AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128330 MtrunA17_Chr7g0271951 92.959 909 13 4 1 863 1 904 0.0 1680
Msa1128330 MtrunA17_Chr4g0061801 36.441 118 70 3 425 538 73 189 6.97e-17 85.1
Msa1128330 MtrunA17_Chr4g0061801 43.617 94 51 1 758 851 518 609 1.44e-14 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128330 AT3G05670.3 37.106 919 478 24 5 863 4 882 1.40e-123 394
Msa1128330 AT3G05670.1 37.106 919 478 24 5 863 4 882 1.40e-123 394
Msa1128330 AT3G05670.2 37.106 919 478 24 5 863 4 882 1.40e-123 394

Find 226 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTATATGGCCTGGAATTT+TGG 0.124200 7_3:-80187208 Msa1128330:CDS
CCTTGAATTGCTCATTCTTA+TGG 0.185613 7_3:+80187281 None:intergenic
AGATGTGGTTAAAAGTATTT+TGG 0.206841 7_3:-80186599 Msa1128330:CDS
TGAATAGCCCTGAAATTAAT+AGG 0.209679 7_3:-80187419 Msa1128330:CDS
CTTGGTTCCCTATTAATTTC+AGG 0.214253 7_3:+80187411 None:intergenic
GAAGAACAAGATGAAGAAAA+AGG 0.232244 7_3:-80189217 Msa1128330:CDS
AAATTCTTCGTCTTCATAAA+TGG 0.258327 7_3:+80188913 None:intergenic
CTTTCGTCTTCTCTTTCTCT+TGG 0.260528 7_3:+80188724 None:intergenic
CTGCTATTTGTTCTGATGGC+TGG 0.262892 7_3:+80188641 None:intergenic
CACACTTATTGTGTTGGTTT+GGG 0.278946 7_3:-80187849 Msa1128330:CDS
GGGTCTCCATTCTGCATAAA+TGG 0.287184 7_3:+80187309 None:intergenic
TTCAAGGGGCCCAGTGGTTC+AGG 0.296545 7_3:-80187265 Msa1128330:CDS
ATTGTCTCAAGATGCTGATT+TGG 0.302977 7_3:-80187028 Msa1128330:CDS
ACATCAACCTTATCAGATTA+TGG 0.305141 7_3:-80187183 Msa1128330:CDS
CGATGAGGATTATGTGGTTT+CGG 0.319604 7_3:-80189494 Msa1128330:CDS
CAACTCAAAGCCTGCCTTCC+CGG 0.326688 7_3:-80187728 Msa1128330:CDS
AGAAGAAGTGGAAGTGGAAA+TGG 0.331735 7_3:-80189092 Msa1128330:CDS
ATCCTTGAAGATGCCAATTC+CGG 0.338850 7_3:-80188587 Msa1128330:CDS
CTTCTAGCAGAGGTCGAAAA+AGG 0.347985 7_3:-80188772 Msa1128330:CDS
GTGCAGGCTTACTGATTGTT+TGG 0.350078 7_3:+80188150 None:intergenic
ACACACTTATTGTGTTGGTT+TGG 0.353037 7_3:-80187850 Msa1128330:CDS
AAGGGGCAGAAAGAAGAAAA+AGG 0.360279 7_3:-80188942 Msa1128330:CDS
TTCAAATACCTGATCACGTT+CGG 0.363155 7_3:+80188091 None:intergenic
GAGAAGTACCTGAAGGTAAT+TGG 0.364011 7_3:-80187824 Msa1128330:CDS
AGAAGAAGTGGAAGTGGAAG+TGG 0.365945 7_3:-80189044 Msa1128330:CDS
CTTTCTGCTATTTGTTCTGA+TGG 0.368521 7_3:+80188637 None:intergenic
CTCGCAATCTGAGCCGGAAT+TGG 0.377934 7_3:+80188574 None:intergenic
TTGTCTCAAGATGCTGATTT+GGG 0.385700 7_3:-80187027 Msa1128330:intron
GGCCTGTGAATGCAGCTATA+TGG 0.385787 7_3:-80187221 Msa1128330:CDS
CAGGTGATGGCCGGGAAGGC+AGG 0.388209 7_3:+80187718 None:intergenic
TTTCGTCTTCTCTTTCTCTT+GGG 0.388977 7_3:+80188725 None:intergenic
CTGCTGCTGCATGGGTGGAT+TGG 0.389809 7_3:+80187159 None:intergenic
TCTGTGAAATCTTCTTCCTC+TGG 0.390685 7_3:+80188983 None:intergenic
TCTTCACAGTGGTTACGATT+AGG 0.391290 7_3:-80186565 Msa1128330:CDS
AGAGGAAGAAGAAGTGGAAG+TGG 0.404080 7_3:-80189098 Msa1128330:CDS
GGATGAGGAGGAAGAGGAAG+AGG 0.404452 7_3:-80189116 Msa1128330:CDS
GAGTCCACAAGCAGCGAGTA+TGG 0.405089 7_3:+80186750 None:intergenic
TAAATCAGATTCTTGAGCTT+GGG 0.405889 7_3:+80187758 None:intergenic
CTCCTGAGTTCTTCTTCAGT+TGG 0.407979 7_3:+80187969 None:intergenic
GTTGATGTCCCCAAAATTCC+AGG 0.409316 7_3:+80187198 None:intergenic
CCCCACATTGAATTAATTGC+TGG 0.411682 7_3:-80186679 Msa1128330:CDS
TGCTATTTGTTCTGATGGCT+GGG 0.413685 7_3:+80188642 None:intergenic
AGTGGAAATGGAAGAGGAAG+AGG 0.416959 7_3:-80189080 Msa1128330:CDS
AGTGGAAGTGGAAGTGGAAG+AGG 0.417775 7_3:-80189038 Msa1128330:CDS
AGAAGTAGAAGAAGAGGAGG+AGG 0.428320 7_3:-80189182 Msa1128330:CDS
GAAGAGTGAGGTGGGAAAAC+AGG 0.429247 7_3:-80188312 Msa1128330:intron
GAAGGAGCTTCTCCGATGTC+TGG 0.435810 7_3:-80187588 Msa1128330:CDS
TCTGCTGTTGTTGATCGTGC+AGG 0.435897 7_3:+80188134 None:intergenic
GATAGAATGGCTTCTACAAC+TGG 0.435937 7_3:-80187483 Msa1128330:CDS
AGAAGAAGGCTTTGAAGAAA+AGG 0.437613 7_3:-80188805 Msa1128330:CDS
GTGATTTGAGAAAGAGGGTT+AGG 0.441305 7_3:-80189543 Msa1128330:CDS
TTGGTTCCCTATTAATTTCA+GGG 0.441433 7_3:+80187412 None:intergenic
GCTACGTTCAATTGATAGAA+TGG 0.442187 7_3:-80187496 Msa1128330:CDS
AGAGGAATCTCAAGGAAGAA+AGG 0.442305 7_3:-80188357 Msa1128330:CDS
GGACAAATGAGTATGATTAA+AGG 0.442629 7_3:-80186655 Msa1128330:CDS
TTTAAAGATGCCAAAGCAAC+TGG 0.442699 7_3:+80187783 None:intergenic
GAACACATAACGGACTCATA+TGG 0.444472 7_3:+80187936 None:intergenic
ATACTTTCTCGTATATGAAC+AGG 0.444823 7_3:+80187699 None:intergenic
AGAAAGAGAAGACGAAAGAA+TGG 0.448531 7_3:-80188719 Msa1128330:CDS
AGAGGAGGATGAGGAGGAAG+AGG 0.451552 7_3:-80189122 Msa1128330:CDS
AATGGAAGAGGAAGAGGAAG+AGG 0.452919 7_3:-80189074 Msa1128330:CDS
GTTTATAGAAGACGAGGATT+CGG 0.452935 7_3:-80189389 Msa1128330:CDS
AGAAAGAGGGTTAGGTCAAA+GGG 0.453596 7_3:-80189535 Msa1128330:CDS
GAAGAAGGCTTTGAAGAAAA+GGG 0.453993 7_3:-80188804 Msa1128330:CDS
GAATAGCCCTGAAATTAATA+GGG 0.454184 7_3:-80187418 Msa1128330:CDS
AGAGGAAGAGGAAGAAGAAG+TGG 0.458133 7_3:-80189104 Msa1128330:CDS
GGCCATATAGCTGCATTCAC+AGG 0.458181 7_3:+80187219 None:intergenic
GTTCTTATATGTTGAGAACT+TGG 0.458529 7_3:+80187393 None:intergenic
ATCTCTCCATTTATGCAGAA+TGG 0.461478 7_3:-80187315 Msa1128330:CDS
GCTTCTCCGATGTCTGGAGG+TGG 0.461950 7_3:-80187582 Msa1128330:CDS
TTAAATCAGATTCTTGAGCT+TGG 0.463615 7_3:+80187757 None:intergenic
CCTGCACACACTTATTGTGT+TGG 0.464630 7_3:-80187855 Msa1128330:CDS
TCTTCTTCTTTGACAGTAGC+GGG 0.465078 7_3:+80187108 None:intergenic
AATAGATCGAGGGCTAAAAC+TGG 0.465701 7_3:-80189334 Msa1128330:CDS
TTCAGGTTATAGTACTTTCA+AGG 0.466528 7_3:-80186797 Msa1128330:intron
TCAAATACCTGATCACGTTC+GGG 0.467441 7_3:+80188092 None:intergenic
GAGGACTTGAAGAGTGAGGT+GGG 0.468611 7_3:-80188320 Msa1128330:CDS
TGGACAATCAGACACATTCC+CGG 0.469120 7_3:+80189465 None:intergenic
AGTGGAAGTGGAAATGGAAG+AGG 0.469237 7_3:-80189086 Msa1128330:CDS
CACAGGCCCGTTCGAAAACA+TGG 0.469763 7_3:+80187236 None:intergenic
TGTTTGATCTGCTGCTGCAT+GGG 0.470031 7_3:+80187151 None:intergenic
ATGGTTGAATCCTGAACCAC+TGG 0.473286 7_3:+80187255 None:intergenic
ATGTTTGATCTGCTGCTGCA+TGG 0.473519 7_3:+80187150 None:intergenic
GCAAACGTGATTTGAGAAAG+AGG 0.473708 7_3:-80189549 Msa1128330:CDS
TGAAGACGAAGAATTTAAAC+CGG 0.473783 7_3:-80188906 Msa1128330:CDS
CTTCTCCGATGTCTGGAGGT+GGG 0.475968 7_3:-80187581 Msa1128330:CDS
GAGGTGAAGACATCAGGTTC+AGG 0.479499 7_3:+80187673 None:intergenic
ATGTATGAGGTGAAGACATC+AGG 0.483949 7_3:+80187667 None:intergenic
ACAGATGGTAAAGGTAAGAA+AGG 0.486053 7_3:-80189578 None:intergenic
AGACATCGGAGAAGCTCCTT+CGG 0.486565 7_3:+80187590 None:intergenic
ATGTGGTTTCGGATGATGCC+GGG 0.487381 7_3:-80189483 Msa1128330:CDS
GAGAAAGAGGGTTAGGTCAA+AGG 0.488109 7_3:-80189536 Msa1128330:CDS
TGGTTGTAGACCAGTTGCTT+TGG 0.490683 7_3:-80187793 Msa1128330:CDS
TTTGTAGCTGCTGAACTTGA+CGG 0.493087 7_3:+80187526 None:intergenic
TTCTCCGATGTCTGGAGGTG+GGG 0.496212 7_3:-80187580 Msa1128330:CDS
GAAAGAGATCAGTCCTGAAA+AGG 0.496295 7_3:-80188619 Msa1128330:CDS
CCATAAGAATGAGCAATTCA+AGG 0.500298 7_3:-80187281 Msa1128330:CDS
AGAGGAAGAAGTAGAAGAAG+AGG 0.500587 7_3:-80189188 Msa1128330:CDS
GATTGGTCCATAATCTGATA+AGG 0.500628 7_3:+80187176 None:intergenic
TCACAGTACCAATTACCTTC+AGG 0.502598 7_3:+80187816 None:intergenic
AAAGGAGCGATTGCAGTCAA+TGG 0.505261 7_3:-80187070 Msa1128330:CDS
AGAAGACGAGGATTCGGAAA+AGG 0.505843 7_3:-80189383 Msa1128330:CDS
AGCCGGAATTGGCATCTTCA+AGG 0.506290 7_3:+80188585 None:intergenic
TCTGTGTAATCTTCGTCCTC+CGG 0.506793 7_3:+80188887 None:intergenic
TTGATCTGCTGCTGCATGGG+TGG 0.507527 7_3:+80187154 None:intergenic
GTATATGAACAGGTGATGGC+CGG 0.507755 7_3:+80187709 None:intergenic
TTGCTCATTCTTATGGAGAA+GGG 0.514261 7_3:+80187288 None:intergenic
GGAAGAAGTAGAAGAAGAGG+AGG 0.515469 7_3:-80189185 Msa1128330:CDS
CACGAAGATGGGCAAGAAGA+AGG 0.515519 7_3:-80188819 Msa1128330:CDS
TATGTGGTTTCGGATGATGC+CGG 0.515722 7_3:-80189484 Msa1128330:CDS
GTGAATGCAGCTATATGGCC+TGG 0.517468 7_3:-80187216 Msa1128330:CDS
AGATAACTTGCACATTGTAA+AGG 0.517805 7_3:-80187088 Msa1128330:CDS
GTGGTTACGATTAGGACTTT+AGG 0.519386 7_3:-80186557 None:intergenic
GAGGAATCTCAAGGAAGAAA+GGG 0.523223 7_3:-80188356 Msa1128330:CDS
GGAAAAGGAGGTGATTCAAC+GGG 0.526113 7_3:-80189368 Msa1128330:CDS
ATCTCAAGGAAGAAAGGGTA+AGG 0.528597 7_3:-80188351 Msa1128330:CDS
ATTGCTCATTCTTATGGAGA+AGG 0.529056 7_3:+80187287 None:intergenic
CACCGTCTCTCTGATAAAGT+TGG 0.530129 7_3:+80187555 None:intergenic
TGATGAAGAGGAGGATGAGG+AGG 0.531417 7_3:-80189128 Msa1128330:CDS
TCTTCGAATGGAAAATGAAG+TGG 0.531620 7_3:-80188444 Msa1128330:CDS
TCAAACATTGTCACTGAGGT+TGG 0.532392 7_3:-80187135 Msa1128330:CDS
AGAGGACTTGAAGAGTGAGG+TGG 0.533578 7_3:-80188321 Msa1128330:CDS
GAGGAGAGCTTCTCTTCGAA+TGG 0.534382 7_3:-80188456 Msa1128330:CDS
CACATTGAATTAATTGCTGG+TGG 0.534434 7_3:-80186676 Msa1128330:CDS
TTTGGATGGATGTGCGGCTG+AGG 0.536263 7_3:-80189425 Msa1128330:CDS
TAATTCAATGTGGGGACAGA+CGG 0.539650 7_3:+80186687 None:intergenic
TGTTGATGAAGAGGAGGATG+AGG 0.540310 7_3:-80189131 Msa1128330:CDS
ATGGAAGCCTCCAGCACGGA+AGG 0.541330 7_3:-80188393 Msa1128330:CDS
ATCTTCTTCTTTGACAGTAG+CGG 0.541489 7_3:+80187107 None:intergenic
TCCTTACCCTTCCGTGCTGG+AGG 0.542762 7_3:+80188386 None:intergenic
CATAAGAATGAGCAATTCAA+GGG 0.546538 7_3:-80187280 Msa1128330:CDS
GAAATATAAGAAGGAACTTG+AGG 0.547708 7_3:-80188475 Msa1128330:CDS
CGAGGGCTAAAACTGGTGTA+AGG 0.548094 7_3:-80189327 Msa1128330:CDS
TCTAGACTCGCAATCTGAGC+CGG 0.548400 7_3:+80188568 None:intergenic
CCAACACAATAAGTGTGTGC+AGG 0.549150 7_3:+80187855 None:intergenic
TCTACAACTGGCAGAACTAT+CGG 0.549352 7_3:-80187471 Msa1128330:CDS
GATCAGTCCTGAAAAGGAGA+AGG 0.552181 7_3:-80188613 Msa1128330:CDS
TGGGGACAGACGGATGGTGG+AGG 0.552215 7_3:+80186697 None:intergenic
ATGACACTCTGAACACATAA+CGG 0.553670 7_3:+80187926 None:intergenic
ATGTGTTCAGAGTGTCATCT+AGG 0.555373 7_3:-80187921 Msa1128330:CDS
TGCTCATTCTTATGGAGAAG+GGG 0.556205 7_3:+80187289 None:intergenic
GAAGGGTAAGGAAAAGATAG+AGG 0.556670 7_3:-80188375 Msa1128330:CDS
CAACACAATAAGTGTGTGCA+GGG 0.558064 7_3:+80187856 None:intergenic
TGATTCCGATGAGGATTATG+TGG 0.558363 7_3:-80189500 Msa1128330:CDS
CATACCATACTCGCTGCTTG+TGG 0.558512 7_3:-80186754 Msa1128330:CDS
AGTAGAGGACTTGAAGAGTG+AGG 0.559366 7_3:-80188324 Msa1128330:CDS
ACACTTATTGTGTTGGTTTG+GGG 0.561817 7_3:-80187848 Msa1128330:CDS
ATTCAAGTTACTTACTGTAC+CGG 0.563595 7_3:+80187437 None:intergenic
TACAAAAGAATCAAAACAAG+AGG 0.565655 7_3:+80186624 None:intergenic
ACCAGCAATTAATTCAATGT+GGG 0.568218 7_3:+80186678 None:intergenic
ATGTGGGGACAGACGGATGG+TGG 0.575769 7_3:+80186694 None:intergenic
CCTTGACTAAAAGATGTATG+AGG 0.577067 7_3:+80187654 None:intergenic
GAAGTGGAAGTGGAAGAGGT+AGG 0.578618 7_3:-80189034 Msa1128330:CDS
ATCAGTCCTGAAAAGGAGAA+GGG 0.579310 7_3:-80188612 Msa1128330:CDS
CAAACGTGATTTGAGAAAGA+GGG 0.579793 7_3:-80189548 Msa1128330:CDS
ATGAAGATCTACATCAGCAA+TGG 0.581305 7_3:-80188412 Msa1128330:CDS
ATGAGGAGGAAGAAGAAACA+AGG 0.582110 7_3:-80188961 Msa1128330:CDS
AGAACAGGTGAGAGAAGCCG+TGG 0.582933 7_3:-80188507 Msa1128330:CDS
AGAAGATTTCACAGATGAGG+AGG 0.583606 7_3:-80188975 Msa1128330:CDS
CGGAAAAGGAGGTGATTCAA+CGG 0.587891 7_3:-80189369 Msa1128330:CDS
ACTATCGGTGTTTCAGCTAC+CGG 0.588312 7_3:-80187456 Msa1128330:CDS
TGAGGAGGAAGAAGAAACAA+GGG 0.589315 7_3:-80188960 Msa1128330:CDS
GGAAGAAGATTTCACAGATG+AGG 0.590315 7_3:-80188978 Msa1128330:CDS
CACCAGCAATTAATTCAATG+TGG 0.590559 7_3:+80186677 None:intergenic
ACGATCAACAACAGCAGAAG+AGG 0.590744 7_3:-80188129 Msa1128330:CDS
TATATGAACAGGTGATGGCC+GGG 0.592446 7_3:+80187710 None:intergenic
TGACTAAATTTAATAGATCG+AGG 0.593160 7_3:-80189345 Msa1128330:CDS
TATATTTCCACACAACTCCA+CGG 0.596331 7_3:+80188490 None:intergenic
AGTTGTGTGGAAATATAAGA+AGG 0.598804 7_3:-80188484 Msa1128330:CDS
ATAGTAAACTCATAATCAGA+TGG 0.599794 7_3:+80188545 None:intergenic
GGAGCTTCTCCGATGTCTGG+AGG 0.601337 7_3:-80187585 Msa1128330:CDS
GTACTTTCAAGGACATTGCA+AGG 0.602317 7_3:-80186786 Msa1128330:CDS
TGAACAGGTGATGGCCGGGA+AGG 0.603021 7_3:+80187714 None:intergenic
AGGGTTAGGTCAAAGGGCAG+TGG 0.607527 7_3:-80189529 Msa1128330:CDS
TCTCGTATATGAACAGGTGA+TGG 0.613237 7_3:+80187705 None:intergenic
CGAATGGAAAATGAAGTGGT+TGG 0.613778 7_3:-80188440 Msa1128330:CDS
TTACAATGATGTTGATGAAG+AGG 0.614390 7_3:-80189140 Msa1128330:CDS
GAAAAGATAGAGGAATCTCA+AGG 0.614767 7_3:-80188365 Msa1128330:CDS
GGTGCCCCACCTCCAGACAT+CGG 0.618253 7_3:+80187576 None:intergenic
CGAAACCACATAATCCTCAT+CGG 0.618800 7_3:+80189495 None:intergenic
TGATGGGTTTATAGAAGACG+AGG 0.620222 7_3:-80189395 Msa1128330:CDS
GACTAAATTTAATAGATCGA+GGG 0.620528 7_3:-80189344 Msa1128330:CDS
AGCCAACTGAAGAAGAACTC+AGG 0.620739 7_3:-80187971 Msa1128330:CDS
GTTTCTGCAACTTCTAGCAG+AGG 0.621858 7_3:-80188782 Msa1128330:CDS
TCAATGTGGGGACAGACGGA+TGG 0.622245 7_3:+80186691 None:intergenic
CACCAACTTTATCAGAGAGA+CGG 0.623622 7_3:-80187557 Msa1128330:CDS
CAATGATGTTGATGAAGAGG+AGG 0.631719 7_3:-80189137 Msa1128330:CDS
AAGCCTCGAGGAAGAGACAG+AGG 0.635561 7_3:-80189282 Msa1128330:CDS
CGAAGATTACACAGATGAGG+AGG 0.635569 7_3:-80188879 Msa1128330:CDS
AAACTGGTGTAAGGCGTCAG+CGG 0.637909 7_3:-80189318 Msa1128330:CDS
GAGCAATTCAAGGGGCCCAG+TGG 0.643280 7_3:-80187271 Msa1128330:CDS
AGACGAGGATTCGGAAAAGG+AGG 0.643886 7_3:-80189380 Msa1128330:CDS
TTCTCAACATATAAGAACAC+AGG 0.644148 7_3:-80187388 Msa1128330:CDS
ATGAGGAGGAAGAAGAAACA+AGG 0.644891 7_3:-80188865 Msa1128330:CDS
AGAGAAGCCGTGGAGTTGTG+TGG 0.645101 7_3:-80188497 Msa1128330:CDS
ATCAACAACAGCAGAAGAGG+CGG 0.646830 7_3:-80188126 Msa1128330:CDS
GGACGAAGATTACACAGATG+AGG 0.652228 7_3:-80188882 Msa1128330:CDS
AGCAATGGAAGCCTCCAGCA+CGG 0.653022 7_3:-80188397 Msa1128330:CDS
CATATAAGAACACAGGACGT+AGG 0.654634 7_3:-80187381 Msa1128330:CDS
AAGAGAAGACGAAAGAATGG+AGG 0.656131 7_3:-80188716 Msa1128330:CDS
AACCCTCTGTCTCTTCCTCG+AGG 0.660516 7_3:+80189279 None:intergenic
TGGAAGCCTCCAGCACGGAA+GGG 0.661115 7_3:-80188392 Msa1128330:CDS
GGATGATGAATTTAAACCAG+AGG 0.661228 7_3:-80188999 Msa1128330:CDS
TGTCATCTAGGTGGAGACGA+TGG 0.665066 7_3:-80187909 Msa1128330:CDS
TGTTCAGAGTGTCATCTAGG+TGG 0.667853 7_3:-80187918 Msa1128330:CDS
CCAGCAATTAATTCAATGTG+GGG 0.670551 7_3:+80186679 None:intergenic
CAACTTTATCAGAGAGACGG+TGG 0.672641 7_3:-80187554 Msa1128330:CDS
GAAGGTAATTGGTACTGTGA+TGG 0.672974 7_3:-80187813 Msa1128330:CDS
TTGGGGAGAGAAGTACCTGA+AGG 0.674115 7_3:-80187831 Msa1128330:CDS
TGTGTGAGAACAGATGGTAA+AGG 0.674564 7_3:-80189587 None:intergenic
GAGGAGGAAGAAGAAACAAG+GGG 0.676574 7_3:-80188959 Msa1128330:CDS
AGCCTCGAGGAAGAGACAGA+GGG 0.680363 7_3:-80189281 Msa1128330:CDS
TGGTTCTGATGATTCCGATG+AGG 0.681336 7_3:-80189509 Msa1128330:CDS
AGAGGTAGGTGAAAATGATG+AGG 0.685918 7_3:-80189020 Msa1128330:CDS
TGGTTGAATCCTGAACCACT+GGG 0.690869 7_3:+80187256 None:intergenic
TCAAGAATCTGATTTAAGAG+CGG 0.691879 7_3:-80187751 Msa1128330:CDS
AGACGAAGAATTTAAACCGG+AGG 0.693269 7_3:-80188903 Msa1128330:CDS
CAGATCAAACATTGTCACTG+AGG 0.704891 7_3:-80187139 Msa1128330:CDS
ATAAGAATGAGCAATTCAAG+GGG 0.716344 7_3:-80187279 Msa1128330:CDS
ATATATCACAGAGTAGCATG+AGG 0.719343 7_3:+80187886 None:intergenic
GAATGTGTCTGATTGTCCAG+AGG 0.723141 7_3:-80189461 Msa1128330:CDS
AACACAATAAGTGTGTGCAG+GGG 0.725731 7_3:+80187857 None:intergenic
ACTCGAGCACAATACGAGTG+AGG 0.731655 7_3:-80186731 Msa1128330:CDS
CTAATGTAAGTAAAGCCTCG+AGG 0.731857 7_3:-80189294 Msa1128330:CDS
GAAAGAATGGAGGATCAACG+AGG 0.744731 7_3:-80188706 Msa1128330:CDS
ACACAAGAATGTCTTCACAG+TGG 0.768688 7_3:-80186576 Msa1128330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGATTTTACATGC+AGG - chr7_3:80188132-80188151 Msa1128330:CDS 20.0%
!! CTTCTATCATTTATATATCA+TGG - chr7_3:80189134-80189153 Msa1128330:CDS 20.0%
! TGACTAAATTTAATAGATCG+AGG - chr7_3:80186787-80186806 Msa1128330:CDS 25.0%
! GACTAAATTTAATAGATCGA+GGG - chr7_3:80186788-80186807 Msa1128330:CDS 25.0%
! AAATTCTTCGTCTTCATAAA+TGG + chr7_3:80187222-80187241 None:intergenic 25.0%
! CGCATTAAGAAGAAAAATAA+TGG - chr7_3:80187290-80187309 Msa1128330:CDS 25.0%
! ATAGTAAACTCATAATCAGA+TGG + chr7_3:80187590-80187609 None:intergenic 25.0%
! AGGAAAATAAAAGAAGAGTA+AGG - chr7_3:80187864-80187883 Msa1128330:CDS 25.0%
! GGAAAATAAAAGAAGAGTAA+GGG - chr7_3:80187865-80187884 Msa1128330:CDS 25.0%
! GAAAATAAAAGAAGAGTAAG+GGG - chr7_3:80187866-80187885 Msa1128330:CDS 25.0%
!!! AAATTTTGACCATTTGCTTA+TGG - chr7_3:80188078-80188097 Msa1128330:intron 25.0%
! TCATCATTCATTACATCATA+AGG - chr7_3:80189161-80189180 Msa1128330:CDS 25.0%
!!! TTACAGATTTCTAGTATCAT+AGG + chr7_3:80189221-80189240 None:intergenic 25.0%
! ATGATACTAGAAATCTGTAA+TGG - chr7_3:80189221-80189240 Msa1128330:CDS 25.0%
!!! TGTCTTTTATGTATTGATTC+AGG - chr7_3:80189318-80189337 Msa1128330:CDS 25.0%
! TACAAAAGAATCAAAACAAG+AGG + chr7_3:80189511-80189530 None:intergenic 25.0%
!!! TCTTGTTTTGATTCTTTTGT+AGG - chr7_3:80189510-80189529 Msa1128330:CDS 25.0%
!!! AGATGTGGTTAAAAGTATTT+TGG - chr7_3:80189533-80189552 Msa1128330:CDS 25.0%
AAAGAAAAACAATCATCCTC+TGG + chr7_3:80186690-80186709 None:intergenic 30.0%
!! AGAGGATGATTGTTTTTCTT+TGG - chr7_3:80186689-80186708 Msa1128330:CDS 30.0%
!! GATGATTGTTTTTCTTTGGA+TGG - chr7_3:80186693-80186712 Msa1128330:CDS 30.0%
GAAGAACAAGATGAAGAAAA+AGG - chr7_3:80186915-80186934 Msa1128330:intron 30.0%
! TTACAATGATGTTGATGAAG+AGG - chr7_3:80186992-80187011 Msa1128330:intron 30.0%
TGAAGACGAAGAATTTAAAC+CGG - chr7_3:80187226-80187245 Msa1128330:CDS 30.0%
AAAAATAATGGCACGAAGAT+GGG - chr7_3:80187302-80187321 Msa1128330:CDS 30.0%
!!! TGATGATGCAGATGATTTTT+TGG - chr7_3:80187460-80187479 Msa1128330:CDS 30.0%
AGTTGTGTGGAAATATAAGA+AGG - chr7_3:80187648-80187667 Msa1128330:CDS 30.0%
GAAATATAAGAAGGAACTTG+AGG - chr7_3:80187657-80187676 Msa1128330:CDS 30.0%
! TTTTTGCTTTGCTTGCATTA+TGG - chr7_3:80187913-80187932 Msa1128330:CDS 30.0%
ATTGCAAAACCATAAGCAAA+TGG + chr7_3:80188090-80188109 None:intergenic 30.0%
TAAATCAGATTCTTGAGCTT+GGG + chr7_3:80188377-80188396 None:intergenic 30.0%
TTAAATCAGATTCTTGAGCT+TGG + chr7_3:80188378-80188397 None:intergenic 30.0%
TCAAGAATCTGATTTAAGAG+CGG - chr7_3:80188381-80188400 Msa1128330:CDS 30.0%
ATACTTTCTCGTATATGAAC+AGG + chr7_3:80188436-80188455 None:intergenic 30.0%
! CTCATACATCTTTTAGTCAA+GGG - chr7_3:80188479-80188498 Msa1128330:CDS 30.0%
! CTTTCATCTTCTAGATTTTC+TGG - chr7_3:80188511-80188530 Msa1128330:CDS 30.0%
! ATTCAAGTTACTTACTGTAC+CGG + chr7_3:80188698-80188717 None:intergenic 30.0%
TGAATAGCCCTGAAATTAAT+AGG - chr7_3:80188713-80188732 Msa1128330:CDS 30.0%
GAATAGCCCTGAAATTAATA+GGG - chr7_3:80188714-80188733 Msa1128330:CDS 30.0%
TTGGTTCCCTATTAATTTCA+GGG + chr7_3:80188723-80188742 None:intergenic 30.0%
GTTCTTATATGTTGAGAACT+TGG + chr7_3:80188742-80188761 None:intergenic 30.0%
TTCTCAACATATAAGAACAC+AGG - chr7_3:80188744-80188763 Msa1128330:CDS 30.0%
!!! ATCCTATCACACATTTTTTG+AGG - chr7_3:80188777-80188796 Msa1128330:CDS 30.0%
!!! ACATTTTTTGAGGAGAGATT+AGG - chr7_3:80188787-80188806 Msa1128330:CDS 30.0%
CATAAGAATGAGCAATTCAA+GGG - chr7_3:80188852-80188871 Msa1128330:CDS 30.0%
ATAAGAATGAGCAATTCAAG+GGG - chr7_3:80188853-80188872 Msa1128330:CDS 30.0%
ACATCAACCTTATCAGATTA+TGG - chr7_3:80188949-80188968 Msa1128330:CDS 30.0%
! AGATAACTTGCACATTGTAA+AGG - chr7_3:80189044-80189063 Msa1128330:CDS 30.0%
!! CCATTACAGATTTCTAGTAA+TGG + chr7_3:80189193-80189212 None:intergenic 30.0%
CCATTACTAGAAATCTGTAA+TGG - chr7_3:80189190-80189209 Msa1128330:CDS 30.0%
! TCAACGAAGATTCTTTTCAT+AGG + chr7_3:80189252-80189271 None:intergenic 30.0%
! TTCAGGTTATAGTACTTTCA+AGG - chr7_3:80189335-80189354 Msa1128330:CDS 30.0%
ACCAGCAATTAATTCAATGT+GGG + chr7_3:80189457-80189476 None:intergenic 30.0%
GGACAAATGAGTATGATTAA+AGG - chr7_3:80189477-80189496 Msa1128330:CDS 30.0%
CAAACGTGATTTGAGAAAGA+GGG - chr7_3:80186584-80186603 Msa1128330:CDS 35.0%
! TTTTTCTTTGGATGGATGTG+CGG - chr7_3:80186701-80186720 Msa1128330:CDS 35.0%
GTTTATAGAAGACGAGGATT+CGG - chr7_3:80186743-80186762 Msa1128330:CDS 35.0%
TCTTCTTCTTCTTCTTCTTC+TGG + chr7_3:80186894-80186913 None:intergenic 35.0%
AGAGGAAGAAAAAGAAGAAG+TGG - chr7_3:80187076-80187095 Msa1128330:CDS 35.0%
AGAAAAAGAAGAAGTGGAAG+TGG - chr7_3:80187082-80187101 Msa1128330:CDS 35.0%
GGATGATGAATTTAAACCAG+AGG - chr7_3:80187133-80187152 Msa1128330:CDS 35.0%
GAAAAATAATGGCACGAAGA+TGG - chr7_3:80187301-80187320 Msa1128330:CDS 35.0%
!! AGAAGAAGGCTTTGAAGAAA+AGG - chr7_3:80187327-80187346 Msa1128330:CDS 35.0%
!! GAAGAAGGCTTTGAAGAAAA+GGG - chr7_3:80187328-80187347 Msa1128330:CDS 35.0%
TTTCGTCTTCTCTTTCTCTT+GGG + chr7_3:80187410-80187429 None:intergenic 35.0%
AGAAAGAGAAGACGAAAGAA+TGG - chr7_3:80187413-80187432 Msa1128330:CDS 35.0%
! CTTTCTGCTATTTGTTCTGA+TGG + chr7_3:80187498-80187517 None:intergenic 35.0%
! CTCTGAAGAAGAAAAAGAAC+AGG - chr7_3:80187610-80187629 Msa1128330:CDS 35.0%
TATATTTCCACACAACTCCA+CGG + chr7_3:80187645-80187664 None:intergenic 35.0%
TCTTCGAATGGAAAATGAAG+TGG - chr7_3:80187688-80187707 Msa1128330:CDS 35.0%
ATGAAGATCTACATCAGCAA+TGG - chr7_3:80187720-80187739 Msa1128330:CDS 35.0%
GAAAAGATAGAGGAATCTCA+AGG - chr7_3:80187767-80187786 Msa1128330:CDS 35.0%
AAAGGGTAAGGAAAAAGTAG+AGG - chr7_3:80187793-80187812 Msa1128330:CDS 35.0%
TTCAAATACCTGATCACGTT+CGG + chr7_3:80188044-80188063 None:intergenic 35.0%
ATGACACTCTGAACACATAA+CGG + chr7_3:80188209-80188228 None:intergenic 35.0%
ATATATCACAGAGTAGCATG+AGG + chr7_3:80188249-80188268 None:intergenic 35.0%
!! ACACACTTATTGTGTTGGTT+TGG - chr7_3:80188282-80188301 Msa1128330:intron 35.0%
!! CACACTTATTGTGTTGGTTT+GGG - chr7_3:80188283-80188302 Msa1128330:intron 35.0%
!! ACACTTATTGTGTTGGTTTG+GGG - chr7_3:80188284-80188303 Msa1128330:intron 35.0%
TTTAAAGATGCCAAAGCAAC+TGG + chr7_3:80188352-80188371 None:intergenic 35.0%
CCTTGACTAAAAGATGTATG+AGG + chr7_3:80188481-80188500 None:intergenic 35.0%
! CCTCATACATCTTTTAGTCA+AGG - chr7_3:80188478-80188497 Msa1128330:CDS 35.0%
! ACATCTTTTAGTCAAGGGTT+CGG - chr7_3:80188484-80188503 Msa1128330:CDS 35.0%
GCTACGTTCAATTGATAGAA+TGG - chr7_3:80188636-80188655 Msa1128330:CDS 35.0%
CTTGGTTCCCTATTAATTTC+AGG + chr7_3:80188724-80188743 None:intergenic 35.0%
CTCCTCAAAAAATGTGTGAT+AGG + chr7_3:80188782-80188801 None:intergenic 35.0%
ATCTCTCCATTTATGCAGAA+TGG - chr7_3:80188817-80188836 Msa1128330:CDS 35.0%
TTGCTCATTCTTATGGAGAA+GGG + chr7_3:80188847-80188866 None:intergenic 35.0%
ATTGCTCATTCTTATGGAGA+AGG + chr7_3:80188848-80188867 None:intergenic 35.0%
CCTTGAATTGCTCATTCTTA+TGG + chr7_3:80188854-80188873 None:intergenic 35.0%
CCATAAGAATGAGCAATTCA+AGG - chr7_3:80188851-80188870 Msa1128330:CDS 35.0%
! GATTCAACCATGTTTTCGAA+CGG - chr7_3:80188889-80188908 Msa1128330:CDS 35.0%
! ATTCAACCATGTTTTCGAAC+GGG - chr7_3:80188890-80188909 Msa1128330:CDS 35.0%
! GATTGGTCCATAATCTGATA+AGG + chr7_3:80188959-80188978 None:intergenic 35.0%
ATCTTCTTCTTTGACAGTAG+CGG + chr7_3:80189028-80189047 None:intergenic 35.0%
! ATTGTCTCAAGATGCTGATT+TGG - chr7_3:80189104-80189123 Msa1128330:CDS 35.0%
!! TTGTCTCAAGATGCTGATTT+GGG - chr7_3:80189105-80189124 Msa1128330:CDS 35.0%
CCAGCAATTAATTCAATGTG+GGG + chr7_3:80189456-80189475 None:intergenic 35.0%
CACCAGCAATTAATTCAATG+TGG + chr7_3:80189458-80189477 None:intergenic 35.0%
CACATTGAATTAATTGCTGG+TGG - chr7_3:80189456-80189475 Msa1128330:CDS 35.0%
! TGATTCTTTTGTAGGAGATG+TGG - chr7_3:80189518-80189537 Msa1128330:CDS 35.0%
GCAAACGTGATTTGAGAAAG+AGG - chr7_3:80186583-80186602 Msa1128330:CDS 40.0%
GTGATTTGAGAAAGAGGGTT+AGG - chr7_3:80186589-80186608 Msa1128330:CDS 40.0%
AGAAAGAGGGTTAGGTCAAA+GGG - chr7_3:80186597-80186616 Msa1128330:CDS 40.0%
TGATTCCGATGAGGATTATG+TGG - chr7_3:80186632-80186651 Msa1128330:CDS 40.0%
CGAAACCACATAATCCTCAT+CGG + chr7_3:80186640-80186659 None:intergenic 40.0%
CGATGAGGATTATGTGGTTT+CGG - chr7_3:80186638-80186657 Msa1128330:CDS 40.0%
!! TGATGGGTTTATAGAAGACG+AGG - chr7_3:80186737-80186756 Msa1128330:CDS 40.0%
AATAGATCGAGGGCTAAAAC+TGG - chr7_3:80186798-80186817 Msa1128330:intron 40.0%
CTAATGTAAGTAAAGCCTCG+AGG - chr7_3:80186838-80186857 Msa1128330:intron 40.0%
TGAAGAAAAAGGAGACGAAG+AGG - chr7_3:80186926-80186945 Msa1128330:intron 40.0%
AGAGGAAGAAGTAGAAGAAG+AGG - chr7_3:80186944-80186963 Msa1128330:intron 40.0%
! CAATGATGTTGATGAAGAGG+AGG - chr7_3:80186995-80187014 Msa1128330:intron 40.0%
AGAAGAAGTGGAAGTGGAAA+TGG - chr7_3:80187040-80187059 Msa1128330:CDS 40.0%
AGAGGTAGGTGAAAATGATG+AGG - chr7_3:80187112-80187131 Msa1128330:CDS 40.0%
TCTGTGAAATCTTCTTCCTC+TGG + chr7_3:80187152-80187171 None:intergenic 40.0%
GGAAGAAGATTTCACAGATG+AGG - chr7_3:80187154-80187173 Msa1128330:CDS 40.0%
AGAAGATTTCACAGATGAGG+AGG - chr7_3:80187157-80187176 Msa1128330:CDS 40.0%
ATGAGGAGGAAGAAGAAACA+AGG - chr7_3:80187171-80187190 Msa1128330:CDS 40.0%
TGAGGAGGAAGAAGAAACAA+GGG - chr7_3:80187172-80187191 Msa1128330:CDS 40.0%
AAGGGGCAGAAAGAAGAAAA+AGG - chr7_3:80187190-80187209 Msa1128330:CDS 40.0%
AGACGAAGAATTTAAACCGG+AGG - chr7_3:80187229-80187248 Msa1128330:CDS 40.0%
ATGAGGAGGAAGAAGAAACA+AGG - chr7_3:80187171-80187190 Msa1128330:CDS 40.0%
CTTTCGTCTTCTCTTTCTCT+TGG + chr7_3:80187411-80187430 None:intergenic 40.0%
AAGAGAAGACGAAAGAATGG+AGG - chr7_3:80187416-80187435 Msa1128330:CDS 40.0%
! TGCTATTTGTTCTGATGGCT+GGG + chr7_3:80187493-80187512 None:intergenic 40.0%
GAAAGAGATCAGTCCTGAAA+AGG - chr7_3:80187513-80187532 Msa1128330:CDS 40.0%
ATCAGTCCTGAAAAGGAGAA+GGG - chr7_3:80187520-80187539 Msa1128330:CDS 40.0%
ATCCTTGAAGATGCCAATTC+CGG - chr7_3:80187545-80187564 Msa1128330:CDS 40.0%
CGAATGGAAAATGAAGTGGT+TGG - chr7_3:80187692-80187711 Msa1128330:CDS 40.0%
GAAGGGTAAGGAAAAGATAG+AGG - chr7_3:80187757-80187776 Msa1128330:CDS 40.0%
AGAGGAATCTCAAGGAAGAA+AGG - chr7_3:80187775-80187794 Msa1128330:CDS 40.0%
GAGGAATCTCAAGGAAGAAA+GGG - chr7_3:80187776-80187795 Msa1128330:CDS 40.0%
ATCTCAAGGAAGAAAGGGTA+AGG - chr7_3:80187781-80187800 Msa1128330:CDS 40.0%
TTGCATTATGGAGTGGTCAA+AGG - chr7_3:80187925-80187944 Msa1128330:CDS 40.0%
GGAATCTCTGCTTACACAAA+GGG + chr7_3:80187964-80187983 None:intergenic 40.0%
TGGAATCTCTGCTTACACAA+AGG + chr7_3:80187965-80187984 None:intergenic 40.0%
TCAAATACCTGATCACGTTC+GGG + chr7_3:80188043-80188062 None:intergenic 40.0%
!! GAACACATAACGGACTCATA+TGG + chr7_3:80188199-80188218 None:intergenic 40.0%
! ATGTGTTCAGAGTGTCATCT+AGG - chr7_3:80188211-80188230 Msa1128330:intron 40.0%
AACACAATAAGTGTGTGCAG+GGG + chr7_3:80188278-80188297 None:intergenic 40.0%
CAACACAATAAGTGTGTGCA+GGG + chr7_3:80188279-80188298 None:intergenic 40.0%
!! GAGAAGTACCTGAAGGTAAT+TGG - chr7_3:80188308-80188327 Msa1128330:intron 40.0%
TCACAGTACCAATTACCTTC+AGG + chr7_3:80188319-80188338 None:intergenic 40.0%
GAAGGTAATTGGTACTGTGA+TGG - chr7_3:80188319-80188338 Msa1128330:CDS 40.0%
TCTCGTATATGAACAGGTGA+TGG + chr7_3:80188430-80188449 None:intergenic 40.0%
ATGTATGAGGTGAAGACATC+AGG + chr7_3:80188468-80188487 None:intergenic 40.0%
! CATCTTTTAGTCAAGGGTTC+GGG - chr7_3:80188485-80188504 Msa1128330:CDS 40.0%
CACCAACTTTATCAGAGAGA+CGG - chr7_3:80188575-80188594 Msa1128330:CDS 40.0%
TTTGTAGCTGCTGAACTTGA+CGG + chr7_3:80188609-80188628 None:intergenic 40.0%
GATAGAATGGCTTCTACAAC+TGG - chr7_3:80188649-80188668 Msa1128330:CDS 40.0%
TCTACAACTGGCAGAACTAT+CGG - chr7_3:80188661-80188680 Msa1128330:CDS 40.0%
CATATAAGAACACAGGACGT+AGG - chr7_3:80188751-80188770 Msa1128330:CDS 40.0%
TGCTCATTCTTATGGAGAAG+GGG + chr7_3:80188846-80188865 None:intergenic 40.0%
! AGCTATATGGCCTGGAATTT+TGG - chr7_3:80188924-80188943 Msa1128330:CDS 40.0%
! GCTATATGGCCTGGAATTTT+GGG - chr7_3:80188925-80188944 Msa1128330:CDS 40.0%
! CTATATGGCCTGGAATTTTG+GGG - chr7_3:80188926-80188945 Msa1128330:CDS 40.0%
CAGATCAAACATTGTCACTG+AGG - chr7_3:80188993-80189012 Msa1128330:CDS 40.0%
TCAAACATTGTCACTGAGGT+TGG - chr7_3:80188997-80189016 Msa1128330:CDS 40.0%
TCTTCTTCTTTGACAGTAGC+GGG + chr7_3:80189027-80189046 None:intergenic 40.0%
GTACTTTCAAGGACATTGCA+AGG - chr7_3:80189346-80189365 Msa1128330:CDS 40.0%
TAATTCAATGTGGGGACAGA+CGG + chr7_3:80189448-80189467 None:intergenic 40.0%
CCCCACATTGAATTAATTGC+TGG - chr7_3:80189453-80189472 Msa1128330:CDS 40.0%
ACACAAGAATGTCTTCACAG+TGG - chr7_3:80189556-80189575 Msa1128330:CDS 40.0%
TCTTCACAGTGGTTACGATT+AGG - chr7_3:80189567-80189586 Msa1128330:CDS 40.0%
GAGAAAGAGGGTTAGGTCAA+AGG - chr7_3:80186596-80186615 Msa1128330:CDS 45.0%
!! TGGTTCTGATGATTCCGATG+AGG - chr7_3:80186623-80186642 Msa1128330:CDS 45.0%
TATGTGGTTTCGGATGATGC+CGG - chr7_3:80186648-80186667 Msa1128330:CDS 45.0%
TGGACAATCAGACACATTCC+CGG + chr7_3:80186670-80186689 None:intergenic 45.0%
GAATGTGTCTGATTGTCCAG+AGG - chr7_3:80186671-80186690 Msa1128330:CDS 45.0%
!!! CGGCTGAGGATAGTTTTGAT+GGG - chr7_3:80186721-80186740 Msa1128330:CDS 45.0%
AGAAGACGAGGATTCGGAAA+AGG - chr7_3:80186749-80186768 Msa1128330:CDS 45.0%
CGGAAAAGGAGGTGATTCAA+CGG - chr7_3:80186763-80186782 Msa1128330:CDS 45.0%
GGAAAAGGAGGTGATTCAAC+GGG - chr7_3:80186764-80186783 Msa1128330:CDS 45.0%
GGAAGAAGTAGAAGAAGAGG+AGG - chr7_3:80186947-80186966 Msa1128330:intron 45.0%
AGAAGTAGAAGAAGAGGAGG+AGG - chr7_3:80186950-80186969 Msa1128330:intron 45.0%
! TGTTGATGAAGAGGAGGATG+AGG - chr7_3:80187001-80187020 Msa1128330:intron 45.0%
AGAGGAAGAGGAAGAAGAAG+TGG - chr7_3:80187028-80187047 Msa1128330:CDS 45.0%
AGAGGAAGAAGAAGTGGAAG+TGG - chr7_3:80187034-80187053 Msa1128330:CDS 45.0%
AGTGGAAGTGGAAATGGAAG+AGG - chr7_3:80187046-80187065 Msa1128330:CDS 45.0%
AGTGGAAATGGAAGAGGAAG+AGG - chr7_3:80187052-80187071 Msa1128330:CDS 45.0%
AATGGAAGAGGAAGAGGAAG+AGG - chr7_3:80187058-80187077 Msa1128330:CDS 45.0%
AGAAGAAGTGGAAGTGGAAG+TGG - chr7_3:80187088-80187107 Msa1128330:CDS 45.0%
GAGGAGGAAGAAGAAACAAG+GGG - chr7_3:80187173-80187192 Msa1128330:CDS 45.0%
TCTGTGTAATCTTCGTCCTC+CGG + chr7_3:80187248-80187267 None:intergenic 45.0%
GGACGAAGATTACACAGATG+AGG - chr7_3:80187250-80187269 Msa1128330:CDS 45.0%
CGAAGATTACACAGATGAGG+AGG - chr7_3:80187253-80187272 Msa1128330:CDS 45.0%
GTTTCTGCAACTTCTAGCAG+AGG - chr7_3:80187350-80187369 Msa1128330:CDS 45.0%
CTTCTAGCAGAGGTCGAAAA+AGG - chr7_3:80187360-80187379 Msa1128330:CDS 45.0%
GAAAGAATGGAGGATCAACG+AGG - chr7_3:80187426-80187445 Msa1128330:CDS 45.0%
! CTGCTATTTGTTCTGATGGC+TGG + chr7_3:80187494-80187513 None:intergenic 45.0%
GATCAGTCCTGAAAAGGAGA+AGG - chr7_3:80187519-80187538 Msa1128330:CDS 45.0%
! GGATAACCCTTCTCCTTTTC+AGG + chr7_3:80187529-80187548 None:intergenic 45.0%
AGTAGAGGACTTGAAGAGTG+AGG - chr7_3:80187808-80187827 Msa1128330:CDS 45.0%
GTGTGGAATTTGTCTGTCTG+AGG - chr7_3:80187844-80187863 Msa1128330:CDS 45.0%
GCTTTGCTTGCATTATGGAG+TGG - chr7_3:80187918-80187937 Msa1128330:CDS 45.0%
! GTGCAGGCTTACTGATTGTT+TGG + chr7_3:80187985-80188004 None:intergenic 45.0%
ACGATCAACAACAGCAGAAG+AGG - chr7_3:80188003-80188022 Msa1128330:intron 45.0%
ATCAACAACAGCAGAAGAGG+CGG - chr7_3:80188006-80188025 Msa1128330:intron 45.0%
AGCCAACTGAAGAAGAACTC+AGG - chr7_3:80188161-80188180 Msa1128330:intron 45.0%
CTCCTGAGTTCTTCTTCAGT+TGG + chr7_3:80188166-80188185 None:intergenic 45.0%
! TGTTCAGAGTGTCATCTAGG+TGG - chr7_3:80188214-80188233 Msa1128330:intron 45.0%
CCAACACAATAAGTGTGTGC+AGG + chr7_3:80188280-80188299 None:intergenic 45.0%
CCTGCACACACTTATTGTGT+TGG - chr7_3:80188277-80188296 Msa1128330:intron 45.0%
TGGTTGTAGACCAGTTGCTT+TGG - chr7_3:80188339-80188358 Msa1128330:CDS 45.0%
! TATATGAACAGGTGATGGCC+GGG + chr7_3:80188425-80188444 None:intergenic 45.0%
! GTATATGAACAGGTGATGGC+CGG + chr7_3:80188426-80188445 None:intergenic 45.0%
!!! TTTTCTGGCAGAAGTACCGA+AGG - chr7_3:80188526-80188545 Msa1128330:CDS 45.0%
CACCGTCTCTCTGATAAAGT+TGG + chr7_3:80188580-80188599 None:intergenic 45.0%
CAACTTTATCAGAGAGACGG+TGG - chr7_3:80188578-80188597 Msa1128330:CDS 45.0%
! ACTATCGGTGTTTCAGCTAC+CGG - chr7_3:80188676-80188695 Msa1128330:CDS 45.0%
GGGTCTCCATTCTGCATAAA+TGG + chr7_3:80188826-80188845 None:intergenic 45.0%
TGGTTGAATCCTGAACCACT+GGG + chr7_3:80188879-80188898 None:intergenic 45.0%
ATGGTTGAATCCTGAACCAC+TGG + chr7_3:80188880-80188899 None:intergenic 45.0%
GTTGATGTCCCCAAAATTCC+AGG + chr7_3:80188937-80188956 None:intergenic 45.0%
TGTTTGATCTGCTGCTGCAT+GGG + chr7_3:80188984-80189003 None:intergenic 45.0%
ATGTTTGATCTGCTGCTGCA+TGG + chr7_3:80188985-80189004 None:intergenic 45.0%
AAAGGAGCGATTGCAGTCAA+TGG - chr7_3:80189062-80189081 Msa1128330:CDS 45.0%
ATGTGGTTTCGGATGATGCC+GGG - chr7_3:80186649-80186668 Msa1128330:CDS 50.0%
!!! GCGGCTGAGGATAGTTTTGA+TGG - chr7_3:80186720-80186739 Msa1128330:CDS 50.0%
AGACGAGGATTCGGAAAAGG+AGG - chr7_3:80186752-80186771 Msa1128330:CDS 50.0%
CGAGGGCTAAAACTGGTGTA+AGG - chr7_3:80186805-80186824 Msa1128330:intron 50.0%
! AAACTGGTGTAAGGCGTCAG+CGG - chr7_3:80186814-80186833 Msa1128330:intron 50.0%
TGATGAAGAGGAGGATGAGG+AGG - chr7_3:80187004-80187023 Msa1128330:intron 50.0%
AGTGGAAGTGGAAGTGGAAG+AGG - chr7_3:80187094-80187113 Msa1128330:CDS 50.0%
GAAGTGGAAGTGGAAGAGGT+AGG - chr7_3:80187098-80187117 Msa1128330:CDS 50.0%
CACGAAGATGGGCAAGAAGA+AGG - chr7_3:80187313-80187332 Msa1128330:CDS 50.0%
AGCAGAGGTCGAAAAAGGAG+TGG - chr7_3:80187365-80187384 Msa1128330:CDS 50.0%
AGCCGGAATTGGCATCTTCA+AGG + chr7_3:80187550-80187569 None:intergenic 50.0%
TCTAGACTCGCAATCTGAGC+CGG + chr7_3:80187567-80187586 None:intergenic 50.0%
GAGGAGAGCTTCTCTTCGAA+TGG - chr7_3:80187676-80187695 Msa1128330:CDS 50.0%
! TTTTCCTTACCCTTCCGTGC+TGG + chr7_3:80187752-80187771 None:intergenic 50.0%
AGAGGACTTGAAGAGTGAGG+TGG - chr7_3:80187811-80187830 Msa1128330:CDS 50.0%
GAGGACTTGAAGAGTGAGGT+GGG - chr7_3:80187812-80187831 Msa1128330:CDS 50.0%
GAAGAGTGAGGTGGGAAAAC+AGG - chr7_3:80187820-80187839 Msa1128330:CDS 50.0%
TCTGCTGTTGTTGATCGTGC+AGG + chr7_3:80188001-80188020 None:intergenic 50.0%
TGTCATCTAGGTGGAGACGA+TGG - chr7_3:80188223-80188242 Msa1128330:intron 50.0%
!! TTGGGGAGAGAAGTACCTGA+AGG - chr7_3:80188301-80188320 Msa1128330:intron 50.0%
GAGGTGAAGACATCAGGTTC+AGG + chr7_3:80188462-80188481 None:intergenic 50.0%
AGACATCGGAGAAGCTCCTT+CGG + chr7_3:80188545-80188564 None:intergenic 50.0%
GGCCTGTGAATGCAGCTATA+TGG - chr7_3:80188911-80188930 Msa1128330:CDS 50.0%
GGCCATATAGCTGCATTCAC+AGG + chr7_3:80188916-80188935 None:intergenic 50.0%
GTGAATGCAGCTATATGGCC+TGG - chr7_3:80188916-80188935 Msa1128330:CDS 50.0%
CATACCATACTCGCTGCTTG+TGG - chr7_3:80189378-80189397 Msa1128330:CDS 50.0%
ACTCGAGCACAATACGAGTG+AGG - chr7_3:80189401-80189420 Msa1128330:CDS 50.0%
AGGGTTAGGTCAAAGGGCAG+TGG - chr7_3:80186603-80186622 Msa1128330:CDS 55.0%
TTTGGATGGATGTGCGGCTG+AGG - chr7_3:80186707-80186726 Msa1128330:CDS 55.0%
AAGCCTCGAGGAAGAGACAG+AGG - chr7_3:80186850-80186869 Msa1128330:intron 55.0%
AGCCTCGAGGAAGAGACAGA+GGG - chr7_3:80186851-80186870 Msa1128330:intron 55.0%
AACCCTCTGTCTCTTCCTCG+AGG + chr7_3:80186856-80186875 None:intergenic 55.0%
AGAGGAGGATGAGGAGGAAG+AGG - chr7_3:80187010-80187029 Msa1128330:intron 55.0%
GGATGAGGAGGAAGAGGAAG+AGG - chr7_3:80187016-80187035 Msa1128330:intron 55.0%
CTCGCAATCTGAGCCGGAAT+TGG + chr7_3:80187561-80187580 None:intergenic 55.0%
AGAACAGGTGAGAGAAGCCG+TGG - chr7_3:80187625-80187644 Msa1128330:CDS 55.0%
AGAGAAGCCGTGGAGTTGTG+TGG - chr7_3:80187635-80187654 Msa1128330:CDS 55.0%
AGCAATGGAAGCCTCCAGCA+CGG - chr7_3:80187735-80187754 Msa1128330:CDS 55.0%
GAGGTGGGAAAACAGGTGTG+TGG - chr7_3:80187827-80187846 Msa1128330:CDS 55.0%
ACAAGTGCCCGAACGTGATC+AGG - chr7_3:80188033-80188052 Msa1128330:intron 55.0%
CAACTCAAAGCCTGCCTTCC+CGG - chr7_3:80188404-80188423 Msa1128330:CDS 55.0%
GAAGGAGCTTCTCCGATGTC+TGG - chr7_3:80188544-80188563 Msa1128330:CDS 55.0%
CTTCTCCGATGTCTGGAGGT+GGG - chr7_3:80188551-80188570 Msa1128330:CDS 55.0%
TTCTCCGATGTCTGGAGGTG+GGG - chr7_3:80188552-80188571 Msa1128330:CDS 55.0%
CACAGGCCCGTTCGAAAACA+TGG + chr7_3:80188899-80188918 None:intergenic 55.0%
TTGATCTGCTGCTGCATGGG+TGG + chr7_3:80188981-80189000 None:intergenic 55.0%
GAGTCCACAAGCAGCGAGTA+TGG + chr7_3:80189385-80189404 None:intergenic 55.0%
TCAATGTGGGGACAGACGGA+TGG + chr7_3:80189444-80189463 None:intergenic 55.0%
ATGGAAGCCTCCAGCACGGA+AGG - chr7_3:80187739-80187758 Msa1128330:CDS 60.0%
TGGAAGCCTCCAGCACGGAA+GGG - chr7_3:80187740-80187759 Msa1128330:CDS 60.0%
TCCTTACCCTTCCGTGCTGG+AGG + chr7_3:80187749-80187768 None:intergenic 60.0%
! TGAACAGGTGATGGCCGGGA+AGG + chr7_3:80188421-80188440 None:intergenic 60.0%
GGAGCTTCTCCGATGTCTGG+AGG - chr7_3:80188547-80188566 Msa1128330:CDS 60.0%
GCTTCTCCGATGTCTGGAGG+TGG - chr7_3:80188550-80188569 Msa1128330:CDS 60.0%
GAGCAATTCAAGGGGCCCAG+TGG - chr7_3:80188861-80188880 Msa1128330:CDS 60.0%
TTCAAGGGGCCCAGTGGTTC+AGG - chr7_3:80188867-80188886 Msa1128330:CDS 60.0%
CTGCTGCTGCATGGGTGGAT+TGG + chr7_3:80188976-80188995 None:intergenic 60.0%
ATGTGGGGACAGACGGATGG+TGG + chr7_3:80189441-80189460 None:intergenic 60.0%
GCCTCCAGCACGGAAGGGTA+AGG - chr7_3:80187745-80187764 Msa1128330:CDS 65.0%
GGTGCCCCACCTCCAGACAT+CGG + chr7_3:80188559-80188578 None:intergenic 65.0%
! TGGGGACAGACGGATGGTGG+AGG + chr7_3:80189438-80189457 None:intergenic 65.0%
! CAGGTGATGGCCGGGAAGGC+AGG + chr7_3:80188417-80188436 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 80186558 80189596 80186558 ID=Msa1128330;Name=Msa1128330
chr7_3 mRNA 80186558 80189596 80186558 ID=Msa1128330-mRNA-1;Parent=Msa1128330;Name=Msa1128330-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|863
chr7_3 exon 80188313 80189596 80188313 ID=Msa1128330-mRNA-1:exon:22911;Parent=Msa1128330-mRNA-1
chr7_3 exon 80188100 80188177 80188100 ID=Msa1128330-mRNA-1:exon:22910;Parent=Msa1128330-mRNA-1
chr7_3 exon 80187028 80188000 80187028 ID=Msa1128330-mRNA-1:exon:22909;Parent=Msa1128330-mRNA-1
chr7_3 exon 80186558 80186814 80186558 ID=Msa1128330-mRNA-1:exon:22908;Parent=Msa1128330-mRNA-1
chr7_3 CDS 80188313 80189596 80188313 ID=Msa1128330-mRNA-1:cds;Parent=Msa1128330-mRNA-1
chr7_3 CDS 80188100 80188177 80188100 ID=Msa1128330-mRNA-1:cds;Parent=Msa1128330-mRNA-1
chr7_3 CDS 80187028 80188000 80187028 ID=Msa1128330-mRNA-1:cds;Parent=Msa1128330-mRNA-1
chr7_3 CDS 80186558 80186814 80186558 ID=Msa1128330-mRNA-1:cds;Parent=Msa1128330-mRNA-1
Gene Sequence

>Msa1128330

ATGGTAAAGGTAAGAAAGGTTAGTAGCAAACGTGATTTGAGAAAGAGGGTTAGGTCAAAGGGCAGTGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCCGGGAATGTGTCTGATTGTCCAGAGGATGATTGTTTTTCTTTGGATGGATGTGCGGCTGAGGATAGTTTTGATGGGTTTATAGAAGACGAGGATTCGGAAAAGGAGGTGATTCAACGGGTGACTAAATTTAATAGATCGAGGGCTAAAACTGGTGTAAGGCGTCAGCGGACTAATGTAAGTAAAGCCTCGAGGAAGAGACAGAGGGTTACTTATGCAGAACAACCAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGATGAAGAAAAAGGAGACGAAGAGGAAGAAGTAGAAGAAGAGGAGGAGGAAGAAGAAGATGATGATGATTACAATGATGTTGATGAAGAGGAGGATGAGGAGGAAGAGGAAGAGGAAGAAGAAGTGGAAGTGGAAATGGAAGAGGAAGAGGAAGAGGAAGAAAAAGAAGAAGTGGAAGTGGAAGTGGAAGAGGTAGGTGAAAATGATGAGGATGATGAATTTAAACCAGAGGAAGAAGATTTCACAGATGAGGAGGAAGAAGAAACAAGGGGCAGAAAGAAGAAAAAGGATAATTCCATTTATGAAGACGAAGAATTTAAACCGGAGGACGAAGATTACACAGATGAGGAGGAAGAAGAAACAAGGCGCATTAAGAAGAAAAATAATGGCACGAAGATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGACGAAAGAATGGAGGATCAACGAGGAAAGTACAGTGTGATGATGCAGATGATTTTTTGGATAATGTCCCAGCCATCAGAACAAATAGCAGAAAGAGATCAGTCCTGAAAAGGAGAAGGGTTATCCTTGAAGATGCCAATTCCGGCTCAGATTGCGAGTCTAGACCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCGTGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGGAAAATGAAGTGGTTGGACTATATGAAGATCTACATCAGCAATGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGACTTGAAGAGTGAGGTGGGAAAACAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGAAGAGGCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTCCGTTATGTGTTCAGAGTGTCATCTAGGTGGAGACGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGGCAACTCAAAGCCTGCCTTCCCGGCCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACCTGATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTACCGAAGGAGCTTCTCCGATGTCTGGAGGTGGGGCACCAACTTTATCAGAGAGACGGTGGATACACCGTCAAGTTCAGCAGCTACAAATTCAGCAGCTACGTTCAATTGATAGAATGGCTTCTACAACTGGCAGAACTATCGGTGTTTCAGCTACCGGTACAGTAAGTAACTTGAATAGCCCTGAAATTAATAGGGAACCAAGTTCTCAACATATAAGAACACAGGACGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTTATGCAGAATGGAGACCCCTTCTCCATAAGAATGAGCAATTCAAGGGGCCCAGTGGTTCAGGATTCAACCATGTTTTCGAACGGGCCTGTGAATGCAGCTATATGGCCTGGAATTTTGGGGACATCAACCTTATCAGATTATGGACCAATCCACCCATGCAGCAGCAGATCAAACATTGTCACTGAGGTTGGTATGCCCGCTACTGTCAAAGAAGAAGATAACTTGCACATTGTAAAGGAGCGATTGCAGTCAATGGTTAAAAGTCATCTGAAGAGATTGTCTCAAGATGCTGATTTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTCGCTGCTTGTGGACTCGAGCACAATACGAGTGAGGTTTGTACTGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAATGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGTATTTTGGACACAAGAATGTCTTCACAGTGGTTACGATTAGGACTTTAG

Protein sequence

>Msa1128330

MVKVRKVSSKRDLRKRVRSKGSGSDDSDEDYVVSDDAGNVSDCPEDDCFSLDGCAAEDSFDGFIEDEDSEKEVIQRVTKFNRSRAKTGVRRQRTNVSKASRKRQRVTYAEQPEEEEEEEEEQDEEKGDEEEEVEEEEEEEEDDDDYNDVDEEEDEEEEEEEEEVEVEMEEEEEEEEKEEVEVEVEEVGENDEDDEFKPEEEDFTDEEEEETRGRKKKKDNSIYEDEEFKPEDEDYTDEEEEETRRIKKKNNGTKMGKKKALKKRVSATSSRGRKRSGSRVSKKPKRKRRRKNGGSTRKVQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQVREAVELCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRWIHRQVQQLQIQQLRSIDRMASTTGRTIGVSATGTVSNLNSPEINREPSSQHIRTQDVGTSYHTFFEERLGNNISPFMQNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPGILGTSTLSDYGPIHPCSSRSNIVTEVGMPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAACGLEHNTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDVVKSILDTRMSSQWLRLGL*