AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458030 MtrunA17_Chr7g0221691 96.239 452 17 0 1 452 1 452 0.0 904
Msa1458030 MtrunA17_Chr7g0249421 67.164 335 101 6 84 409 51 385 3.72e-153 444
Msa1458030 MtrunA17_Chr8g0342431 52.736 402 129 5 42 410 1 374 2.42e-132 387
Msa1458030 MtrunA17_Chr4g0022171 53.892 334 146 4 86 418 54 380 5.37e-128 379
Msa1458030 MtrunA17_Chr2g0324061 48.441 417 198 8 42 452 1 406 1.19e-124 370
Msa1458030 MtrunA17_Chr7g0243571 52.199 341 153 4 84 422 46 378 5.46e-117 350
Msa1458030 MtrunA17_Chr4g0004971 50.774 323 141 5 89 409 38 344 2.79e-107 322
Msa1458030 MtrunA17_Chr7g0272061 48.923 325 153 3 88 410 50 363 5.61e-105 317
Msa1458030 MtrunA17_Chr4g0067711 48.589 319 144 5 93 410 55 354 4.35e-102 308
Msa1458030 MtrunA17_Chr1g0192421 46.914 324 152 3 88 410 48 352 2.66e-101 306
Msa1458030 MtrunA17_Chr2g0295401 48.276 319 141 5 95 410 58 355 8.57e-98 298
Msa1458030 MtrunA17_Chr1g0151781 46.226 318 147 5 93 408 33 328 4.88e-87 269
Msa1458030 MtrunA17_Chr4g0066371 31.987 297 140 7 111 387 68 322 6.25e-31 123
Msa1458030 MtrunA17_Chr6g0486661 25.680 331 180 6 111 419 106 392 4.61e-27 114
Msa1458030 MtrunA17_Chr5g0396731 32.117 274 125 9 106 371 80 300 2.60e-25 106
Msa1458030 MtrunA17_Chr2g0286951 30.100 299 146 8 111 389 69 324 3.36e-24 104
Msa1458030 MtrunA17_Chr6g0483411 33.163 196 96 6 232 411 145 321 4.43e-20 90.9
Msa1458030 MtrunA17_Chr2g0317021 37.306 193 79 9 204 384 154 316 4.67e-20 90.9
Msa1458030 MtrunA17_Chr4g0050381 37.778 180 92 9 208 384 98 260 4.33e-18 84.3
Msa1458030 MtrunA17_Chr2g0279151 38.674 181 89 10 208 384 102 264 8.08e-18 83.6
Msa1458030 MtrunA17_Chr1g0150451 30.522 249 136 9 150 384 82 307 9.61e-18 84.3
Msa1458030 MtrunA17_Chr5g0435721 30.303 264 140 8 106 369 200 419 1.31e-17 85.1
Msa1458030 MtrunA17_Chr8g0389921 40.146 137 66 4 232 368 266 386 1.50e-17 84.7
Msa1458030 MtrunA17_Chr3g0135961 30.097 309 143 14 71 368 238 484 2.79e-17 84.3
Msa1458030 MtrunA17_Chr1g0150781 30.242 248 120 10 127 368 288 488 4.33e-17 83.6
Msa1458030 MtrunA17_Chr3g0136711 30.350 257 117 11 131 384 67 264 1.02e-16 80.5
Msa1458030 MtrunA17_Chr3g0115851 39.444 180 89 9 208 384 103 265 2.14e-16 79.3
Msa1458030 MtrunA17_Chr8g0360351 36.364 165 71 7 232 386 126 266 2.69e-16 79.0
Msa1458030 MtrunA17_Chr4g0051661 34.637 179 98 7 211 387 223 384 5.50e-16 79.7
Msa1458030 MtrunA17_Chr1g0212961 27.799 259 122 10 129 385 126 321 5.80e-16 79.0
Msa1458030 MtrunA17_Chr3g0112291 28.679 265 145 8 106 369 100 321 9.85e-16 78.6
Msa1458030 MtrunA17_Chr5g0407161 30.901 233 119 9 168 386 126 330 1.06e-15 78.6
Msa1458030 MtrunA17_Chr4g0070871 30.417 240 120 9 129 368 253 445 1.35e-15 79.0
Msa1458030 MtrunA17_Chr7g0250061 30.180 222 102 9 226 411 149 353 4.73e-15 76.6
Msa1458030 MtrunA17_Chr3g0144111 31.429 175 88 6 201 368 40 189 5.40e-15 74.7
Msa1458030 MtrunA17_Chr3g0105371 29.520 271 144 13 134 397 86 316 1.09e-14 75.1
Msa1458030 MtrunA17_Chr2g0293811 30.603 232 129 8 167 386 105 316 1.20e-14 75.1
Msa1458030 MtrunA17_Chr8g0371321 32.093 215 104 8 242 420 157 365 1.24e-14 75.5
Msa1458030 MtrunA17_Chr3g0126511 28.333 240 110 8 131 368 127 306 1.28e-14 75.1
Msa1458030 MtrunA17_Chr7g0238501 26.688 311 166 11 100 386 238 510 4.05e-14 74.3
Msa1458030 MtrunA17_Chr7g0263281 32.903 155 86 5 245 382 152 305 7.52e-14 72.8
Msa1458030 MtrunA17_Chr1g0171571 29.808 208 123 8 168 369 420 610 8.44e-14 73.6
Msa1458030 MtrunA17_Chr1g0158781 27.778 288 145 10 84 369 104 330 8.79e-14 72.8
Msa1458030 MtrunA17_Chr2g0299981 28.814 236 142 7 129 364 267 476 9.66e-14 73.2
Msa1458030 MtrunA17_Chr5g0430481 27.675 271 133 11 100 368 125 334 9.81e-14 72.4
Msa1458030 MtrunA17_Chr3g0136811 32.903 155 78 4 223 369 151 287 1.62e-13 71.6
Msa1458030 MtrunA17_Chr1g0150071 35.256 156 73 7 223 369 151 287 3.18e-13 70.9
Msa1458030 MtrunA17_Chr1g0194191 27.711 249 122 10 127 369 116 312 3.98e-13 70.9
Msa1458030 MtrunA17_Chr4g0001761 32.903 155 78 4 223 369 151 287 7.00e-13 69.7
Msa1458030 MtrunA17_Chr2g0295991 26.599 297 172 11 122 386 158 440 7.26e-13 70.5
Msa1458030 MtrunA17_Chr4g0039061 26.019 319 176 11 88 386 168 446 1.19e-12 69.7
Msa1458030 MtrunA17_Chr1g0213351 31.515 165 85 4 244 386 160 318 1.89e-12 68.6
Msa1458030 MtrunA17_Chr3g0138281 34.483 145 71 5 231 369 182 308 1.89e-12 68.6
Msa1458030 MtrunA17_Chr4g0067301 28.426 197 103 5 219 386 264 451 2.33e-12 68.9
Msa1458030 MtrunA17_Chr7g0256751 32.727 165 80 8 245 386 151 307 1.64e-11 65.9
Msa1458030 MtrunA17_Chr1g0211251 32.051 156 86 6 245 382 162 315 2.02e-11 65.5
Msa1458030 MtrunA17_Chr1g0192471 28.302 265 158 11 139 388 36 283 2.91e-11 65.1
Msa1458030 MtrunA17_Chr4g0065141 26.482 253 117 8 125 368 120 312 3.39e-11 64.7
Msa1458030 MtrunA17_Chr7g0271971 27.692 260 157 10 143 388 41 283 8.88e-11 63.5
Msa1458030 MtrunA17_Chr1g0175381 29.193 161 91 5 245 386 160 316 9.95e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458030 AT3G02750.2 58.354 401 131 8 42 411 1 396 1.02e-147 430
Msa1458030 AT3G02750.1 58.354 401 131 8 42 411 1 396 1.02e-147 430
Msa1458030 AT1G16220.1 62.080 327 120 3 85 408 51 376 8.05e-144 420
Msa1458030 AT5G36250.1 57.065 368 139 4 84 437 53 415 1.90e-142 415
Msa1458030 AT1G79630.1 50.337 445 185 10 42 451 1 444 3.20e-142 417
Msa1458030 AT1G79630.8 51.395 430 178 9 52 451 12 440 7.81e-142 416
Msa1458030 AT3G02750.3 53.670 436 131 9 42 411 1 431 1.15e-139 411
Msa1458030 AT5G36250.2 54.974 382 139 5 84 437 53 429 2.54e-138 405
Msa1458030 AT1G79630.2 52.316 367 149 7 110 451 9 374 7.00e-125 370
Msa1458030 AT1G79630.7 52.316 367 149 7 110 451 9 374 7.00e-125 370
Msa1458030 AT1G03590.1 53.714 350 148 5 86 430 48 388 4.97e-121 361
Msa1458030 AT4G03415.1 51.149 348 161 5 86 432 55 394 7.37e-116 348
Msa1458030 AT4G03415.3 51.149 348 161 5 86 432 55 394 7.37e-116 348
Msa1458030 AT4G03415.2 51.149 348 161 5 86 432 55 394 7.37e-116 348
Msa1458030 AT5G36250.3 57.491 287 106 2 84 359 53 334 4.21e-113 337
Msa1458030 AT1G79630.6 51.198 334 137 7 143 451 2 334 1.08e-106 322
Msa1458030 AT1G79630.3 51.198 334 137 7 143 451 2 334 1.08e-106 322
Msa1458030 AT1G79630.4 51.198 334 137 7 143 451 2 334 1.08e-106 322
Msa1458030 AT1G79630.5 51.198 334 137 7 143 451 2 334 1.08e-106 322
Msa1458030 AT5G27930.1 48.182 330 140 4 85 407 48 353 6.81e-105 317
Msa1458030 AT5G27930.2 48.182 330 140 4 85 407 48 353 6.81e-105 317
Msa1458030 AT5G01700.2 52.366 317 129 4 94 409 43 338 2.46e-104 315
Msa1458030 AT5G01700.1 52.258 310 126 4 101 409 1 289 1.23e-102 309
Msa1458030 AT3G05640.2 48.113 318 140 4 93 409 57 350 1.82e-100 305
Msa1458030 AT3G05640.1 48.113 318 140 4 93 409 57 350 1.82e-100 305
Msa1458030 AT3G05640.3 48.113 318 140 4 93 409 57 350 1.82e-100 305
Msa1458030 AT3G16800.2 44.937 316 146 4 95 408 59 348 7.54e-86 267
Msa1458030 AT3G16800.1 44.937 316 146 4 95 408 59 348 7.54e-86 267
Msa1458030 AT3G16800.3 44.937 316 146 4 95 408 59 348 7.54e-86 267
Msa1458030 AT5G27930.3 46.763 278 118 3 85 356 48 301 1.75e-85 265
Msa1458030 AT4G32950.1 43.949 314 136 7 98 409 42 317 9.78e-76 240
Msa1458030 AT5G26010.1 42.453 318 150 5 98 413 43 329 4.04e-75 238
Msa1458030 AT3G16800.4 44.326 282 129 4 132 411 1 256 1.30e-72 229
Msa1458030 AT3G16800.6 44.326 282 129 4 132 411 1 256 1.30e-72 229
Msa1458030 AT4G32950.2 41.923 260 112 6 98 356 42 263 3.69e-56 187
Msa1458030 AT3G16800.5 41.176 187 83 3 95 280 59 219 1.70e-36 134
Msa1458030 AT2G20050.1 28.956 297 149 6 111 387 125 379 4.22e-28 118
Msa1458030 AT2G20050.2 28.956 297 149 6 111 387 125 379 4.88e-28 118
Msa1458030 AT3G06270.1 27.609 297 153 6 111 387 70 324 2.49e-23 100
Msa1458030 AT2G20630.1 37.615 218 107 12 184 396 80 273 1.90e-21 94.4
Msa1458030 AT2G20630.2 37.615 218 107 12 184 396 80 273 2.60e-21 94.4
Msa1458030 AT4G28400.3 38.172 186 90 9 204 386 82 245 3.89e-21 93.2
Msa1458030 AT4G28400.1 38.172 186 90 9 204 386 104 267 5.79e-21 93.2
Msa1458030 AT4G31750.1 28.313 332 177 14 123 429 16 311 8.59e-20 90.1
Msa1458030 AT4G31750.3 28.313 332 177 14 123 429 16 311 8.59e-20 90.1
Msa1458030 AT4G31750.2 30.072 276 151 10 123 384 16 263 1.31e-19 89.7
Msa1458030 AT1G72770.4 31.405 242 131 9 129 368 238 446 8.67e-19 89.4
Msa1458030 AT1G72770.1 31.405 242 131 9 129 368 238 446 8.67e-19 89.4
Msa1458030 AT1G72770.3 31.405 242 131 9 129 368 238 446 8.67e-19 89.4
Msa1458030 AT1G07430.1 41.259 143 68 4 227 369 228 354 3.74e-18 87.0
Msa1458030 AT3G11410.1 31.154 260 142 10 106 363 112 336 1.51e-17 84.7
Msa1458030 AT5G10740.1 32.735 223 119 9 168 384 66 263 2.39e-17 83.6
Msa1458030 AT5G10740.2 32.735 223 119 9 168 384 66 263 2.39e-17 83.6
Msa1458030 AT5G59220.1 30.000 270 137 10 106 369 119 342 6.57e-17 82.8
Msa1458030 AT3G15260.2 36.170 188 80 8 209 386 116 273 2.09e-16 79.7
Msa1458030 AT3G15260.1 36.170 188 80 8 209 386 116 273 2.09e-16 79.7
Msa1458030 AT5G53140.1 24.713 348 192 12 102 439 104 391 2.15e-16 81.3
Msa1458030 AT5G53140.2 24.713 348 192 12 102 439 104 391 2.15e-16 81.3
Msa1458030 AT5G24940.1 32.632 190 102 7 199 384 96 263 5.19e-16 80.5
Msa1458030 AT2G25620.1 29.433 282 122 12 106 369 97 319 6.78e-16 79.7
Msa1458030 AT2G25620.2 29.433 282 122 12 106 369 97 319 6.78e-16 79.7
Msa1458030 AT3G51470.2 30.332 211 110 7 168 369 64 246 4.01e-15 76.6
Msa1458030 AT1G07160.1 29.661 236 144 8 134 368 121 335 5.60e-15 76.6
Msa1458030 AT3G51470.1 30.332 211 110 7 168 369 108 290 7.15e-15 76.3
Msa1458030 AT2G34740.1 35.032 157 85 7 232 386 178 319 9.94e-15 75.5
Msa1458030 AT2G33700.1 34.706 170 83 6 204 368 160 306 1.06e-14 75.9
Msa1458030 AT3G62260.3 30.279 251 114 9 127 369 25 222 2.04e-14 73.9
Msa1458030 AT3G17250.1 28.346 254 124 10 129 374 158 361 2.40e-14 75.1
Msa1458030 AT3G62260.2 30.279 251 114 9 127 369 115 312 2.46e-14 74.7
Msa1458030 AT3G62260.1 30.279 251 114 9 127 369 114 311 2.63e-14 74.7
Msa1458030 AT5G51760.2 39.568 139 66 5 231 368 200 321 3.27e-14 74.3
Msa1458030 AT5G51760.1 39.568 139 66 5 231 368 230 351 4.08e-14 74.3
Msa1458030 AT1G22280.3 36.813 182 95 10 206 384 106 270 4.44e-14 73.2
Msa1458030 AT3G16560.3 27.723 303 156 12 122 386 167 444 4.48e-14 74.3
Msa1458030 AT1G22280.1 36.813 182 95 10 206 384 100 264 4.54e-14 72.8
Msa1458030 AT5G57050.1 29.167 240 122 7 129 368 160 351 4.95e-14 74.3
Msa1458030 AT1G43900.1 28.571 301 150 12 88 383 110 350 5.01e-14 73.9
Msa1458030 AT3G16560.1 27.723 303 156 12 122 386 167 444 5.09e-14 74.3
Msa1458030 AT3G16560.4 27.723 303 156 12 122 386 167 444 5.09e-14 74.3
Msa1458030 AT3G16560.2 27.723 303 156 12 122 386 167 444 5.09e-14 74.3
Msa1458030 AT2G30020.1 26.022 269 142 7 100 368 141 352 5.52e-14 73.9
Msa1458030 AT1G48040.1 33.673 196 97 6 205 387 161 336 5.79e-14 73.6
Msa1458030 AT5G57050.2 29.167 240 122 7 129 368 120 311 6.51e-14 73.6
Msa1458030 AT2G40180.1 27.941 272 139 10 100 369 130 346 1.67e-13 72.4
Msa1458030 AT1G78200.5 33.333 183 103 7 206 384 54 221 1.72e-13 70.5
Msa1458030 AT1G78200.4 33.333 183 103 7 206 384 54 221 1.72e-13 70.5
Msa1458030 AT1G78200.1 33.333 183 103 7 206 384 99 266 1.93e-13 70.9
Msa1458030 AT1G78200.3 33.333 183 103 7 206 384 99 266 1.93e-13 70.9
Msa1458030 AT1G78200.2 33.333 183 103 7 206 384 99 266 1.93e-13 70.9
Msa1458030 AT1G67820.2 26.966 267 135 9 104 369 90 297 1.98e-13 72.4
Msa1458030 AT1G18030.1 29.897 194 101 7 232 409 175 349 2.89e-13 71.2
Msa1458030 AT1G34750.2 34.615 182 99 9 206 384 101 265 3.22e-13 70.5
Msa1458030 AT1G34750.1 34.615 182 99 9 206 384 101 265 3.22e-13 70.5
Msa1458030 AT1G34750.3 34.615 182 99 9 206 384 101 265 3.22e-13 70.5
Msa1458030 AT1G67820.1 26.966 267 135 9 104 369 126 333 3.25e-13 71.6
Msa1458030 AT3G12620.2 31.250 208 108 10 236 411 156 360 3.94e-13 71.2
Msa1458030 AT3G12620.1 31.250 208 108 10 236 411 156 360 3.94e-13 71.2
Msa1458030 AT5G02760.1 36.184 152 77 6 245 379 153 301 5.36e-13 70.5
Msa1458030 AT2G29380.1 28.996 269 141 12 106 368 85 309 6.35e-13 70.5
Msa1458030 AT3G51370.2 29.648 199 106 7 245 411 75 271 8.66e-13 69.3
Msa1458030 AT5G66080.2 30.000 200 104 6 245 411 59 255 9.78e-13 68.9
Msa1458030 AT3G51370.1 29.648 199 106 7 245 411 160 356 1.26e-12 69.7
Msa1458030 AT3G51370.3 29.648 199 106 7 245 411 160 356 1.26e-12 69.7
Msa1458030 AT3G55050.1 32.544 169 93 7 236 386 157 322 1.40e-12 69.3
Msa1458030 AT3G55050.2 32.544 169 93 7 236 386 157 322 1.40e-12 69.3
Msa1458030 AT2G40860.2 30.000 190 111 5 204 385 458 633 1.68e-12 70.1
Msa1458030 AT2G40860.1 30.000 190 111 5 204 385 458 633 1.86e-12 69.7
Msa1458030 AT2G40860.4 30.000 190 111 5 204 385 360 535 1.96e-12 69.7
Msa1458030 AT5G66080.1 30.000 200 104 6 245 411 163 359 2.03e-12 68.9
Msa1458030 AT1G17550.1 29.661 236 136 9 129 364 237 442 2.83e-12 68.9
Msa1458030 AT1G17550.2 29.661 236 136 9 129 364 237 442 2.83e-12 68.9
Msa1458030 AT4G31860.1 30.323 155 82 4 223 369 151 287 5.82e-12 67.4
Msa1458030 AT4G31860.3 30.323 155 82 4 223 369 151 287 5.85e-12 66.6
Msa1458030 AT1G09160.2 34.756 164 86 8 231 386 131 281 1.02e-11 67.0
Msa1458030 AT1G09160.1 34.756 164 86 8 231 386 131 281 1.02e-11 67.0
Msa1458030 AT3G17090.1 26.396 197 114 6 245 411 166 361 1.81e-11 65.9
Msa1458030 AT5G06750.2 31.707 164 87 5 245 386 81 241 7.31e-11 63.5
Msa1458030 AT5G06750.3 31.707 164 87 6 245 386 163 323 8.15e-11 63.9
Msa1458030 AT5G06750.1 31.707 164 87 6 245 386 163 323 8.15e-11 63.9

Find 155 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATCTTAATGTCTAAAT+TGG 0.132930 tig0039356:+11345 None:intergenic
CATTGTGCACTAAGCTTTAA+AGG 0.182238 tig0039356:+14205 None:intergenic
TGGGAAGAGAAGGAGGTTAA+AGG 0.204772 tig0039356:-15253 Msa1458030:CDS
CTGGCTATGGCACGGGCTTT+TGG 0.207991 tig0039356:-13074 Msa1458030:CDS
TCAACTCTGTATTTGAATTA+AGG 0.217387 tig0039356:+11856 None:intergenic
TTGAGTCAGCTGTTCTTTCT+TGG 0.253023 tig0039356:-11932 Msa1458030:CDS
CTGAACATTGTGAGAGCTTT+GGG 0.255733 tig0039356:-15363 Msa1458030:CDS
TTTGAAGGCTAGCAAGATTA+TGG 0.259201 tig0039356:-14032 Msa1458030:CDS
AAAATTGGAGTTATTGGTTA+TGG 0.267026 tig0039356:-11316 Msa1458030:three_prime_UTR
CTTCTCTGTATAGGTTGATT+TGG 0.283500 tig0039356:-11471 Msa1458030:three_prime_UTR
TTCTTCTACCATGGATTATA+AGG 0.286247 tig0039356:-15229 Msa1458030:CDS
GTATTGCAGGCAAGGTAAAA+AGG 0.288468 tig0039356:-15160 Msa1458030:CDS
CCACATCTGGTTCATTCTTA+AGG 0.290859 tig0039356:+13132 None:intergenic
ACCAAGATGCTATGCTTGTT+TGG 0.296521 tig0039356:-15131 Msa1458030:CDS
TTTGATGGTCATGGACCTTA+TGG 0.316111 tig0039356:-14262 Msa1458030:CDS
GTCTACTGCTGCTAGATTAC+TGG 0.321098 tig0039356:-11955 Msa1458030:CDS
GCATTTGATGGGTGGGGTAT+TGG 0.330712 tig0039356:-11568 Msa1458030:three_prime_UTR
GAATCGATATGGAACGGATT+TGG 0.339552 tig0039356:-15439 Msa1458030:CDS
ATAAATAATGAAAAGAATAT+TGG 0.342514 tig0039356:+11609 None:intergenic
ATAGGGTTGCAAAGAAAGTT+AGG 0.347280 tig0039356:-14237 Msa1458030:CDS
TTTCCTTGGACAGCATTTGA+TGG 0.348769 tig0039356:-11580 Msa1458030:three_prime_UTR
TACTTGGAAGATTAGGCTTA+AGG 0.350076 tig0039356:+13742 None:intergenic
AAATCAAGGAATCGAAAATC+TGG 0.355931 tig0039356:+16049 None:intergenic
CACATCTGGTTCATTCTTAA+GGG 0.356003 tig0039356:+13133 None:intergenic
CGGATTTGGTTGGAGAAGGG+AGG 0.358073 tig0039356:-15425 Msa1458030:CDS
CTACCTAGTGAGAATGGAAT+TGG 0.360090 tig0039356:-11765 Msa1458030:CDS
TCTGAACATTGTGAGAGCTT+TGG 0.363138 tig0039356:-15364 Msa1458030:CDS
CCAAGATGCTATGCTTGTTT+GGG 0.385024 tig0039356:-15130 Msa1458030:CDS
GATGGAGTCAATGATCAAAA+TGG 0.388111 tig0039356:-14160 Msa1458030:CDS
AATCTTGCTAGCCTTCAAAT+AGG 0.388665 tig0039356:+14036 None:intergenic
AGATTGCTTCTATGTATTGC+AGG 0.393864 tig0039356:-15173 Msa1458030:CDS
GTTAAAGGGTTCTTCTACCA+TGG 0.401337 tig0039356:-15238 Msa1458030:CDS
TTGTCTTTGAAGTAGATAGT+AGG 0.402987 tig0039356:-11124 Msa1458030:three_prime_UTR
AGAGATGATTGATCAACAAC+TGG 0.404278 tig0039356:+11786 None:intergenic
ATGTATATACTTGGAAGATT+AGG 0.412084 tig0039356:+13735 None:intergenic
AAATCAATCCAACATCCTTT+AGG 0.413241 tig0039356:+13042 None:intergenic
TAGGGGCTGGACCTTGTCAT+TGG 0.415147 tig0039356:-13843 Msa1458030:CDS
AAAAGGCTTGGGAAGAGATA+TGG 0.418296 tig0039356:+11701 None:intergenic
TAACTCTGATTTCCCAGGTC+TGG 0.419673 tig0039356:-13093 Msa1458030:CDS
AGCCAAACCCGAGCCACATC+TGG 0.420808 tig0039356:+13119 None:intergenic
AGAATTAAATTGTGAAATCA+AGG 0.423532 tig0039356:+16035 None:intergenic
ACAGAGGTTGGTGGTGGTGC+TGG 0.431168 tig0039356:-15324 Msa1458030:CDS
AACCAGATGTGGCTCGGGTT+TGG 0.437527 tig0039356:-13121 Msa1458030:CDS
TTTGATGGGTGGGGTATTGG+AGG 0.438372 tig0039356:-11565 Msa1458030:three_prime_UTR
CGATGGAGCAAATACTATCT+TGG 0.439772 tig0039356:-14071 Msa1458030:CDS
ATTGTGCACTAAGCTTTAAA+GGG 0.440654 tig0039356:+14206 None:intergenic
GTCACGAGTGGTTGCGTCAC+AGG 0.441357 tig0039356:+16117 None:intergenic
TTCCTTGGACAGCATTTGAT+GGG 0.441794 tig0039356:-11579 Msa1458030:three_prime_UTR
TTTGCAACCCTATGGCCATA+AGG 0.445351 tig0039356:+14247 None:intergenic
TTTAAAGCTTAGTGCACAAT+GGG 0.445439 tig0039356:-14203 Msa1458030:CDS
ATTGTGAGAGCTTTGGGAAT+GGG 0.447240 tig0039356:-15357 Msa1458030:CDS
AGAAGGGAGGGGATCAGATT+CGG 0.447482 tig0039356:-15412 Msa1458030:CDS
ACTGGGTCTGTTGATGCATC+TGG 0.450576 tig0039356:+11804 None:intergenic
TTGGACAGCATTTGATGGGT+GGG 0.453307 tig0039356:-11575 Msa1458030:three_prime_UTR
CCCAGGTCTGGCTATGGCAC+GGG 0.454695 tig0039356:-13081 Msa1458030:CDS
TAACTTTCTTTGCAACCCTA+TGG 0.454759 tig0039356:+14239 None:intergenic
CCTGGGAGAATGTTCTTGAA+TGG 0.460019 tig0039356:-15204 Msa1458030:CDS
CTTGGACAGCATTTGATGGG+TGG 0.461442 tig0039356:-11576 Msa1458030:three_prime_UTR
GGGGATTCTAGAGCTGTATT+GGG 0.466077 tig0039356:-13813 Msa1458030:CDS
TAAGAGAATCCTCGTGATCT+CGG 0.467300 tig0039356:+13787 None:intergenic
GTTGCTTACCTGCTTGATCA+AGG 0.469706 tig0039356:+13949 None:intergenic
ATCCGGAGGAAAAGGGGTAC+CGG 0.470995 tig0039356:-11523 Msa1458030:three_prime_UTR
CCCAAACAAGCATAGCATCT+TGG 0.472982 tig0039356:+15130 None:intergenic
TCAGATTCGGAGTGTTTAGC+TGG 0.473304 tig0039356:-15399 Msa1458030:CDS
AGGCGGTGATATGAGACATC+TGG 0.474698 tig0039356:+13014 None:intergenic
TACACATTATATAGTTTGTC+CGG 0.476947 tig0039356:-11422 Msa1458030:three_prime_UTR
AGACCTGGGAAATCAGAGTT+AGG 0.478906 tig0039356:+13095 None:intergenic
GGAACGGATTTGGTTGGAGA+AGG 0.480128 tig0039356:-15429 Msa1458030:CDS
TCATCTCTACCTAGTGAGAA+TGG 0.480153 tig0039356:-11771 Msa1458030:CDS
CAAATTCATCCTTCTCTGTA+AGG 0.481540 tig0039356:+12994 None:intergenic
GGACCTTGTCATTGGAAATG+TGG 0.482196 tig0039356:-13835 Msa1458030:CDS
GGGAAGAGAAGGAGGTTAAA+GGG 0.484227 tig0039356:-15252 Msa1458030:CDS
TCGCAGGAATTGAACGTTGA+CGG 0.485879 tig0039356:-15276 Msa1458030:CDS
CAATCATCAATCTTACAGTA+AGG 0.486586 tig0039356:+11897 None:intergenic
CTGCCTAACTCTGATTTCCC+AGG 0.491210 tig0039356:-13098 Msa1458030:CDS
GAACGGATTTGGTTGGAGAA+GGG 0.492334 tig0039356:-15428 Msa1458030:CDS
CGATATGGAACGGATTTGGT+TGG 0.493543 tig0039356:-15435 Msa1458030:CDS
CTGGGAGAATGTTCTTGAAT+GGG 0.494177 tig0039356:-15203 Msa1458030:CDS
CGAAGAAGTTGTGGAGATTG+TGG 0.494222 tig0039356:-11991 Msa1458030:CDS
GACCTTGTCATTGGAAATGT+GGG 0.496004 tig0039356:-13834 Msa1458030:CDS
TGATTTCCCAGGTCTGGCTA+TGG 0.496031 tig0039356:-13087 Msa1458030:CDS
GCCCGTGCCATAGCCAGACC+TGG 0.499142 tig0039356:+13080 None:intergenic
TTGCATCGTAAGAATAAAGA+TGG 0.500267 tig0039356:-14178 Msa1458030:CDS
ACTAAGAGAATCCTATTTGA+AGG 0.501057 tig0039356:-14047 Msa1458030:CDS
TCCCAGGTCTGGCTATGGCA+CGG 0.506350 tig0039356:-13082 Msa1458030:CDS
TGGACAGCATTTGATGGGTG+GGG 0.512967 tig0039356:-11574 Msa1458030:three_prime_UTR
GAATGAACCAGATGTGGCTC+GGG 0.516219 tig0039356:-13126 Msa1458030:CDS
GTTGCGTCACAGGCAGGTGG+TGG 0.517664 tig0039356:+16127 None:intergenic
AAGAGAATCCTCGTGATCTC+GGG 0.518359 tig0039356:+13788 None:intergenic
CCCAGGTACCTTATAATCCA+TGG 0.518689 tig0039356:+15221 None:intergenic
TTTATCAAACGAAGAAGTTG+TGG 0.520290 tig0039356:-12000 Msa1458030:CDS
ACCATGGATTATAAGGTACC+TGG 0.524514 tig0039356:-15222 Msa1458030:CDS
TCCGGAGGAAAAGGGGTACC+GGG 0.529297 tig0039356:-11522 Msa1458030:three_prime_UTR
AGATGCTATGCTTGTTTGGG+AGG 0.530358 tig0039356:-15127 Msa1458030:intron
TAGGGTTGCAAAGAAAGTTA+GGG 0.535573 tig0039356:-14236 Msa1458030:CDS
GCTTCTATGTATTGCAGGCA+AGG 0.535775 tig0039356:-15168 Msa1458030:CDS
CTCTTCAGAATTATAACTTG+TGG 0.536276 tig0039356:+14132 None:intergenic
GGATTTGGTTGGAGAAGGGA+GGG 0.538389 tig0039356:-15424 Msa1458030:CDS
GCGTGAATCCAAAATCAAAT+CGG 0.539683 tig0039356:+15967 None:intergenic
CATTGTGAGAGCTTTGGGAA+TGG 0.542339 tig0039356:-15358 Msa1458030:CDS
GTCTCTGCTAACTTATTCGC+AGG 0.543314 tig0039356:-15292 Msa1458030:CDS
AGAATGAACCAGATGTGGCT+CGG 0.546848 tig0039356:-13127 Msa1458030:CDS
TTGTTGTGTTAGCAACAGAT+GGG 0.547286 tig0039356:-12974 Msa1458030:CDS
GAGGTTGGTGGTGGTGCTGG+TGG 0.548138 tig0039356:-15321 Msa1458030:CDS
GAGAGGATCAGACATCGTAA+AGG 0.555695 tig0039356:-13167 Msa1458030:CDS
GTCATGGACCTTATGGCCAT+AGG 0.558177 tig0039356:-14255 Msa1458030:CDS
TCATGGACCTTATGGCCATA+GGG 0.559275 tig0039356:-14254 Msa1458030:CDS
GGATCTTGTATAACAGAGGT+TGG 0.559776 tig0039356:-15336 Msa1458030:CDS
CTGTATTTGAATTAAGGAAG+AGG 0.560437 tig0039356:+11862 None:intergenic
TTTGTTGTGTTAGCAACAGA+TGG 0.562594 tig0039356:-12975 Msa1458030:CDS
AGCAGTTACCTTGATCAAGC+AGG 0.564057 tig0039356:-13957 Msa1458030:intron
CTTTAAAGCTTAGTGCACAA+TGG 0.567498 tig0039356:-14204 Msa1458030:CDS
GGATCAGACATCGTAAAGGA+AGG 0.567716 tig0039356:-13163 Msa1458030:CDS
ATATCACCGCCTTACAGAGA+AGG 0.568434 tig0039356:-13003 Msa1458030:CDS
ACGTTGACGGTGGGAAGAGA+AGG 0.569685 tig0039356:-15263 Msa1458030:CDS
AACAACAATCATCATGACTC+AGG 0.570815 tig0039356:-15867 Msa1458030:intron
AACATTGATCATGAGCTCGA+TGG 0.572230 tig0039356:-14088 Msa1458030:CDS
CAGGAATTGAACGTTGACGG+TGG 0.572937 tig0039356:-15273 Msa1458030:CDS
GATTTGGTTGGAGAAGGGAG+GGG 0.573701 tig0039356:-15423 Msa1458030:CDS
ACTCCAATTCCATTCTCACT+AGG 0.575682 tig0039356:+11762 None:intergenic
GAATTGTTGTTGTGGTTGAG+AGG 0.576501 tig0039356:+16078 None:intergenic
CCTTAAGAATGAACCAGATG+TGG 0.586414 tig0039356:-13132 Msa1458030:CDS
CATGATTATTGTAATACCGT+GGG 0.593882 tig0039356:-11218 Msa1458030:three_prime_UTR
CACCCATCAAATGCTGTCCA+AGG 0.594908 tig0039356:+11577 None:intergenic
AATCATCAATCTTACAGTAA+GGG 0.595112 tig0039356:+11898 None:intergenic
CAAATCAACCTATACAGAGA+AGG 0.595309 tig0039356:+11472 None:intergenic
ATAATGTGTATCTAGAGACT+TGG 0.599911 tig0039356:+11435 None:intergenic
GGAATGAAGAATTGTTGTTG+TGG 0.600646 tig0039356:+16070 None:intergenic
TCATGATTATTGTAATACCG+TGG 0.603289 tig0039356:-11219 Msa1458030:three_prime_UTR
ATCTGGTGTCAGCTTGTCTG+TGG 0.603547 tig0039356:+11821 None:intergenic
CCATGGATTATAAGGTACCT+GGG 0.604671 tig0039356:-15221 Msa1458030:CDS
ATGACAGTTCAGAAAATCAC+CGG 0.609103 tig0039356:+11403 None:intergenic
TTCATTCATTTATATAGACA+CGG 0.611607 tig0039356:+16225 None:intergenic
ATTTCACAGAGGAAGAAGAG+AGG 0.611881 tig0039356:-13184 Msa1458030:intron
AGGAATTGAACGTTGACGGT+GGG 0.613550 tig0039356:-15272 Msa1458030:CDS
TAGTGAGAATGGAATTGGAG+TGG 0.616716 tig0039356:-11760 Msa1458030:CDS
GTTGTGGTTGAGAGGAGAAG+CGG 0.619127 tig0039356:+16086 None:intergenic
CCTTGTCATTGGAAATGTGG+GGG 0.625699 tig0039356:-13832 Msa1458030:CDS
GTGGTTGCGTCACAGGCAGG+TGG 0.635333 tig0039356:+16124 None:intergenic
GATCAGACATCGTAAAGGAA+GGG 0.640592 tig0039356:-13162 Msa1458030:CDS
TGTGACGCAACCACTCGTGA+CGG 0.642154 tig0039356:-16115 Msa1458030:five_prime_UTR
TGTTGTGTTAGCAACAGATG+GGG 0.643650 tig0039356:-12973 Msa1458030:intron
CCCGTGCCATAGCCAGACCT+GGG 0.644006 tig0039356:+13081 None:intergenic
TCTTGTATAACAGAGGTTGG+TGG 0.645707 tig0039356:-15333 Msa1458030:CDS
CCATTCAAGAACATTCTCCC+AGG 0.646560 tig0039356:+15204 None:intergenic
TGTATAACAGAGGTTGGTGG+TGG 0.648597 tig0039356:-15330 Msa1458030:CDS
TTGACGGTGGGAAGAGAAGG+AGG 0.652215 tig0039356:-15260 Msa1458030:CDS
ATTGGGAACCCGAGATCACG+AGG 0.666845 tig0039356:-13796 Msa1458030:CDS
AATGGGATCTTGTATAACAG+AGG 0.673381 tig0039356:-15340 Msa1458030:CDS
GAGATGATTGATCAACAACT+GGG 0.687400 tig0039356:+11787 None:intergenic
ATTCATCCTTCTCTGTAAGG+CGG 0.688558 tig0039356:+12997 None:intergenic
ACCTTGTCATTGGAAATGTG+GGG 0.692727 tig0039356:-13833 Msa1458030:CDS
TAAGATTGATGATTGTGCTG+CGG 0.726918 tig0039356:-11889 Msa1458030:CDS
AGATTGTGGCATCTGCACCG+CGG 0.775815 tig0039356:-11977 Msa1458030:CDS
AATCTAGCAGCAGTAGACCG+CGG 0.778903 tig0039356:+11960 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTATATTTATTT+TGG - tig0039356:11139-11158 Msa1458030:three_prime_UTR 0.0%
!!! TTTATATTTATATTTATTTT+GGG - tig0039356:11140-11159 Msa1458030:three_prime_UTR 0.0%
!!! GTTTTTTTTTTTTTTTGAAA+TGG - tig0039356:11566-11585 Msa1458030:three_prime_UTR 10.0%
!!! AAAATTTCTTTTAACTAAAA+AGG + tig0039356:14869-14888 None:intergenic 10.0%
!!! TAAAAGAAATTTTTATTAGA+AGG - tig0039356:14876-14895 Msa1458030:intron 10.0%
!!! AAAAGAAATTTTTATTAGAA+GGG - tig0039356:14877-14896 Msa1458030:intron 10.0%
!! ATAAATAATGAAAAGAATAT+TGG + tig0039356:15718-15737 None:intergenic 10.0%
!!! ATATTTATATTTATTTTGGG+TGG - tig0039356:11143-11162 Msa1458030:three_prime_UTR 15.0%
!! TATGATTATGATTATGATTA+TGG - tig0039356:11656-11675 Msa1458030:three_prime_UTR 15.0%
!! TAATATATGCTAAAAGATAA+TGG + tig0039356:12229-12248 None:intergenic 15.0%
!!! ATTATTTTTAAACTCGTATA+TGG + tig0039356:13874-13893 None:intergenic 15.0%
!! ATATACGAGTTTAAAAATAA+TGG - tig0039356:13873-13892 Msa1458030:intron 15.0%
!!! TGTTTAACTTTATTTACTTT+TGG - tig0039356:13975-13994 Msa1458030:CDS 15.0%
!!! ACAGTTTCTTTTAATTAAAA+GGG + tig0039356:14698-14717 None:intergenic 15.0%
!!! TACAGTTTCTTTTAATTAAA+AGG + tig0039356:14699-14718 None:intergenic 15.0%
!! AAAAATAATCAAATATTTCG+AGG + tig0039356:14753-14772 None:intergenic 15.0%
!! ATATACTAATACAGTATATT+TGG + tig0039356:15021-15040 None:intergenic 15.0%
!! AAATATACTGTATTAGTATA+TGG - tig0039356:15020-15039 Msa1458030:intron 15.0%
!! AATTCAAATATTTAATAGCA+CGG + tig0039356:15262-15281 None:intergenic 15.0%
!!! CTTTTTTTATTTAGAAGTTT+GGG - tig0039356:15641-15660 Msa1458030:intron 15.0%
!! AGAATTAAATTGTGAAATCA+AGG + tig0039356:11292-11311 None:intergenic 20.0%
!! TATAATTATGTTACTGTTGA+TGG - tig0039356:11593-11612 Msa1458030:three_prime_UTR 20.0%
!! AAAAGAGAAAACTACAAAAA+TGG + tig0039356:12640-12659 None:intergenic 20.0%
!! ACAAGAGTTAAATTAAATGA+GGG + tig0039356:12963-12982 None:intergenic 20.0%
!! AACAAGAGTTAAATTAAATG+AGG + tig0039356:12964-12983 None:intergenic 20.0%
!! TAATTATTTGCTCAAAACTA+AGG - tig0039356:12983-13002 Msa1458030:CDS 20.0%
!! AACATAGTGTAAAACAAATA+AGG + tig0039356:13442-13461 None:intergenic 20.0%
!! TTACATTTGATAAGTTATGT+TGG - tig0039356:13847-13866 Msa1458030:intron 20.0%
!! AATGTATTAAATAGTTGTGT+TGG - tig0039356:13926-13945 Msa1458030:intron 20.0%
!!! TTTTAATAAATGCTGTAACT+TGG - tig0039356:14047-14066 Msa1458030:CDS 20.0%
!! TATGTAGAAATAACCAAATA+TGG - tig0039356:14443-14462 Msa1458030:intron 20.0%
!!! TGATTATTTTCTCACATAAT+TGG - tig0039356:14590-14609 Msa1458030:intron 20.0%
!! TAATACAGTATATTTGGTTA+AGG + tig0039356:15015-15034 None:intergenic 20.0%
!!! ATTGTAAAGTCTTTTTTTGT+GGG - tig0039356:15081-15100 Msa1458030:intron 20.0%
!! TGTGAATAATTAGATATAGA+GGG - tig0039356:15162-15181 Msa1458030:CDS 20.0%
!! TTCTAAATAAAAAAAGGCTT+GGG + tig0039356:15637-15656 None:intergenic 20.0%
!! CCAAACTTCTAAATAAAAAA+AGG + tig0039356:15643-15662 None:intergenic 20.0%
!!! CCTTTTTTTATTTAGAAGTT+TGG - tig0039356:15640-15659 Msa1458030:intron 20.0%
!!! TTATTTATCTTTCTTTTCCT+TGG - tig0039356:15730-15749 Msa1458030:intron 20.0%
!! TTCTATCTTAATGTCTAAAT+TGG + tig0039356:15982-16001 None:intergenic 20.0%
! TCTACAAAAAAAAAAAACGC+TGG - tig0039356:11309-11328 Msa1458030:three_prime_UTR 25.0%
!! ATAGATTATGATGATGATGA+TGG - tig0039356:11833-11852 Msa1458030:CDS 25.0%
! GTTTGGATAACTAACAATTA+TGG - tig0039356:12379-12398 Msa1458030:intron 25.0%
! AAAGTTTATTTCGACTTACA+TGG + tig0039356:12604-12623 None:intergenic 25.0%
!! TAAAAGTGTACACATATTCA+TGG + tig0039356:12670-12689 None:intergenic 25.0%
!!! GTGTACACTTTTATTTTATC+TGG - tig0039356:12677-12696 Msa1458030:intron 25.0%
! CTAGAATATAAACCACAAAT+AGG + tig0039356:12716-12735 None:intergenic 25.0%
!!! TGAAAAATGTCGATTCTTTT+TGG - tig0039356:12795-12814 Msa1458030:intron 25.0%
!!! TCTTTTTGGCTTTTGAATTT+AGG - tig0039356:12809-12828 Msa1458030:intron 25.0%
!!! CTTTTTGGCTTTTGAATTTA+GGG - tig0039356:12810-12829 Msa1458030:intron 25.0%
!! CTTTTGCTTATAAATCATTC+TGG + tig0039356:12861-12880 None:intergenic 25.0%
! ATATTTCATTCCAAGATAGA+TGG + tig0039356:12888-12907 None:intergenic 25.0%
! TAGAGATAGTAGCAATAAAA+AGG + tig0039356:12934-12953 None:intergenic 25.0%
! CAAGAGTTAAATTAAATGAG+GGG + tig0039356:12962-12981 None:intergenic 25.0%
! AAAGTTCTGTATACACAAAA+TGG + tig0039356:13009-13028 None:intergenic 25.0%
!! TATACAGAACTTTTGTTCAA+AGG - tig0039356:13016-13035 Msa1458030:CDS 25.0%
! ATCAAAAACACCACAAAAAA+CGG + tig0039356:13048-13067 None:intergenic 25.0%
! ATGTATATACTTGGAAGATT+AGG + tig0039356:13592-13611 None:intergenic 25.0%
! TCTTGCAATATATAGATAGA+TGG + tig0039356:13766-13785 None:intergenic 25.0%
! ACTTATGACTTATCATTCAT+AGG - tig0039356:13896-13915 Msa1458030:intron 25.0%
! AATCAAGTTTGAACCATATT+TGG + tig0039356:14459-14478 None:intergenic 25.0%
! AAATATGGTTCAAACTTGAT+TGG - tig0039356:14458-14477 Msa1458030:intron 25.0%
! TAATATTCCACAATCAAGTT+AGG + tig0039356:14631-14650 None:intergenic 25.0%
! TATTACAATTTACTGAACCT+TGG - tig0039356:14914-14933 Msa1458030:intron 25.0%
! CACAAAAAAAGACTTTACAA+TGG + tig0039356:15082-15101 None:intergenic 25.0%
!!! CATTGTAAAGTCTTTTTTTG+TGG - tig0039356:15080-15099 Msa1458030:intron 25.0%
!!! TTGTAAAGTCTTTTTTTGTG+GGG - tig0039356:15082-15101 Msa1458030:intron 25.0%
! TGTGTAAAAAGAAAACTCTT+AGG - tig0039356:15109-15128 Msa1458030:intron 25.0%
! GTGTAAAAAGAAAACTCTTA+GGG - tig0039356:15110-15129 Msa1458030:intron 25.0%
! TGTAAAAAGAAAACTCTTAG+GGG - tig0039356:15111-15130 Msa1458030:intron 25.0%
! GTGTGAATAATTAGATATAG+AGG - tig0039356:15161-15180 Msa1458030:CDS 25.0%
! AATTGTTCTATGTTTGCAAT+TGG + tig0039356:15191-15210 None:intergenic 25.0%
! AATCATCAATCTTACAGTAA+GGG + tig0039356:15429-15448 None:intergenic 25.0%
! TCAACTCTGTATTTGAATTA+AGG + tig0039356:15471-15490 None:intergenic 25.0%
! CTTCTAAATAAAAAAAGGCT+TGG + tig0039356:15638-15657 None:intergenic 25.0%
!! TTCAATATATGTTTTGCATC+CGG - tig0039356:15784-15803 Msa1458030:intron 25.0%
!! TACACATTATATAGTTTGTC+CGG - tig0039356:15902-15921 Msa1458030:five_prime_UTR 25.0%
! AAGATAGAACTTGCAAAAAT+TGG - tig0039356:15993-16012 Msa1458030:five_prime_UTR 25.0%
!! AAAATTGGAGTTATTGGTTA+TGG - tig0039356:16008-16027 Msa1458030:five_prime_UTR 25.0%
AAATCAAGGAATCGAAAATC+TGG + tig0039356:11278-11297 None:intergenic 30.0%
CCAAAATCAAATCGGAAAAA+AGG + tig0039356:11352-11371 None:intergenic 30.0%
!!! CCTTTTTTCCGATTTGATTT+TGG - tig0039356:11349-11368 Msa1458030:three_prime_UTR 30.0%
GACACAGACAAACAAAAATT+TGG + tig0039356:11792-11811 None:intergenic 30.0%
!!! AGTTTTGAATCGATATGGAA+CGG - tig0039356:11879-11898 Msa1458030:CDS 30.0%
! TTCTTCTACCATGGATTATA+AGG - tig0039356:12095-12114 Msa1458030:intron 30.0%
! ACATGGTTAGTTGGAAAAAT+TGG + tig0039356:12339-12358 None:intergenic 30.0%
! ATTTTTCCAACTAACCATGT+TGG - tig0039356:12339-12358 Msa1458030:intron 30.0%
TCTATGTCTATGAGTAAGTT+TGG - tig0039356:12362-12381 Msa1458030:intron 30.0%
!!! TGCCTTGTTTTTTCCTAAAA+TGG - tig0039356:12500-12519 Msa1458030:intron 30.0%
!!! GCCTTGTTTTTTCCTAAAAT+GGG - tig0039356:12501-12520 Msa1458030:intron 30.0%
!! ACCCATTTTAGGAAAAAACA+AGG + tig0039356:12505-12524 None:intergenic 30.0%
! ATCCAAATTTTGCCTATTTG+TGG - tig0039356:12701-12720 Msa1458030:intron 30.0%
AACCACAAATAGGCAAAATT+TGG + tig0039356:12706-12725 None:intergenic 30.0%
! AAGCGAAAGTGAAAACTTTT+TGG - tig0039356:12908-12927 Msa1458030:intron 30.0%
!!! GTTTTTTGTGGTGTTTTTGA+TGG - tig0039356:13047-13066 Msa1458030:CDS 30.0%
!! ATTGTGCACTAAGCTTTAAA+GGG + tig0039356:13121-13140 None:intergenic 30.0%
! TTTAAAGCTTAGTGCACAAT+GGG - tig0039356:13121-13140 Msa1458030:CDS 30.0%
TTGCATCGTAAGAATAAAGA+TGG - tig0039356:13146-13165 Msa1458030:CDS 30.0%
CTCTTCAGAATTATAACTTG+TGG + tig0039356:13195-13214 None:intergenic 30.0%
ACTAAGAGAATCCTATTTGA+AGG - tig0039356:13277-13296 Msa1458030:intron 30.0%
!! ATATTGATTGCTTTTGCAGT+GGG - tig0039356:13339-13358 Msa1458030:intron 30.0%
! TCTACTCCTTATGTTCTTTT+AGG - tig0039356:13462-13481 Msa1458030:intron 30.0%
! CTACTCCTTATGTTCTTTTA+GGG - tig0039356:13463-13482 Msa1458030:intron 30.0%
! TACTCCTTATGTTCTTTTAG+GGG - tig0039356:13464-13483 Msa1458030:intron 30.0%
TTTCCATACTTCAATCAGAT+TGG - tig0039356:14076-14095 Msa1458030:CDS 30.0%
! ATTTGCACTTTATTTCACAG+AGG - tig0039356:14129-14148 Msa1458030:CDS 30.0%
!! TTTTGGAGATTTTTGCCTAA+AGG - tig0039356:14267-14286 Msa1458030:CDS 30.0%
AAATCAATCCAACATCCTTT+AGG + tig0039356:14285-14304 None:intergenic 30.0%
!! GGTTATTTCTACATACTAGA+AGG + tig0039356:14438-14457 None:intergenic 30.0%
!!! TGTTTTGATTAAACAGCAAG+GGG + tig0039356:14495-14514 None:intergenic 30.0%
!!! GTGTTTTGATTAAACAGCAA+GGG + tig0039356:14496-14515 None:intergenic 30.0%
!!! AGTGTTTTGATTAAACAGCA+AGG + tig0039356:14497-14516 None:intergenic 30.0%
TAATATCTCATACCCAAGTT+AGG + tig0039356:14802-14821 None:intergenic 30.0%
!!! TGTAAAGTCTTTTTTTGTGG+GGG - tig0039356:15083-15102 Msa1458030:intron 30.0%
TTTATCAAACGAAGAAGTTG+TGG - tig0039356:15324-15343 Msa1458030:CDS 30.0%
CAATCATCAATCTTACAGTA+AGG + tig0039356:15430-15449 None:intergenic 30.0%
CTGTATTTGAATTAAGGAAG+AGG + tig0039356:15465-15484 None:intergenic 30.0%
!!! GTCAAAGAGAGACATTTTTT+TGG - tig0039356:15681-15700 Msa1458030:intron 30.0%
ATAATGTGTATCTAGAGACT+TGG + tig0039356:15892-15911 None:intergenic 30.0%
CTTGCAAAAATTGGAGTTAT+TGG - tig0039356:16002-16021 Msa1458030:five_prime_UTR 30.0%
TCATGATTATTGTAATACCG+TGG - tig0039356:16105-16124 Msa1458030:five_prime_UTR 30.0%
CATGATTATTGTAATACCGT+GGG - tig0039356:16106-16125 Msa1458030:five_prime_UTR 30.0%
AGAAAAAATAGTGATTCCCA+CGG + tig0039356:16125-16144 None:intergenic 30.0%
!! TTGTCTTTGAAGTAGATAGT+AGG - tig0039356:16200-16219 Msa1458030:five_prime_UTR 30.0%
! GGAATGAAGAATTGTTGTTG+TGG + tig0039356:11257-11276 None:intergenic 35.0%
GCGTGAATCCAAAATCAAAT+CGG + tig0039356:11360-11379 None:intergenic 35.0%
AACAACAATCATCATGACTC+AGG - tig0039356:11457-11476 Msa1458030:three_prime_UTR 35.0%
! ATGATGGTGATGATTGTATC+AGG - tig0039356:11849-11868 Msa1458030:CDS 35.0%
!!! GTGGAAGTTTTGAATCGATA+TGG - tig0039356:11874-11893 Msa1458030:CDS 35.0%
AATGGGATCTTGTATAACAG+AGG - tig0039356:11984-12003 Msa1458030:CDS 35.0%
AGATTGCTTCTATGTATTGC+AGG - tig0039356:12151-12170 Msa1458030:intron 35.0%
TATTGCAGGCAAGGTAAAAA+GGG - tig0039356:12165-12184 Msa1458030:intron 35.0%
! GGGGCTTAAATGATTTTGTT+TGG - tig0039356:12551-12570 Msa1458030:intron 35.0%
CAAAAGTTGTCCATCTATCT+TGG - tig0039356:12875-12894 Msa1458030:intron 35.0%
! ACAGAACTTTTGTTCAAAGG+AGG - tig0039356:13019-13038 Msa1458030:CDS 35.0%
! CAGAACTTTTGTTCAAAGGA+GGG - tig0039356:13020-13039 Msa1458030:CDS 35.0%
TAACTTTCTTTGCAACCCTA+TGG + tig0039356:13088-13107 None:intergenic 35.0%
ATAGGGTTGCAAAGAAAGTT+AGG - tig0039356:13087-13106 Msa1458030:CDS 35.0%
TAGGGTTGCAAAGAAAGTTA+GGG - tig0039356:13088-13107 Msa1458030:CDS 35.0%
! CATTGTGCACTAAGCTTTAA+AGG + tig0039356:13122-13141 None:intergenic 35.0%
!! CTTTAAAGCTTAGTGCACAA+TGG - tig0039356:13120-13139 Msa1458030:CDS 35.0%
GATGGAGTCAATGATCAAAA+TGG - tig0039356:13164-13183 Msa1458030:CDS 35.0%
!! AATCTTGCTAGCCTTCAAAT+AGG + tig0039356:13291-13310 None:intergenic 35.0%
TTTGAAGGCTAGCAAGATTA+TGG - tig0039356:13292-13311 Msa1458030:intron 35.0%
!! GATATTGATTGCTTTTGCAG+TGG - tig0039356:13338-13357 Msa1458030:intron 35.0%
TACTTGGAAGATTAGGCTTA+AGG + tig0039356:13585-13604 None:intergenic 35.0%
GAGAGAGAGATGTATATACT+TGG + tig0039356:13601-13620 None:intergenic 35.0%
AAGTTACACAGAATACTGCT+TGG + tig0039356:13807-13826 None:intergenic 35.0%
AAATAGTTGTGTTGGAGCAA+TGG - tig0039356:13934-13953 Msa1458030:intron 35.0%
! CACATCTGGTTCATTCTTAA+GGG + tig0039356:14194-14213 None:intergenic 35.0%
! GATTTTTGCCTAAAGGATGT+TGG - tig0039356:14274-14293 Msa1458030:CDS 35.0%
CAAATTCATCCTTCTCTGTA+AGG + tig0039356:14333-14352 None:intergenic 35.0%
! TTTGTTGTGTTAGCAACAGA+TGG - tig0039356:14349-14368 Msa1458030:intron 35.0%
TTGTTGTGTTAGCAACAGAT+GGG - tig0039356:14350-14369 Msa1458030:intron 35.0%
!!! GCACTCTACAGTTTTGTTAT+AGG - tig0039356:14555-14574 Msa1458030:intron 35.0%
TTCTACACCTAACTTGATTG+TGG - tig0039356:14621-14640 Msa1458030:intron 35.0%
ATTTCGAGGCATATAGCAAA+GGG + tig0039356:14739-14758 None:intergenic 35.0%
TATTTCGAGGCATATAGCAA+AGG + tig0039356:14740-14759 None:intergenic 35.0%
TTCACTTTCTACACCTAACT+TGG - tig0039356:14786-14805 Msa1458030:intron 35.0%
TCACTTTCTACACCTAACTT+GGG - tig0039356:14787-14806 Msa1458030:intron 35.0%
TACTGAACCTTGGAAAAAGT+TGG - tig0039356:14924-14943 Msa1458030:intron 35.0%
!! GTTTCAACCAACTTTTTCCA+AGG + tig0039356:14934-14953 None:intergenic 35.0%
GGTAACAATGCTAGATCAAA+TGG - tig0039356:15132-15151 Msa1458030:CDS 35.0%
ATGCTAGATCAAATGGATGA+TGG - tig0039356:15139-15158 Msa1458030:CDS 35.0%
TAAAACATCCCAAATCTGCA+CGG + tig0039356:15308-15327 None:intergenic 35.0%
! TAAGATTGATGATTGTGCTG+CGG - tig0039356:15435-15454 Msa1458030:CDS 35.0%
GAGATGATTGATCAACAACT+GGG + tig0039356:15540-15559 None:intergenic 35.0%
AGAGATGATTGATCAACAAC+TGG + tig0039356:15541-15560 None:intergenic 35.0%
! AATATATGTTTTGCATCCGG+AGG - tig0039356:15787-15806 Msa1458030:intron 35.0%
TCTAGCACTAAAAATAAGCC+CGG + tig0039356:15823-15842 None:intergenic 35.0%
!! GTCATTTTCCTTCTCTGTAT+AGG - tig0039356:15844-15863 Msa1458030:intron 35.0%
CAAATCAACCTATACAGAGA+AGG + tig0039356:15855-15874 None:intergenic 35.0%
!! CTTCTCTGTATAGGTTGATT+TGG - tig0039356:15853-15872 Msa1458030:intron 35.0%
ATGACAGTTCAGAAAATCAC+CGG + tig0039356:15924-15943 None:intergenic 35.0%
!! TGGTTATGGATTTTTCAGTC+AGG - tig0039356:16022-16041 Msa1458030:five_prime_UTR 35.0%
!!! TTTGCGTTTTGATTTACTGC+AGG - tig0039356:16173-16192 Msa1458030:five_prime_UTR 35.0%
! GAATTGTTGTTGTGGTTGAG+AGG + tig0039356:11249-11268 None:intergenic 40.0%
! AAAAAGCGCGTGAATTGAAG+AGG + tig0039356:11388-11407 None:intergenic 40.0%
ACGTCTTCGATCAGAATTGT+CGG + tig0039356:11711-11730 None:intergenic 40.0%
! GTCTGTTTTGTATCAGACAC+CGG + tig0039356:11736-11755 None:intergenic 40.0%
TGAAACACTAACACAGACAC+AGG + tig0039356:11814-11833 None:intergenic 40.0%
! GAATCGATATGGAACGGATT+TGG - tig0039356:11885-11904 Msa1458030:CDS 40.0%
TCTGAACATTGTGAGAGCTT+TGG - tig0039356:11960-11979 Msa1458030:CDS 40.0%
CTGAACATTGTGAGAGCTTT+GGG - tig0039356:11961-11980 Msa1458030:CDS 40.0%
!! ATTGTGAGAGCTTTGGGAAT+GGG - tig0039356:11967-11986 Msa1458030:CDS 40.0%
GGATCTTGTATAACAGAGGT+TGG - tig0039356:11988-12007 Msa1458030:CDS 40.0%
TCTTGTATAACAGAGGTTGG+TGG - tig0039356:11991-12010 Msa1458030:CDS 40.0%
GTTAAAGGGTTCTTCTACCA+TGG - tig0039356:12086-12105 Msa1458030:intron 40.0%
! ACCATGGATTATAAGGTACC+TGG - tig0039356:12102-12121 Msa1458030:intron 40.0%
! CCATGGATTATAAGGTACCT+GGG - tig0039356:12103-12122 Msa1458030:intron 40.0%
CTGGGAGAATGTTCTTGAAT+GGG - tig0039356:12121-12140 Msa1458030:intron 40.0%
GTATTGCAGGCAAGGTAAAA+AGG - tig0039356:12164-12183 Msa1458030:intron 40.0%
ACCAAGATGCTATGCTTGTT+TGG - tig0039356:12193-12212 Msa1458030:intron 40.0%
CCAAGATGCTATGCTTGTTT+GGG - tig0039356:12194-12213 Msa1458030:intron 40.0%
CATAGACCAACATGGTTAGT+TGG + tig0039356:12348-12367 None:intergenic 40.0%
CTCATAGACATAGACCAACA+TGG + tig0039356:12356-12375 None:intergenic 40.0%
! TTTCCGTGTTTTTCCCAAGA+TGG - tig0039356:12442-12461 Msa1458030:intron 40.0%
! TTCCGTGTTTTTCCCAAGAT+GGG - tig0039356:12443-12462 Msa1458030:intron 40.0%
AACCCATCTTGGGAAAAACA+CGG + tig0039356:12448-12467 None:intergenic 40.0%
! TCCTAAAATGGGTTTGTGAC+TGG - tig0039356:12512-12531 Msa1458030:intron 40.0%
!!! ACTGGCTTTGGTTGTACTTT+TGG - tig0039356:12530-12549 Msa1458030:intron 40.0%
!!! CTGGCTTTGGTTGTACTTTT+GGG - tig0039356:12531-12550 Msa1458030:intron 40.0%
!!! TGGCTTTGGTTGTACTTTTG+GGG - tig0039356:12532-12551 Msa1458030:intron 40.0%
!! TGTGGTGTTTTTGATGGTCA+TGG - tig0039356:13053-13072 Msa1458030:CDS 40.0%
! TTTGATGGTCATGGACCTTA+TGG - tig0039356:13062-13081 Msa1458030:CDS 40.0%
AACATTGATCATGAGCTCGA+TGG - tig0039356:13236-13255 Msa1458030:intron 40.0%
CGATGGAGCAAATACTATCT+TGG - tig0039356:13253-13272 Msa1458030:intron 40.0%
GACCTTGTCATTGGAAATGT+GGG - tig0039356:13490-13509 Msa1458030:intron 40.0%
ACCTTGTCATTGGAAATGTG+GGG - tig0039356:13491-13510 Msa1458030:intron 40.0%
TAAGAGAATCCTCGTGATCT+CGG + tig0039356:13540-13559 None:intergenic 40.0%
AAAGACACACAGACTGAGAA+GGG + tig0039356:13710-13729 None:intergenic 40.0%
TAAAGACACACAGACTGAGA+AGG + tig0039356:13711-13730 None:intergenic 40.0%
! TTGTGTTGGAGCAATGGATT+GGG - tig0039356:13940-13959 Msa1458030:intron 40.0%
! CTTTTGGCAGAACGCTTAAT+TGG - tig0039356:13991-14010 Msa1458030:CDS 40.0%
GTGCCAATCTGATTGAAGTA+TGG + tig0039356:14082-14101 None:intergenic 40.0%
ATTTCACAGAGGAAGAAGAG+AGG - tig0039356:14140-14159 Msa1458030:CDS 40.0%
GATCAGACATCGTAAAGGAA+GGG - tig0039356:14162-14181 Msa1458030:CDS 40.0%
! CCACATCTGGTTCATTCTTA+AGG + tig0039356:14195-14214 None:intergenic 40.0%
CCTTAAGAATGAACCAGATG+TGG - tig0039356:14192-14211 Msa1458030:CDS 40.0%
ATTCATCCTTCTCTGTAAGG+CGG + tig0039356:14330-14349 None:intergenic 40.0%
TGTTGTGTTAGCAACAGATG+GGG - tig0039356:14351-14370 Msa1458030:intron 40.0%
CTGCTGAGACATACTCAATT+AGG - tig0039356:14655-14674 Msa1458030:intron 40.0%
CTGAGACATACTCAATTAGG+TGG - tig0039356:14658-14677 Msa1458030:intron 40.0%
TTTCGAGGCATATAGCAAAG+GGG + tig0039356:14738-14757 None:intergenic 40.0%
CTGTTGAGACATGCTTGATT+GGG - tig0039356:14826-14845 Msa1458030:intron 40.0%
CAAAATGCCAGAACTTTCAG+GGG + tig0039356:14992-15011 None:intergenic 40.0%
GCAAAATGCCAGAACTTTCA+GGG + tig0039356:14993-15012 None:intergenic 40.0%
ATATGGTAGCTCCTTGCAAT+CGG - tig0039356:15037-15056 Msa1458030:intron 40.0%
TAACTTTCTCTCCGATTGCA+AGG + tig0039356:15051-15070 None:intergenic 40.0%
TTGCAATCGGAGAGAAAGTT+AGG - tig0039356:15050-15069 Msa1458030:intron 40.0%
ATGATTCTTCCGTGCAGATT+TGG - tig0039356:15296-15315 Msa1458030:CDS 40.0%
TGATTCTTCCGTGCAGATTT+GGG - tig0039356:15297-15316 Msa1458030:CDS 40.0%
TTGAGTCAGCTGTTCTTTCT+TGG - tig0039356:15392-15411 Msa1458030:CDS 40.0%
TCATCTCTACCTAGTGAGAA+TGG - tig0039356:15553-15572 Msa1458030:intron 40.0%
CTACCTAGTGAGAATGGAAT+TGG - tig0039356:15559-15578 Msa1458030:intron 40.0%
ACTCCAATTCCATTCTCACT+AGG + tig0039356:15565-15584 None:intergenic 40.0%
TAGTGAGAATGGAATTGGAG+TGG - tig0039356:15564-15583 Msa1458030:intron 40.0%
AAAAGGCTTGGGAAGAGATA+TGG + tig0039356:15626-15645 None:intergenic 40.0%
TTTCCTTGGACAGCATTTGA+TGG - tig0039356:15744-15763 Msa1458030:intron 40.0%
TTCCTTGGACAGCATTTGAT+GGG - tig0039356:15745-15764 Msa1458030:intron 40.0%
!!! GGGCTTATTTTTAGTGCTAG+AGG - tig0039356:15822-15841 Msa1458030:intron 40.0%
!!! TTCACGCGCTTTTTGAGTCA+AGG - tig0039356:11394-11413 Msa1458030:three_prime_UTR 45.0%
ATTCTGATCGAAGACGTGTC+CGG - tig0039356:11714-11733 Msa1458030:three_prime_UTR 45.0%
GTGATGATTGTATCAGGCTG+TGG - tig0039356:11855-11874 Msa1458030:CDS 45.0%
! CGATATGGAACGGATTTGGT+TGG - tig0039356:11889-11908 Msa1458030:CDS 45.0%
! GAACGGATTTGGTTGGAGAA+GGG - tig0039356:11896-11915 Msa1458030:CDS 45.0%
! TCAGATTCGGAGTGTTTAGC+TGG - tig0039356:11925-11944 Msa1458030:CDS 45.0%
!! CATTGTGAGAGCTTTGGGAA+TGG - tig0039356:11966-11985 Msa1458030:CDS 45.0%
!! TGTATAACAGAGGTTGGTGG+TGG - tig0039356:11994-12013 Msa1458030:CDS 45.0%
GTCTCTGCTAACTTATTCGC+AGG - tig0039356:12032-12051 Msa1458030:intron 45.0%
TCGCAGGAATTGAACGTTGA+CGG - tig0039356:12048-12067 Msa1458030:intron 45.0%
AGGAATTGAACGTTGACGGT+GGG - tig0039356:12052-12071 Msa1458030:intron 45.0%
TGGGAAGAGAAGGAGGTTAA+AGG - tig0039356:12071-12090 Msa1458030:intron 45.0%
GGGAAGAGAAGGAGGTTAAA+GGG - tig0039356:12072-12091 Msa1458030:intron 45.0%
CCCAGGTACCTTATAATCCA+TGG + tig0039356:12106-12125 None:intergenic 45.0%
CCATTCAAGAACATTCTCCC+AGG + tig0039356:12123-12142 None:intergenic 45.0%
CCTGGGAGAATGTTCTTGAA+TGG - tig0039356:12120-12139 Msa1458030:intron 45.0%
GCTTCTATGTATTGCAGGCA+AGG - tig0039356:12156-12175 Msa1458030:intron 45.0%
CCCAAACAAGCATAGCATCT+TGG + tig0039356:12197-12216 None:intergenic 45.0%
AGATGCTATGCTTGTTTGGG+AGG - tig0039356:12197-12216 Msa1458030:intron 45.0%
! GCCAGTCACAAACCCATTTT+AGG + tig0039356:12516-12535 None:intergenic 45.0%
!! AATGGGTTTGTGACTGGCTT+TGG - tig0039356:12518-12537 Msa1458030:intron 45.0%
TCATGGACCTTATGGCCATA+GGG - tig0039356:13070-13089 Msa1458030:CDS 45.0%
TTTGCAACCCTATGGCCATA+AGG + tig0039356:13080-13099 None:intergenic 45.0%
AGCAGTTACCTTGATCAAGC+AGG - tig0039356:13367-13386 Msa1458030:intron 45.0%
GTTGCTTACCTGCTTGATCA+AGG + tig0039356:13378-13397 None:intergenic 45.0%
CCAGCCCCTAAAAGAACATA+AGG + tig0039356:13471-13490 None:intergenic 45.0%
!! CCTTATGTTCTTTTAGGGGC+TGG - tig0039356:13468-13487 Msa1458030:intron 45.0%
GGACCTTGTCATTGGAAATG+TGG - tig0039356:13489-13508 Msa1458030:intron 45.0%
CCTTGTCATTGGAAATGTGG+GGG - tig0039356:13492-13511 Msa1458030:intron 45.0%
!! GGGGATTCTAGAGCTGTATT+GGG - tig0039356:13511-13530 Msa1458030:intron 45.0%
AAGAGAATCCTCGTGATCTC+GGG + tig0039356:13539-13558 None:intergenic 45.0%
AAGACACACAGACTGAGAAG+GGG + tig0039356:13709-13728 None:intergenic 45.0%
GTTGTGTTGGAGCAATGGAT+TGG - tig0039356:13939-13958 Msa1458030:intron 45.0%
GAGAGGATCAGACATCGTAA+AGG - tig0039356:14157-14176 Msa1458030:CDS 45.0%
GGATCAGACATCGTAAAGGA+AGG - tig0039356:14161-14180 Msa1458030:CDS 45.0%
AGAATGAACCAGATGTGGCT+CGG - tig0039356:14197-14216 Msa1458030:CDS 45.0%
AGACCTGGGAAATCAGAGTT+AGG + tig0039356:14232-14251 None:intergenic 45.0%
TAACTCTGATTTCCCAGGTC+TGG - tig0039356:14231-14250 Msa1458030:CDS 45.0%
ATATCACCGCCTTACAGAGA+AGG - tig0039356:14321-14340 Msa1458030:intron 45.0%
TGTTAGCAACAGATGGGGTA+AGG - tig0039356:14356-14375 Msa1458030:intron 45.0%
GCTGTTGAGACATGCTTGAT+TGG - tig0039356:14825-14844 Msa1458030:intron 45.0%
TTGAGACATGCTTGATTGGG+TGG - tig0039356:14829-14848 Msa1458030:intron 45.0%
TGAGACATGCTTGATTGGGT+GGG - tig0039356:14830-14849 Msa1458030:intron 45.0%
AGCATTTCCCCTGAAAGTTC+TGG - tig0039356:14982-15001 Msa1458030:intron 45.0%
GGCAAAATGCCAGAACTTTC+AGG + tig0039356:14994-15013 None:intergenic 45.0%
CGAAGAAGTTGTGGAGATTG+TGG - tig0039356:15333-15352 Msa1458030:CDS 45.0%
GTCTACTGCTGCTAGATTAC+TGG - tig0039356:15369-15388 Msa1458030:CDS 45.0%
! TTGGACAGCATTTGATGGGT+GGG - tig0039356:15749-15768 Msa1458030:intron 45.0%
! TGTTTTGCATCCGGAGGAAA+AGG - tig0039356:15793-15812 Msa1458030:intron 45.0%
! GTTTTGCATCCGGAGGAAAA+GGG - tig0039356:15794-15813 Msa1458030:intron 45.0%
! TTTTGCATCCGGAGGAAAAG+GGG - tig0039356:15795-15814 Msa1458030:intron 45.0%
GTTGTGGTTGAGAGGAGAAG+CGG + tig0039356:11241-11260 None:intergenic 50.0%
! GGAACGGATTTGGTTGGAGA+AGG - tig0039356:11895-11914 Msa1458030:CDS 50.0%
! GGATTTGGTTGGAGAAGGGA+GGG - tig0039356:11900-11919 Msa1458030:CDS 50.0%
! GATTTGGTTGGAGAAGGGAG+GGG - tig0039356:11901-11920 Msa1458030:CDS 50.0%
AGAAGGGAGGGGATCAGATT+CGG - tig0039356:11912-11931 Msa1458030:CDS 50.0%
CAGGAATTGAACGTTGACGG+TGG - tig0039356:12051-12070 Msa1458030:intron 50.0%
ACCAGCGCAAAACCCATCTT+GGG + tig0039356:12458-12477 None:intergenic 50.0%
AACCAGCGCAAAACCCATCT+TGG + tig0039356:12459-12478 None:intergenic 50.0%
!!! TGGGTTTTGCGCTGGTTTGT+TGG - tig0039356:12462-12481 Msa1458030:intron 50.0%
!!! AAGGAGGGCACCGTTTTTTG+TGG - tig0039356:13035-13054 Msa1458030:CDS 50.0%
GTCATGGACCTTATGGCCAT+AGG - tig0039356:13069-13088 Msa1458030:CDS 50.0%
CCCCCACATTTCCAATGACA+AGG + tig0039356:13495-13514 None:intergenic 50.0%
!! GGGGGATTCTAGAGCTGTAT+TGG - tig0039356:13510-13529 Msa1458030:intron 50.0%
TTGGGATGTGTGTGTGTGTG+TGG + tig0039356:13685-13704 None:intergenic 50.0%
AGACACACAGACTGAGAAGG+GGG + tig0039356:13708-13727 None:intergenic 50.0%
GAATGAACCAGATGTGGCTC+GGG - tig0039356:14198-14217 Msa1458030:CDS 50.0%
CTGCCTAACTCTGATTTCCC+AGG - tig0039356:14226-14245 Msa1458030:CDS 50.0%
TGATTTCCCAGGTCTGGCTA+TGG - tig0039356:14237-14256 Msa1458030:CDS 50.0%
AGGCGGTGATATGAGACATC+TGG + tig0039356:14313-14332 None:intergenic 50.0%
AATCTAGCAGCAGTAGACCG+CGG + tig0039356:15367-15386 None:intergenic 50.0%
! ATCTGGTGTCAGCTTGTCTG+TGG + tig0039356:15506-15525 None:intergenic 50.0%
ACTGGGTCTGTTGATGCATC+TGG + tig0039356:15523-15542 None:intergenic 50.0%
CACCCATCAAATGCTGTCCA+AGG + tig0039356:15750-15769 None:intergenic 50.0%
CTTGGACAGCATTTGATGGG+TGG - tig0039356:15748-15767 Msa1458030:intron 50.0%
! TGGACAGCATTTGATGGGTG+GGG - tig0039356:15750-15769 Msa1458030:intron 50.0%
! GCATTTGATGGGTGGGGTAT+TGG - tig0039356:15756-15775 Msa1458030:intron 50.0%
!! TTTGATGGGTGGGGTATTGG+AGG - tig0039356:15759-15778 Msa1458030:intron 50.0%
TGTGACGCAACCACTCGTGA+CGG - tig0039356:11209-11228 Msa1458030:three_prime_UTR 55.0%
! CGGATTTGGTTGGAGAAGGG+AGG - tig0039356:11899-11918 Msa1458030:CDS 55.0%
ACGTTGACGGTGGGAAGAGA+AGG - tig0039356:12061-12080 Msa1458030:intron 55.0%
TTGACGGTGGGAAGAGAAGG+AGG - tig0039356:12064-12083 Msa1458030:intron 55.0%
!! TCCCAAGATGGGTTTTGCGC+TGG - tig0039356:12454-12473 Msa1458030:intron 55.0%
TAGGGGCTGGACCTTGTCAT+TGG - tig0039356:13481-13500 Msa1458030:intron 55.0%
ATTGGGAACCCGAGATCACG+AGG - tig0039356:13528-13547 Msa1458030:intron 55.0%
CACAGACTGAGAAGGGGGTT+GGG + tig0039356:13703-13722 None:intergenic 55.0%
ACACAGACTGAGAAGGGGGT+TGG + tig0039356:13704-13723 None:intergenic 55.0%
! AACCAGATGTGGCTCGGGTT+TGG - tig0039356:14203-14222 Msa1458030:CDS 55.0%
AGATTGTGGCATCTGCACCG+CGG - tig0039356:15347-15366 Msa1458030:CDS 55.0%
! ATCCGGAGGAAAAGGGGTAC+CGG - tig0039356:15801-15820 Msa1458030:intron 55.0%
GTCACGAGTGGTTGCGTCAC+AGG + tig0039356:11210-11229 None:intergenic 60.0%
!! ACAGAGGTTGGTGGTGGTGC+TGG - tig0039356:12000-12019 Msa1458030:CDS 60.0%
AGCCAAACCCGAGCCACATC+TGG + tig0039356:14208-14227 None:intergenic 60.0%
TCCCAGGTCTGGCTATGGCA+CGG - tig0039356:14242-14261 Msa1458030:CDS 60.0%
! CTGGCTATGGCACGGGCTTT+TGG - tig0039356:14250-14269 Msa1458030:CDS 60.0%
!! TCCGGAGGAAAAGGGGTACC+GGG - tig0039356:15802-15821 Msa1458030:intron 60.0%
GTTGCGTCACAGGCAGGTGG+TGG + tig0039356:11200-11219 None:intergenic 65.0%
GTGGTTGCGTCACAGGCAGG+TGG + tig0039356:11203-11222 None:intergenic 65.0%
CGAGTGGTTGCGTCACAGGC+AGG + tig0039356:11206-11225 None:intergenic 65.0%
!! GAGGTTGGTGGTGGTGCTGG+TGG - tig0039356:12003-12022 Msa1458030:CDS 65.0%
CCCGTGCCATAGCCAGACCT+GGG + tig0039356:14246-14265 None:intergenic 65.0%
CCCAGGTCTGGCTATGGCAC+GGG - tig0039356:14243-14262 Msa1458030:CDS 65.0%
! GCCCGGTACCCCTTTTCCTC+CGG + tig0039356:15806-15825 None:intergenic 65.0%
GCGGTAGCGTCCGTCACGAG+TGG + tig0039356:11222-11241 None:intergenic 70.0%
GCCCGTGCCATAGCCAGACC+TGG + tig0039356:14247-14266 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0039356 gene 11102 16244 11102 ID=Msa1458030;Name=Msa1458030
tig0039356 mRNA 11102 16244 11102 ID=Msa1458030-mRNA-1;Parent=Msa1458030;Name=Msa1458030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=368|1|1|1|1|1|6|638|452
tig0039356 exon 11102 12033 11102 ID=Msa1458030-mRNA-1:exon:21584;Parent=Msa1458030-mRNA-1
tig0039356 exon 12974 13197 12974 ID=Msa1458030-mRNA-1:exon:21583;Parent=Msa1458030-mRNA-1
tig0039356 exon 13745 13862 13745 ID=Msa1458030-mRNA-1:exon:21582;Parent=Msa1458030-mRNA-1
tig0039356 exon 13958 14323 13958 ID=Msa1458030-mRNA-1:exon:21581;Parent=Msa1458030-mRNA-1
tig0039356 exon 15128 15475 15128 ID=Msa1458030-mRNA-1:exon:21580;Parent=Msa1458030-mRNA-1
tig0039356 exon 15868 16244 15868 ID=Msa1458030-mRNA-1:exon:21579;Parent=Msa1458030-mRNA-1
tig0039356 five_prime_UTR 15877 16244 15877 ID=Msa1458030-mRNA-1:five_prime_utr;Parent=Msa1458030-mRNA-1
tig0039356 CDS 15868 15876 15868 ID=Msa1458030-mRNA-1:cds;Parent=Msa1458030-mRNA-1
tig0039356 CDS 15128 15475 15128 ID=Msa1458030-mRNA-1:cds;Parent=Msa1458030-mRNA-1
tig0039356 CDS 13958 14323 13958 ID=Msa1458030-mRNA-1:cds;Parent=Msa1458030-mRNA-1
tig0039356 CDS 13745 13862 13745 ID=Msa1458030-mRNA-1:cds;Parent=Msa1458030-mRNA-1
tig0039356 CDS 12974 13197 12974 ID=Msa1458030-mRNA-1:cds;Parent=Msa1458030-mRNA-1
tig0039356 CDS 11740 12033 11740 ID=Msa1458030-mRNA-1:cds;Parent=Msa1458030-mRNA-1
tig0039356 three_prime_UTR 11102 11739 11102 ID=Msa1458030-mRNA-1:three_prime_utr;Parent=Msa1458030-mRNA-1
Gene Sequence

>Msa1458030

ATGACTCAGGCTGTGGAAGTTTTGAATCGATATGGAACGGATTTGGTTGGAGAAGGGAGGGGATCAGATTCGGAGTGTTTAGCTGGTTTTGAATGTTTTCTGAACATTGTGAGAGCTTTGGGAATGGGATCTTGTATAACAGAGGTTGGTGGTGGTGCTGGTGGTTCGCAGTCTCTGCTAACTTATTCGCAGGAATTGAACGTTGACGGTGGGAAGAGAAGGAGGTTAAAGGGTTCTTCTACCATGGATTATAAGGTACCTGGGAGAATGTTCTTGAATGGGTCAAGTGAGATTGCTTCTATGTATTGCAGGCAAGGTAAAAAGGGAATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAGGGCACCGTTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCAAAGAAAGTTAGGGATTCTTTCCCTTTAAAGCTTAGTGCACAATGGGATTTGCATCGTAAGAATAAAGATGGAGTCAATGATCAAAATGGTGCTGCCACAAGTTATAATTCTGAAGAGCAAATTAAACTGATTGACGAGAACATTGATCATGAGCTCGATGGAGCAAATACTATCTTGGCACTAAGAGAATCCTATTTGAAGGCTAGCAAGATTATGGACAAAGAACTGAAAATGCATCGTGATATTGATTGCTTTTGCAGTGGGACTACAGCAGTTACCTTGATCAAGCAGGGGCTGGACCTTGTCATTGGAAATGTGGGGGATTCTAGAGCTGTATTGGGAACCCGAGATCACGAGGATTCTCTTATTGCTGTTCAGTTGACTGTTGACCTTAAGCCTAATCTTCCAAAGGAAGAAGAGAGGATCAGACATCGTAAAGGAAGGGTGTTTTCCCTTAAGAATGAACCAGATGTGGCTCGGGTTTGGCTGCCTAACTCTGATTTCCCAGGTCTGGCTATGGCACGGGCTTTTGGAGATTTTTGCCTAAAGGATGTTGGATTGATTTCTGTTCCAGATGTCTCATATCACCGCCTTACAGAGAAGGATGAATTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTTTTATCAAACGAAGAAGTTGTGGAGATTGTGGCATCTGCACCGCGGTCTACTGCTGCTAGATTACTGGTTGAGTCAGCTGTTCTTTCTTGGAAGACAAAATTCCCTTACTGTAAGATTGATGATTGTGCTGCGGTGTGCCTCTTCCTTAATTCAAATACAGAGTTGAATGCTGAACATACCACAGACAAGCTGACACCAGATGCATCAACAGACCCAGTTGTTGATCAATCATCTCTACCTAGTGAGAATGGAATTGGAGTGGAAGCCGAAAAACTGCTGTGA

Protein sequence

>Msa1458030

MTQAVEVLNRYGTDLVGEGRGSDSECLAGFECFLNIVRALGMGSCITEVGGGAGGSQSLLTYSQELNVDGGKRRRLKGSSTMDYKVPGRMFLNGSSEIASMYCRQGKKGINQDAMLVWENFCSKEGTVFCGVFDGHGPYGHRVAKKVRDSFPLKLSAQWDLHRKNKDGVNDQNGAATSYNSEEQIKLIDENIDHELDGANTILALRESYLKASKIMDKELKMHRDIDCFCSGTTAVTLIKQGLDLVIGNVGDSRAVLGTRDHEDSLIAVQLTVDLKPNLPKEEERIRHRKGRVFSLKNEPDVARVWLPNSDFPGLAMARAFGDFCLKDVGLISVPDVSYHRLTEKDEFVVLATDGIWDVLSNEEVVEIVASAPRSTAARLLVESAVLSWKTKFPYCKIDDCAAVCLFLNSNTELNAEHTTDKLTPDASTDPVVDQSSLPSENGIGVEAEKLL*