Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298520 | XP_003596916.1 | 99.520 | 417 | 2 | 0 | 1 | 417 | 1 | 417 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298520 | sp|P42825|DNAJ2_ARATH | 83.055 | 419 | 69 | 2 | 1 | 417 | 1 | 419 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298520 | G7IRG5 | 99.520 | 417 | 2 | 0 | 1 | 417 | 1 | 417 | 0.0 | 858 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202930 | Msa0298520 | 0.809726 | 1.640718e-50 | -8.615850e-47 |
| Msa0228030 | Msa0298520 | 0.900502 | 6.873686e-78 | -8.615850e-47 |
| Msa0298520 | Msa0336360 | 0.912206 | 2.540204e-83 | -8.615850e-47 |
| Msa0298520 | Msa0342290 | 0.871694 | 5.621694e-67 | -8.615850e-47 |
| Msa0298520 | Msa0588120 | 0.807755 | 4.328481e-50 | -8.615850e-47 |
| Msa0298520 | Msa0708770 | 0.891950 | 2.486515e-74 | -8.615850e-47 |
| Msa0298520 | Msa0788110 | 0.842461 | 2.550035e-58 | -8.615850e-47 |
| Msa0298520 | Msa0805420 | 0.800948 | 1.133982e-48 | -8.615850e-47 |
| Msa0298520 | Msa1010460 | 0.819535 | 1.103754e-52 | -8.615850e-47 |
| Msa0298520 | Msa1075970 | 0.812603 | 3.901870e-51 | -8.615850e-47 |
| Msa0298520 | Msa1096550 | 0.827536 | 1.481791e-54 | -8.615850e-47 |
| Msa0298520 | Msa1128330 | 0.818192 | 2.227971e-52 | -8.615850e-47 |
| Msa0298520 | Msa1209670 | 0.819498 | 1.125134e-52 | -8.615850e-47 |
| Msa0298520 | Msa1211350 | 0.805648 | 1.206021e-49 | -8.615850e-47 |
| Msa0298520 | Msa1458030 | 0.836195 | 1.078814e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298520 | MtrunA17_Chr2g0322181 | 99.520 | 417 | 2 | 0 | 1 | 417 | 1 | 417 | 0.0 | 858 |
| Msa0298520 | MtrunA17_Chr4g0025401 | 91.169 | 419 | 32 | 3 | 1 | 417 | 1 | 416 | 0.0 | 686 |
| Msa0298520 | MtrunA17_Chr8g0334811 | 70.991 | 424 | 115 | 5 | 1 | 417 | 1 | 423 | 0.0 | 582 |
| Msa0298520 | MtrunA17_Chr7g0269841 | 37.322 | 351 | 180 | 9 | 14 | 358 | 27 | 343 | 2.18e-58 | 194 |
| Msa0298520 | MtrunA17_Chr4g0040501 | 33.333 | 360 | 204 | 10 | 14 | 358 | 5 | 343 | 7.01e-51 | 174 |
| Msa0298520 | MtrunA17_Chr2g0333221 | 32.143 | 364 | 221 | 11 | 11 | 357 | 68 | 422 | 2.86e-49 | 174 |
| Msa0298520 | MtrunA17_Chr4g0010781 | 34.463 | 354 | 186 | 11 | 14 | 347 | 87 | 414 | 1.25e-48 | 171 |
| Msa0298520 | MtrunA17_Chr3g0123861 | 33.144 | 353 | 217 | 9 | 14 | 357 | 83 | 425 | 2.45e-48 | 170 |
| Msa0298520 | MtrunA17_Chr2g0324921 | 32.234 | 394 | 154 | 9 | 14 | 358 | 5 | 334 | 2.35e-47 | 165 |
| Msa0298520 | MtrunA17_Chr2g0282741 | 33.333 | 360 | 199 | 11 | 14 | 358 | 5 | 338 | 3.74e-47 | 164 |
| Msa0298520 | MtrunA17_Chr3g0138471 | 32.213 | 357 | 194 | 7 | 14 | 358 | 5 | 325 | 4.37e-46 | 161 |
| Msa0298520 | MtrunA17_Chr6g0478651 | 31.793 | 368 | 225 | 11 | 14 | 365 | 69 | 426 | 5.87e-46 | 166 |
| Msa0298520 | MtrunA17_Chr2g0282761 | 34.018 | 341 | 199 | 8 | 14 | 343 | 5 | 330 | 1.61e-45 | 160 |
| Msa0298520 | MtrunA17_Chr4g0006391 | 30.151 | 398 | 161 | 9 | 14 | 358 | 5 | 338 | 7.86e-40 | 145 |
| Msa0298520 | MtrunA17_Chr3g0087741 | 30.645 | 372 | 212 | 15 | 1 | 355 | 80 | 422 | 4.40e-39 | 145 |
| Msa0298520 | MtrunA17_Chr5g0426951 | 27.957 | 372 | 221 | 11 | 5 | 355 | 75 | 420 | 4.14e-31 | 124 |
| Msa0298520 | MtrunA17_Chr5g0415751 | 36.552 | 145 | 90 | 1 | 214 | 358 | 18 | 160 | 2.65e-28 | 109 |
| Msa0298520 | MtrunA17_Chr3g0093111 | 34.752 | 141 | 90 | 1 | 218 | 358 | 172 | 310 | 1.34e-21 | 94.7 |
| Msa0298520 | MtrunA17_Chr3g0093111 | 27.136 | 199 | 108 | 5 | 14 | 180 | 3 | 196 | 6.77e-16 | 78.2 |
| Msa0298520 | MtrunA17_Chr3g0124801 | 34.483 | 145 | 92 | 2 | 215 | 358 | 149 | 291 | 4.08e-19 | 87.0 |
| Msa0298520 | MtrunA17_Chr2g0277721 | 32.639 | 144 | 96 | 1 | 215 | 358 | 117 | 259 | 4.80e-18 | 83.6 |
| Msa0298520 | MtrunA17_Chr8g0352451 | 46.392 | 97 | 43 | 3 | 12 | 104 | 71 | 162 | 4.31e-15 | 76.6 |
| Msa0298520 | MtrunA17_Chr7g0263971 | 52.564 | 78 | 31 | 2 | 4 | 76 | 360 | 436 | 3.01e-14 | 74.3 |
| Msa0298520 | MtrunA17_Chr5g0399201 | 43.750 | 80 | 38 | 1 | 10 | 82 | 9 | 88 | 3.68e-14 | 74.3 |
| Msa0298520 | MtrunA17_Chr1g0209551 | 52.941 | 68 | 28 | 1 | 15 | 78 | 18 | 85 | 8.18e-14 | 72.8 |
| Msa0298520 | MtrunA17_Chr1g0159511 | 43.878 | 98 | 44 | 4 | 12 | 104 | 5 | 96 | 2.14e-13 | 71.2 |
| Msa0298520 | MtrunA17_Chr1g0159491 | 48.571 | 70 | 32 | 2 | 13 | 78 | 6 | 75 | 5.92e-13 | 63.9 |
| Msa0298520 | MtrunA17_Chr5g0393371 | 40.206 | 97 | 49 | 3 | 12 | 104 | 5 | 96 | 1.94e-12 | 68.6 |
| Msa0298520 | MtrunA17_Chr5g0415731 | 32.215 | 149 | 63 | 5 | 11 | 146 | 3 | 126 | 3.20e-12 | 63.9 |
| Msa0298520 | MtrunA17_Chr5g0414471 | 37.255 | 102 | 50 | 3 | 15 | 105 | 27 | 125 | 1.14e-11 | 66.2 |
| Msa0298520 | MtrunA17_Chr7g0271891 | 40.000 | 75 | 37 | 1 | 14 | 80 | 17 | 91 | 3.61e-11 | 61.6 |
| Msa0298520 | MtrunA17_Chr3g0091361 | 47.297 | 74 | 34 | 2 | 14 | 82 | 6 | 79 | 4.37e-11 | 62.4 |
| Msa0298520 | MtrunA17_Chr7g0242951 | 46.154 | 65 | 32 | 1 | 15 | 76 | 29 | 93 | 7.81e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298520 | AT5G22060.1 | 83.055 | 419 | 69 | 2 | 1 | 417 | 1 | 419 | 0.0 | 684 |
| Msa0298520 | AT3G44110.1 | 85.036 | 421 | 58 | 3 | 1 | 417 | 1 | 420 | 0.0 | 655 |
| Msa0298520 | AT3G44110.2 | 87.651 | 332 | 39 | 2 | 1 | 331 | 1 | 331 | 0.0 | 530 |
| Msa0298520 | AT3G62600.1 | 35.775 | 355 | 182 | 11 | 14 | 358 | 27 | 345 | 7.75e-56 | 188 |
| Msa0298520 | AT1G80030.2 | 32.964 | 361 | 216 | 10 | 14 | 357 | 76 | 427 | 5.47e-53 | 184 |
| Msa0298520 | AT1G80030.3 | 32.964 | 361 | 216 | 10 | 14 | 357 | 76 | 427 | 5.47e-53 | 184 |
| Msa0298520 | AT1G80030.1 | 32.964 | 361 | 216 | 10 | 14 | 357 | 76 | 427 | 5.47e-53 | 184 |
| Msa0298520 | AT1G80030.4 | 32.964 | 361 | 216 | 10 | 14 | 357 | 76 | 427 | 6.91e-53 | 184 |
| Msa0298520 | AT2G20560.1 | 33.711 | 353 | 205 | 8 | 14 | 358 | 5 | 336 | 8.21e-50 | 172 |
| Msa0298520 | AT5G25530.2 | 32.597 | 362 | 198 | 9 | 14 | 358 | 5 | 337 | 9.30e-48 | 166 |
| Msa0298520 | AT5G48030.1 | 34.167 | 360 | 201 | 13 | 14 | 355 | 95 | 436 | 1.04e-47 | 169 |
| Msa0298520 | AT2G22360.1 | 32.075 | 371 | 229 | 10 | 14 | 378 | 87 | 440 | 5.79e-47 | 167 |
| Msa0298520 | AT4G39960.1 | 31.198 | 359 | 228 | 9 | 11 | 357 | 83 | 434 | 6.08e-45 | 162 |
| Msa0298520 | AT4G39960.2 | 31.198 | 359 | 228 | 9 | 11 | 357 | 83 | 434 | 6.08e-45 | 162 |
| Msa0298520 | AT5G25530.1 | 31.892 | 370 | 198 | 10 | 14 | 358 | 5 | 345 | 6.85e-45 | 159 |
| Msa0298520 | AT4G28480.1 | 31.198 | 359 | 217 | 8 | 14 | 358 | 5 | 347 | 1.28e-44 | 158 |
| Msa0298520 | AT3G08910.1 | 30.789 | 380 | 164 | 9 | 14 | 358 | 5 | 320 | 9.56e-40 | 145 |
| Msa0298520 | AT3G17830.1 | 30.303 | 363 | 225 | 10 | 12 | 355 | 62 | 415 | 5.42e-38 | 144 |
| Msa0298520 | AT5G01390.1 | 29.517 | 393 | 165 | 11 | 14 | 358 | 5 | 333 | 9.32e-38 | 140 |
| Msa0298520 | AT1G28210.3 | 27.895 | 380 | 229 | 11 | 7 | 368 | 42 | 394 | 1.08e-33 | 130 |
| Msa0298520 | AT1G28210.1 | 27.895 | 380 | 229 | 11 | 7 | 368 | 42 | 394 | 1.50e-33 | 130 |
| Msa0298520 | AT1G28210.2 | 27.895 | 380 | 229 | 11 | 7 | 368 | 42 | 394 | 1.84e-33 | 130 |
| Msa0298520 | AT2G20550.1 | 37.241 | 145 | 89 | 1 | 214 | 358 | 141 | 283 | 1.06e-26 | 108 |
| Msa0298520 | AT2G20550.2 | 37.241 | 145 | 89 | 1 | 214 | 358 | 141 | 283 | 1.06e-26 | 108 |
| Msa0298520 | AT3G47940.1 | 36.552 | 145 | 90 | 1 | 214 | 358 | 204 | 346 | 1.82e-26 | 109 |
| Msa0298520 | AT3G47940.1 | 34.021 | 194 | 67 | 4 | 14 | 146 | 5 | 198 | 1.12e-20 | 93.2 |
| Msa0298520 | AT5G01390.2 | 35.507 | 138 | 87 | 1 | 221 | 358 | 140 | 275 | 1.11e-23 | 100 |
| Msa0298520 | AT5G01390.2 | 40.741 | 108 | 43 | 3 | 14 | 100 | 5 | 112 | 1.78e-16 | 79.7 |
| Msa0298520 | AT4G28480.2 | 34.694 | 147 | 92 | 2 | 212 | 358 | 147 | 289 | 1.68e-23 | 100 |
| Msa0298520 | AT4G28480.2 | 43.750 | 112 | 50 | 2 | 14 | 120 | 5 | 108 | 6.04e-18 | 84.3 |
| Msa0298520 | AT1G59725.1 | 36.957 | 138 | 85 | 1 | 221 | 358 | 193 | 328 | 7.45e-23 | 99.0 |
| Msa0298520 | AT1G59725.1 | 32.955 | 176 | 75 | 4 | 14 | 146 | 5 | 180 | 4.32e-19 | 88.2 |
| Msa0298520 | AT1G10350.1 | 36.552 | 145 | 87 | 3 | 214 | 358 | 207 | 346 | 7.94e-23 | 99.4 |
| Msa0298520 | AT1G10350.1 | 32.308 | 195 | 70 | 6 | 14 | 146 | 5 | 199 | 3.69e-19 | 88.6 |
| Msa0298520 | AT5G01390.4 | 35.870 | 184 | 70 | 6 | 14 | 149 | 5 | 188 | 7.49e-22 | 94.0 |
| Msa0298520 | AT1G11040.1 | 37.500 | 136 | 83 | 1 | 215 | 350 | 291 | 424 | 4.04e-20 | 92.4 |
| Msa0298520 | AT1G44160.1 | 32.593 | 135 | 89 | 1 | 224 | 358 | 221 | 353 | 1.71e-17 | 84.0 |
| Msa0298520 | AT5G01390.3 | 40.741 | 108 | 43 | 3 | 14 | 100 | 5 | 112 | 9.72e-17 | 79.7 |
| Msa0298520 | AT2G21510.5 | 44.330 | 97 | 45 | 3 | 12 | 104 | 5 | 96 | 1.79e-15 | 77.4 |
| Msa0298520 | AT2G21510.3 | 44.330 | 97 | 45 | 3 | 12 | 104 | 5 | 96 | 2.50e-15 | 77.4 |
| Msa0298520 | AT2G21510.1 | 44.330 | 97 | 45 | 3 | 12 | 104 | 5 | 96 | 2.50e-15 | 77.4 |
| Msa0298520 | AT2G21510.2 | 44.330 | 97 | 45 | 3 | 12 | 104 | 5 | 96 | 2.57e-15 | 77.4 |
| Msa0298520 | AT2G21510.4 | 44.330 | 97 | 45 | 3 | 12 | 104 | 5 | 96 | 2.57e-15 | 77.4 |
| Msa0298520 | AT5G05750.1 | 41.748 | 103 | 46 | 3 | 14 | 102 | 115 | 217 | 4.26e-14 | 72.8 |
| Msa0298520 | AT4G39150.3 | 42.268 | 97 | 47 | 3 | 12 | 104 | 5 | 96 | 9.46e-14 | 72.4 |
| Msa0298520 | AT4G39150.1 | 42.268 | 97 | 47 | 3 | 12 | 104 | 5 | 96 | 9.46e-14 | 72.4 |
| Msa0298520 | AT4G39150.2 | 42.268 | 97 | 47 | 3 | 12 | 104 | 5 | 96 | 9.46e-14 | 72.4 |
| Msa0298520 | AT1G59980.2 | 47.059 | 68 | 32 | 1 | 15 | 78 | 25 | 92 | 4.24e-13 | 70.5 |
| Msa0298520 | AT1G59980.1 | 47.059 | 68 | 32 | 1 | 15 | 78 | 25 | 92 | 6.38e-13 | 70.5 |
| Msa0298520 | AT5G03160.1 | 50.000 | 94 | 40 | 4 | 4 | 92 | 361 | 452 | 1.18e-12 | 69.7 |
| Msa0298520 | AT1G68370.1 | 51.471 | 68 | 29 | 1 | 15 | 78 | 19 | 86 | 1.25e-12 | 69.7 |
| Msa0298520 | AT3G57340.1 | 42.424 | 99 | 42 | 3 | 14 | 97 | 114 | 212 | 1.45e-12 | 68.9 |
| Msa0298520 | AT3G57340.2 | 42.424 | 99 | 42 | 3 | 14 | 97 | 114 | 212 | 1.45e-12 | 68.9 |
| Msa0298520 | AT3G08970.1 | 47.297 | 74 | 36 | 1 | 15 | 85 | 29 | 102 | 1.74e-12 | 69.7 |
| Msa0298520 | AT3G08970.2 | 47.297 | 74 | 36 | 1 | 15 | 85 | 29 | 102 | 1.74e-12 | 69.7 |
| Msa0298520 | AT1G24120.1 | 37.255 | 102 | 50 | 4 | 15 | 105 | 22 | 120 | 3.95e-12 | 68.2 |
| Msa0298520 | AT3G12170.2 | 46.479 | 71 | 34 | 1 | 8 | 74 | 42 | 112 | 1.25e-11 | 65.5 |
| Msa0298520 | AT3G12170.1 | 31.707 | 164 | 84 | 6 | 8 | 166 | 6 | 146 | 1.26e-11 | 65.1 |
| Msa0298520 | AT1G21080.3 | 39.175 | 97 | 49 | 3 | 12 | 104 | 5 | 95 | 2.07e-11 | 65.9 |
| Msa0298520 | AT1G21080.1 | 39.175 | 97 | 49 | 3 | 12 | 104 | 5 | 95 | 2.19e-11 | 65.5 |
| Msa0298520 | AT2G35720.1 | 38.824 | 85 | 45 | 1 | 5 | 82 | 7 | 91 | 2.76e-11 | 65.9 |
| Msa0298520 | AT1G74250.1 | 44.928 | 69 | 29 | 2 | 14 | 73 | 12 | 80 | 3.79e-11 | 65.5 |
| Msa0298520 | AT5G49060.2 | 46.269 | 67 | 33 | 1 | 11 | 74 | 97 | 163 | 4.00e-11 | 64.7 |
| Msa0298520 | AT5G49060.1 | 46.269 | 67 | 33 | 1 | 11 | 74 | 97 | 163 | 4.00e-11 | 64.7 |
| Msa0298520 | AT1G76700.1 | 39.394 | 99 | 51 | 3 | 12 | 106 | 5 | 98 | 6.20e-11 | 64.3 |
| Msa0298520 | AT4G10130.2 | 43.939 | 66 | 30 | 1 | 14 | 72 | 12 | 77 | 6.22e-11 | 61.6 |
| Msa0298520 | AT4G10130.4 | 43.939 | 66 | 30 | 1 | 14 | 72 | 12 | 77 | 6.22e-11 | 61.6 |
| Msa0298520 | AT4G10130.1 | 43.939 | 66 | 30 | 1 | 14 | 72 | 12 | 77 | 6.22e-11 | 61.6 |
| Msa0298520 | AT4G10130.3 | 43.939 | 66 | 30 | 1 | 14 | 72 | 12 | 77 | 6.22e-11 | 61.6 |
| Msa0298520 | AT4G10130.5 | 43.939 | 66 | 30 | 1 | 14 | 72 | 12 | 77 | 6.22e-11 | 61.6 |
| Msa0298520 | AT1G56300.1 | 41.176 | 68 | 32 | 1 | 12 | 71 | 12 | 79 | 7.86e-11 | 60.8 |
| Msa0298520 | AT5G06910.1 | 45.714 | 70 | 34 | 1 | 9 | 74 | 25 | 94 | 9.22e-11 | 62.8 |
Find 141 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAATTCCGTTGAAAATT+AGG | 0.087723 | 2_3:-52560139 | Msa0298520:five_prime_UTR |
| CACAATTCCGTTGAAAATTA+GGG | 0.254292 | 2_3:-52560138 | Msa0298520:five_prime_UTR |
| TTCGGTGGAGGTGGATTTCC+TGG | 0.267655 | 2_3:-52559150 | Msa0298520:intron |
| TCACCCCTTGAAGGTCTCTT+TGG | 0.287702 | 2_3:-52558978 | Msa0298520:CDS |
| CCAATTTGCGCTGACTCATT+TGG | 0.293928 | 2_3:-52558309 | Msa0298520:CDS |
| GGAATGGGTGGTGGCGGTGG+TGG | 0.294243 | 2_3:-52559204 | Msa0298520:CDS |
| TCAGGATCACCACCCTTATC+AGG | 0.295880 | 2_3:+52559950 | None:intergenic |
| CCGTATAAAGATATCCTATA+TGG | 0.308033 | 2_3:-52557710 | Msa0298520:three_prime_UTR |
| CCAAATGAGTCAGCGCAAAT+TGG | 0.320936 | 2_3:+52558309 | None:intergenic |
| TTCACCCTTTCGTTTGAACT+TGG | 0.337178 | 2_3:+52558382 | None:intergenic |
| GAAGATATCTATGAGGCATT+TGG | 0.338997 | 2_3:-52558740 | Msa0298520:CDS |
| GAAGGAATGGGTGGTGGCGG+TGG | 0.340853 | 2_3:-52559207 | Msa0298520:CDS |
| ACTAAATACTATGAGATTCT+TGG | 0.343941 | 2_3:-52560040 | Msa0298520:CDS |
| AACTGAGATACAGGCCTTGC+TGG | 0.344090 | 2_3:+52557989 | None:intergenic |
| CCCCTTGAAGGTCTCTTTGG+AGG | 0.348117 | 2_3:-52558975 | Msa0298520:CDS |
| TTGCAGCCGGACACAGTTAC+TGG | 0.350028 | 2_3:-52558440 | Msa0298520:intron |
| CACCACCCATTCCTTCCTTA+AGG | 0.353366 | 2_3:+52559214 | None:intergenic |
| CCATATAGGATATCTTTATA+CGG | 0.354474 | 2_3:+52557710 | None:intergenic |
| TTAGTGTTATCACTCTTCTT+AGG | 0.362823 | 2_3:+52560058 | None:intergenic |
| TGTGCTGGTTGTCAAGGTTC+TGG | 0.368082 | 2_3:-52558766 | Msa0298520:CDS |
| TCTTGATCAGGTCAAGGCTT+TGG | 0.379949 | 2_3:-52558023 | Msa0298520:CDS |
| TTGCATTTGCTGAATCATAT+TGG | 0.385235 | 2_3:+52558714 | None:intergenic |
| TATTATCCTATGACTTAGAT+AGG | 0.390332 | 2_3:-52557588 | Msa0298520:three_prime_UTR |
| ACCACCCATTCCTTCCTTAA+GGG | 0.391516 | 2_3:+52559215 | None:intergenic |
| TACGCTTTCTTCAAATCATC+GGG | 0.394989 | 2_3:+52559998 | None:intergenic |
| CACCCTTTCGTTTGAACTTG+GGG | 0.398325 | 2_3:+52558384 | None:intergenic |
| TCACCCTTTCGTTTGAACTT+GGG | 0.404206 | 2_3:+52558383 | None:intergenic |
| AAGATATCTATGAGGCATTT+GGG | 0.411623 | 2_3:-52558739 | Msa0298520:CDS |
| ATGAAAGGCCTCTGGTACAT+TGG | 0.411721 | 2_3:+52558097 | None:intergenic |
| TTGTGAAATTTGAAGATGTT+TGG | 0.412460 | 2_3:-52560088 | Msa0298520:exon |
| TGAGTCTCTGTCTCTTGATC+AGG | 0.415051 | 2_3:-52558035 | Msa0298520:CDS |
| GTGCTCAGCAGTAATGAGTT+TGG | 0.416716 | 2_3:-52557823 | Msa0298520:exon |
| AATTATAAAATTAACCATAT+AGG | 0.417706 | 2_3:+52557696 | None:intergenic |
| ACATCCTTGCAATGAATGTA+AGG | 0.418761 | 2_3:-52558692 | Msa0298520:CDS |
| CTTTGGAGGATCTTTACCTT+GGG | 0.422824 | 2_3:-52558961 | Msa0298520:CDS |
| AGAGCTTGCACAAGCTTATG+AGG | 0.426543 | 2_3:-52559289 | Msa0298520:CDS |
| ATGTCTGTCAACTGAGATAC+AGG | 0.432545 | 2_3:+52557980 | None:intergenic |
| AAAGATGAAAAGATGTCAAA+TGG | 0.433471 | 2_3:+52559174 | None:intergenic |
| TTCCGTTGAAAATTAGGGTT+AGG | 0.435763 | 2_3:-52560133 | Msa0298520:five_prime_UTR |
| CCTTCTCTCCCTTGCACTGT+GGG | 0.438316 | 2_3:+52558635 | None:intergenic |
| TCATATACCTCACGCTTCTC+AGG | 0.445588 | 2_3:+52559255 | None:intergenic |
| GAGTTTGGAGATGTCCTTCA+TGG | 0.448651 | 2_3:-52557808 | Msa0298520:three_prime_UTR |
| TCCCTCACTGAGGCTTTATG+TGG | 0.451630 | 2_3:-52558335 | Msa0298520:CDS |
| TGCAATGAATGTAAGGGTAC+TGG | 0.456888 | 2_3:-52558685 | Msa0298520:CDS |
| TCATCTTTCTTCGGTGGAGG+TGG | 0.461355 | 2_3:-52559159 | Msa0298520:CDS |
| GTATGGTGAAGATGCCCTTA+AGG | 0.462316 | 2_3:-52559229 | Msa0298520:CDS |
| GGTTTGATTTAATCAATAGT+TGG | 0.465413 | 2_3:+52558279 | None:intergenic |
| ATACGCTTTCTTCAAATCAT+CGG | 0.468985 | 2_3:+52559997 | None:intergenic |
| CGTGAGGTATATGATCAGTA+TGG | 0.471347 | 2_3:-52559246 | Msa0298520:CDS |
| TCTTTGGAGGATCTTTACCT+TGG | 0.472410 | 2_3:-52558962 | Msa0298520:CDS |
| GATTAAGAATCATCCTGATA+AGG | 0.476346 | 2_3:-52559963 | Msa0298520:CDS |
| GGATGTCGTTCACCCCTTGA+AGG | 0.478745 | 2_3:-52558987 | Msa0298520:CDS |
| GAGATCGTGAATGATTATCT+TGG | 0.480627 | 2_3:-52557478 | None:intergenic |
| AGATCGATGCCCACAGTGCA+AGG | 0.481792 | 2_3:-52558644 | Msa0298520:CDS |
| ATTAAGAATCATCCTGATAA+GGG | 0.485570 | 2_3:-52559962 | Msa0298520:CDS |
| TACAGGAAAGGATCAAAGTC+TGG | 0.495336 | 2_3:-52558802 | Msa0298520:intron |
| TGCCCTTCATGAAAGGCCTC+TGG | 0.498481 | 2_3:+52558089 | None:intergenic |
| CCAGGCTTGACAACTTCTCC+AGG | 0.499453 | 2_3:+52558257 | None:intergenic |
| ATATCTCCAGTAACTGTGTC+CGG | 0.501009 | 2_3:+52558434 | None:intergenic |
| GGTGCTTCGATGACCTGTGC+TGG | 0.505989 | 2_3:-52558781 | Msa0298520:CDS |
| GATAATAAAGCATGCAAGGA+AGG | 0.508424 | 2_3:+52557604 | None:intergenic |
| CTTGAAGTTCATGTTGAGAA+GGG | 0.510818 | 2_3:-52558592 | Msa0298520:CDS |
| AATATGAATTACACTAACCT+AGG | 0.511562 | 2_3:+52557526 | None:intergenic |
| GCATCGATCTTTGTCACTGA+TGG | 0.515086 | 2_3:+52558657 | None:intergenic |
| TTGTGAAGTACGCGATGCCA+TGG | 0.515136 | 2_3:+52560164 | None:intergenic |
| ATCCTCCAAAGAGACCTTCA+AGG | 0.518323 | 2_3:+52558973 | None:intergenic |
| AAGGAAGGAATGGGTGGTGG+CGG | 0.520461 | 2_3:-52559210 | Msa0298520:CDS |
| TACAAGGCAATCAATGATGA+AGG | 0.521364 | 2_3:-52558124 | Msa0298520:CDS |
| CACCCCAAGTTCAAACGAAA+GGG | 0.528668 | 2_3:-52558386 | Msa0298520:CDS |
| AGATGCCCTTAAGGAAGGAA+TGG | 0.532671 | 2_3:-52559220 | Msa0298520:CDS |
| TGATCAAGAGACAGAGACTC+AGG | 0.533617 | 2_3:+52558037 | None:intergenic |
| CCTGGAGAAGTTGTCAAGCC+TGG | 0.534032 | 2_3:-52558257 | Msa0298520:intron |
| GGTCAGAAGATTACCTTCCC+TGG | 0.534089 | 2_3:-52558559 | Msa0298520:CDS |
| TTCATCAGCTTCACCAGGGA+AGG | 0.534704 | 2_3:+52558546 | None:intergenic |
| TGGTTATGCAGATTCATACA+AGG | 0.537406 | 2_3:-52558140 | Msa0298520:intron |
| TAACACATACCCCTTGCACT+TGG | 0.540192 | 2_3:+52558898 | None:intergenic |
| TTTGTACCTATCTAAGTCAT+AGG | 0.542810 | 2_3:+52557582 | None:intergenic |
| ACTTGAAGTTCATGTTGAGA+AGG | 0.543623 | 2_3:-52558593 | Msa0298520:CDS |
| CTTAAGGAAGGAATGGGTGG+TGG | 0.547958 | 2_3:-52559213 | Msa0298520:CDS |
| TGTCTTGTGCTCCAAGTGCA+AGG | 0.549478 | 2_3:-52558909 | Msa0298520:CDS |
| TACCAGAGGCCTTTCATGAA+GGG | 0.550239 | 2_3:-52558091 | Msa0298520:CDS |
| TCTGTCTCTTGATCAGGTCA+AGG | 0.553837 | 2_3:-52558029 | Msa0298520:CDS |
| GATGCCCTTAAGGAAGGAAT+GGG | 0.556456 | 2_3:-52559219 | Msa0298520:CDS |
| CCCACAGTGCAAGGGAGAGA+AGG | 0.557002 | 2_3:-52558635 | Msa0298520:CDS |
| CGTCTTTGTACTTCAACAGA+AGG | 0.558455 | 2_3:-52558411 | Msa0298520:CDS |
| TTGAAGAAGAGACAAGAAGA+AGG | 0.558667 | 2_3:-52557913 | Msa0298520:CDS |
| TAAAGCTTGCCCTTCATGAA+AGG | 0.559348 | 2_3:+52558082 | None:intergenic |
| GTCTTGTGCTCCAAGTGCAA+GGG | 0.560067 | 2_3:-52558908 | Msa0298520:CDS |
| ACCGCTTCATCAGCTTCACC+AGG | 0.560539 | 2_3:+52558541 | None:intergenic |
| ATGACCTGTGCTGGTTGTCA+AGG | 0.561075 | 2_3:-52558772 | Msa0298520:CDS |
| GTTGAGAAGGGGATGCAGAA+TGG | 0.563375 | 2_3:-52558580 | Msa0298520:CDS |
| GTACCAGAGGCCTTTCATGA+AGG | 0.566111 | 2_3:-52558092 | Msa0298520:CDS |
| ATAGGATAATAAAGCATGCA+AGG | 0.566985 | 2_3:+52557600 | None:intergenic |
| ACTGAGATACAGGCCTTGCT+GGG | 0.567469 | 2_3:+52557990 | None:intergenic |
| GGTGAAGATGCCCTTAAGGA+AGG | 0.569050 | 2_3:-52559225 | Msa0298520:CDS |
| TCAGTTGACAGACATGGAGC+TGG | 0.570239 | 2_3:-52557972 | Msa0298520:CDS |
| GTGGTAGTAGCAGAGGAAGA+AGG | 0.572018 | 2_3:-52559024 | Msa0298520:CDS |
| ACAGGTGGTGGTAGTAGCAG+AGG | 0.575959 | 2_3:-52559031 | Msa0298520:intron |
| TTTCACTGATTATCTCCCCT+AGG | 0.581750 | 2_3:-52557543 | Msa0298520:three_prime_UTR |
| CCCTGGTGAAGCTGATGAAG+CGG | 0.582550 | 2_3:-52558542 | Msa0298520:intron |
| AGAACCTTGACAACCAGCAC+AGG | 0.585983 | 2_3:+52558768 | None:intergenic |
| TGGAGACAATTCTCCCAGCA+AGG | 0.587524 | 2_3:-52558003 | Msa0298520:CDS |
| ACACCCCAAGTTCAAACGAA+AGG | 0.592574 | 2_3:-52558387 | Msa0298520:CDS |
| TGTACTCTTTGAGCACCACC+AGG | 0.594168 | 2_3:+52557848 | None:intergenic |
| GAGCTAAAACACATCCATGA+AGG | 0.594887 | 2_3:+52557794 | None:intergenic |
| TCCTCCAAAGAGACCTTCAA+GGG | 0.596017 | 2_3:+52558974 | None:intergenic |
| TTGAAGTTCATGTTGAGAAG+GGG | 0.603095 | 2_3:-52558591 | Msa0298520:CDS |
| AGCTCTGTTGGGCAAAACAG+TGG | 0.604897 | 2_3:-52557776 | Msa0298520:three_prime_UTR |
| GTACCCTTACATTCATTGCA+AGG | 0.605875 | 2_3:+52558688 | None:intergenic |
| TGTGAAGTACGCGATGCCAT+GGG | 0.606204 | 2_3:+52560165 | None:intergenic |
| ATATGAATTACACTAACCTA+GGG | 0.609821 | 2_3:+52557527 | None:intergenic |
| CAGGCTTGACAACTTCTCCA+GGG | 0.612975 | 2_3:+52558258 | None:intergenic |
| TAAGGGTGGTGATCCTGAAA+AGG | 0.613088 | 2_3:-52559945 | Msa0298520:intron |
| TGTATCTCAGTTGACAGACA+TGG | 0.616220 | 2_3:-52557978 | Msa0298520:CDS |
| GCCCTTAAGGAAGGAATGGG+TGG | 0.620209 | 2_3:-52559216 | Msa0298520:CDS |
| GATGAGGATGATGAAATGCC+TGG | 0.624859 | 2_3:-52557866 | Msa0298520:CDS |
| AAGGCAGCAAGCTCAGCAAG+AGG | 0.624868 | 2_3:-52557894 | Msa0298520:CDS |
| ACCTTCTCTCCCTTGCACTG+TGG | 0.630501 | 2_3:+52558634 | None:intergenic |
| GATCGATGCCCACAGTGCAA+GGG | 0.633588 | 2_3:-52558643 | Msa0298520:CDS |
| AAAGCTTCTTAGATGTCCCA+AGG | 0.634241 | 2_3:+52558945 | None:intergenic |
| TCTTGTGCTCCAAGTGCAAG+GGG | 0.635966 | 2_3:-52558907 | Msa0298520:intron |
| CTATTGATTAAATCAAACCC+TGG | 0.637960 | 2_3:-52558275 | Msa0298520:CDS |
| AGAGGAAGAAGGCAGAGACG+TGG | 0.638556 | 2_3:-52559013 | Msa0298520:CDS |
| CATCCTTGCAATGAATGTAA+GGG | 0.643345 | 2_3:-52558691 | Msa0298520:CDS |
| AAGAAGGCAGAGACGTGGTG+AGG | 0.643979 | 2_3:-52559008 | Msa0298520:CDS |
| TCAGCAAGAGGCATATGATG+AGG | 0.654664 | 2_3:-52557882 | Msa0298520:CDS |
| GCGTGACAAATACTTTCCCA+TGG | 0.659330 | 2_3:-52560181 | Msa0298520:five_prime_UTR |
| ACCACATAAAGCCTCAGTGA+GGG | 0.659830 | 2_3:+52558334 | None:intergenic |
| CATGGAGCTGGATGAGTGTG+AGG | 0.667513 | 2_3:-52557960 | Msa0298520:CDS |
| GATCAAGAGACAGAGACTCA+GGG | 0.667543 | 2_3:+52558038 | None:intergenic |
| AAGGAATGCCAATGTACCAG+AGG | 0.667557 | 2_3:-52558105 | Msa0298520:CDS |
| CTGGTATGAAGATATCTATG+AGG | 0.673684 | 2_3:-52558747 | Msa0298520:CDS |
| GAGTGATCCTGAGAAGCGTG+AGG | 0.676105 | 2_3:-52559262 | Msa0298520:CDS |
| AAGAATCATCCTGATAAGGG+TGG | 0.677133 | 2_3:-52559959 | Msa0298520:CDS |
| CCGCTTCATCAGCTTCACCA+GGG | 0.690995 | 2_3:+52558542 | None:intergenic |
| GCTTTACATTCACTTCACTG+TGG | 0.705179 | 2_3:-52558065 | Msa0298520:CDS |
| CCTCCAAAGAGACCTTCAAG+GGG | 0.727234 | 2_3:+52558975 | None:intergenic |
| AACCACATAAAGCCTCAGTG+AGG | 0.740190 | 2_3:+52558333 | None:intergenic |
| TATGAATTACACTAACCTAG+GGG | 0.761902 | 2_3:+52557528 | None:intergenic |
| GCACACATTGTCCCTCACTG+AGG | 0.763892 | 2_3:-52558345 | Msa0298520:CDS |
| GAGGATGATGAAATGCCTGG+TGG | 0.804018 | 2_3:-52557863 | Msa0298520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAGATTTTTAAATTA+AGG | - | chr2_3:52557935-52557954 | Msa0298520:CDS | 10.0% |
| !!! | ATTTGAGATTTTTAAATTAA+GGG | - | chr2_3:52557936-52557955 | Msa0298520:CDS | 10.0% |
| !! | AATTATAAAATTAACCATAT+AGG | + | chr2_3:52559966-52559985 | None:intergenic | 10.0% |
| !! | TTATCTTTGAATTTGATTAT+TGG | - | chr2_3:52557746-52557765 | Msa0298520:three_prime_UTR | 15.0% |
| !!! | TTTGAGATTTTTAAATTAAG+GGG | - | chr2_3:52557937-52557956 | Msa0298520:CDS | 15.0% |
| !!! | AAAAGTGATTTTTTTACTAT+AGG | - | chr2_3:52557977-52557996 | Msa0298520:CDS | 15.0% |
| !! | ATTGAATTATATAATTGTTG+TGG | - | chr2_3:52558137-52558156 | Msa0298520:intron | 15.0% |
| !! | ATTAGTTAATTGATGAAATT+AGG | - | chr2_3:52558310-52558329 | Msa0298520:CDS | 15.0% |
| !! | TTAGTTAATTGATGAAATTA+GGG | - | chr2_3:52558311-52558330 | Msa0298520:CDS | 15.0% |
| !!! | CTTGTTTGTTATTTTAATTT+AGG | - | chr2_3:52558540-52558559 | Msa0298520:intron | 15.0% |
| !!! | TTATTTTAATTTAGGAGATT+AGG | - | chr2_3:52558548-52558567 | Msa0298520:CDS | 15.0% |
| !!! | TATTTTAATTTAGGAGATTA+GGG | - | chr2_3:52558549-52558568 | Msa0298520:CDS | 15.0% |
| !!! | AAAATTTTAAAGATACAATC+AGG | - | chr2_3:52560159-52560178 | Msa0298520:five_prime_UTR | 15.0% |
| !!! | ATAAAAAAAACAACCTTTTC+AGG | + | chr2_3:52557730-52557749 | None:intergenic | 20.0% |
| !!! | ATTGAATTTGATAATTGTTG+TGG | - | chr2_3:52557810-52557829 | Msa0298520:three_prime_UTR | 20.0% |
| !!! | AATAGTGATTAGTTGAATTT+AGG | - | chr2_3:52557837-52557856 | Msa0298520:CDS | 20.0% |
| !!! | ATAGTGATTAGTTGAATTTA+GGG | - | chr2_3:52557838-52557857 | Msa0298520:CDS | 20.0% |
| !!! | ATTGTTAGTTGTATTGATAT+TGG | - | chr2_3:52558185-52558204 | Msa0298520:intron | 20.0% |
| !!! | TTGTTAGTTGTATTGATATT+GGG | - | chr2_3:52558186-52558205 | Msa0298520:intron | 20.0% |
| !!! | AATTGTGATTAGTTAGTTTT+AGG | - | chr2_3:52558230-52558249 | Msa0298520:intron | 20.0% |
| !!! | ATTGTGATTAGTTAGTTTTA+GGG | - | chr2_3:52558231-52558250 | Msa0298520:intron | 20.0% |
| !! | AAAAATTGCTTAATAAGAGA+GGG | + | chr2_3:52560034-52560053 | None:intergenic | 20.0% |
| !! | AAAAAATTGCTTAATAAGAG+AGG | + | chr2_3:52560035-52560054 | None:intergenic | 20.0% |
| ! | TTGTGAAATTTGAAGATGTT+TGG | - | chr2_3:52557571-52557590 | Msa0298520:three_prime_UTR | 25.0% |
| ! | ACTAAATACTATGAGATTCT+TGG | - | chr2_3:52557619-52557638 | Msa0298520:three_prime_UTR | 25.0% |
| ! | ATTAAGAATCATCCTGATAA+GGG | - | chr2_3:52557697-52557716 | Msa0298520:three_prime_UTR | 25.0% |
| ! | GATTATTGGATTATCTGATT+TGG | - | chr2_3:52557760-52557779 | Msa0298520:three_prime_UTR | 25.0% |
| ! | TTGGTAGAATGATATTTGTT+GGG | - | chr2_3:52557891-52557910 | Msa0298520:CDS | 25.0% |
| !!! | TTGGTATTGATTATGCAATT+AGG | - | chr2_3:52558059-52558078 | Msa0298520:CDS | 25.0% |
| ! | ATTGGGTTATATAATTGTTG+TGG | - | chr2_3:52558203-52558222 | Msa0298520:intron | 25.0% |
| ! | AAAGATGAAAAGATGTCAAA+TGG | + | chr2_3:52558488-52558507 | None:intergenic | 25.0% |
| ! | ATCATATTGTATTTGTGAAC+AGG | - | chr2_3:52558610-52558629 | Msa0298520:CDS | 25.0% |
| !!! | GTTTGTTGGTATTTTTCTAA+TGG | - | chr2_3:52558802-52558821 | Msa0298520:intron | 25.0% |
| !! | GGTTTGATTTAATCAATAGT+TGG | + | chr2_3:52559383-52559402 | None:intergenic | 25.0% |
| !! | TGCTGAAATTTTCAATCTTT+TGG | - | chr2_3:52559499-52559518 | Msa0298520:intron | 25.0% |
| ! | CCATATAGGATATCTTTATA+CGG | + | chr2_3:52559952-52559971 | None:intergenic | 25.0% |
| ! | TATTATCCTATGACTTAGAT+AGG | - | chr2_3:52560071-52560090 | Msa0298520:CDS | 25.0% |
| ! | ATATGAATTACACTAACCTA+GGG | + | chr2_3:52560135-52560154 | None:intergenic | 25.0% |
| ! | AATATGAATTACACTAACCT+AGG | + | chr2_3:52560136-52560155 | None:intergenic | 25.0% |
| TCACAATTCCGTTGAAAATT+AGG | - | chr2_3:52557520-52557539 | Msa0298520:three_prime_UTR | 30.0% | |
| CACAATTCCGTTGAAAATTA+GGG | - | chr2_3:52557521-52557540 | Msa0298520:three_prime_UTR | 30.0% | |
| ! | AACCTAACCCTAATTTTCAA+CGG | + | chr2_3:52557531-52557550 | None:intergenic | 30.0% |
| TTAGTGTTATCACTCTTCTT+AGG | + | chr2_3:52557604-52557623 | None:intergenic | 30.0% | |
| ATACGCTTTCTTCAAATCAT+CGG | + | chr2_3:52557665-52557684 | None:intergenic | 30.0% | |
| GATTAAGAATCATCCTGATA+AGG | - | chr2_3:52557696-52557715 | Msa0298520:three_prime_UTR | 30.0% | |
| !! | AGGGTTAGTTTGATTGAATT+AGG | - | chr2_3:52557857-52557876 | Msa0298520:CDS | 30.0% |
| !! | GGGTTAGTTTGATTGAATTA+GGG | - | chr2_3:52557858-52557877 | Msa0298520:CDS | 30.0% |
| TTTGATTGAATTAGGGTTGT+GGG | - | chr2_3:52557865-52557884 | Msa0298520:CDS | 30.0% | |
| ! | GTTGGTAGAATGATATTTGT+TGG | - | chr2_3:52557890-52557909 | Msa0298520:CDS | 30.0% |
| ! | TGGTAGAATGATATTTGTTG+GGG | - | chr2_3:52557892-52557911 | Msa0298520:CDS | 30.0% |
| AATATCAATCCCATTAGCTA+CGG | + | chr2_3:52558007-52558026 | None:intergenic | 30.0% | |
| ! | TTACCCAATTGATTGTTGTT+AGG | - | chr2_3:52558032-52558051 | Msa0298520:CDS | 30.0% |
| ACACCTAACAACAATCAATT+GGG | + | chr2_3:52558038-52558057 | None:intergenic | 30.0% | |
| TACACCTAACAACAATCAAT+TGG | + | chr2_3:52558039-52558058 | None:intergenic | 30.0% | |
| ! | TTGATTGTTGTTAGGTGTAT+TGG | - | chr2_3:52558040-52558059 | Msa0298520:CDS | 30.0% |
| AAAATCAAACTACCATAACC+CGG | + | chr2_3:52558277-52558296 | None:intergenic | 30.0% | |
| ! | GACATCTTTTCATCTTTCTT+CGG | - | chr2_3:52558491-52558510 | Msa0298520:intron | 30.0% |
| ATATTGTATTTGTGAACAGG+TGG | - | chr2_3:52558613-52558632 | Msa0298520:CDS | 30.0% | |
| ! | TTGGTATTTTTCTAATGGCT+CGG | - | chr2_3:52558807-52558826 | Msa0298520:intron | 30.0% |
| !! | TTGTTGATTGGTTTGATTAC+AGG | - | chr2_3:52558840-52558859 | Msa0298520:intron | 30.0% |
| ! | AAGATATCTATGAGGCATTT+GGG | - | chr2_3:52558920-52558939 | Msa0298520:CDS | 30.0% |
| ! | TTGCATTTGCTGAATCATAT+TGG | + | chr2_3:52558948-52558967 | None:intergenic | 30.0% |
| ! | CTATTGATTAAATCAAACCC+TGG | - | chr2_3:52559384-52559403 | Msa0298520:intron | 30.0% |
| ATGTGAATAATCTACATACC+AGG | + | chr2_3:52559423-52559442 | None:intergenic | 30.0% | |
| GTATGTAGATTATTCACATC+TGG | - | chr2_3:52559424-52559443 | Msa0298520:intron | 30.0% | |
| CCGTATAAAGATATCCTATA+TGG | - | chr2_3:52559949-52559968 | Msa0298520:CDS | 30.0% | |
| ATAGGATAATAAAGCATGCA+AGG | + | chr2_3:52560062-52560081 | None:intergenic | 30.0% | |
| TTTGTACCTATCTAAGTCAT+AGG | + | chr2_3:52560080-52560099 | None:intergenic | 30.0% | |
| TATGAATTACACTAACCTAG+GGG | + | chr2_3:52560134-52560153 | None:intergenic | 30.0% | |
| TTCCGTTGAAAATTAGGGTT+AGG | - | chr2_3:52557526-52557545 | Msa0298520:three_prime_UTR | 35.0% | |
| TACGCTTTCTTCAAATCATC+GGG | + | chr2_3:52557664-52557683 | None:intergenic | 35.0% | |
| GTTTGATTGAATTAGGGTTG+TGG | - | chr2_3:52557864-52557883 | Msa0298520:CDS | 35.0% | |
| TTGTTGGGGTTTATTTGTCA+TGG | - | chr2_3:52557906-52557925 | Msa0298520:CDS | 35.0% | |
| ATATCAATCCCATTAGCTAC+GGG | + | chr2_3:52558006-52558025 | None:intergenic | 35.0% | |
| AGGGTAGTGTGATTGAATTA+AGG | - | chr2_3:52558250-52558269 | Msa0298520:intron | 35.0% | |
| AAATCAAACTACCATAACCC+GGG | + | chr2_3:52558276-52558295 | None:intergenic | 35.0% | |
| !! | GGGTTATGGTAGTTTGATTT+TGG | - | chr2_3:52558276-52558295 | Msa0298520:CDS | 35.0% |
| ! | ATCTTTTCATCTTTCTTCGG+TGG | - | chr2_3:52558494-52558513 | Msa0298520:intron | 35.0% |
| AACAAACAAGAAACCATACC+AGG | + | chr2_3:52558530-52558549 | None:intergenic | 35.0% | |
| GGAGTTCTTACATTGTTGAT+TGG | - | chr2_3:52558828-52558847 | Msa0298520:intron | 35.0% | |
| !! | GATTGGTTTGATTACAGGAA+AGG | - | chr2_3:52558845-52558864 | Msa0298520:intron | 35.0% |
| CTGGTATGAAGATATCTATG+AGG | - | chr2_3:52558912-52558931 | Msa0298520:CDS | 35.0% | |
| ! | GAAGATATCTATGAGGCATT+TGG | - | chr2_3:52558919-52558938 | Msa0298520:CDS | 35.0% |
| ACATCCTTGCAATGAATGTA+AGG | - | chr2_3:52558967-52558986 | Msa0298520:CDS | 35.0% | |
| CATCCTTGCAATGAATGTAA+GGG | - | chr2_3:52558968-52558987 | Msa0298520:CDS | 35.0% | |
| ACTTGAAGTTCATGTTGAGA+AGG | - | chr2_3:52559066-52559085 | Msa0298520:intron | 35.0% | |
| CTTGAAGTTCATGTTGAGAA+GGG | - | chr2_3:52559067-52559086 | Msa0298520:intron | 35.0% | |
| TTGAAGTTCATGTTGAGAAG+GGG | - | chr2_3:52559068-52559087 | Msa0298520:intron | 35.0% | |
| ! | GACTGAATTTTGTTCGTCTT+TGG | - | chr2_3:52559476-52559495 | Msa0298520:intron | 35.0% |
| TGGTTATGCAGATTCATACA+AGG | - | chr2_3:52559519-52559538 | Msa0298520:intron | 35.0% | |
| TACAAGGCAATCAATGATGA+AGG | - | chr2_3:52559535-52559554 | Msa0298520:intron | 35.0% | |
| TTGAAGAAGAGACAAGAAGA+AGG | - | chr2_3:52559746-52559765 | Msa0298520:intron | 35.0% | |
| ! | CTGCAATTTTGCAAACACAA+GGG | + | chr2_3:52559993-52560012 | None:intergenic | 35.0% |
| GATAATAAAGCATGCAAGGA+AGG | + | chr2_3:52560058-52560077 | None:intergenic | 35.0% | |
| AAGAATCATCCTGATAAGGG+TGG | - | chr2_3:52557700-52557719 | Msa0298520:three_prime_UTR | 40.0% | |
| TATCAATCCCATTAGCTACG+GGG | + | chr2_3:52558005-52558024 | None:intergenic | 40.0% | |
| AGTGTGATTGAATTAAGGCC+CGG | - | chr2_3:52558255-52558274 | Msa0298520:intron | 40.0% | |
| CGTGAGGTATATGATCAGTA+TGG | - | chr2_3:52558413-52558432 | Msa0298520:CDS | 40.0% | |
| ! | TTTTCATCTTTCTTCGGTGG+AGG | - | chr2_3:52558497-52558516 | Msa0298520:intron | 40.0% |
| TTGTATTTGTGAACAGGTGG+TGG | - | chr2_3:52558616-52558635 | Msa0298520:CDS | 40.0% | |
| ! | TCTTTGGAGGATCTTTACCT+TGG | - | chr2_3:52558697-52558716 | Msa0298520:CDS | 40.0% |
| ! | CTTTGGAGGATCTTTACCTT+GGG | - | chr2_3:52558698-52558717 | Msa0298520:CDS | 40.0% |
| AAAGCTTCTTAGATGTCCCA+AGG | + | chr2_3:52558717-52558736 | None:intergenic | 40.0% | |
| AGGTCTATCTGCATGTTTGT+TGG | - | chr2_3:52558788-52558807 | Msa0298520:CDS | 40.0% | |
| TACAGGAAAGGATCAAAGTC+TGG | - | chr2_3:52558857-52558876 | Msa0298520:intron | 40.0% | |
| GTACCCTTACATTCATTGCA+AGG | + | chr2_3:52558974-52558993 | None:intergenic | 40.0% | |
| ! | TGCAATGAATGTAAGGGTAC+TGG | - | chr2_3:52558974-52558993 | Msa0298520:CDS | 40.0% |
| ! | TACAGTTCCTTAGTTTGAGC+TGG | - | chr2_3:52559154-52559173 | Msa0298520:CDS | 40.0% |
| CAACAATCCAGCTCAAACTA+AGG | + | chr2_3:52559164-52559183 | None:intergenic | 40.0% | |
| CTTATTGTTTGTCTTGCAGC+CGG | - | chr2_3:52559206-52559225 | Msa0298520:CDS | 40.0% | |
| ATATCTCCAGTAACTGTGTC+CGG | + | chr2_3:52559228-52559247 | None:intergenic | 40.0% | |
| CGTCTTTGTACTTCAACAGA+AGG | - | chr2_3:52559248-52559267 | Msa0298520:CDS | 40.0% | |
| TCACCCTTTCGTTTGAACTT+GGG | + | chr2_3:52559279-52559298 | None:intergenic | 40.0% | |
| TTCACCCTTTCGTTTGAACT+TGG | + | chr2_3:52559280-52559299 | None:intergenic | 40.0% | |
| TAAAGCTTGCCCTTCATGAA+AGG | + | chr2_3:52559580-52559599 | None:intergenic | 40.0% | |
| GCTTTACATTCACTTCACTG+TGG | - | chr2_3:52559594-52559613 | Msa0298520:intron | 40.0% | |
| ATGTCTGTCAACTGAGATAC+AGG | + | chr2_3:52559682-52559701 | None:intergenic | 40.0% | |
| TGTATCTCAGTTGACAGACA+TGG | - | chr2_3:52559681-52559700 | Msa0298520:intron | 40.0% | |
| GAGCTAAAACACATCCATGA+AGG | + | chr2_3:52559868-52559887 | None:intergenic | 40.0% | |
| !!! | TGGATGTGTTTTAGCTCTGT+TGG | - | chr2_3:52559871-52559890 | Msa0298520:intron | 40.0% |
| !!! | GGATGTGTTTTAGCTCTGTT+GGG | - | chr2_3:52559872-52559891 | Msa0298520:intron | 40.0% |
| ! | GCTGCAATTTTGCAAACACA+AGG | + | chr2_3:52559994-52560013 | None:intergenic | 40.0% |
| ! | TTTCACTGATTATCTCCCCT+AGG | - | chr2_3:52560116-52560135 | Msa0298520:five_prime_UTR | 40.0% |
| TAAGGGTGGTGATCCTGAAA+AGG | - | chr2_3:52557714-52557733 | Msa0298520:three_prime_UTR | 45.0% | |
| ! | GAATTAGGGTTGTGGGTTGT+TGG | - | chr2_3:52557872-52557891 | Msa0298520:CDS | 45.0% |
| TATAGGATCCCCGTAGCTAA+TGG | - | chr2_3:52557994-52558013 | Msa0298520:CDS | 45.0% | |
| ATAGGATCCCCGTAGCTAAT+GGG | - | chr2_3:52557995-52558014 | Msa0298520:CDS | 45.0% | |
| GTGTGATTGAATTAAGGCCC+GGG | - | chr2_3:52558256-52558275 | Msa0298520:intron | 45.0% | |
| TTGAATTAAGGCCCGGGTTA+TGG | - | chr2_3:52558262-52558281 | Msa0298520:CDS | 45.0% | |
| AGAGCTTGCACAAGCTTATG+AGG | - | chr2_3:52558370-52558389 | Msa0298520:CDS | 45.0% | |
| TCATATACCTCACGCTTCTC+AGG | + | chr2_3:52558407-52558426 | None:intergenic | 45.0% | |
| GTATGGTGAAGATGCCCTTA+AGG | - | chr2_3:52558430-52558449 | Msa0298520:CDS | 45.0% | |
| AGATGCCCTTAAGGAAGGAA+TGG | - | chr2_3:52558439-52558458 | Msa0298520:intron | 45.0% | |
| GATGCCCTTAAGGAAGGAAT+GGG | - | chr2_3:52558440-52558459 | Msa0298520:intron | 45.0% | |
| ACCACCCATTCCTTCCTTAA+GGG | + | chr2_3:52558447-52558466 | None:intergenic | 45.0% | |
| TCCTCCAAAGAGACCTTCAA+GGG | + | chr2_3:52558688-52558707 | None:intergenic | 45.0% | |
| ATCCTCCAAAGAGACCTTCA+AGG | + | chr2_3:52558689-52558708 | None:intergenic | 45.0% | |
| TAACACATACCCCTTGCACT+TGG | + | chr2_3:52558764-52558783 | None:intergenic | 45.0% | |
| ! | AGTGCAAGGGGTATGTGTTA+TGG | - | chr2_3:52558764-52558783 | Msa0298520:CDS | 45.0% |
| ! | CAAGGGGTATGTGTTATGGA+AGG | - | chr2_3:52558768-52558787 | Msa0298520:CDS | 45.0% |
| ! | GCATCGATCTTTGTCACTGA+TGG | + | chr2_3:52559005-52559024 | None:intergenic | 45.0% |
| ACACCCCAAGTTCAAACGAA+AGG | - | chr2_3:52559272-52559291 | Msa0298520:CDS | 45.0% | |
| CACCCCAAGTTCAAACGAAA+GGG | - | chr2_3:52559273-52559292 | Msa0298520:CDS | 45.0% | |
| CACCCTTTCGTTTGAACTTG+GGG | + | chr2_3:52559278-52559297 | None:intergenic | 45.0% | |
| ACCACATAAAGCCTCAGTGA+GGG | + | chr2_3:52559328-52559347 | None:intergenic | 45.0% | |
| AACCACATAAAGCCTCAGTG+AGG | + | chr2_3:52559329-52559348 | None:intergenic | 45.0% | |
| CCAAATGAGTCAGCGCAAAT+TGG | + | chr2_3:52559353-52559372 | None:intergenic | 45.0% | |
| !! | CCAATTTGCGCTGACTCATT+TGG | - | chr2_3:52559350-52559369 | Msa0298520:intron | 45.0% |
| AAGGAATGCCAATGTACCAG+AGG | - | chr2_3:52559554-52559573 | Msa0298520:intron | 45.0% | |
| ATGAAAGGCCTCTGGTACAT+TGG | + | chr2_3:52559565-52559584 | None:intergenic | 45.0% | |
| TACCAGAGGCCTTTCATGAA+GGG | - | chr2_3:52559568-52559587 | Msa0298520:intron | 45.0% | |
| GATCAAGAGACAGAGACTCA+GGG | + | chr2_3:52559624-52559643 | None:intergenic | 45.0% | |
| TGATCAAGAGACAGAGACTC+AGG | + | chr2_3:52559625-52559644 | None:intergenic | 45.0% | |
| TGAGTCTCTGTCTCTTGATC+AGG | - | chr2_3:52559624-52559643 | Msa0298520:intron | 45.0% | |
| TCTGTCTCTTGATCAGGTCA+AGG | - | chr2_3:52559630-52559649 | Msa0298520:intron | 45.0% | |
| TCTTGATCAGGTCAAGGCTT+TGG | - | chr2_3:52559636-52559655 | Msa0298520:intron | 45.0% | |
| ! | TCAGCAAGAGGCATATGATG+AGG | - | chr2_3:52559777-52559796 | Msa0298520:intron | 45.0% |
| GATGAGGATGATGAAATGCC+TGG | - | chr2_3:52559793-52559812 | Msa0298520:intron | 45.0% | |
| GTGCTCAGCAGTAATGAGTT+TGG | - | chr2_3:52559836-52559855 | Msa0298520:intron | 45.0% | |
| GAGTTTGGAGATGTCCTTCA+TGG | - | chr2_3:52559851-52559870 | Msa0298520:intron | 45.0% | |
| TGTGAAGTACGCGATGCCAT+GGG | + | chr2_3:52557497-52557516 | None:intergenic | 50.0% | |
| TTGTGAAGTACGCGATGCCA+TGG | + | chr2_3:52557498-52557517 | None:intergenic | 50.0% | |
| TCAGGATCACCACCCTTATC+AGG | + | chr2_3:52557712-52557731 | None:intergenic | 50.0% | |
| GGTGAAGATGCCCTTAAGGA+AGG | - | chr2_3:52558434-52558453 | Msa0298520:CDS | 50.0% | |
| CACCACCCATTCCTTCCTTA+AGG | + | chr2_3:52558448-52558467 | None:intergenic | 50.0% | |
| CTTAAGGAAGGAATGGGTGG+TGG | - | chr2_3:52558446-52558465 | Msa0298520:intron | 50.0% | |
| TCATCTTTCTTCGGTGGAGG+TGG | - | chr2_3:52558500-52558519 | Msa0298520:intron | 50.0% | |
| ! | TGGAGGTGGATTTCCTGGTA+TGG | - | chr2_3:52558514-52558533 | Msa0298520:intron | 50.0% |
| GTGGTAGTAGCAGAGGAAGA+AGG | - | chr2_3:52558635-52558654 | Msa0298520:CDS | 50.0% | |
| TCACCCCTTGAAGGTCTCTT+TGG | - | chr2_3:52558681-52558700 | Msa0298520:CDS | 50.0% | |
| CCTCCAAAGAGACCTTCAAG+GGG | + | chr2_3:52558687-52558706 | None:intergenic | 50.0% | |
| TGTCTTGTGCTCCAAGTGCA+AGG | - | chr2_3:52558750-52558769 | Msa0298520:CDS | 50.0% | |
| GTCTTGTGCTCCAAGTGCAA+GGG | - | chr2_3:52558751-52558770 | Msa0298520:CDS | 50.0% | |
| TCTTGTGCTCCAAGTGCAAG+GGG | - | chr2_3:52558752-52558771 | Msa0298520:CDS | 50.0% | |
| !! | ATGACCTGTGCTGGTTGTCA+AGG | - | chr2_3:52558887-52558906 | Msa0298520:intron | 50.0% |
| AGAACCTTGACAACCAGCAC+AGG | + | chr2_3:52558894-52558913 | None:intergenic | 50.0% | |
| !! | TGTGCTGGTTGTCAAGGTTC+TGG | - | chr2_3:52558893-52558912 | Msa0298520:intron | 50.0% |
| GTTGAGAAGGGGATGCAGAA+TGG | - | chr2_3:52559079-52559098 | Msa0298520:intron | 50.0% | |
| GGTCAGAAGATTACCTTCCC+TGG | - | chr2_3:52559100-52559119 | Msa0298520:intron | 50.0% | |
| TTCATCAGCTTCACCAGGGA+AGG | + | chr2_3:52559116-52559135 | None:intergenic | 50.0% | |
| !!! | GCTGATGAAGCGGTTGGTTT+TGG | - | chr2_3:52559127-52559146 | Msa0298520:intron | 50.0% |
| ! | TCCCTCACTGAGGCTTTATG+TGG | - | chr2_3:52559324-52559343 | Msa0298520:intron | 50.0% |
| CAGGCTTGACAACTTCTCCA+GGG | + | chr2_3:52559404-52559423 | None:intergenic | 50.0% | |
| GTACCAGAGGCCTTTCATGA+AGG | - | chr2_3:52559567-52559586 | Msa0298520:intron | 50.0% | |
| TGGAGACAATTCTCCCAGCA+AGG | - | chr2_3:52559656-52559675 | Msa0298520:intron | 50.0% | |
| ACTGAGATACAGGCCTTGCT+GGG | + | chr2_3:52559672-52559691 | None:intergenic | 50.0% | |
| AACTGAGATACAGGCCTTGC+TGG | + | chr2_3:52559673-52559692 | None:intergenic | 50.0% | |
| TCAGTTGACAGACATGGAGC+TGG | - | chr2_3:52559687-52559706 | Msa0298520:intron | 50.0% | |
| GAGGATGATGAAATGCCTGG+TGG | - | chr2_3:52559796-52559815 | Msa0298520:intron | 50.0% | |
| TGTACTCTTTGAGCACCACC+AGG | + | chr2_3:52559814-52559833 | None:intergenic | 50.0% | |
| AGCTCTGTTGGGCAAAACAG+TGG | - | chr2_3:52559883-52559902 | Msa0298520:intron | 50.0% | |
| ! | GAGTGATCCTGAGAAGCGTG+AGG | - | chr2_3:52558397-52558416 | Msa0298520:CDS | 55.0% |
| GCCCTTAAGGAAGGAATGGG+TGG | - | chr2_3:52558443-52558462 | Msa0298520:intron | 55.0% | |
| ! | AAGGAAGGAATGGGTGGTGG+CGG | - | chr2_3:52558449-52558468 | Msa0298520:intron | 55.0% |
| ! | TTCGGTGGAGGTGGATTTCC+TGG | - | chr2_3:52558509-52558528 | Msa0298520:intron | 55.0% |
| ! | ACAGGTGGTGGTAGTAGCAG+AGG | - | chr2_3:52558628-52558647 | Msa0298520:CDS | 55.0% |
| AGAGGAAGAAGGCAGAGACG+TGG | - | chr2_3:52558646-52558665 | Msa0298520:CDS | 55.0% | |
| AAGAAGGCAGAGACGTGGTG+AGG | - | chr2_3:52558651-52558670 | Msa0298520:CDS | 55.0% | |
| GGATGTCGTTCACCCCTTGA+AGG | - | chr2_3:52558672-52558691 | Msa0298520:CDS | 55.0% | |
| CCCCTTGAAGGTCTCTTTGG+AGG | - | chr2_3:52558684-52558703 | Msa0298520:CDS | 55.0% | |
| AGATCGATGCCCACAGTGCA+AGG | - | chr2_3:52559015-52559034 | Msa0298520:CDS | 55.0% | |
| GATCGATGCCCACAGTGCAA+GGG | - | chr2_3:52559016-52559035 | Msa0298520:CDS | 55.0% | |
| CCTTCTCTCCCTTGCACTGT+GGG | + | chr2_3:52559027-52559046 | None:intergenic | 55.0% | |
| ACCTTCTCTCCCTTGCACTG+TGG | + | chr2_3:52559028-52559047 | None:intergenic | 55.0% | |
| CCGCTTCATCAGCTTCACCA+GGG | + | chr2_3:52559120-52559139 | None:intergenic | 55.0% | |
| CCCTGGTGAAGCTGATGAAG+CGG | - | chr2_3:52559117-52559136 | Msa0298520:intron | 55.0% | |
| ACCGCTTCATCAGCTTCACC+AGG | + | chr2_3:52559121-52559140 | None:intergenic | 55.0% | |
| GGTGAAGCTGATGAAGCGGT+TGG | - | chr2_3:52559121-52559140 | Msa0298520:intron | 55.0% | |
| TTGCAGCCGGACACAGTTAC+TGG | - | chr2_3:52559219-52559238 | Msa0298520:CDS | 55.0% | |
| GCACACATTGTCCCTCACTG+AGG | - | chr2_3:52559314-52559333 | Msa0298520:intron | 55.0% | |
| CCAGGCTTGACAACTTCTCC+AGG | + | chr2_3:52559405-52559424 | None:intergenic | 55.0% | |
| CCTGGAGAAGTTGTCAAGCC+TGG | - | chr2_3:52559402-52559421 | Msa0298520:intron | 55.0% | |
| TGCCCTTCATGAAAGGCCTC+TGG | + | chr2_3:52559573-52559592 | None:intergenic | 55.0% | |
| CATGGAGCTGGATGAGTGTG+AGG | - | chr2_3:52559699-52559718 | Msa0298520:intron | 55.0% | |
| AAGGCAGCAAGCTCAGCAAG+AGG | - | chr2_3:52559765-52559784 | Msa0298520:intron | 55.0% | |
| GGTGCTTCGATGACCTGTGC+TGG | - | chr2_3:52558878-52558897 | Msa0298520:intron | 60.0% | |
| CCCACAGTGCAAGGGAGAGA+AGG | - | chr2_3:52559024-52559043 | Msa0298520:CDS | 60.0% | |
| !! | GAAGGAATGGGTGGTGGCGG+TGG | - | chr2_3:52558452-52558471 | Msa0298520:intron | 65.0% |
| !! | GGAATGGGTGGTGGCGGTGG+TGG | - | chr2_3:52558455-52558474 | Msa0298520:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52557479 | 52560202 | 52557479 | ID=Msa0298520;Name=Msa0298520 |
| chr2_3 | mRNA | 52557479 | 52560202 | 52557479 | ID=Msa0298520-mRNA-1;Parent=Msa0298520;Name=Msa0298520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=107|1|1|1|1|1|6|353|417 |
| chr2_3 | exon | 52557479 | 52558151 | 52557479 | ID=Msa0298520-mRNA-1:exon:16792;Parent=Msa0298520-mRNA-1 |
| chr2_3 | exon | 52558258 | 52558456 | 52558258 | ID=Msa0298520-mRNA-1:exon:16791;Parent=Msa0298520-mRNA-1 |
| chr2_3 | exon | 52558543 | 52558819 | 52558543 | ID=Msa0298520-mRNA-1:exon:16790;Parent=Msa0298520-mRNA-1 |
| chr2_3 | exon | 52558908 | 52559049 | 52558908 | ID=Msa0298520-mRNA-1:exon:16789;Parent=Msa0298520-mRNA-1 |
| chr2_3 | exon | 52559151 | 52559316 | 52559151 | ID=Msa0298520-mRNA-1:exon:16788;Parent=Msa0298520-mRNA-1 |
| chr2_3 | exon | 52559946 | 52560202 | 52559946 | ID=Msa0298520-mRNA-1:exon:16787;Parent=Msa0298520-mRNA-1 |
| chr2_3 | five_prime_UTR | 52560096 | 52560202 | 52560096 | ID=Msa0298520-mRNA-1:five_prime_utr;Parent=Msa0298520-mRNA-1 |
| chr2_3 | CDS | 52559946 | 52560095 | 52559946 | ID=Msa0298520-mRNA-1:cds;Parent=Msa0298520-mRNA-1 |
| chr2_3 | CDS | 52559151 | 52559316 | 52559151 | ID=Msa0298520-mRNA-1:cds;Parent=Msa0298520-mRNA-1 |
| chr2_3 | CDS | 52558908 | 52559049 | 52558908 | ID=Msa0298520-mRNA-1:cds;Parent=Msa0298520-mRNA-1 |
| chr2_3 | CDS | 52558543 | 52558819 | 52558543 | ID=Msa0298520-mRNA-1:cds;Parent=Msa0298520-mRNA-1 |
| chr2_3 | CDS | 52558258 | 52558456 | 52558258 | ID=Msa0298520-mRNA-1:cds;Parent=Msa0298520-mRNA-1 |
| chr2_3 | CDS | 52557832 | 52558151 | 52557832 | ID=Msa0298520-mRNA-1:cds;Parent=Msa0298520-mRNA-1 |
| chr2_3 | three_prime_UTR | 52557479 | 52557831 | 52557479 | ID=Msa0298520-mRNA-1:three_prime_utr;Parent=Msa0298520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
