18943104 Msa0199690:intron 35.0%
GAGAAAACCTGTATAAGCAA+TGG + chr2_1:18943125-18943144 Msa0199690:intron 35.0%
AAACCTGTATAAGCAATGGT+TGG + chr2_1:18943129-18943148 Msa0199690:intron 35.0%
AACCTGTATAAGCAATGGTT+GGG + chr2_1:18943130-18943149 Msa0199690:intron 35.0%
AGTCATACAGTAAGAGATAG+AGG + chr2_1:18943175-18943194 Msa0199690:intron 35.0%
AAATAGGTTATCTTCGGACA+TGG + chr2_1:18943237-18943256 Msa0199690:intron 35.0%
! CAAAACCCTTTTCCATTAGA+TGG - chr2_1:18943308-18943327 None:intergenic 35.0%
! CATCTAATGGAAAAGGGTTT+TGG + chr2_1:18943306-18943325 Msa0199690:intron 35.0%
GAAGTTCATGAAAGACCATT+AGG + chr2_1:18943392-18943411 Msa0199690:intron 35.0%
!!! ATTAGGCCTTTTGGCTTAAT+GGG + chr2_1:18943409-18943428 Msa0199690:intron 35.0%
!! GTAATGACTAGGTTGGTTAA+AGG + chr2_1:18943444-18943463 Msa0199690:intron 35.0%
GGTTGAAATTTACCAGTGTT+TGG + chr2_1:18943500-18943519 Msa0199690:intron 35.0%
AACAAGCTAGTGTAAGTACT+AGG + chr2_1:18943532-18943551 Msa0199690:intron 35.0%
TAGTGTAAGTACTAGGAACA+GGG + chr2_1:18943539-18943558 Msa0199690:intron 35.0%
! GAAAACTGGCACAGTTTTTA+GGG - chr2_1:18943633-18943652 None:intergenic 35.0%
! TGAAAACTGGCACAGTTTTT+AGG - chr2_1:18943634-18943653 None:intergenic 35.0%
! GAAATTTCTAAAAGCACAGG+AGG + chr2_1:18943671-18943690 Msa0199690:intron 35.0%
ATCTTTGTTGCGCAAATGAA+TGG - chr2_1:18943725-18943744 None:intergenic 35.0%
GGTTCATCATTACAATGCAA+AGG - chr2_1:18943801-18943820 None:intergenic 35.0%
ATAACAGTTGGACAAAAAGG+TGG + chr2_1:18944195-18944214 Msa0199690:intron 35.0%
TAGTGTGGTAGAAACAAACA+AGG + chr2_1:18944280-18944299 Msa0199690:exon 35.0%
AGTGTGGTAGAAACAAACAA+GGG + chr2_1:18944281-18944300 Msa0199690:exon 35.0%
TTAGGACCAGAAAATTTGAG+GGG - chr2_1:18944469-18944488 None:intergenic 35.0%
!! CTTTAGGACCAGAAAATTTG+AGG - chr2_1:18944471-18944490 None:intergenic 35.0%
TGGAATGATAAAACCATGGA+AGG - chr2_1:18944551-18944570 None:intergenic 35.0%
AGAAGAGCGAACAAAAATGG+AGG + chr2_1:18941096-18941115 Msa0199690:exon 40.0%
GAAGAGCGAACAAAAATGGA+GGG + chr2_1:18941097-18941116 Msa0199690:exon 40.0%
ATTGGAATGCTATGCGTTTG+AGG + chr2_1:18941275-18941294 Msa0199690:CDS 40.0%
AGTTATTGGGAATTAGAGGG+GGG + chr2_1:18941387-18941406 Msa0199690:intron 40.0%
! GTGCAGTAAAGTTTTCCTCA+AGG - chr2_1:18942270-18942289 None:intergenic 40.0%
TACTGCACAACTATAAGGCT+TGG + chr2_1:18942282-18942301 Msa0199690:intron 40.0%
TGCTGCATGGAGTTGAATAT+TGG + chr2_1:18942307-18942326 Msa0199690:intron 40.0%
! TGGTTGGTATACAACCAACA+AGG + chr2_1:18942332-18942351 Msa0199690:intron 40.0%
CTTTGAACTTGATGCATGGA+AGG + chr2_1:18942588-18942607 Msa0199690:intron 40.0%
TGATGCATGGAAGGGATTTA+TGG + chr2_1:18942597-18942616 Msa0199690:intron 40.0%
ATTTGCAAAAAAGGTGGGGT+CGG - chr2_1:18942642-18942661 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGTTTGA+TGG + chr2_1:18942733-18942752 Msa0199690:intron 40.0%
!!! TTAGGCCTTTTGGTTTGATG+GGG + chr2_1:18942735-18942754 Msa0199690:intron 40.0%
AATAGCCCCATCAAACCAAA+AGG - chr2_1:18942743-18942762 None:intergenic 40.0%
CACAAGCACGATTAAAATGC+TGG + chr2_1:18942800-18942819 Msa0199690:intron 40.0%
CAAGCACGATTAAAATGCTG+GGG + chr2_1:18942802-18942821 Msa0199690:intron 40.0%
ACGATTAAAATGCTGGGGAT+AGG + chr2_1:18942807-18942826 Msa0199690:intron 40.0%
AAGTAGAGTGGATCAAATGG+AGG + chr2_1:18942834-18942853 Msa0199690:intron 40.0%
! GAAGTACCATTCAAACCTGA+AGG + chr2_1:18942884-18942903 Msa0199690:intron 40.0%
GCATGGAATTGAATGTTGGA+TGG + chr2_1:18942942-18942961 Msa0199690:intron 40.0%
TGTTAGAGTTTCGTCTTAGG+TGG + chr2_1:18943088-18943107 Msa0199690:intron 40.0%
AGTTTCGTCTTAGGTGGTTT+GGG + chr2_1:18943094-18943113 Msa0199690:intron 40.0%
TTATCTTCGGACATGGTACA+TGG + chr2_1:18943244-18943263 Msa0199690:intron 40.0%
ATATAGCCGATCCCATCTAA+TGG + chr2_1:18943293-18943312 Msa0199690:intron 40.0%
! CCTTTTCCATTAGATGGGAT+CGG - chr2_1:18943302-18943321 None:intergenic 40.0%
CGATCCCATCTAATGGAAAA+GGG + chr2_1:18943300-18943319 Msa0199690:intron 40.0%
!!! GGGTTTTGGTTGATGCAAAT+AGG + chr2_1:18943320-18943339 Msa0199690:intron 40.0%
! TGGTTGATGCAAATAGGTTG+AGG + chr2_1:18943326-18943345 Msa0199690:intron 40.0%
! TGAAAGACCATTAGGCCTTT+TGG + chr2_1:18943400-18943419 Msa0199690:intron 40.0%
CATTAAGCCAAAAGGCCTAA+TGG - chr2_1:18943410-18943429 None:intergenic 40.0%
!!! CATTAGGCCTTTTGGCTTAA+TGG + chr2_1:18943408-18943427 Msa0199690:intron 40.0%
AATGGTCCCATTAAGCCAAA+AGG - chr2_1:18943418-18943437 None:intergenic 40.0%
CCTAGTCATTACCAAGTGAA+TGG - chr2_1:18943436-18943455 None:intergenic 40.0%
!! CCATTCACTTGGTAATGACT+AGG + chr2_1:18943433-18943452 Msa0199690:intron 40.0%
!! TCACTTGGTAATGACTAGGT+TGG + chr2_1:18943437-18943456 Msa0199690:intron 40.0%
CTAGTGTAAGTACTAGGAAC+AGG + chr2_1:18943538-18943557 Msa0199690:intron 40.0%
ACAAATACAGCCAAAACAGG+AGG - chr2_1:18943975-18943994 None:intergenic 40.0%
TTCCTTGTCTCTCTAAACTG+TGG + chr2_1:18944004-18944023 Msa0199690:intron 40.0%
TACCACAGTTTAGAGAGACA+AGG - chr2_1:18944009-18944028 None:intergenic 40.0%
CTAGTGAAGCAAATGACGAA+TGG - chr2_1:18944263-18944282 None:intergenic 40.0%
TAGGACCAGAAAATTTGAGG+GGG - chr2_1:18944468-18944487 None:intergenic 40.0%
GCCCAACAAGCAACAAAATA+TGG - chr2_1:18944571-18944590 None:intergenic 40.0%
ACTCTGCTGTTGCATGTCTT+TGG - chr2_1:18941155-18941174 None:intergenic 45.0%
! GAACACGAGTTGAATCAAGC+TGG - chr2_1:18941216-18941235 None:intergenic 45.0%
AACTCGTGTTCAAGAAGCCA+TGG + chr2_1:18941225-18941244 Msa0199690:CDS 45.0%
GTTATTGGGAATTAGAGGGG+GGG + chr2_1:18941388-18941407 Msa0199690:intron 45.0%
!!! AGGGGGGGTGTAGTTTTTTT+GGG + chr2_1:18941403-18941422 Msa0199690:intron 45.0%
!!! GGGTGTAGTTTTTTTGGGGA+GGG + chr2_1:18941408-18941427 Msa0199690:intron 45.0%
!!! GGTGTAGTTTTTTTGGGGAG+GGG + chr2_1:18941409-18941428 Msa0199690:intron 45.0%
!!! GTGTAGTTTTTTTGGGGAGG+GGG + chr2_1:18941410-18941429 Msa0199690:intron 45.0%
TCTTGGCTCATGAACACAGT+TGG - chr2_1:18941893-18941912 None:intergenic 45.0%
AACTTTGGATGAAGGACCCA+AGG - chr2_1:18942141-18942160 None:intergenic 45.0%
ATAAGGCTTGGAATGCTGCA+TGG + chr2_1:18942294-18942313 Msa0199690:intron 45.0%
ACATAGCAGAGTCCCATCTT+AGG + chr2_1:18942461-18942480 Msa0199690:intron 45.0%
! GAGTCCCATCTTAGGTTGTT+TGG + chr2_1:18942469-18942488 Msa0199690:intron 45.0%
GGGATAGGATCTAAGTAGAG+TGG + chr2_1:18942822-18942841 Msa0199690:intron 45.0%
GAGTTTCGTCTTAGGTGGTT+TGG + chr2_1:18943093-18943112 Msa0199690:intron 45.0%
CTCCCAACCATTGCTTATAC+AGG - chr2_1:18943135-18943154 None:intergenic 45.0%
!! GGAGTGTTGAGAAGATGGAA+AGG + chr2_1:18943151-18943170 Msa0199690:intron 45.0%
CCGATCCCATCTAATGGAAA+AGG + chr2_1:18943299-18943318 Msa0199690:intron 45.0%
GCTTAATGGGACCATTCACT+TGG + chr2_1:18943422-18943441 Msa0199690:intron 45.0%
GTTGTAACAGACCCAAACAC+TGG - chr2_1:18943515-18943534 None:intergenic 45.0%
!!! ACTGGCACAGTTTTTAGGGT+GGG - chr2_1:18943629-18943648 None:intergenic 45.0%
!! AACTGGCACAGTTTTTAGGG+TGG - chr2_1:18943630-18943649 None:intergenic 45.0%
! CTCCATTGTACCTCCTGTTT+TGG + chr2_1:18943962-18943981 Msa0199690:intron 45.0%
! AGCCAAAACAGGAGGTACAA+TGG - chr2_1:18943967-18943986 None:intergenic 45.0%
TGGACAAAAAGGTGGCTGAA+AGG + chr2_1:18944203-18944222 Msa0199690:CDS 45.0%
ATCACCTTTATGCTCACGCA+AGG - chr2_1:18944230-18944249 None:intergenic 45.0%
CGTCATTTGCTTCACTAGTG+TGG + chr2_1:18944265-18944284 Msa0199690:exon 45.0%
ACCAGAAAATTTGAGGGGGT+GGG - chr2_1:18944464-18944483 None:intergenic 45.0%
TCAAATGTGACAGCCTTCCA+TGG + chr2_1:18944535-18944554 Msa0199690:three_prime_UTR 45.0%
GAGCGAACAAAAATGGAGGG+TGG + chr2_1:18941100-18941119 Msa0199690:exon 50.0%
AAAATGGAGGGTGGAGACGA+AGG + chr2_1:18941109-18941128 Msa0199690:exon 50.0%
AGAAGCAGCAATGGAAGCCA+TGG - chr2_1:18941245-18941264 None:intergenic 50.0%
AGCTTCAGCAGAAGCAGCAA+TGG - chr2_1:18941254-18941273 None:intergenic 50.0%
CTGCTTCTGCTGAAGCTGAT+TGG + chr2_1:18941257-18941276 Msa0199690:CDS 50.0%
!!! GAGGGGGGGTGTAGTTTTTT+TGG + chr2_1:18941402-18941421 Msa0199690:intron 50.0%
!!! GGGGGGGTGTAGTTTTTTTG+GGG + chr2_1:18941404-18941423 Msa0199690:intron 50.0%
!!! GGGGTGTAGTTTTTTTGGGG+AGG + chr2_1:18941407-18941426 Msa0199690:intron 50.0%
!!! TTTTTTTGGGGAGGGGGTGT+TGG + chr2_1:18941416-18941435 Msa0199690:intron 50.0%
! TTAGGTGGTTTGGGCATGTG+CGG + chr2_1:18943103-18943122 Msa0199690:intron 50.0%
!! GGTTGGGAGTGTTGAGAAGA+TGG + chr2_1:18943146-18943165 Msa0199690:intron 50.0%
TTCGGACATGGTACATGGCA+GGG + chr2_1:18943249-18943268 Msa0199690:intron 50.0%
! TGGTACATGGCAGGGCATTA+TGG + chr2_1:18943257-18943276 Msa0199690:intron 50.0%
!!! CTGGCACAGTTTTTAGGGTG+GGG - chr2_1:18943628-18943647 None:intergenic 50.0%
AGGACCTTGCGTGAGCATAA+AGG + chr2_1:18944223-18944242 Msa0199690:CDS 50.0%
CAGAAAATTTGAGGGGGTGG+GGG - chr2_1:18944462-18944481 None:intergenic 50.0%
CCAGAAAATTTGAGGGGGTG+GGG - chr2_1:18944463-18944482 None:intergenic 50.0%
GACCAGAAAATTTGAGGGGG+TGG - chr2_1:18944465-18944484 None:intergenic 50.0%
GGAAGGCTGTCACATTTGAG+TGG - chr2_1:18944534-18944553 None:intergenic 50.0%
TGGAGACGAAGGAGTGGAGA+TGG + chr2_1:18941120-18941139 Msa0199690:CDS 55.0%
AGACGAAGGAGTGGAGATGG+TGG + chr2_1:18941123-18941142 Msa0199690:CDS 55.0%
CAAGCTGGCGATCTTCAACG+CGG - chr2_1:18941201-18941220 None:intergenic 55.0%
CTTCGGACATGGTACATGGC+AGG + chr2_1:18943248-18943267 Msa0199690:intron 55.0%
! CCCCACCCCCTCAAATTTTC+TGG + chr2_1:18944460-18944479 Msa0199690:three_prime_UTR 55.0%
GGAGGGTGGAGACGAAGGAG+TGG + chr2_1:18941114-18941133 Msa0199690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 18941011 18944625 18941011 ID=Msa0199690;Name=Msa0199690
chr2_1 mRNA 18941011 18944625 18941011 ID=Msa0199690-mRNA-1;Parent=Msa0199690;Name=Msa0199690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|1|1|3|343|110
chr2_1 exon 18941011 18941296 18941011 ID=Msa0199690-mRNA-1:exon:7893;Parent=Msa0199690-mRNA-1
chr2_1 exon 18944050 18944116 18944050 ID=Msa0199690-mRNA-1:exon:7894;Parent=Msa0199690-mRNA-1
chr2_1 exon 18944202 18944625 18944202 ID=Msa0199690-mRNA-1:exon:7895;Parent=Msa0199690-mRNA-1
chr2_1 five_prime_UTR 18941011 18941111 18941011 ID=Msa0199690-mRNA-1:five_prime_utr;Parent=Msa0199690-mRNA-1
chr2_1 CDS 18941112 18941296 18941112 ID=Msa0199690-mRNA-1:cds;Parent=Msa0199690-mRNA-1
chr2_1 CDS 18944050 18944116 18944050 ID=Msa0199690-mRNA-1:cds;Parent=Msa0199690-mRNA-1
chr2_1 CDS 18944202 18944282 18944202 ID=Msa0199690-mRNA-1:cds;Parent=Msa0199690-mRNA-1
chr2_1 three_prime_UTR 18944283 18944625 18944283 ID=Msa0199690-mRNA-1:three_prime_utr;Parent=Msa0199690-mRNA-1
Gene Sequence

>Msa0199690

ATGGAGGGTGGAGACGAAGGAGTGGAGATGGTGGTTGATTCCAAAGACATGCAACAGCAGAGTAAAGCTTTCGATAAACTCACTGACCGCGTTGAAGATCGCCAGCTTGATTCAACTCGTGTTCAAGAAGCCATGGCTTCCATTGCTGCTTCTGCTGAAGCTGATTGGAATGCTATGCGTTTGAGGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCAGCAGATGTTGATATAATTGCAAACGAACTAGAGTTGGACAAAAAGGTGGCTGAAAGGACCTTGCGTGAGCATAAAGGTGATGCAGTTGCTGCCATTCGTCATTTGCTTCACTAG

Protein sequence

>Msa0199690

MEGGDEGVEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMRLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH*