Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617540 | XP_013446579.1 | 99.360 | 469 | 3 | 0 | 1 | 469 | 1 | 469 | 0.0 | 964 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617540 | sp|Q9ZUN8|HTD1_ARATH | 70.312 | 448 | 129 | 3 | 23 | 467 | 20 | 466 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032780 | Msa0617540 | 0.823347 | 1.454375e-53 | -8.615850e-47 |
| Msa0032810 | Msa0617540 | 0.819550 | 1.095025e-52 | -8.615850e-47 |
| Msa0044990 | Msa0617540 | 0.817104 | 3.920132e-52 | -8.615850e-47 |
| Msa0045730 | Msa0617540 | 0.809618 | 1.731063e-50 | -8.615850e-47 |
| Msa0114570 | Msa0617540 | 0.814648 | 1.384119e-51 | -8.615850e-47 |
| Msa0116130 | Msa0617540 | 0.805589 | 1.241018e-49 | -8.615850e-47 |
| Msa0116670 | Msa0617540 | 0.804821 | 1.797334e-49 | -8.615850e-47 |
| Msa0617540 | Msa0622750 | 0.812893 | 3.371813e-51 | -8.615850e-47 |
| Msa0617540 | Msa0623200 | 0.813253 | 2.811004e-51 | -8.615850e-47 |
| Msa0617540 | Msa0656410 | 0.922281 | 1.205501e-88 | -8.615850e-47 |
| Msa0617540 | Msa0698780 | 0.812506 | 4.097099e-51 | -8.615850e-47 |
| Msa0617540 | Msa0705800 | 0.840971 | 6.304652e-58 | -8.615850e-47 |
| Msa0617540 | Msa0709280 | 0.835903 | 1.279858e-56 | -8.615850e-47 |
| Msa0617540 | Msa0712610 | 0.865712 | 4.841216e-65 | -8.615850e-47 |
| Msa0617540 | Msa0729200 | 0.811806 | 5.823964e-51 | -8.615850e-47 |
| Msa0617540 | Msa0752910 | 0.801438 | 9.004816e-49 | -8.615850e-47 |
| Msa0617540 | Msa0769590 | 0.810757 | 9.837055e-51 | -8.615850e-47 |
| Msa0617540 | Msa0781080 | 0.829769 | 4.275946e-55 | -8.615850e-47 |
| Msa0617540 | Msa0781310 | 0.829289 | 5.593461e-55 | -8.615850e-47 |
| Msa0617540 | Msa0806880 | 0.808697 | 2.726358e-50 | -8.615850e-47 |
| Msa0617540 | Msa0822580 | 0.822864 | 1.885839e-53 | -8.615850e-47 |
| Msa0617540 | Msa0827380 | 0.807536 | 4.818098e-50 | -8.615850e-47 |
| Msa0617540 | Msa0844220 | -0.814094 | 1.835145e-51 | -8.615850e-47 |
| Msa0617540 | Msa0876170 | 0.807525 | 4.844860e-50 | -8.615850e-47 |
| Msa0617540 | Msa0945480 | 0.814709 | 1.342102e-51 | -8.615850e-47 |
| Msa0617540 | Msa1037290 | 0.824330 | 8.559146e-54 | -8.615850e-47 |
| Msa0617540 | Msa1039470 | 0.826745 | 2.291448e-54 | -8.615850e-47 |
| Msa0617540 | Msa1082170 | 0.836145 | 1.111076e-56 | -8.615850e-47 |
| Msa0617540 | Msa1085420 | 0.842552 | 2.412618e-58 | -8.615850e-47 |
| Msa0617540 | Msa1126520 | 0.858199 | 9.705192e-63 | -8.615850e-47 |
| Msa0617540 | Msa1164150 | 0.807830 | 4.173891e-50 | -8.615850e-47 |
| Msa0617540 | Msa1195300 | 0.801653 | 8.134374e-49 | -8.615850e-47 |
| Msa0617540 | Msa1218170 | 0.801253 | 9.826200e-49 | -8.615850e-47 |
| Msa0617540 | Msa1277260 | 0.811026 | 8.600385e-51 | -8.615850e-47 |
| Msa0617540 | Msa1332250 | 0.835321 | 1.796232e-56 | -8.615850e-47 |
| Msa0617540 | Msa1356790 | 0.864077 | 1.576041e-64 | -8.615850e-47 |
| Msa0617540 | Msa1362790 | 0.840607 | 7.853825e-58 | -8.615850e-47 |
| Msa0617540 | Msa1365140 | 0.818799 | 1.622923e-52 | -8.615850e-47 |
| Msa0617540 | Msa1368920 | 0.823366 | 1.439667e-53 | -8.615850e-47 |
| Msa0617540 | Msa1369190 | 0.805250 | 1.461500e-49 | -8.615850e-47 |
| Msa0617540 | Msa1406080 | 0.811026 | 8.600385e-51 | -8.615850e-47 |
| Msa0617540 | Msa1413500 | 0.809874 | 1.525246e-50 | -8.615850e-47 |
| Msa0133540 | Msa0617540 | 0.824356 | 8.437460e-54 | -8.615850e-47 |
| Msa0172930 | Msa0617540 | 0.823515 | 1.328977e-53 | -8.615850e-47 |
| Msa0181490 | Msa0617540 | 0.819530 | 1.106679e-52 | -8.615850e-47 |
| Msa0210360 | Msa0617540 | 0.800183 | 1.623897e-48 | -8.615850e-47 |
| Msa0216890 | Msa0617540 | 0.834867 | 2.337964e-56 | -8.615850e-47 |
| Msa0229150 | Msa0617540 | 0.870282 | 1.641324e-66 | -8.615850e-47 |
| Msa0230490 | Msa0617540 | 0.809827 | 1.560867e-50 | -8.615850e-47 |
| Msa0376830 | Msa0617540 | 0.814773 | 1.298838e-51 | -8.615850e-47 |
| Msa0481850 | Msa0617540 | 0.800656 | 1.301236e-48 | -8.615850e-47 |
| Msa0295880 | Msa0617540 | 0.813656 | 2.292263e-51 | -8.615850e-47 |
| Msa0306690 | Msa0617540 | 0.818204 | 2.214853e-52 | -8.615850e-47 |
| Msa0348830 | Msa0617540 | 0.815616 | 8.440593e-52 | -8.615850e-47 |
| Msa0546030 | Msa0617540 | 0.826025 | 3.401857e-54 | -8.615850e-47 |
| Msa0550420 | Msa0617540 | 0.812915 | 3.333469e-51 | -8.615850e-47 |
| Msa0588630 | Msa0617540 | -0.842035 | 3.305830e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617540 | MtrunA17_Chr8g0377441 | 99.360 | 469 | 3 | 0 | 1 | 469 | 1 | 469 | 0.0 | 964 |
| Msa0617540 | MtrunA17_Chr5g0406931 | 79.095 | 464 | 77 | 7 | 1 | 460 | 1 | 448 | 0.0 | 677 |
| Msa0617540 | MtrunA17_Chr4g0052291 | 28.934 | 394 | 214 | 12 | 52 | 428 | 29 | 373 | 5.61e-34 | 132 |
| Msa0617540 | MtrunA17_Chr2g0299271 | 30.218 | 321 | 182 | 10 | 155 | 450 | 151 | 454 | 6.51e-32 | 127 |
| Msa0617540 | MtrunA17_Chr4g0036951 | 30.100 | 299 | 174 | 9 | 157 | 450 | 109 | 377 | 6.52e-29 | 117 |
| Msa0617540 | MtrunA17_Chr2g0330271 | 27.246 | 334 | 185 | 12 | 155 | 450 | 110 | 423 | 1.28e-25 | 109 |
| Msa0617540 | MtrunA17_Chr2g0283891 | 25.974 | 231 | 144 | 8 | 216 | 432 | 99 | 316 | 2.27e-16 | 80.1 |
| Msa0617540 | MtrunA17_Chr1g0176241 | 33.766 | 154 | 91 | 6 | 236 | 389 | 339 | 481 | 1.36e-12 | 69.7 |
| Msa0617540 | MtrunA17_Chr5g0447911 | 34.127 | 126 | 72 | 3 | 269 | 391 | 250 | 367 | 9.43e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617540 | AT2G19540.1 | 70.312 | 448 | 129 | 3 | 23 | 467 | 20 | 466 | 0.0 | 640 |
| Msa0617540 | AT5G58230.1 | 31.013 | 316 | 173 | 8 | 126 | 428 | 90 | 373 | 1.16e-35 | 137 |
| Msa0617540 | AT2G16780.1 | 29.114 | 316 | 191 | 8 | 146 | 450 | 92 | 385 | 4.92e-34 | 132 |
| Msa0617540 | AT4G35050.1 | 28.481 | 316 | 193 | 8 | 146 | 450 | 93 | 386 | 1.49e-31 | 125 |
| Msa0617540 | AT2G19520.1 | 28.440 | 327 | 183 | 10 | 155 | 450 | 157 | 463 | 1.04e-27 | 116 |
| Msa0617540 | AT4G29730.1 | 27.950 | 322 | 181 | 10 | 155 | 445 | 137 | 438 | 1.16e-26 | 112 |
| Msa0617540 | AT4G29730.3 | 27.541 | 305 | 171 | 9 | 155 | 429 | 137 | 421 | 5.00e-25 | 107 |
| Msa0617540 | AT4G29730.2 | 27.541 | 305 | 171 | 9 | 155 | 429 | 137 | 421 | 5.00e-25 | 107 |
| Msa0617540 | AT1G29260.1 | 28.108 | 185 | 114 | 6 | 216 | 394 | 98 | 269 | 1.30e-14 | 75.1 |
| Msa0617540 | AT4G34460.4 | 25.824 | 182 | 131 | 3 | 215 | 393 | 141 | 321 | 3.30e-12 | 68.2 |
| Msa0617540 | AT4G34460.1 | 25.824 | 182 | 131 | 3 | 215 | 393 | 146 | 326 | 3.64e-12 | 68.2 |
| Msa0617540 | AT4G34460.3 | 25.824 | 182 | 131 | 3 | 215 | 393 | 146 | 326 | 3.84e-12 | 67.8 |
| Msa0617540 | AT4G34460.2 | 25.824 | 182 | 131 | 3 | 215 | 393 | 84 | 264 | 5.30e-12 | 67.0 |
Find 136 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAGTATCCAATATTTC+TGG | 0.186014 | 4_2:-68087923 | Msa0617540:CDS |
| CAGGAGCGTTTACTTGTTCT+TGG | 0.192683 | 4_2:+68084475 | None:intergenic |
| CAGAATATGGGACCTTTCTT+TGG | 0.220480 | 4_2:-68084538 | Msa0617540:CDS |
| ATATTGGATGGCCTTGTCTT+AGG | 0.248468 | 4_2:-68088983 | Msa0617540:intron |
| AAACCTTCTTGGAATTCTAT+TGG | 0.254653 | 4_2:-68087950 | Msa0617540:CDS |
| CTGCCCAAGATGCACATATA+TGG | 0.270395 | 4_2:+68087616 | None:intergenic |
| GTACAAAAGCAAAATTTCTT+TGG | 0.285637 | 4_2:+68083837 | None:intergenic |
| TGGATAAAAGCATTGCAATA+TGG | 0.287928 | 4_2:-68085594 | Msa0617540:CDS |
| CACACAGTGTATTTCATTAC+AGG | 0.300493 | 4_2:-68088361 | Msa0617540:CDS |
| TGTGTGCCAATGCAGTTCTT+TGG | 0.305295 | 4_2:+68084072 | None:intergenic |
| CTTTGGCATAACTTAGATTC+AGG | 0.310531 | 4_2:+68083854 | None:intergenic |
| TGCAATATGGGATACTCGTT+TGG | 0.310651 | 4_2:-68085581 | Msa0617540:CDS |
| GTGTGCCAATGCAGTTCTTT+GGG | 0.311930 | 4_2:+68084073 | None:intergenic |
| AACCTTCTTGGAATTCTATT+GGG | 0.322573 | 4_2:-68087949 | Msa0617540:CDS |
| GGCGGCGGCGCCACAGGTTC+CGG | 0.327760 | 4_2:-68089096 | Msa0617540:CDS |
| CTGTCAGTATGTCCAGTAAA+AGG | 0.330541 | 4_2:+68085798 | None:intergenic |
| AGTTGGGGAGGCAGATCTTC+AGG | 0.338811 | 4_2:+68084456 | None:intergenic |
| GACTGGAGTCCTCTTGTTCC+AGG | 0.347996 | 4_2:-68086013 | Msa0617540:CDS |
| GCAATATGGGATACTCGTTT+GGG | 0.354043 | 4_2:-68085580 | Msa0617540:CDS |
| TGCCGGTGGTCCTACTTTGC+AGG | 0.355683 | 4_2:-68087798 | Msa0617540:intron |
| ACGTCTCTTCCCAGAAATAT+TGG | 0.357236 | 4_2:+68087913 | None:intergenic |
| TTCGGCGGCGGCGGCGCCAC+AGG | 0.362085 | 4_2:-68089102 | Msa0617540:CDS |
| CCAAGGAGTTGATGCAGTTC+AGG | 0.373931 | 4_2:-68086080 | Msa0617540:CDS |
| CCCAGGCTGAGAAACCTTCT+TGG | 0.379293 | 4_2:-68087961 | Msa0617540:intron |
| CATTGGCACACACAGATTCC+TGG | 0.384701 | 4_2:-68084061 | Msa0617540:CDS |
| CTCACGAAGGTTGTATTAAC+CGG | 0.388862 | 4_2:-68087662 | Msa0617540:CDS |
| TGAAACTGATGACTCTGAAA+TGG | 0.392830 | 4_2:-68087873 | Msa0617540:CDS |
| ATCAACTCCTTGGACACCTT+CGG | 0.400128 | 4_2:+68086090 | None:intergenic |
| CCTGGTGAATAAACAATAGT+TGG | 0.407860 | 4_2:+68084439 | None:intergenic |
| TCGTGATCTCAGACTGCTTA+AGG | 0.409527 | 4_2:-68085356 | Msa0617540:intron |
| GAGTCATCAGTTTCACGTTT+AGG | 0.409980 | 4_2:+68087881 | None:intergenic |
| GGATAAAAGCATTGCAATAT+GGG | 0.421297 | 4_2:-68085593 | Msa0617540:CDS |
| ATGGGACCTTTCTTTGGAAA+AGG | 0.423598 | 4_2:-68084532 | Msa0617540:CDS |
| TGCCCAAGATGCACATATAT+GGG | 0.425064 | 4_2:+68087617 | None:intergenic |
| CTGGTGAATAAACAATAGTT+GGG | 0.426771 | 4_2:+68084440 | None:intergenic |
| TGTGCATCTTGGGCAGAATC+TGG | 0.430129 | 4_2:-68087609 | Msa0617540:CDS |
| GGCTAGTTGTATGTTGGCGT+CGG | 0.431422 | 4_2:-68085404 | Msa0617540:CDS |
| TCCCCATATATGTGCATCTT+GGG | 0.431645 | 4_2:-68087619 | Msa0617540:CDS |
| AGGAGCGTTTACTTGTTCTT+GGG | 0.432127 | 4_2:+68084476 | None:intergenic |
| TTTGTGCCATGGAGCGTATC+CGG | 0.432906 | 4_2:+68087643 | None:intergenic |
| TGAATCATCTTCGGCGGCGG+CGG | 0.433527 | 4_2:-68089111 | Msa0617540:CDS |
| GCAGTACATACTATCATTCC+AGG | 0.440018 | 4_2:+68084043 | None:intergenic |
| TTAAAGTATCCAATATTTCT+GGG | 0.447355 | 4_2:-68087922 | Msa0617540:CDS |
| TCCACACGAAGCTTCTTCAT+TGG | 0.452856 | 4_2:-68084797 | Msa0617540:CDS |
| ATCCCCATATATGTGCATCT+TGG | 0.460743 | 4_2:-68087620 | Msa0617540:CDS |
| AACTAGGTTACGCAGATTGT+AGG | 0.460907 | 4_2:+68089481 | None:intergenic |
| CCTGAACTGCATCAACTCCT+TGG | 0.464940 | 4_2:+68086080 | None:intergenic |
| CCAACTATTGTTTATTCACC+AGG | 0.472482 | 4_2:-68084439 | Msa0617540:intron |
| TGGATGTGATTGGATGCTTA+TGG | 0.478480 | 4_2:+68084830 | None:intergenic |
| TTTGGAAAAGGACGAGGAAG+AGG | 0.483191 | 4_2:-68084520 | Msa0617540:CDS |
| AAAGTTAGCACAAGCAGATA+AGG | 0.486028 | 4_2:+68083777 | None:intergenic |
| GCTAGTTGTATGTTGGCGTC+GGG | 0.490510 | 4_2:-68085403 | Msa0617540:CDS |
| AAGGTGCTTTGAATATTTGA+AGG | 0.491981 | 4_2:+68083995 | None:intergenic |
| TTGGCGTCGGGTAGTGATGA+TGG | 0.493276 | 4_2:-68085391 | Msa0617540:CDS |
| TACAAGGCAGTATCTGCTAT+AGG | 0.495721 | 4_2:-68083921 | Msa0617540:three_prime_UTR |
| ATGAAGGCTATGCTATAGAC+TGG | 0.496426 | 4_2:-68086030 | Msa0617540:CDS |
| CCGGTAAAAGTGTGGCAACC+TGG | 0.501960 | 4_2:-68089077 | Msa0617540:CDS |
| ACCTGTGAGTGGCTTGTTGT+TGG | 0.504353 | 4_2:+68089441 | None:intergenic |
| TGAATGTATTGTCATGGAAC+AGG | 0.507712 | 4_2:-68085516 | Msa0617540:intron |
| AATCCTTTGCCACAGAATAT+GGG | 0.508159 | 4_2:-68084550 | Msa0617540:intron |
| CTCCACTCAATGGATGTGAT+TGG | 0.514101 | 4_2:+68084820 | None:intergenic |
| GTTCCAGGGAGGCTTGTATC+CGG | 0.514187 | 4_2:-68085998 | Msa0617540:intron |
| ATAGCAGATACTGCCTTGTA+AGG | 0.517707 | 4_2:+68083924 | None:intergenic |
| GCAGATAAGGAAATTAATAG+AGG | 0.518815 | 4_2:+68083790 | None:intergenic |
| GGCAGAATCTGGTCATGTGC+AGG | 0.520350 | 4_2:-68087598 | Msa0617540:intron |
| CCTTTCTTTGGAAAAGGACG+AGG | 0.522730 | 4_2:-68084526 | Msa0617540:CDS |
| TTCTGGGAAGAGACGTGAGC+TGG | 0.529788 | 4_2:-68087906 | Msa0617540:CDS |
| GAAACGGAGTGAATCATCTT+CGG | 0.530490 | 4_2:-68089120 | Msa0617540:CDS |
| GACGAAGAAGAAGGTGGTGC+CGG | 0.530693 | 4_2:-68087815 | Msa0617540:CDS |
| CGGCATAAAACATCGTCAAA+AGG | 0.531323 | 4_2:-68089267 | Msa0617540:CDS |
| GATAGTGAAGACGAAGAAGA+AGG | 0.533242 | 4_2:-68087824 | Msa0617540:CDS |
| ACTAGGTTACGCAGATTGTA+GGG | 0.533840 | 4_2:+68089482 | None:intergenic |
| GAGGGTGTTACCTGCAAAGT+AGG | 0.537218 | 4_2:+68087788 | None:intergenic |
| GCAACCTGGTGTGGATAAGT+TGG | 0.537432 | 4_2:-68089063 | Msa0617540:CDS |
| ACAGAAACCGAAGGTGTCCA+AGG | 0.538288 | 4_2:-68086097 | Msa0617540:CDS |
| CAATAATAGTATTTATCTGT+GGG | 0.539902 | 4_2:-68085859 | Msa0617540:CDS |
| TTACCGGATACAAGCCTCCC+TGG | 0.543277 | 4_2:+68085995 | None:intergenic |
| AAATTTAAGCACAAAGATGA+AGG | 0.546613 | 4_2:-68086046 | Msa0617540:CDS |
| TTCGTGTGGACTCCACTCAA+TGG | 0.553277 | 4_2:+68084810 | None:intergenic |
| GAGTGAATCATCTTCGGCGG+CGG | 0.557113 | 4_2:-68089114 | Msa0617540:CDS |
| GCAATAATAGTATTTATCTG+TGG | 0.558281 | 4_2:-68085860 | Msa0617540:CDS |
| ATAGTATGTACTGCAGCAGA+TGG | 0.561830 | 4_2:-68084034 | Msa0617540:CDS |
| TTCCATGTTGCAGCAGATGT+AGG | 0.568203 | 4_2:+68085834 | None:intergenic |
| TGGAGAGAATTGTAAGCAGA+AGG | 0.568749 | 4_2:+68089014 | None:intergenic |
| ACAAGCCTCCCTGGAACAAG+AGG | 0.572225 | 4_2:+68086004 | None:intergenic |
| ATCCCAATAGAATTCCAAGA+AGG | 0.572795 | 4_2:+68087947 | None:intergenic |
| TGTGCTTGAAAAGACGCAGC+TGG | 0.573745 | 4_2:+68085550 | None:intergenic |
| AAGACCCCAAAGAACTGCAT+TGG | 0.573867 | 4_2:-68084078 | Msa0617540:CDS |
| TAGGTTGGCTAGTTGTATGT+TGG | 0.574859 | 4_2:-68085410 | Msa0617540:CDS |
| GCCATCCAATATGAAAAGCA+TGG | 0.576629 | 4_2:+68088994 | None:intergenic |
| GGCATAACTTAGATTCAGGA+TGG | 0.577023 | 4_2:+68083858 | None:intergenic |
| TTTGAATATTTGAAGGCATG+AGG | 0.577378 | 4_2:+68084002 | None:intergenic |
| ACCAACAACAAGCCACTCAC+AGG | 0.580280 | 4_2:-68089442 | Msa0617540:intron |
| TCTTCCAACTTATCCACACC+AGG | 0.583170 | 4_2:+68089059 | None:intergenic |
| TGTGCCAATGCAGTTCTTTG+GGG | 0.585321 | 4_2:+68084074 | None:intergenic |
| AGCCTACATCTGCTGCAACA+TGG | 0.586634 | 4_2:-68085836 | Msa0617540:CDS |
| TTCTGTTCGAACTAAACCCA+TGG | 0.588801 | 4_2:+68088390 | None:intergenic |
| AAAAGTGTGGCAACCTGGTG+TGG | 0.591077 | 4_2:-68089072 | Msa0617540:CDS |
| GTATTTCATTACAGGGACAC+AGG | 0.601861 | 4_2:-68088353 | Msa0617540:intron |
| CTGATGTGAATGTATTGTCA+TGG | 0.604527 | 4_2:-68085522 | Msa0617540:CDS |
| TACCTGCAAAGTAGGACCAC+CGG | 0.605560 | 4_2:+68087796 | None:intergenic |
| TTACGTAAGTTGATTATCAG+CGG | 0.605575 | 4_2:+68084765 | None:intergenic |
| TGGCGTCGGGTAGTGATGAT+GGG | 0.605656 | 4_2:-68085390 | Msa0617540:CDS |
| TATTAACCGGATACGCTCCA+TGG | 0.608736 | 4_2:-68087649 | Msa0617540:CDS |
| ACACAGTGTATTTCATTACA+GGG | 0.609707 | 4_2:-68088360 | Msa0617540:CDS |
| GGAAAAGGACGAGGAAGAGG+AGG | 0.612345 | 4_2:-68084517 | Msa0617540:CDS |
| GAAGAAGAAGGTGGTGCCGG+TGG | 0.612395 | 4_2:-68087812 | Msa0617540:CDS |
| GACGAAGAAGAGAAAGAACT+AGG | 0.614313 | 4_2:+68089465 | None:intergenic |
| ACTGATGACTCTGAAATGGA+TGG | 0.615606 | 4_2:-68087869 | Msa0617540:CDS |
| CACAGGTTCCGGTAAAAGTG+TGG | 0.622299 | 4_2:-68089085 | Msa0617540:CDS |
| ACCTTTGACAAACCTGTGAG+TGG | 0.623381 | 4_2:+68089430 | None:intergenic |
| ACTGGAGTCCTCTTGTTCCA+GGG | 0.624385 | 4_2:-68086012 | Msa0617540:CDS |
| GCAGATACTGCCTTGTAAGG+TGG | 0.628414 | 4_2:+68083927 | None:intergenic |
| GTATTCAAAATGCGCTACCA+CGG | 0.630470 | 4_2:+68084852 | None:intergenic |
| TGAATAAACAATAGTTGGGG+AGG | 0.631441 | 4_2:+68084444 | None:intergenic |
| AAAGGCAAAGAGCAAGAACA+AGG | 0.634436 | 4_2:-68089249 | Msa0617540:intron |
| ATCCAATCACATCCATTGAG+TGG | 0.634447 | 4_2:-68084822 | Msa0617540:CDS |
| GGAGTCCTCTTGTTCCAGGG+AGG | 0.636093 | 4_2:-68086009 | Msa0617540:CDS |
| TCATGCAGCTTCTGATGGCA+AGG | 0.636729 | 4_2:+68083976 | None:intergenic |
| TGACTCTGAAATGGATGGTG+AGG | 0.638725 | 4_2:-68087864 | Msa0617540:CDS |
| GCCAATGAAGAAGCTTCGTG+TGG | 0.638913 | 4_2:+68084796 | None:intergenic |
| TGAATAGGAAGGAGATTCCG+TGG | 0.641695 | 4_2:-68084869 | Msa0617540:intron |
| GTGTATCATGCAGCTTCTGA+TGG | 0.643240 | 4_2:+68083971 | None:intergenic |
| TGGTGAGGATAGTGATAGCG+AGG | 0.651927 | 4_2:-68087849 | Msa0617540:CDS |
| GTAATGAAATACACTGTGTG+TGG | 0.652047 | 4_2:+68088364 | None:intergenic |
| GCCCAAGATGCACATATATG+GGG | 0.653392 | 4_2:+68087618 | None:intergenic |
| TTCACACCTACAGTTGCGGA+AGG | 0.659965 | 4_2:-68087688 | Msa0617540:intron |
| AACTAATTGAAGATGACTCG+CGG | 0.660356 | 4_2:-68089287 | Msa0617540:exon |
| TTTGTTCTTTACCTAAGACA+AGG | 0.662595 | 4_2:+68088972 | None:intergenic |
| TGGTGAATAAACAATAGTTG+GGG | 0.666731 | 4_2:+68084441 | None:intergenic |
| AGTGAAGACGAAGAAGAAGG+TGG | 0.675905 | 4_2:-68087821 | Msa0617540:CDS |
| ACGGAGTGAATCATCTTCGG+CGG | 0.677615 | 4_2:-68089117 | Msa0617540:CDS |
| CAATATGGGATACTCGTTTG+GGG | 0.693736 | 4_2:-68085579 | Msa0617540:CDS |
| TATGGGATACTCGTTTGGGG+AGG | 0.701784 | 4_2:-68085576 | Msa0617540:CDS |
| CTAGCAGAGACAGAAACCGA+AGG | 0.703665 | 4_2:-68086106 | Msa0617540:CDS |
| TTGCGGAAGGTAACTCACGA+AGG | 0.747550 | 4_2:-68087675 | Msa0617540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAATATATCTAATCA+AGG | + | chr4_2:68088988-68089007 | None:intergenic | 10.0% |
| !!! | TTTTGAAAAAATTGAAGAAA+CGG | - | chr4_2:68083988-68084007 | Msa0617540:CDS | 15.0% |
| !!! | TCATGATTTATTTTTTGTTT+GGG | - | chr4_2:68084680-68084699 | Msa0617540:intron | 15.0% |
| !! | ATTTCAAAGATTAACTTATA+AGG | + | chr4_2:68086410-68086429 | None:intergenic | 15.0% |
| !!! | ATAAGTTAATCTTTGAAATA+TGG | - | chr4_2:68086411-68086430 | Msa0617540:intron | 15.0% |
| !! | AATATTATCTATACTAATGT+TGG | + | chr4_2:68086510-68086529 | None:intergenic | 15.0% |
| !!! | CAACATATTGAAATTTTTTA+AGG | - | chr4_2:68086814-68086833 | Msa0617540:intron | 15.0% |
| !! | AATAACAAAAACAAAATAGT+CGG | + | chr4_2:68088207-68088226 | None:intergenic | 15.0% |
| !!! | AAGTTCATTATTTTTTGAAT+AGG | - | chr4_2:68088240-68088259 | Msa0617540:intron | 15.0% |
| !!! | GATAATATTTCTGATTCATT+TGG | - | chr4_2:68083790-68083809 | Msa0617540:three_prime_UTR | 20.0% |
| !!! | GTCATGATTTATTTTTTGTT+TGG | - | chr4_2:68084679-68084698 | Msa0617540:intron | 20.0% |
| !!! | CATGATTTATTTTTTGTTTG+GGG | - | chr4_2:68084681-68084700 | Msa0617540:intron | 20.0% |
| !!! | TAGAATTTTTTGTCCTTTAA+TGG | - | chr4_2:68084924-68084943 | Msa0617540:intron | 20.0% |
| !!! | TTTAAAGTATCCAATATTTC+TGG | - | chr4_2:68085201-68085220 | Msa0617540:intron | 20.0% |
| !!! | TTAAAGTATCCAATATTTCT+GGG | - | chr4_2:68085202-68085221 | Msa0617540:intron | 20.0% |
| !! | AGTAAAAATTCATATGAAGA+GGG | + | chr4_2:68085357-68085376 | None:intergenic | 20.0% |
| !! | AAGTAAAAATTCATATGAAG+AGG | + | chr4_2:68085358-68085377 | None:intergenic | 20.0% |
| !!! | GAGTTAATTTTTTTAATCGA+CGG | - | chr4_2:68085617-68085636 | Msa0617540:CDS | 20.0% |
| !! | TGTGAAACATATGTATAAAA+TGG | - | chr4_2:68086374-68086393 | Msa0617540:intron | 20.0% |
| !! | TATAGTACTAAACAAACTAT+GGG | + | chr4_2:68086437-68086456 | None:intergenic | 20.0% |
| !! | TTATAGTACTAAACAAACTA+TGG | + | chr4_2:68086438-68086457 | None:intergenic | 20.0% |
| !!! | TAGTATAGATAATATTTCTG+TGG | - | chr4_2:68086514-68086533 | Msa0617540:intron | 20.0% |
| !!! | TTAAGGTTCTTAAATTTTAG+CGG | - | chr4_2:68086831-68086850 | Msa0617540:intron | 20.0% |
| !! | TTGAACAAAAATATACAACT+CGG | + | chr4_2:68086941-68086960 | None:intergenic | 20.0% |
| !! | CAATAATAGTATTTATCTGT+GGG | - | chr4_2:68087265-68087284 | Msa0617540:intron | 20.0% |
| !!! | TTTGTATGGTTTTTCTATAT+GGG | + | chr4_2:68087818-68087837 | None:intergenic | 20.0% |
| !!! | TTTTGTATGGTTTTTCTATA+TGG | + | chr4_2:68087819-68087838 | None:intergenic | 20.0% |
| !!! | AGAAAGTTTACAATTTTGTA+TGG | + | chr4_2:68087832-68087851 | None:intergenic | 20.0% |
| !! | TAATGATGTAATATGCTATT+AGG | + | chr4_2:68087993-68088012 | None:intergenic | 20.0% |
| !!! | TCATTATTTTTTGAATAGGA+AGG | - | chr4_2:68088244-68088263 | Msa0617540:intron | 20.0% |
| !! | ATAAATCCCTGAAATTTATT+AGG | + | chr4_2:68088437-68088456 | None:intergenic | 20.0% |
| !! | AATCCAAAGTAAGAAAAATA+AGG | + | chr4_2:68088540-68088559 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTTCAAGTATTT+GGG | + | chr4_2:68089504-68089523 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTTTCAAGTATT+TGG | + | chr4_2:68089505-68089524 | None:intergenic | 20.0% |
| !! | AAATACTTGAAAGAAAAATG+AGG | - | chr4_2:68089504-68089523 | Msa0617540:five_prime_UTR | 20.0% |
| !!! | AATAAAACCCATTATTTTGC+TGG | - | chr4_2:68084207-68084226 | Msa0617540:intron | 25.0% |
| ! | ATAATTCAATGTAGTCACTT+GGG | - | chr4_2:68084373-68084392 | Msa0617540:intron | 25.0% |
| ! | AAGAATTATGACATTGTGAT+TGG | - | chr4_2:68084480-68084499 | Msa0617540:CDS | 25.0% |
| !! | TCTTGTGTGTTTTCTTTTAT+AGG | - | chr4_2:68084805-68084824 | Msa0617540:CDS | 25.0% |
| ! | AAAACTCAAAAGTCCATTAA+AGG | + | chr4_2:68084940-68084959 | None:intergenic | 25.0% |
| !! | TTAAACTATGAGCAACTTTT+TGG | + | chr4_2:68085670-68085689 | None:intergenic | 25.0% |
| ! | CATATTTCATACTATGTTAG+TGG | - | chr4_2:68085703-68085722 | Msa0617540:intron | 25.0% |
| !!! | TTGAACCAAGTTATTTCTAT+TGG | - | chr4_2:68085852-68085871 | Msa0617540:CDS | 25.0% |
| !!! | TTTTTCTTGTTTCAATGTTG+TGG | - | chr4_2:68085885-68085904 | Msa0617540:intron | 25.0% |
| ! | AATCATTCAACTGTTAATGT+GGG | + | chr4_2:68086109-68086128 | None:intergenic | 25.0% |
| ! | TCAAAATGACAAAATATGTG+TGG | + | chr4_2:68086222-68086241 | None:intergenic | 25.0% |
| ! | TAGAATGTATAAGATTGAAG+TGG | - | chr4_2:68086266-68086285 | Msa0617540:intron | 25.0% |
| ! | TAAATTTAGCTACATGATTG+TGG | - | chr4_2:68086295-68086314 | Msa0617540:intron | 25.0% |
| !!! | GGACTTTATTGTTTTTGTTA+TGG | - | chr4_2:68086320-68086339 | Msa0617540:intron | 25.0% |
| ! | TTATCTATACTAATGTTGGT+AGG | + | chr4_2:68086506-68086525 | None:intergenic | 25.0% |
| ! | CGTAATAAATTTGTAGATCT+GGG | - | chr4_2:68086972-68086991 | Msa0617540:intron | 25.0% |
| !! | TTGTGCTTAAATTTTTGTAG+TGG | + | chr4_2:68087072-68087091 | None:intergenic | 25.0% |
| ! | AAATTTAAGCACAAAGATGA+AGG | - | chr4_2:68087078-68087097 | Msa0617540:intron | 25.0% |
| ! | TCATTGTCAAAGTAGATATA+AGG | - | chr4_2:68087209-68087228 | Msa0617540:intron | 25.0% |
| ! | GCAATAATAGTATTTATCTG+TGG | - | chr4_2:68087264-68087283 | Msa0617540:intron | 25.0% |
| !! | ATTGAAAAAACTCCTTTTAC+TGG | - | chr4_2:68087314-68087333 | Msa0617540:intron | 25.0% |
| ! | AATGAAATACAACAGATATG+AGG | + | chr4_2:68087686-68087705 | None:intergenic | 25.0% |
| ! | TAACAGCAAAATTACTGTAT+AGG | - | chr4_2:68087859-68087878 | Msa0617540:CDS | 25.0% |
| ! | TAATATGCTATTAGGACATA+AGG | + | chr4_2:68087985-68088004 | None:intergenic | 25.0% |
| ! | TCAACTTACGTAAGTAAATA+CGG | - | chr4_2:68088369-68088388 | Msa0617540:CDS | 25.0% |
| ! | ACGAATTCCTAATAAATTTC+AGG | - | chr4_2:68088427-68088446 | Msa0617540:intron | 25.0% |
| ! | CGAATTCCTAATAAATTTCA+GGG | - | chr4_2:68088428-68088447 | Msa0617540:intron | 25.0% |
| ! | TGTTTCTCTCATATTATCTT+TGG | - | chr4_2:68088459-68088478 | Msa0617540:intron | 25.0% |
| ! | GTTTCTCTCATATTATCTTT+GGG | - | chr4_2:68088460-68088479 | Msa0617540:intron | 25.0% |
| !! | AGCTTTTGTATAATGAAAGA+AGG | + | chr4_2:68088927-68088946 | None:intergenic | 25.0% |
| !! | TTCAAGTTAAAGGAAATAAG+AGG | + | chr4_2:68089015-68089034 | None:intergenic | 25.0% |
| !!! | TATTTCCTTTAACTTGAAAC+AGG | - | chr4_2:68089017-68089036 | Msa0617540:CDS | 25.0% |
| !!! | ATTTCCTTTAACTTGAAACA+GGG | - | chr4_2:68089018-68089037 | Msa0617540:CDS | 25.0% |
| !!! | TAGGTATTGCTATTTTAGTT+TGG | - | chr4_2:68089222-68089241 | Msa0617540:intron | 25.0% |
| ! | GTACAAAAGCAAAATTTCTT+TGG | + | chr4_2:68089290-68089309 | None:intergenic | 25.0% |
| ! | TGTAGGGTTTTTACGTTTTA+GGG | + | chr4_2:68083629-68083648 | None:intergenic | 30.0% |
| ! | TTGTAGGGTTTTTACGTTTT+AGG | + | chr4_2:68083630-68083649 | None:intergenic | 30.0% |
| AATAAAGTGCGAGATCAAAA+GGG | + | chr4_2:68083927-68083946 | None:intergenic | 30.0% | |
| TTTGTTCTTTACCTAAGACA+AGG | + | chr4_2:68084155-68084174 | None:intergenic | 30.0% | |
| GATAACTCCAGCAAAATAAT+GGG | + | chr4_2:68084217-68084236 | None:intergenic | 30.0% | |
| TGATAACTCCAGCAAAATAA+TGG | + | chr4_2:68084218-68084237 | None:intergenic | 30.0% | |
| CATAATTCAATGTAGTCACT+TGG | - | chr4_2:68084372-68084391 | Msa0617540:intron | 30.0% | |
| TGTCATAATTCTTGTGAAAG+AGG | + | chr4_2:68084473-68084492 | None:intergenic | 30.0% | |
| ! | TGACATAGAATTGGTAACAT+TGG | + | chr4_2:68084506-68084525 | None:intergenic | 30.0% |
| ACACAGTGTATTTCATTACA+GGG | - | chr4_2:68084764-68084783 | Msa0617540:intron | 30.0% | |
| ACTGTTCATTACCAATCAAA+TGG | - | chr4_2:68084857-68084876 | Msa0617540:CDS | 30.0% | |
| CTGTTCATTACCAATCAAAT+GGG | - | chr4_2:68084858-68084877 | Msa0617540:CDS | 30.0% | |
| TGTTCATTACCAATCAAATG+GGG | - | chr4_2:68084859-68084878 | Msa0617540:CDS | 30.0% | |
| !! | GTAACGGAAAAGTTGATATT+GGG | - | chr4_2:68084881-68084900 | Msa0617540:intron | 30.0% |
| AAAGCTAGTAAAACATGACT+AGG | + | chr4_2:68085087-68085106 | None:intergenic | 30.0% | |
| AAACCTTCTTGGAATTCTAT+TGG | - | chr4_2:68085174-68085193 | Msa0617540:intron | 30.0% | |
| AACCTTCTTGGAATTCTATT+GGG | - | chr4_2:68085175-68085194 | Msa0617540:intron | 30.0% | |
| ! | AGTTGATCTTACTGACATTT+TGG | - | chr4_2:68085408-68085427 | Msa0617540:CDS | 30.0% |
| !!! | AGTTTTAAAAACCCTATGAC+TGG | - | chr4_2:68085551-68085570 | Msa0617540:CDS | 30.0% |
| GCTTTAACCAAACATTTACT+TGG | + | chr4_2:68085584-68085603 | None:intergenic | 30.0% | |
| GTAGTAAATGAGCCATTATT+TGG | - | chr4_2:68085727-68085746 | Msa0617540:intron | 30.0% | |
| CTGATCCAATAGAAATAACT+TGG | + | chr4_2:68085860-68085879 | None:intergenic | 30.0% | |
| !! | AGTTATTTCTATTGGATCAG+AGG | - | chr4_2:68085860-68085879 | Msa0617540:CDS | 30.0% |
| !! | GTTATTTCTATTGGATCAGA+GGG | - | chr4_2:68085861-68085880 | Msa0617540:CDS | 30.0% |
| !!! | TGAATGTTGTTATTTTGCCA+TGG | - | chr4_2:68086002-68086021 | Msa0617540:CDS | 30.0% |
| !!! | GAATGTTGTTATTTTGCCAT+GGG | - | chr4_2:68086003-68086022 | Msa0617540:CDS | 30.0% |
| CTTAGTAGAACATTGTCAAA+GGG | + | chr4_2:68086062-68086081 | None:intergenic | 30.0% | |
| TCTTAGTAGAACATTGTCAA+AGG | + | chr4_2:68086063-68086082 | None:intergenic | 30.0% | |
| ATCATTCAACTGTTAATGTG+GGG | + | chr4_2:68086108-68086127 | None:intergenic | 30.0% | |
| CAATCATTCAACTGTTAATG+TGG | + | chr4_2:68086110-68086129 | None:intergenic | 30.0% | |
| !! | AGTATCTCGTTTGATTTGAT+AGG | - | chr4_2:68086583-68086602 | Msa0617540:intron | 30.0% |
| AGGATAAATTATTCTGTTCC+AGG | - | chr4_2:68086603-68086622 | Msa0617540:intron | 30.0% | |
| ATGTTGCAATTGCAATACTT+AGG | + | chr4_2:68086668-68086687 | None:intergenic | 30.0% | |
| !! | AGTATCTCGTTTGATTTGAT+AGG | - | chr4_2:68086583-68086602 | Msa0617540:intron | 30.0% |
| AGGATAAATTATTCTGTTCC+AGG | - | chr4_2:68086603-68086622 | Msa0617540:intron | 30.0% | |
| ATGTTGCAATTGCAATACTT+AGG | + | chr4_2:68086668-68086687 | None:intergenic | 30.0% | |
| ACTTCTTTGATAGAAAGAGA+TGG | + | chr4_2:68086898-68086917 | None:intergenic | 30.0% | |
| GCGTAATAAATTTGTAGATC+TGG | - | chr4_2:68086971-68086990 | Msa0617540:intron | 30.0% | |
| AAAATAAGCCCAATGATTAC+CGG | + | chr4_2:68087148-68087167 | None:intergenic | 30.0% | |
| ATGTTGATCTTCATGTTTGT+AGG | - | chr4_2:68087236-68087255 | Msa0617540:intron | 30.0% | |
| TGTTGATCTTCATGTTTGTA+GGG | - | chr4_2:68087237-68087256 | Msa0617540:intron | 30.0% | |
| ! | TATTGCAATGCTTTTATCCA+CGG | + | chr4_2:68087530-68087549 | None:intergenic | 30.0% |
| !! | TGGATAAAAGCATTGCAATA+TGG | - | chr4_2:68087530-68087549 | Msa0617540:intron | 30.0% |
| !! | GGATAAAAGCATTGCAATAT+GGG | - | chr4_2:68087531-68087550 | Msa0617540:intron | 30.0% |
| TAGAATGAAAATTGAGTCGA+TGG | + | chr4_2:68087658-68087677 | None:intergenic | 30.0% | |
| TGTATTTCATTGTACTGAGT+AGG | - | chr4_2:68087695-68087714 | Msa0617540:intron | 30.0% | |
| GATGCTTTAATTGTCTTATC+TGG | - | chr4_2:68087936-68087955 | Msa0617540:CDS | 30.0% | |
| ! | AGGAACTTTTTATCGGAAAA+TGG | + | chr4_2:68087965-68087984 | None:intergenic | 30.0% |
| ! | GGACATAAGGAACTTTTTAT+CGG | + | chr4_2:68087972-68087991 | None:intergenic | 30.0% |
| TCCTTCAAAAATGCATTTCT+GGG | + | chr4_2:68088102-68088121 | None:intergenic | 30.0% | |
| TTCCTTCAAAAATGCATTTC+TGG | + | chr4_2:68088103-68088122 | None:intergenic | 30.0% | |
| AACAAAAACAAAATAGTCGG+CGG | + | chr4_2:68088204-68088223 | None:intergenic | 30.0% | |
| !! | TTACGTAAGTTGATTATCAG+CGG | + | chr4_2:68088362-68088381 | None:intergenic | 30.0% |
| GTAAGAAAAATAAGGCAGTT+TGG | + | chr4_2:68088532-68088551 | None:intergenic | 30.0% | |
| !!! | CTGCCTTATTTTTCTTACTT+TGG | - | chr4_2:68088534-68088553 | Msa0617540:intron | 30.0% |
| TGGTGAATAAACAATAGTTG+GGG | + | chr4_2:68088686-68088705 | None:intergenic | 30.0% | |
| CTGGTGAATAAACAATAGTT+GGG | + | chr4_2:68088687-68088706 | None:intergenic | 30.0% | |
| AACCTAGCTTATACTCAAAT+AGG | + | chr4_2:68088855-68088874 | None:intergenic | 30.0% | |
| ! | TTTGAATATTTGAAGGCATG+AGG | + | chr4_2:68089125-68089144 | None:intergenic | 30.0% |
| ! | AAGGTGCTTTGAATATTTGA+AGG | + | chr4_2:68089132-68089151 | None:intergenic | 30.0% |
| !!! | TTGCTATTTTAGTTTGGACA+AGG | - | chr4_2:68089228-68089247 | Msa0617540:intron | 30.0% |
| GCAGATAAGGAAATTAATAG+AGG | + | chr4_2:68089337-68089356 | None:intergenic | 30.0% | |
| ! | GTAGGGTTTTTACGTTTTAG+GGG | + | chr4_2:68083628-68083647 | None:intergenic | 35.0% |
| AACTAATTGAAGATGACTCG+CGG | - | chr4_2:68083837-68083856 | Msa0617540:three_prime_UTR | 35.0% | |
| GAATAAAGTGCGAGATCAAA+AGG | + | chr4_2:68083928-68083947 | None:intergenic | 35.0% | |
| ! | TCTCTCCATGCTTTTCATAT+TGG | - | chr4_2:68084125-68084144 | Msa0617540:intron | 35.0% |
| ! | TCCATGCTTTTCATATTGGA+TGG | - | chr4_2:68084129-68084148 | Msa0617540:intron | 35.0% |
| CTGGAGTTATCACTGTTAAA+TGG | - | chr4_2:68084226-68084245 | Msa0617540:intron | 35.0% | |
| TCATAGCTCTTGAATTGCAA+TGG | + | chr4_2:68084294-68084313 | None:intergenic | 35.0% | |
| ! | TGACATAGAATTGGTGACAT+TGG | - | chr4_2:68084407-68084426 | Msa0617540:intron | 35.0% |
| ! | ATTGGTGACATTGGTAACAT+TGG | - | chr4_2:68084416-68084435 | Msa0617540:intron | 35.0% |
| ! | GATATTTTACGTGACACCAT+GGG | - | chr4_2:68084718-68084737 | Msa0617540:intron | 35.0% |
| GTAATGAAATACACTGTGTG+TGG | + | chr4_2:68084763-68084782 | None:intergenic | 35.0% | |
| CACACAGTGTATTTCATTAC+AGG | - | chr4_2:68084763-68084782 | Msa0617540:intron | 35.0% | |
| TGTCTCATGAATCATCTTGA+AGG | - | chr4_2:68084829-68084848 | Msa0617540:CDS | 35.0% | |
| TTACCAATCAAATGGGGTAA+CGG | - | chr4_2:68084865-68084884 | Msa0617540:CDS | 35.0% | |
| !! | GGTAACGGAAAAGTTGATAT+TGG | - | chr4_2:68084880-68084899 | Msa0617540:intron | 35.0% |
| ACAAGGAGATTCTATGTGTT+GGG | + | chr4_2:68084983-68085002 | None:intergenic | 35.0% | |
| CATGCAACATATTATCAACG+AGG | + | chr4_2:68085140-68085159 | None:intergenic | 35.0% | |
| ATCCCAATAGAATTCCAAGA+AGG | + | chr4_2:68085180-68085199 | None:intergenic | 35.0% | |
| ! | TGAAACTGATGACTCTGAAA+TGG | - | chr4_2:68085251-68085270 | Msa0617540:intron | 35.0% |
| TCCTTAGCCAAGTAAATGTT+TGG | - | chr4_2:68085574-68085593 | Msa0617540:CDS | 35.0% | |
| ACCAAACATTTACTTGGCTA+AGG | + | chr4_2:68085578-68085597 | None:intergenic | 35.0% | |
| GATACGACAGAAAAGTTGAA+GGG | + | chr4_2:68085755-68085774 | None:intergenic | 35.0% | |
| TGATACGACAGAAAAGTTGA+AGG | + | chr4_2:68085756-68085775 | None:intergenic | 35.0% | |
| TCTTTCCTACATGCTATTAG+TGG | - | chr4_2:68085778-68085797 | Msa0617540:intron | 35.0% | |
| ATAGCACAAAGGATTCACAA+TGG | - | chr4_2:68085912-68085931 | Msa0617540:intron | 35.0% | |
| TAGCACAAAGGATTCACAAT+GGG | - | chr4_2:68085913-68085932 | Msa0617540:intron | 35.0% | |
| !!! | GCAAATTGCACTGATTGTTT+TGG | - | chr4_2:68085977-68085996 | Msa0617540:intron | 35.0% |
| CTTGGGTAATGACAAAATCT+GGG | + | chr4_2:68086036-68086055 | None:intergenic | 35.0% | |
| TCATTCAACTGTTAATGTGG+GGG | + | chr4_2:68086107-68086126 | None:intergenic | 35.0% | |
| AAAGTGAGTATTTGAGAGCT+TGG | - | chr4_2:68086143-68086162 | Msa0617540:intron | 35.0% | |
| ! | TCTAATGAGTTGAAGTTTGC+TGG | - | chr4_2:68086243-68086262 | Msa0617540:intron | 35.0% |
| TTTAGCTACATGATTGTGGT+TGG | - | chr4_2:68086299-68086318 | Msa0617540:intron | 35.0% | |
| TTTCACAAGTAATGTCTGCA+TGG | + | chr4_2:68086361-68086380 | None:intergenic | 35.0% | |
| !! | ATACTAGCTCTGAACTTTGT+CGG | + | chr4_2:68086568-68086587 | None:intergenic | 35.0% |
| ! | CAGGTATAATTTTTGCCCTT+GGG | - | chr4_2:68086622-68086641 | Msa0617540:intron | 35.0% |
| !! | TTAAATTTTAGCGGCAGCTA+AGG | - | chr4_2:68086840-68086859 | Msa0617540:intron | 35.0% |
| GTTGATCTTCATGTTTGTAG+GGG | - | chr4_2:68087238-68087257 | Msa0617540:intron | 35.0% | |
| ACACTGAAATGTTCCGAAAA+AGG | + | chr4_2:68087393-68087412 | None:intergenic | 35.0% | |
| CAAAAACATGAGGTTCTGTA+GGG | + | chr4_2:68087498-68087517 | None:intergenic | 35.0% | |
| CTGATGTGAATGTATTGTCA+TGG | - | chr4_2:68087602-68087621 | Msa0617540:CDS | 35.0% | |
| TGAATGTATTGTCATGGAAC+AGG | - | chr4_2:68087608-68087627 | Msa0617540:CDS | 35.0% | |
| !!! | AGGTATTCAGCATTGACTTT+TGG | - | chr4_2:68087628-68087647 | Msa0617540:CDS | 35.0% |
| TTTCATTGTACTGAGTAGGT+TGG | - | chr4_2:68087699-68087718 | Msa0617540:intron | 35.0% | |
| ! | GTTTTTCTATATGGGCAAAG+GGG | + | chr4_2:68087810-68087829 | None:intergenic | 35.0% |
| ! | GGTTTTTCTATATGGGCAAA+GGG | + | chr4_2:68087811-68087830 | None:intergenic | 35.0% |
| ! | TGGTTTTTCTATATGGGCAA+AGG | + | chr4_2:68087812-68087831 | None:intergenic | 35.0% |
| ! | ACCCAGAAATGCATTTTTGA+AGG | - | chr4_2:68088098-68088117 | Msa0617540:intron | 35.0% |
| TATTTGCAGAGTCCATGAAA+GGG | + | chr4_2:68088491-68088510 | None:intergenic | 35.0% | |
| TTATTTGCAGAGTCCATGAA+AGG | + | chr4_2:68088492-68088511 | None:intergenic | 35.0% | |
| TAATCCTTTGCCACAGAATA+TGG | - | chr4_2:68088573-68088592 | Msa0617540:intron | 35.0% | |
| AATCCTTTGCCACAGAATAT+GGG | - | chr4_2:68088574-68088593 | Msa0617540:intron | 35.0% | |
| TGAATAAACAATAGTTGGGG+AGG | + | chr4_2:68088683-68088702 | None:intergenic | 35.0% | |
| CCTGGTGAATAAACAATAGT+TGG | + | chr4_2:68088688-68088707 | None:intergenic | 35.0% | |
| CCAACTATTGTTTATTCACC+AGG | - | chr4_2:68088685-68088704 | Msa0617540:intron | 35.0% | |
| GCAAAGTGATTCAAATTACC+TGG | + | chr4_2:68088706-68088725 | None:intergenic | 35.0% | |
| TAGCTTATACTCAAATAGGC+TGG | + | chr4_2:68088851-68088870 | None:intergenic | 35.0% | |
| AGCCTATTTGAGTATAAGCT+AGG | - | chr4_2:68088850-68088869 | Msa0617540:intron | 35.0% | |
| CTAATCAAGGAGTTCTATCA+TGG | + | chr4_2:68088975-68088994 | None:intergenic | 35.0% | |
| !! | TTGTCCCTGTTTCAAGTTAA+AGG | + | chr4_2:68089025-68089044 | None:intergenic | 35.0% |
| CTTTGGCATAACTTAGATTC+AGG | + | chr4_2:68089273-68089292 | None:intergenic | 35.0% | |
| AAAGTTAGCACAAGCAGATA+AGG | + | chr4_2:68089350-68089369 | None:intergenic | 35.0% | |
| !!! | TTGAGTTGAGTGTTTTGAGA+TGG | - | chr4_2:68089378-68089397 | Msa0617540:intron | 35.0% |
| ACTAGGTTACGCAGATTGTA+GGG | + | chr4_2:68083645-68083664 | None:intergenic | 40.0% | |
| AACTAGGTTACGCAGATTGT+AGG | + | chr4_2:68083646-68083665 | None:intergenic | 40.0% | |
| GACGAAGAAGAGAAAGAACT+AGG | + | chr4_2:68083662-68083681 | None:intergenic | 40.0% | |
| CGGCATAAAACATCGTCAAA+AGG | - | chr4_2:68083857-68083876 | Msa0617540:three_prime_UTR | 40.0% | |
| AAAGGCAAAGAGCAAGAACA+AGG | - | chr4_2:68083875-68083894 | Msa0617540:three_prime_UTR | 40.0% | |
| GAAACGGAGTGAATCATCTT+CGG | - | chr4_2:68084004-68084023 | Msa0617540:CDS | 40.0% | |
| TGGAGAGAATTGTAAGCAGA+AGG | + | chr4_2:68084113-68084132 | None:intergenic | 40.0% | |
| GCCATCCAATATGAAAAGCA+TGG | + | chr4_2:68084133-68084152 | None:intergenic | 40.0% | |
| !! | ATATTGGATGGCCTTGTCTT+AGG | - | chr4_2:68084141-68084160 | Msa0617540:intron | 40.0% |
| GCACTTGAGTGACATAGAAT+TGG | + | chr4_2:68084515-68084534 | None:intergenic | 40.0% | |
| ! | ACACCTTCAATCAGAAGTGT+CGG | - | chr4_2:68084573-68084592 | Msa0617540:intron | 40.0% |
| ATACCGACACTTCTGATTGA+AGG | + | chr4_2:68084579-68084598 | None:intergenic | 40.0% | |
| ! | GTCGGTATTTAGAGTTCAAG+AGG | - | chr4_2:68084591-68084610 | Msa0617540:intron | 40.0% |
| AAGCAAACGCACAAAAGTTG+TGG | + | chr4_2:68084627-68084646 | None:intergenic | 40.0% | |
| ! | CGATATTTTACGTGACACCA+TGG | - | chr4_2:68084717-68084736 | Msa0617540:intron | 40.0% |
| TTCTGTTCGAACTAAACCCA+TGG | + | chr4_2:68084737-68084756 | None:intergenic | 40.0% | |
| GTATTTCATTACAGGGACAC+AGG | - | chr4_2:68084771-68084790 | Msa0617540:CDS | 40.0% | |
| TTTCCGTTACCCCATTTGAT+TGG | + | chr4_2:68084871-68084890 | None:intergenic | 40.0% | |
| CACAAGGAGATTCTATGTGT+TGG | + | chr4_2:68084984-68085003 | None:intergenic | 40.0% | |
| ACGTCTCTTCCCAGAAATAT+TGG | + | chr4_2:68085214-68085233 | None:intergenic | 40.0% | |
| GAGTCATCAGTTTCACGTTT+AGG | + | chr4_2:68085246-68085265 | None:intergenic | 40.0% | |
| !! | ACTGATGACTCTGAAATGGA+TGG | - | chr4_2:68085255-68085274 | Msa0617540:intron | 40.0% |
| GATAGTGAAGACGAAGAAGA+AGG | - | chr4_2:68085300-68085319 | Msa0617540:intron | 40.0% | |
| TCAACTTCAACACAGTCAAG+AGG | + | chr4_2:68085394-68085413 | None:intergenic | 40.0% | |
| CTCACGAAGGTTGTATTAAC+CGG | - | chr4_2:68085462-68085481 | Msa0617540:intron | 40.0% | |
| ! | TATATGGGGATTTTGTGCCA+TGG | + | chr4_2:68085495-68085514 | None:intergenic | 40.0% |
| ATCCCCATATATGTGCATCT+TGG | - | chr4_2:68085504-68085523 | Msa0617540:intron | 40.0% | |
| TCCCCATATATGTGCATCTT+GGG | - | chr4_2:68085505-68085524 | Msa0617540:intron | 40.0% | |
| TGCCCAAGATGCACATATAT+GGG | + | chr4_2:68085510-68085529 | None:intergenic | 40.0% | |
| !! | AGTTGAAGGGTGCCAAATAA+TGG | + | chr4_2:68085742-68085761 | None:intergenic | 40.0% |
| TCTAGCCACTAATAGCATGT+AGG | + | chr4_2:68085786-68085805 | None:intergenic | 40.0% | |
| AGGATTCACAATGGGAATAG+AGG | - | chr4_2:68085921-68085940 | Msa0617540:intron | 40.0% | |
| GGATTCACAATGGGAATAGA+GGG | - | chr4_2:68085922-68085941 | Msa0617540:intron | 40.0% | |
| GCTTGGGTAATGACAAAATC+TGG | + | chr4_2:68086037-68086056 | None:intergenic | 40.0% | |
| ACATTGTCAAAGGGATGCTT+GGG | + | chr4_2:68086053-68086072 | None:intergenic | 40.0% | |
| AACATTGTCAAAGGGATGCT+TGG | + | chr4_2:68086054-68086073 | None:intergenic | 40.0% | |
| AGAGCTTGGAATTGTAACTG+AGG | - | chr4_2:68086157-68086176 | Msa0617540:intron | 40.0% | |
| TTGTAACTGAGGACTCGATT+TGG | - | chr4_2:68086168-68086187 | Msa0617540:intron | 40.0% | |
| ! | TATTTCTGTGGTTCCACAAC+AGG | - | chr4_2:68086526-68086545 | Msa0617540:intron | 40.0% |
| CCAAGGGCAAAAATTATACC+TGG | + | chr4_2:68086624-68086643 | None:intergenic | 40.0% | |
| ! | CCAGGTATAATTTTTGCCCT+TGG | - | chr4_2:68086621-68086640 | Msa0617540:intron | 40.0% |
| GTAACCTCATTTGTACCCAA+GGG | + | chr4_2:68086640-68086659 | None:intergenic | 40.0% | |
| AGTAACCTCATTTGTACCCA+AGG | + | chr4_2:68086641-68086660 | None:intergenic | 40.0% | |
| ! | CAGGTATAATTTTCGCCCTT+GGG | - | chr4_2:68086754-68086773 | Msa0617540:intron | 40.0% |
| GTAACCTCATTTGTACCCAA+GGG | + | chr4_2:68086640-68086659 | None:intergenic | 40.0% | |
| AGTAACCTCATTTGTACCCA+AGG | + | chr4_2:68086641-68086660 | None:intergenic | 40.0% | |
| ATGAAGGCTATGCTATAGAC+TGG | - | chr4_2:68087094-68087113 | Msa0617540:intron | 40.0% | |
| GCTTGTATCCGGTAATCATT+GGG | - | chr4_2:68087137-68087156 | Msa0617540:intron | 40.0% | |
| CTGTCAGTATGTCCAGTAAA+AGG | + | chr4_2:68087329-68087348 | None:intergenic | 40.0% | |
| !! | GTTCCGAAAAAGGTATTGCT+TGG | + | chr4_2:68087383-68087402 | None:intergenic | 40.0% |
| GCAAAAACATGAGGTTCTGT+AGG | + | chr4_2:68087499-68087518 | None:intergenic | 40.0% | |
| GAGCAAGAAGCAAAAACATG+AGG | + | chr4_2:68087508-68087527 | None:intergenic | 40.0% | |
| TGCAATATGGGATACTCGTT+TGG | - | chr4_2:68087543-68087562 | Msa0617540:intron | 40.0% | |
| GCAATATGGGATACTCGTTT+GGG | - | chr4_2:68087544-68087563 | Msa0617540:intron | 40.0% | |
| CAATATGGGATACTCGTTTG+GGG | - | chr4_2:68087545-68087564 | Msa0617540:intron | 40.0% | |
| ! | TAGGTTGGCTAGTTGTATGT+TGG | - | chr4_2:68087714-68087733 | Msa0617540:intron | 40.0% |
| TCAGACTGCTTAAGGTATGT+TGG | - | chr4_2:68087776-68087795 | Msa0617540:intron | 40.0% | |
| AAGGAACTTCTAGATGCACT+TGG | - | chr4_2:68088117-68088136 | Msa0617540:intron | 40.0% | |
| GTATTCAAAATGCGCTACCA+CGG | + | chr4_2:68088275-68088294 | None:intergenic | 40.0% | |
| TGGATGTGATTGGATGCTTA+TGG | + | chr4_2:68088297-68088316 | None:intergenic | 40.0% | |
| ATCCAATCACATCCATTGAG+TGG | - | chr4_2:68088302-68088321 | Msa0617540:intron | 40.0% | |
| TACACCATCCACAGAATTGT+TGG | - | chr4_2:68088404-68088423 | Msa0617540:CDS | 40.0% | |
| GAATTCGTCCAACAATTCTG+TGG | + | chr4_2:68088415-68088434 | None:intergenic | 40.0% | |
| !! | CTTTGGGTTTTACCCTTTCA+TGG | - | chr4_2:68088476-68088495 | Msa0617540:intron | 40.0% |
| AAGAAAGGTCCCATATTCTG+TGG | + | chr4_2:68088586-68088605 | None:intergenic | 40.0% | |
| CAGAATATGGGACCTTTCTT+TGG | - | chr4_2:68088586-68088605 | Msa0617540:intron | 40.0% | |
| !! | AGGAGCGTTTACTTGTTCTT+GGG | + | chr4_2:68088651-68088670 | None:intergenic | 40.0% |
| TGCTCAACAATGAGTACGTT+TGG | - | chr4_2:68088723-68088742 | Msa0617540:intron | 40.0% | |
| GCTCAACAATGAGTACGTTT+GGG | - | chr4_2:68088724-68088743 | Msa0617540:intron | 40.0% | |
| GCAGTACATACTATCATTCC+AGG | + | chr4_2:68089084-68089103 | None:intergenic | 40.0% | |
| ATAGTATGTACTGCAGCAGA+TGG | - | chr4_2:68089090-68089109 | Msa0617540:CDS | 40.0% | |
| ! | CAGTTTTCAACCACCTTACA+AGG | - | chr4_2:68089187-68089206 | Msa0617540:intron | 40.0% |
| ATAGCAGATACTGCCTTGTA+AGG | + | chr4_2:68089203-68089222 | None:intergenic | 40.0% | |
| TACAAGGCAGTATCTGCTAT+AGG | - | chr4_2:68089203-68089222 | Msa0617540:intron | 40.0% | |
| GGCATAACTTAGATTCAGGA+TGG | + | chr4_2:68089269-68089288 | None:intergenic | 40.0% | |
| !!! | AGTTGAGTGTTTTGAGATGG+TGG | - | chr4_2:68089381-68089400 | Msa0617540:intron | 40.0% |
| !!! | GTTGAGTGTTTTGAGATGGT+GGG | - | chr4_2:68089382-68089401 | Msa0617540:intron | 40.0% |
| ACCTTTGACAAACCTGTGAG+TGG | + | chr4_2:68083697-68083716 | None:intergenic | 45.0% | |
| TCTTCCAACTTATCCACACC+AGG | + | chr4_2:68084068-68084087 | None:intergenic | 45.0% | |
| TAGTCACTTGGGTAGCACTT+GGG | - | chr4_2:68084384-68084403 | Msa0617540:intron | 45.0% | |
| GCACTTGGGTGACATAGAAT+TGG | - | chr4_2:68084398-68084417 | Msa0617540:intron | 45.0% | |
| TACACCGACACAAGTGACTA+CGG | + | chr4_2:68084541-68084560 | None:intergenic | 45.0% | |
| CACTAGCAGATAGCATCACA+AGG | + | chr4_2:68085000-68085019 | None:intergenic | 45.0% | |
| TAATATGTTGCATGTGCCCC+AGG | - | chr4_2:68085146-68085165 | Msa0617540:intron | 45.0% | |
| !! | TGACTCTGAAATGGATGGTG+AGG | - | chr4_2:68085260-68085279 | Msa0617540:intron | 45.0% |
| AGTGAAGACGAAGAAGAAGG+TGG | - | chr4_2:68085303-68085322 | Msa0617540:intron | 45.0% | |
| TCTGTTCACACCTACAGTTG+CGG | - | chr4_2:68085432-68085451 | Msa0617540:intron | 45.0% | |
| TATTAACCGGATACGCTCCA+TGG | - | chr4_2:68085475-68085494 | Msa0617540:intron | 45.0% | |
| GCCCAAGATGCACATATATG+GGG | + | chr4_2:68085509-68085528 | None:intergenic | 45.0% | |
| CTGCCCAAGATGCACATATA+TGG | + | chr4_2:68085511-68085530 | None:intergenic | 45.0% | |
| TTGGCTAAGGACCAGTCATA+GGG | + | chr4_2:68085565-68085584 | None:intergenic | 45.0% | |
| GTTGTGGCTGAATAGCACAA+AGG | - | chr4_2:68085901-68085920 | Msa0617540:intron | 45.0% | |
| ! | TGTTGGTAGGTTCACAAGTC+AGG | + | chr4_2:68086493-68086512 | None:intergenic | 45.0% |
| TATTATCTCCCGACCTGTTG+TGG | + | chr4_2:68086542-68086561 | None:intergenic | 45.0% | |
| TTTGCCCTTGGGTACAAATG+AGG | - | chr4_2:68086633-68086652 | Msa0617540:intron | 45.0% | |
| CCAAGGGCGAAAATTATACC+TGG | + | chr4_2:68086756-68086775 | None:intergenic | 45.0% | |
| ! | CCAGGTATAATTTTCGCCCT+TGG | - | chr4_2:68086753-68086772 | Msa0617540:intron | 45.0% |
| ATCAACTCCTTGGACACCTT+CGG | + | chr4_2:68087037-68087056 | None:intergenic | 45.0% | |
| GGCTTGTATCCGGTAATCAT+TGG | - | chr4_2:68087136-68087155 | Msa0617540:intron | 45.0% | |
| TTCCATGTTGCAGCAGATGT+AGG | + | chr4_2:68087293-68087312 | None:intergenic | 45.0% | |
| !! | CCGAAAAAGGTATTGCTTGG+CGG | + | chr4_2:68087380-68087399 | None:intergenic | 45.0% |
| ! | CCGCCAAGCAATACCTTTTT+CGG | - | chr4_2:68087377-68087396 | Msa0617540:intron | 45.0% |
| TGTTCAATGAACCCTTGCAG+TGG | - | chr4_2:68087470-68087489 | Msa0617540:intron | 45.0% | |
| !! | TGTTTTTGCTTCTTGCTCCG+TGG | - | chr4_2:68087510-68087529 | Msa0617540:intron | 45.0% |
| !! | TGCGTCTTTTCAAGCACACA+AGG | - | chr4_2:68087579-68087598 | Msa0617540:intron | 45.0% |
| TCGTGATCTCAGACTGCTTA+AGG | - | chr4_2:68087768-68087787 | Msa0617540:intron | 45.0% | |
| TGAATAGGAAGGAGATTCCG+TGG | - | chr4_2:68088255-68088274 | Msa0617540:intron | 45.0% | |
| CTCCACTCAATGGATGTGAT+TGG | + | chr4_2:68088307-68088326 | None:intergenic | 45.0% | |
| TCCACACGAAGCTTCTTCAT+TGG | - | chr4_2:68088327-68088346 | Msa0617540:intron | 45.0% | |
| TCGTCCAACAATTCTGTGGA+TGG | + | chr4_2:68088411-68088430 | None:intergenic | 45.0% | |
| !! | CAGGAGCGTTTACTTGTTCT+TGG | + | chr4_2:68088652-68088671 | None:intergenic | 45.0% |
| AAGACCCCAAAGAACTGCAT+TGG | - | chr4_2:68089046-68089065 | Msa0617540:CDS | 45.0% | |
| TGTGCCAATGCAGTTCTTTG+GGG | + | chr4_2:68089053-68089072 | None:intergenic | 45.0% | |
| GTGTGCCAATGCAGTTCTTT+GGG | + | chr4_2:68089054-68089073 | None:intergenic | 45.0% | |
| TGTGTGCCAATGCAGTTCTT+TGG | + | chr4_2:68089055-68089074 | None:intergenic | 45.0% | |
| GTGTATCATGCAGCTTCTGA+TGG | + | chr4_2:68089156-68089175 | None:intergenic | 45.0% | |
| ACCAACAACAAGCCACTCAC+AGG | - | chr4_2:68083682-68083701 | Msa0617540:three_prime_UTR | 50.0% | |
| !! | ACCTGTGAGTGGCTTGTTGT+TGG | + | chr4_2:68083686-68083705 | None:intergenic | 50.0% |
| GCCACTCACAGGTTTGTCAA+AGG | - | chr4_2:68083693-68083712 | Msa0617540:three_prime_UTR | 50.0% | |
| ACGGAGTGAATCATCTTCGG+CGG | - | chr4_2:68084007-68084026 | Msa0617540:CDS | 50.0% | |
| ! | CACACTTTTACCGGAACCTG+TGG | + | chr4_2:68084041-68084060 | None:intergenic | 50.0% |
| CACAGGTTCCGGTAAAAGTG+TGG | - | chr4_2:68084039-68084058 | Msa0617540:CDS | 50.0% | |
| ! | CCAGGTTGCCACACTTTTAC+CGG | + | chr4_2:68084050-68084069 | None:intergenic | 50.0% |
| ! | AAAAGTGTGGCAACCTGGTG+TGG | - | chr4_2:68084052-68084071 | Msa0617540:CDS | 50.0% |
| GCAACCTGGTGTGGATAAGT+TGG | - | chr4_2:68084061-68084080 | Msa0617540:CDS | 50.0% | |
| GTAGTCACTTGGGTAGCACT+TGG | - | chr4_2:68084383-68084402 | Msa0617540:intron | 50.0% | |
| GCCGATCACAATGTCACAAG+CGG | - | chr4_2:68084438-68084457 | Msa0617540:intron | 50.0% | |
| GCCGCTTGTGACATTGTGAT+CGG | + | chr4_2:68084442-68084461 | None:intergenic | 50.0% | |
| CTACCCGTAGTCACTTGTGT+CGG | - | chr4_2:68084534-68084553 | Msa0617540:CDS | 50.0% | |
| ACACCGACACAAGTGACTAC+GGG | + | chr4_2:68084540-68084559 | None:intergenic | 50.0% | |
| ! | CTTGTGTCGGTGTAGTACAC+TGG | - | chr4_2:68084547-68084566 | Msa0617540:intron | 50.0% |
| CAAGAAGGTTTCTCAGCCTG+GGG | + | chr4_2:68085165-68085184 | None:intergenic | 50.0% | |
| CCAAGAAGGTTTCTCAGCCT+GGG | + | chr4_2:68085166-68085185 | None:intergenic | 50.0% | |
| TCCAAGAAGGTTTCTCAGCC+TGG | + | chr4_2:68085167-68085186 | None:intergenic | 50.0% | |
| ! | TGGTGAGGATAGTGATAGCG+AGG | - | chr4_2:68085275-68085294 | Msa0617540:intron | 50.0% |
| TACCTGCAAAGTAGGACCAC+CGG | + | chr4_2:68085331-68085350 | None:intergenic | 50.0% | |
| !! | GAGGGTGTTACCTGCAAAGT+AGG | + | chr4_2:68085339-68085358 | None:intergenic | 50.0% |
| TTCACACCTACAGTTGCGGA+AGG | - | chr4_2:68085436-68085455 | Msa0617540:intron | 50.0% | |
| GAGTTACCTTCCGCAACTGT+AGG | + | chr4_2:68085445-68085464 | None:intergenic | 50.0% | |
| TTGCGGAAGGTAACTCACGA+AGG | - | chr4_2:68085449-68085468 | Msa0617540:intron | 50.0% | |
| TTTGTGCCATGGAGCGTATC+CGG | + | chr4_2:68085484-68085503 | None:intergenic | 50.0% | |
| TGTGCATCTTGGGCAGAATC+TGG | - | chr4_2:68085515-68085534 | Msa0617540:intron | 50.0% | |
| CTTGGCTAAGGACCAGTCAT+AGG | + | chr4_2:68085566-68085585 | None:intergenic | 50.0% | |
| ! | AAATCTGGGACATCAGCCCA+TGG | + | chr4_2:68086022-68086041 | None:intergenic | 50.0% |
| AGGTTCACAAGTCAGGTCGT+GGG | + | chr4_2:68086486-68086505 | None:intergenic | 50.0% | |
| TAGGTTCACAAGTCAGGTCG+TGG | + | chr4_2:68086487-68086506 | None:intergenic | 50.0% | |
| TCTGTGGTTCCACAACAGGT+CGG | - | chr4_2:68086530-68086549 | Msa0617540:intron | 50.0% | |
| !! | CTAGCTCTGAACTTTGTCGG+AGG | + | chr4_2:68086565-68086584 | None:intergenic | 50.0% |
| TTCGCCCTTGGGTACAAATG+AGG | - | chr4_2:68086765-68086784 | Msa0617540:intron | 50.0% | |
| AGCGGCAGCTAAGGTTGTTA+AGG | - | chr4_2:68086849-68086868 | Msa0617540:intron | 50.0% | |
| GCGGCAGCTAAGGTTGTTAA+GGG | - | chr4_2:68086850-68086869 | Msa0617540:intron | 50.0% | |
| CTAGCAGAGACAGAAACCGA+AGG | - | chr4_2:68087018-68087037 | Msa0617540:intron | 50.0% | |
| !! | ACAGAAACCGAAGGTGTCCA+AGG | - | chr4_2:68087027-68087046 | Msa0617540:intron | 50.0% |
| CCTGAACTGCATCAACTCCT+TGG | + | chr4_2:68087047-68087066 | None:intergenic | 50.0% | |
| !! | CCAAGGAGTTGATGCAGTTC+AGG | - | chr4_2:68087044-68087063 | Msa0617540:intron | 50.0% |
| ACTGGAGTCCTCTTGTTCCA+GGG | - | chr4_2:68087112-68087131 | Msa0617540:intron | 50.0% | |
| AGCCTACATCTGCTGCAACA+TGG | - | chr4_2:68087288-68087307 | Msa0617540:intron | 50.0% | |
| TATGGGATACTCGTTTGGGG+AGG | - | chr4_2:68087548-68087567 | Msa0617540:intron | 50.0% | |
| TGTGCTTGAAAAGACGCAGC+TGG | + | chr4_2:68087577-68087596 | None:intergenic | 50.0% | |
| ! | GGCTAGTTGTATGTTGGCGT+CGG | - | chr4_2:68087720-68087739 | Msa0617540:intron | 50.0% |
| GCTAGTTGTATGTTGGCGTC+GGG | - | chr4_2:68087721-68087740 | Msa0617540:intron | 50.0% | |
| TTCGTGTGGACTCCACTCAA+TGG | + | chr4_2:68088317-68088336 | None:intergenic | 50.0% | |
| GCCAATGAAGAAGCTTCGTG+TGG | + | chr4_2:68088331-68088350 | None:intergenic | 50.0% | |
| GGTCCCATATTCTGTGGCAA+AGG | + | chr4_2:68088580-68088599 | None:intergenic | 50.0% | |
| CATTGGCACACACAGATTCC+TGG | - | chr4_2:68089063-68089082 | Msa0617540:CDS | 50.0% | |
| TCATGCAGCTTCTGATGGCA+AGG | + | chr4_2:68089151-68089170 | None:intergenic | 50.0% | |
| GCAGATACTGCCTTGTAAGG+TGG | + | chr4_2:68089200-68089219 | None:intergenic | 50.0% | |
| GAGTGAATCATCTTCGGCGG+CGG | - | chr4_2:68084010-68084029 | Msa0617540:CDS | 55.0% | |
| ! | CCGGTAAAAGTGTGGCAACC+TGG | - | chr4_2:68084047-68084066 | Msa0617540:CDS | 55.0% |
| CCCAGGCTGAGAAACCTTCT+TGG | - | chr4_2:68085163-68085182 | Msa0617540:intron | 55.0% | |
| ! | TTCTGGGAAGAGACGTGAGC+TGG | - | chr4_2:68085218-68085237 | Msa0617540:intron | 55.0% |
| GACGAAGAAGAAGGTGGTGC+CGG | - | chr4_2:68085309-68085328 | Msa0617540:intron | 55.0% | |
| GGCAGAATCTGGTCATGTGC+AGG | - | chr4_2:68085526-68085545 | Msa0617540:CDS | 55.0% | |
| CTGTGGTTCCACAACAGGTC+GGG | - | chr4_2:68086531-68086550 | Msa0617540:intron | 55.0% | |
| GACTGGAGTCCTCTTGTTCC+AGG | - | chr4_2:68087111-68087130 | Msa0617540:intron | 55.0% | |
| ACAAGCCTCCCTGGAACAAG+AGG | + | chr4_2:68087123-68087142 | None:intergenic | 55.0% | |
| GTTCCAGGGAGGCTTGTATC+CGG | - | chr4_2:68087126-68087145 | Msa0617540:intron | 55.0% | |
| TTACCGGATACAAGCCTCCC+TGG | + | chr4_2:68087132-68087151 | None:intergenic | 55.0% | |
| TCTGTAGGGCTCCACTGCAA+GGG | + | chr4_2:68087484-68087503 | None:intergenic | 55.0% | |
| TTCTGTAGGGCTCCACTGCA+AGG | + | chr4_2:68087485-68087504 | None:intergenic | 55.0% | |
| ! | TTGGCGTCGGGTAGTGATGA+TGG | - | chr4_2:68087733-68087752 | Msa0617540:intron | 55.0% |
| ! | TGGCGTCGGGTAGTGATGAT+GGG | - | chr4_2:68087734-68087753 | Msa0617540:intron | 55.0% |
| AGTTGGGGAGGCAGATCTTC+AGG | + | chr4_2:68088671-68088690 | None:intergenic | 55.0% | |
| TGAATCATCTTCGGCGGCGG+CGG | - | chr4_2:68084013-68084032 | Msa0617540:CDS | 60.0% | |
| ! | GAAGAAGAAGGTGGTGCCGG+TGG | - | chr4_2:68085312-68085331 | Msa0617540:intron | 60.0% |
| TGCCGGTGGTCCTACTTTGC+AGG | - | chr4_2:68085326-68085345 | Msa0617540:intron | 60.0% | |
| GGAGTCCTCTTGTTCCAGGG+AGG | - | chr4_2:68087115-68087134 | Msa0617540:intron | 60.0% | |
| ! | GGCGGCGGCGCCACAGGTTC+CGG | - | chr4_2:68084028-68084047 | Msa0617540:CDS | 80.0% |
| ! | TTCGGCGGCGGCGGCGCCAC+AGG | - | chr4_2:68084022-68084041 | Msa0617540:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 68083610 | 68089536 | 68083610 | ID=Msa0617540;Name=Msa0617540 |
| chr4_2 | mRNA | 68083610 | 68089536 | 68083610 | ID=Msa0617540-mRNA-1;Parent=Msa0617540;Name=Msa0617540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=112|1|1|1|0.91|0.84|13|366|469 |
| chr4_2 | exon | 68083610 | 68084107 | 68083610 | ID=Msa0617540-mRNA-1:exon:19536;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68084440 | 68084557 | 68084440 | ID=Msa0617540-mRNA-1:exon:19535;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68084769 | 68084884 | 68084769 | ID=Msa0617540-mRNA-1:exon:19534;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68085357 | 68085429 | 68085357 | ID=Msa0617540-mRNA-1:exon:19533;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68085517 | 68085656 | 68085517 | ID=Msa0617540-mRNA-1:exon:19532;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68085782 | 68085888 | 68085782 | ID=Msa0617540-mRNA-1:exon:19531;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68085999 | 68086158 | 68085999 | ID=Msa0617540-mRNA-1:exon:19530;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68087599 | 68087697 | 68087599 | ID=Msa0617540-mRNA-1:exon:19529;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68087799 | 68087978 | 68087799 | ID=Msa0617540-mRNA-1:exon:19528;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68088354 | 68088432 | 68088354 | ID=Msa0617540-mRNA-1:exon:19527;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68088984 | 68089141 | 68088984 | ID=Msa0617540-mRNA-1:exon:19526;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68089250 | 68089315 | 68089250 | ID=Msa0617540-mRNA-1:exon:19525;Parent=Msa0617540-mRNA-1 |
| chr4_2 | exon | 68089443 | 68089536 | 68089443 | ID=Msa0617540-mRNA-1:exon:19524;Parent=Msa0617540-mRNA-1 |
| chr4_2 | five_prime_UTR | 68089443 | 68089536 | 68089443 | ID=Msa0617540-mRNA-1:five_prime_utr;Parent=Msa0617540-mRNA-1 |
| chr4_2 | five_prime_UTR | 68089298 | 68089315 | 68089298 | ID=Msa0617540-mRNA-1:five_prime_utr;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68089250 | 68089297 | 68089250 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68088984 | 68089141 | 68088984 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68088354 | 68088432 | 68088354 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68087799 | 68087978 | 68087799 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68087599 | 68087697 | 68087599 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68085999 | 68086158 | 68085999 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68085782 | 68085888 | 68085782 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68085517 | 68085656 | 68085517 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68085357 | 68085429 | 68085357 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68084769 | 68084884 | 68084769 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68084440 | 68084557 | 68084440 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | CDS | 68083976 | 68084107 | 68083976 | ID=Msa0617540-mRNA-1:cds;Parent=Msa0617540-mRNA-1 |
| chr4_2 | three_prime_UTR | 68083610 | 68083975 | 68083610 | ID=Msa0617540-mRNA-1:three_prime_utr;Parent=Msa0617540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
