AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1209670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209670 MtrunA17_Chr4g0058841 91.919 198 1 1 1 198 1 183 2.46e-129 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209670 AT5G58060.1 81.313 198 22 1 1 198 1 183 1.49e-112 324
Msa1209670 AT5G58060.2 71.818 220 25 2 1 198 1 205 2.76e-103 301
Msa1209670 AT5G58180.1 70.000 200 41 3 1 198 1 183 1.03e-90 269
Msa1209670 AT5G58180.2 70.000 200 41 3 1 198 1 183 1.03e-90 269

Find 96 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTCGCTGCCTCGCTTTA+TGG 0.157606 8_1:-68275924 None:intergenic
ACTTTGTGCAGTGGGATTTA+TGG 0.204222 8_1:+68276769 Msa1209670:CDS
CCTCTACACAAATCTGTTAA+AGG 0.222201 8_1:+68281394 Msa1209670:CDS
TTATTTATTTATATTCAAAA+TGG 0.247012 8_1:+68275807 Msa1209670:five_prime_UTR
TCTGTTAAAGGAAGGAATTT+TGG 0.255483 8_1:+68281406 Msa1209670:CDS
CGTGAGAGCTTCATTCAAAT+AGG 0.274319 8_1:-68278148 None:intergenic
GATGAATATATTAAAAGTTT+TGG 0.306961 8_1:+68278081 Msa1209670:CDS
TAAATGCCTCTGCATTATAT+TGG 0.315211 8_1:+68278185 Msa1209670:CDS
AGCATCTCAAACAAGGTTAA+AGG 0.324561 8_1:-68282073 None:intergenic
TGTCACCAACATTGATTATC+AGG 0.343112 8_1:+68280539 Msa1209670:CDS
CCCGTCTGCAATACATATAT+CGG 0.345240 8_1:-68282002 None:intergenic
AGGTGGTATTGATAGGTTTC+TGG 0.348265 8_1:-68280471 None:intergenic
CATTCTAAGTTAATTTGTAT+TGG 0.355506 8_1:+68282145 Msa1209670:three_prime_UTR
CAATACAAATTAACTTAGAA+TGG 0.382576 8_1:-68282144 None:intergenic
GTGAGAGCTTCATTCAAATA+GGG 0.385021 8_1:-68278147 None:intergenic
CGCAGTCGGGGTGTGTGTTA+AGG 0.393039 8_1:-68276034 None:intergenic
TGAATCATGGAGAAGCATTC+AGG 0.395335 8_1:+68278104 Msa1209670:CDS
TTCAGGCAGGTGGTATTGAT+AGG 0.400183 8_1:-68280478 None:intergenic
AGCAACTTATCAGCCTCTGC+AGG 0.407447 8_1:-68278357 None:intergenic
TGCCAACATGGTAAGACCTT+TGG 0.408113 8_1:-68282038 None:intergenic
GAAATTTGTTACTGTGTTTG+TGG 0.408611 8_1:+68281360 Msa1209670:CDS
TGAACAGATGTTCTACAAAC+AGG 0.421557 8_1:+68281810 Msa1209670:intron
TCTTGAAATGCAGTGCTTCA+AGG 0.424613 8_1:+68280506 Msa1209670:CDS
TATAATTATATGAGCTTACT+TGG 0.424674 8_1:+68282204 Msa1209670:three_prime_UTR
AACAATGAACTCTTTAACGC+TGG 0.424776 8_1:-68276244 None:intergenic
TATTTATTTATATTCAAAAT+GGG 0.425105 8_1:+68275808 Msa1209670:five_prime_UTR
TGAAGCTCTCACGAAATTCC+AGG 0.438362 8_1:+68278158 Msa1209670:CDS
AGAGAAAACGCACTACGAAC+TGG 0.440582 8_1:-68276803 None:intergenic
GTGCATGCTTACAACAGAAA+TGG 0.441935 8_1:+68276746 Msa1209670:CDS
TGTTGTGATTCGCACGCAGT+CGG 0.446595 8_1:-68276048 None:intergenic
GTTGTGATTCGCACGCAGTC+GGG 0.447303 8_1:-68276047 None:intergenic
AACAGCATCAATGTCGGAAC+AGG 0.447730 8_1:-68281907 None:intergenic
TTGTTTCGTCCAACTCCCTC+TGG 0.449194 8_1:-68278386 None:intergenic
CGTAGCTAATCGTACTCCTC+AGG 0.449938 8_1:+68276281 Msa1209670:CDS
ATGCAGTGCTTCAAGGGACT+TGG 0.461133 8_1:+68280513 Msa1209670:CDS
TGCAGAGGCATTTACATGCC+TGG 0.462408 8_1:-68278176 None:intergenic
CCGACATTGATGCTGTTGGA+TGG 0.476987 8_1:+68281913 Msa1209670:CDS
TTCTGGAAAGTATTATTTCG+CGG 0.483291 8_1:-68276088 None:intergenic
CGCTGCCTCGCTTTATGGTG+AGG 0.486166 8_1:-68275919 None:intergenic
ATCAATTGAGCGAAGTTTGA+GGG 0.486362 8_1:+68275749 None:intergenic
TATATGAGCTTACTTGGAAG+TGG 0.490116 8_1:+68282210 Msa1209670:three_prime_UTR
TCGTGCAAGCACACTATCAA+TGG 0.491767 8_1:-68279469 None:intergenic
CGACATTGATGCTGTTGGAT+GGG 0.492188 8_1:+68281914 Msa1209670:CDS
TGATTTGAGTGCAGCATCGC+AGG 0.499499 8_1:+68279527 Msa1209670:CDS
CAATATTGTACAACACTGGT+TGG 0.502632 8_1:-68281842 None:intergenic
GACATTGATGCTGTTGGATG+GGG 0.506073 8_1:+68281915 Msa1209670:CDS
AATGAAGATCACGGCTCTGT+TGG 0.506379 8_1:+68276137 Msa1209670:exon
CTTGAAATGCAGTGCTTCAA+GGG 0.511855 8_1:+68280507 Msa1209670:CDS
CACCGGCGATGGTTCAGAAT+CGG 0.512387 8_1:+68276170 Msa1209670:CDS
GGGTTTCTGAGAGAAGGAAC+AGG 0.515754 8_1:+68281427 Msa1209670:CDS
CCGTCTGCAATACATATATC+GGG 0.521521 8_1:-68282001 None:intergenic
GCTTGCACGAGGAGAGAAGC+TGG 0.527117 8_1:+68279482 Msa1209670:CDS
TAAGCTCATATAATTATAGC+AGG 0.532245 8_1:-68282199 None:intergenic
TGTTCCGACATTGATGCTGT+TGG 0.536186 8_1:+68281909 Msa1209670:CDS
CCTTTAACAGATTTGTGTAG+AGG 0.540105 8_1:-68281394 None:intergenic
CCCGATATATGTATTGCAGA+CGG 0.540848 8_1:+68282001 Msa1209670:three_prime_UTR
TAAAGCGAGGCAGCGAGCAT+TGG 0.541385 8_1:+68275927 Msa1209670:five_prime_UTR
AGAAATGGACTTTGTGCAGT+GGG 0.544952 8_1:+68276761 Msa1209670:CDS
TATCAATTGAGCGAAGTTTG+AGG 0.554251 8_1:+68275748 None:intergenic
TGATGCGGAAGCGTGTGTGC+TGG 0.555637 8_1:-68275974 None:intergenic
CAGAAATGGACTTTGTGCAG+TGG 0.556323 8_1:+68276760 Msa1209670:CDS
AGAATGTTAATTTGCCAACA+TGG 0.557639 8_1:-68282050 None:intergenic
GCTGCCTCGCTTTATGGTGA+GGG 0.557648 8_1:-68275918 None:intergenic
GCTTCAGATGTGAGTCACTT+CGG 0.561337 8_1:+68276207 Msa1209670:CDS
AGCCAAAGGTCTTACCATGT+TGG 0.563738 8_1:+68282036 Msa1209670:three_prime_UTR
GCTGAAAATCCAGAGGGAGT+TGG 0.565538 8_1:+68278377 Msa1209670:CDS
CCGATATATGTATTGCAGAC+GGG 0.568136 8_1:+68282002 Msa1209670:three_prime_UTR
TACACAAATCTGTTAAAGGA+AGG 0.570658 8_1:+68281398 Msa1209670:CDS
GTGCTAAAATCCACCGGCGA+TGG 0.570937 8_1:+68276159 Msa1209670:CDS
TTGTGATTCGCACGCAGTCG+GGG 0.577455 8_1:-68276046 None:intergenic
CATAGTAAGCATCTCAAACA+AGG 0.580832 8_1:-68282080 None:intergenic
CACCGATTCTGAACCATCGC+CGG 0.582685 8_1:-68276172 None:intergenic
GCTTCATTCAAATAGGGCCA+TGG 0.584327 8_1:-68278141 None:intergenic
CTTACAATATTGTACAACAC+TGG 0.593682 8_1:-68281846 None:intergenic
TCGGGGTGTGTGTTAAGGAA+AGG 0.593960 8_1:-68276029 None:intergenic
GTAGCTAATCGTACTCCTCA+GGG 0.612475 8_1:+68276282 Msa1209670:CDS
CGATTCTGAACCATCGCCGG+TGG 0.619269 8_1:-68276169 None:intergenic
AAATCTCCAGGACCCTGCAG+AGG 0.620458 8_1:+68278344 Msa1209670:intron
CTGAGGAGTACGATTAGCTA+CGG 0.622967 8_1:-68276280 None:intergenic
CGTCAATCTGTTCAGCACGA+AGG 0.627219 8_1:+68276309 Msa1209670:CDS
CTGTTGGTGCTAAAATCCAC+CGG 0.630376 8_1:+68276153 Msa1209670:CDS
GTGTTAAGGAAAGGACTGAA+TGG 0.630493 8_1:-68276020 None:intergenic
GCAACTTATCAGCCTCTGCA+GGG 0.635798 8_1:-68278356 None:intergenic
CTAAAGCCAATATAATGCAG+AGG 0.636268 8_1:-68278191 None:intergenic
AGCTACCTGATAATCAATGT+TGG 0.644611 8_1:-68280544 None:intergenic
CCATCCAACAGCATCAATGT+CGG 0.647071 8_1:-68281913 None:intergenic
ATTGATAGTGTGCTTGCACG+AGG 0.650465 8_1:+68279471 Msa1209670:CDS
ACGAGCTCGCATAGTACTGA+CGG 0.659538 8_1:-68281878 None:intergenic
ACAGATTGACGCTGACCCTG+AGG 0.664459 8_1:-68276297 None:intergenic
TAAGTTGCTGAAAATCCAGA+GGG 0.671975 8_1:+68278371 Msa1209670:CDS
GGGAACGAAATATTAGCCAA+AGG 0.680490 8_1:+68282022 Msa1209670:three_prime_UTR
ATAAGTTGCTGAAAATCCAG+AGG 0.687647 8_1:+68278370 Msa1209670:CDS
ACTACCCTCACCATAAAGCG+AGG 0.711857 8_1:+68275914 Msa1209670:five_prime_UTR
AGGCAGACAGTACTGAACCA+TGG 0.712623 8_1:+68278124 Msa1209670:CDS
ATATTTCAAAAGTTGACACG+AGG 0.723068 8_1:-68282248 None:intergenic
GTGCTGGAAAGATGAAACTG+CGG 0.783321 8_1:-68275958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATATTATTTTATAAA+AGG - chr8_1:68275783-68275802 None:intergenic 0.0%
!!! CTTATTAGTAATTTAATTTA+TGG + chr8_1:68277458-68277477 Msa1209670:intron 10.0%
!!! ATCATTGATTTTTTTTTTTT+TGG + chr8_1:68281626-68281645 Msa1209670:intron 10.0%
!! TAATAAACATTGTAATAGAA+AGG + chr8_1:68276522-68276541 Msa1209670:intron 15.0%
!!! TACTAATAAGACATTATTTT+AGG - chr8_1:68277448-68277467 None:intergenic 15.0%
!! AACAGTTAAAATCTAAAAAT+TGG - chr8_1:68277612-68277631 None:intergenic 15.0%
!!! AATTTTTAGATTTTAACTGT+TGG + chr8_1:68277611-68277630 Msa1209670:intron 15.0%
!!! ATTTTTAGATTTTAACTGTT+GGG + chr8_1:68277612-68277631 Msa1209670:intron 15.0%
!!! GATGAATATATTAAAAGTTT+TGG + chr8_1:68278081-68278100 Msa1209670:CDS 15.0%
!!! ATCTTGATTTAGTAATTTTA+TGG + chr8_1:68278842-68278861 Msa1209670:intron 15.0%
!! AACAAATTTCAATTTCTATA+CGG - chr8_1:68280711-68280730 None:intergenic 15.0%
!! TAATTATGAAAAATGCTATT+TGG + chr8_1:68280837-68280856 Msa1209670:intron 15.0%
!!! AATTATGAAAAATGCTATTT+GGG + chr8_1:68280838-68280857 Msa1209670:intron 15.0%
!!! TATGTTAATTAATTTTCATG+CGG - chr8_1:68281301-68281320 None:intergenic 15.0%
!!! ATTGATTTTTTTTTTTTTGG+TGG + chr8_1:68281629-68281648 Msa1209670:intron 15.0%
!!! TCATTTTTTTCTTCTTCTTT+CGG - chr8_1:68276122-68276141 None:intergenic 20.0%
!! TGATTCGCATAAATTTAATT+CGG - chr8_1:68276396-68276415 None:intergenic 20.0%
!!! AGGATTATTGATTTGATATA+TGG + chr8_1:68276542-68276561 Msa1209670:intron 20.0%
!!! TCATTTTCTTATAATACTAC+TGG - chr8_1:68276591-68276610 None:intergenic 20.0%
!!! TTTTTTATTTGTAGAGTACA+AGG + chr8_1:68276724-68276743 Msa1209670:intron 20.0%
!! TGTTGAAATATTTAATGATG+TGG - chr8_1:68277250-68277269 None:intergenic 20.0%
!!! TTTTTAGATTTTAACTGTTG+GGG + chr8_1:68277613-68277632 Msa1209670:intron 20.0%
!! TTAATCCAACATATTCATAT+TGG - chr8_1:68277679-68277698 None:intergenic 20.0%
!! AATTGTTTCAATGATTTCAT+TGG - chr8_1:68277710-68277729 None:intergenic 20.0%
!! AATGAAATCATTGAAACAAT+TGG + chr8_1:68277709-68277728 Msa1209670:intron 20.0%
!! AACCAATGATATATTACATA+CGG - chr8_1:68277815-68277834 None:intergenic 20.0%
!!! TATTTAATTGGTTTACTAGA+TGG + chr8_1:68278029-68278048 Msa1209670:intron 20.0%
!! TACTTAAGTTAACAATGATA+TGG + chr8_1:68278494-68278513 Msa1209670:intron 20.0%
!!! AATTTTGTTTGTTTGAGATT+CGG + chr8_1:68278537-68278556 Msa1209670:intron 20.0%
!! CTTATTAATGTACATATACT+TGG + chr8_1:68278751-68278770 Msa1209670:intron 20.0%
!! TAAAAAGAAACACAAACATA+TGG - chr8_1:68278777-68278796 None:intergenic 20.0%
!! TGGTCATATTATACATAATT+TGG + chr8_1:68278817-68278836 Msa1209670:intron 20.0%
!! TGGATTAATCAAGTAAAAAT+GGG - chr8_1:68278919-68278938 None:intergenic 20.0%
!!! ATTTTTACTTGATTAATCCA+GGG + chr8_1:68278919-68278938 Msa1209670:intron 20.0%
!! AATTTAGAAAAATGAAGGTA+CGG - chr8_1:68279260-68279279 None:intergenic 20.0%
!! TGACAAATTTAGAAAAATGA+AGG - chr8_1:68279265-68279284 None:intergenic 20.0%
!! AATGCAATGTTAATAAAAAC+TGG + chr8_1:68280079-68280098 Msa1209670:intron 20.0%
!!! TATTGGTAATAAATAGGAAA+GGG - chr8_1:68280447-68280466 None:intergenic 20.0%
!!! AGAAATTGAAATTTGTTATC+TGG + chr8_1:68280714-68280733 Msa1209670:intron 20.0%
!!! CTCTTTTTCAGTATTTATTT+CGG + chr8_1:68280810-68280829 Msa1209670:intron 20.0%
!! AGATAATTAATTCCAATAAG+AGG - chr8_1:68281032-68281051 None:intergenic 20.0%
!! GTTAATTAGTTATGAATCAA+TGG - chr8_1:68281166-68281185 None:intergenic 20.0%
!!! TTTTTTTAATTGGAGTTTTG+GGG - chr8_1:68281195-68281214 None:intergenic 20.0%
!!! GTTTTTTTAATTGGAGTTTT+GGG - chr8_1:68281196-68281215 None:intergenic 20.0%
!!! TGTTTTTTTAATTGGAGTTT+TGG - chr8_1:68281197-68281216 None:intergenic 20.0%
!!! ATGTTAATTAATTTTCATGC+GGG - chr8_1:68281300-68281319 None:intergenic 20.0%
!! TGCATGAAAATATGAAAATA+AGG + chr8_1:68281333-68281352 Msa1209670:intron 20.0%
!! TGAAAATATGAAAATAAGGT+TGG + chr8_1:68281337-68281356 Msa1209670:intron 20.0%
!! GAAAATATGAAAATAAGGTT+GGG + chr8_1:68281338-68281357 Msa1209670:intron 20.0%
!!! AATTTCACAACGAAATTTTA+CGG - chr8_1:68281556-68281575 None:intergenic 20.0%
!! CAAAACAGAAATAATTAAAG+AGG - chr8_1:68281598-68281617 None:intergenic 20.0%
!!! CTCTTTAATTATTTCTGTTT+TGG + chr8_1:68281596-68281615 Msa1209670:intron 20.0%
!! TTTATATTCAATACCATAGT+TGG + chr8_1:68281693-68281712 Msa1209670:intron 20.0%
!! CAATACAAATTAACTTAGAA+TGG - chr8_1:68282147-68282166 None:intergenic 20.0%
!!! CATTCTAAGTTAATTTGTAT+TGG + chr8_1:68282145-68282164 Msa1209670:three_prime_UTR 20.0%
!! TATAATTATATGAGCTTACT+TGG + chr8_1:68282204-68282223 Msa1209670:three_prime_UTR 20.0%
!!! ATTGAGAGTTTTATATGATG+CGG - chr8_1:68275992-68276011 None:intergenic 25.0%
! GAAGAAAAAAATGAAGATCA+CGG + chr8_1:68276128-68276147 Msa1209670:exon 25.0%
! TGGAAATTGAAGGAATAATA+TGG - chr8_1:68276346-68276365 None:intergenic 25.0%
!! TTGAATGTAATTACCTGTTT+TGG + chr8_1:68276616-68276635 Msa1209670:intron 25.0%
! CTCTACAAATAAAAAATGCA+AGG - chr8_1:68276720-68276739 None:intergenic 25.0%
! ACAAATCCATTCAAAATTGT+AGG - chr8_1:68277143-68277162 None:intergenic 25.0%
!! TTTTATACAATTTATGTCCC+TGG + chr8_1:68277310-68277329 Msa1209670:intron 25.0%
!!! ATTTTAGGATCTCAAATCTT+CGG - chr8_1:68277433-68277452 None:intergenic 25.0%
! TAGTACCAATATGAATATGT+TGG + chr8_1:68277671-68277690 Msa1209670:intron 25.0%
!! ATTGAAACAATTGGTTAGTT+TGG + chr8_1:68277718-68277737 Msa1209670:intron 25.0%
! GTATGTAATATATCATTGGT+TGG + chr8_1:68277814-68277833 Msa1209670:intron 25.0%
! GATCATGTTATCAAAATTGA+AGG - chr8_1:68277862-68277881 None:intergenic 25.0%
! TATTTGTCTTTATATGTCGA+AGG + chr8_1:68277907-68277926 Msa1209670:intron 25.0%
!!! TTAAAAGTTTTGGTGAATCA+TGG + chr8_1:68278091-68278110 Msa1209670:CDS 25.0%
!! TTTAGTAATTTTATGGTGCT+TGG + chr8_1:68278849-68278868 Msa1209670:intron 25.0%
!! TTAGTAATTTTATGGTGCTT+GGG + chr8_1:68278850-68278869 Msa1209670:intron 25.0%
! TAATCAAGTAAAAATGGGTA+CGG - chr8_1:68278914-68278933 None:intergenic 25.0%
! CTGGATTAATCAAGTAAAAA+TGG - chr8_1:68278920-68278939 None:intergenic 25.0%
!! CATTTTTACTTGATTAATCC+AGG + chr8_1:68278918-68278937 Msa1209670:intron 25.0%
!! ATTTAGAAAAATGAAGGTAC+GGG - chr8_1:68279259-68279278 None:intergenic 25.0%
! GTAATAATATATCACCTCTA+AGG + chr8_1:68279937-68279956 Msa1209670:intron 25.0%
!! CTATTGGTAATAAATAGGAA+AGG - chr8_1:68280448-68280467 None:intergenic 25.0%
! AAGAATTAAGATACACTGAA+GGG - chr8_1:68280608-68280627 None:intergenic 25.0%
!! ATTTTCACAACGAAATTTCA+CGG + chr8_1:68280867-68280886 Msa1209670:intron 25.0%
! TTTGTATCAAAACAATTGAG+CGG - chr8_1:68281009-68281028 None:intergenic 25.0%
!! TTTTGATACAAACCTCTTAT+TGG + chr8_1:68281017-68281036 Msa1209670:intron 25.0%
!! ACTTTGTTTCTTCTAACTAT+CGG + chr8_1:68281135-68281154 Msa1209670:intron 25.0%
!! TTCTTTTTCCTGTTAAATTG+TGG - chr8_1:68281277-68281296 None:intergenic 25.0%
!!! AGGTTTGTTTTGTTTTGTTT+GGG + chr8_1:68281447-68281466 Msa1209670:intron 25.0%
!! AGCTGACAATAATATGATTT+TGG + chr8_1:68281783-68281802 Msa1209670:intron 25.0%
! TAAGCTCATATAATTATAGC+AGG - chr8_1:68282202-68282221 None:intergenic 25.0%
!! TTCTGGAAAGTATTATTTCG+CGG - chr8_1:68276091-68276110 None:intergenic 30.0%
! AAAGAGTTCATTGTTTTCGT+AGG + chr8_1:68276252-68276271 Msa1209670:CDS 30.0%
TCCTTCAATTTCCATATCTT+AGG + chr8_1:68276352-68276371 Msa1209670:intron 30.0%
CCTTCAATTTCCATATCTTA+GGG + chr8_1:68276353-68276372 Msa1209670:intron 30.0%
TAATTCGAAACCCTAAGATA+TGG - chr8_1:68276366-68276385 None:intergenic 30.0%
ATCTTAGGGTTTCGAATTAT+TGG + chr8_1:68276367-68276386 Msa1209670:intron 30.0%
! ATTATGTTTCGAAGCTTGTT+AGG + chr8_1:68276891-68276910 Msa1209670:intron 30.0%
!!! ACAAATGTCCTTTTTTCAAG+TGG - chr8_1:68277018-68277037 None:intergenic 30.0%
! CTTTGTCCTACAATTTTGAA+TGG + chr8_1:68277134-68277153 Msa1209670:intron 30.0%
TTAATGATGTGGTACAACAA+AGG - chr8_1:68277239-68277258 None:intergenic 30.0%
!!! CTTTGTTTTCCATTTAGTCA+TGG + chr8_1:68277500-68277519 Msa1209670:intron 30.0%
GACAATAATCCATGACTAAA+TGG - chr8_1:68277512-68277531 None:intergenic 30.0%
! TTAGTTTGGTAAGAATGACA+TGG + chr8_1:68277732-68277751 Msa1209670:intron 30.0%
TGATATATTACATACGGACA+TGG - chr8_1:68277809-68277828 None:intergenic 30.0%
GTCCGTATGTAATATATCAT+TGG + chr8_1:68277810-68277829 Msa1209670:intron 30.0%
! AATATATCATTGGTTGGAGT+TGG + chr8_1:68277820-68277839 Msa1209670:intron 30.0%
CGACATATAAAGACAAATAG+AGG - chr8_1:68277906-68277925 None:intergenic 30.0%
CTTTAAATTCCCGTATGTTT+GGG + chr8_1:68277952-68277971 Msa1209670:intron 30.0%
! TCTGATGCATGCTATTTAAT+TGG + chr8_1:68278017-68278036 Msa1209670:intron 30.0%
AATAAAATATGATGTCCTGC+AGG + chr8_1:68278053-68278072 Msa1209670:intron 30.0%
TAAATGCCTCTGCATTATAT+TGG + chr8_1:68278185-68278204 Msa1209670:CDS 30.0%
GATTTGACAGGAACATAAAA+TGG - chr8_1:68278329-68278348 None:intergenic 30.0%
TTTAGAAGACAAAAGATGCA+GGG - chr8_1:68278472-68278491 None:intergenic 30.0%
ATTTAGAAGACAAAAGATGC+AGG - chr8_1:68278473-68278492 None:intergenic 30.0%
ATGTACTGTGTACATATACT+TGG + chr8_1:68278797-68278816 Msa1209670:intron 30.0%
TAGTGTTTGTCAACATATGA+TGG + chr8_1:68279422-68279441 Msa1209670:intron 30.0%
! ATGTTTTATAACTTCGCCTA+TGG + chr8_1:68279565-68279584 Msa1209670:intron 30.0%
AATGTACACATATGCATTCA+CGG - chr8_1:68279604-68279623 None:intergenic 30.0%
! GTTTTCTGTTACTAAAGCTT+TGG + chr8_1:68279654-68279673 Msa1209670:intron 30.0%
GTTATGGTATTCATTAAGCA+TGG + chr8_1:68279689-68279708 Msa1209670:intron 30.0%
!! GCTTTTATTTAAGTGATCAC+AGG + chr8_1:68279782-68279801 Msa1209670:intron 30.0%
CGTATGATGAATATACTGAT+AGG + chr8_1:68280031-68280050 Msa1209670:intron 30.0%
!!! TCATTTTTTGGCTTGTAACT+TGG - chr8_1:68280164-68280183 None:intergenic 30.0%
!!! ATGGTGTTCTTCTCATTTTT+TGG - chr8_1:68280176-68280195 None:intergenic 30.0%
AAAAGATAGATCCAAGTTAC+AGG + chr8_1:68280273-68280292 Msa1209670:intron 30.0%
ATGATAATTCCACTCCTAAA+AGG + chr8_1:68280379-68280398 Msa1209670:intron 30.0%
! GGAGTCTATTGGTAATAAAT+AGG - chr8_1:68280453-68280472 None:intergenic 30.0%
! TGCATTTCAAGATACTTTTC+AGG - chr8_1:68280498-68280517 None:intergenic 30.0%
AGAATTAAGATACACTGAAG+GGG - chr8_1:68280607-68280626 None:intergenic 30.0%
GAAGAATTAAGATACACTGA+AGG - chr8_1:68280609-68280628 None:intergenic 30.0%
!!! ATTGCCTTTTTGGTTATACA+AGG + chr8_1:68280748-68280767 Msa1209670:intron 30.0%
ACAACCTTGTATAACCAAAA+AGG - chr8_1:68280755-68280774 None:intergenic 30.0%
! ATGAAAAATGCTATTTGGGA+CGG + chr8_1:68280842-68280861 Msa1209670:intron 30.0%
ATTCGATACATGATTCACAA+AGG - chr8_1:68281102-68281121 None:intergenic 30.0%
AGAAGAAACAAAGTTATGTG+AGG - chr8_1:68281129-68281148 None:intergenic 30.0%
!!! CACAGCTCTGTTTTTTTAAT+TGG - chr8_1:68281205-68281224 None:intergenic 30.0%
! TTTTTCCTGTTAAATTGTGG+AGG - chr8_1:68281274-68281293 None:intergenic 30.0%
!! GAAATTTGTTACTGTGTTTG+TGG + chr8_1:68281360-68281379 Msa1209670:CDS 30.0%
TACACAAATCTGTTAAAGGA+AGG + chr8_1:68281398-68281417 Msa1209670:CDS 30.0%
! TCTGTTAAAGGAAGGAATTT+TGG + chr8_1:68281406-68281425 Msa1209670:CDS 30.0%
! CTGTTAAAGGAAGGAATTTT+GGG + chr8_1:68281407-68281426 Msa1209670:CDS 30.0%
!!! CAGGTTTGTTTTGTTTTGTT+TGG + chr8_1:68281446-68281465 Msa1209670:intron 30.0%
AATTAAAGAGGACTGCTATT+TGG - chr8_1:68281586-68281605 None:intergenic 30.0%
TCTTGAAATACAACCAACTA+TGG - chr8_1:68281709-68281728 None:intergenic 30.0%
CTTACAATATTGTACAACAC+TGG - chr8_1:68281849-68281868 None:intergenic 30.0%
!! AGAATGTTAATTTGCCAACA+TGG - chr8_1:68282053-68282072 None:intergenic 30.0%
ATATTTCAAAAGTTGACACG+AGG - chr8_1:68282251-68282270 None:intergenic 30.0%
! GGTAGTATTTTACTTGCATC+TGG - chr8_1:68275900-68275919 None:intergenic 35.0%
! TTCTTTCGGTTTTCTCTTTC+TGG - chr8_1:68276108-68276127 None:intergenic 35.0%
AACAATGAACTCTTTAACGC+TGG - chr8_1:68276247-68276266 None:intergenic 35.0%
CCCTAAGATATGGAAATTGA+AGG - chr8_1:68276356-68276375 None:intergenic 35.0%
!! TTGTTTTGCGTTGATCTATC+TGG + chr8_1:68276429-68276448 Msa1209670:intron 35.0%
!!! GTAATTACCTGTTTTGGTGT+CGG + chr8_1:68276622-68276641 Msa1209670:intron 35.0%
!!! TGCTGTTTCCTTTTACCTTT+AGG + chr8_1:68276919-68276938 Msa1209670:intron 35.0%
AACTGCAACCTAAAGGTAAA+AGG - chr8_1:68276930-68276949 None:intergenic 35.0%
GTCTTATAACTGCAACCTAA+AGG - chr8_1:68276937-68276956 None:intergenic 35.0%
! TTAGGTTGCAGTTATAAGAC+TGG + chr8_1:68276937-68276956 Msa1209670:intron 35.0%
!!! CCTTTTTTCAAGTGGAACAT+GGG - chr8_1:68277010-68277029 None:intergenic 35.0%
!!! TCCTTTTTTCAAGTGGAACA+TGG - chr8_1:68277011-68277030 None:intergenic 35.0%
AAACATGAAATGCCTCTAAC+TGG - chr8_1:68277166-68277185 None:intergenic 35.0%
!! GTTAGAGGCATTTCATGTTT+AGG + chr8_1:68277166-68277185 Msa1209670:intron 35.0%
AAATACTCCGTAGTGAGATA+TGG + chr8_1:68277269-68277288 Msa1209670:intron 35.0%
! TCCAAGTCCAACATGATTTT+TGG + chr8_1:68277404-68277423 Msa1209670:intron 35.0%
TCCAAAAATCATGTTGGACT+TGG - chr8_1:68277408-68277427 None:intergenic 35.0%
TCGGTATCCAAAAATCATGT+TGG - chr8_1:68277414-68277433 None:intergenic 35.0%
CGTCAATAACACTGCTAATT+GGG - chr8_1:68277763-68277782 None:intergenic 35.0%
ACGTCAATAACACTGCTAAT+TGG - chr8_1:68277764-68277783 None:intergenic 35.0%
TATATTACATACGGACATGG+TGG - chr8_1:68277806-68277825 None:intergenic 35.0%
AATAGAGGAAAGCAGATGTT+CGG - chr8_1:68277891-68277910 None:intergenic 35.0%
! GCTTTAAATTCCCGTATGTT+TGG + chr8_1:68277951-68277970 Msa1209670:intron 35.0%
TAGATGCCAGTTATATCAGA+TGG + chr8_1:68277988-68278007 Msa1209670:intron 35.0%
TGCATTCCATCTGATATAAC+TGG - chr8_1:68277997-68278016 None:intergenic 35.0%
GTGAGAGCTTCATTCAAATA+GGG - chr8_1:68278150-68278169 None:intergenic 35.0%
CTAAAGCCAATATAATGCAG+AGG - chr8_1:68278194-68278213 None:intergenic 35.0%
GTGAAAAGTCATCATGTGAA+AGG - chr8_1:68278297-68278316 None:intergenic 35.0%
TGACAGGAACATAAAATGGA+GGG - chr8_1:68278325-68278344 None:intergenic 35.0%
TTGACAGGAACATAAAATGG+AGG - chr8_1:68278326-68278345 None:intergenic 35.0%
ATAAGTTGCTGAAAATCCAG+AGG + chr8_1:68278370-68278389 Msa1209670:CDS 35.0%
TAAGTTGCTGAAAATCCAGA+GGG + chr8_1:68278371-68278390 Msa1209670:CDS 35.0%
ATGCATGCTAAACACTTACA+AGG - chr8_1:68278419-68278438 None:intergenic 35.0%
TTGTAAGTGTTTAGCATGCA+TGG + chr8_1:68278418-68278437 Msa1209670:intron 35.0%
CAACTGAATGATTGCTAATC+AGG - chr8_1:68278712-68278731 None:intergenic 35.0%
! AAGCATGGGTACTTCTAAAA+TGG + chr8_1:68278884-68278903 Msa1209670:intron 35.0%
TTTACTTGATTAATCCAGGG+TGG + chr8_1:68278922-68278941 Msa1209670:intron 35.0%
ATTCTCTCTCTTGCTTATGA+TGG + chr8_1:68279017-68279036 Msa1209670:intron 35.0%
! CTTGCTTATGATGGAAATAG+TGG + chr8_1:68279026-68279045 Msa1209670:intron 35.0%
! TATGATGGAAATAGTGGAAG+CGG + chr8_1:68279032-68279051 Msa1209670:intron 35.0%
! CCATTGTTGTTGTGAAAACA+TGG - chr8_1:68279188-68279207 None:intergenic 35.0%
! CCATGTTTTCACAACAACAA+TGG + chr8_1:68279185-68279204 Msa1209670:intron 35.0%
! AGAAAAGCCTTATGAAGCAT+AGG - chr8_1:68279314-68279333 None:intergenic 35.0%
GAATGCATATGTGTACATTC+AGG + chr8_1:68279605-68279624 Msa1209670:intron 35.0%
! TACTAAAGCTTTGGTGTATG+TGG + chr8_1:68279663-68279682 Msa1209670:intron 35.0%
! ACTAAAGCTTTGGTGTATGT+GGG + chr8_1:68279664-68279683 Msa1209670:intron 35.0%
! TATATCACCTCTAAGGATAC+AGG + chr8_1:68279944-68279963 Msa1209670:intron 35.0%
! ATATCACCTCTAAGGATACA+GGG + chr8_1:68279945-68279964 Msa1209670:intron 35.0%
TTATAACCCTGTATCCTTAG+AGG - chr8_1:68279954-68279973 None:intergenic 35.0%
CAAATTGGAGGGATAGTTAA+GGG - chr8_1:68280228-68280247 None:intergenic 35.0%
TTACCATGTGCATAGCAAAT+TGG - chr8_1:68280243-68280262 None:intergenic 35.0%
AAGATTGGAGGGATAGTTAA+GGG - chr8_1:68280351-68280370 None:intergenic 35.0%
TTATCATGTACACGGAAGAT+TGG - chr8_1:68280366-68280385 None:intergenic 35.0%
GAGTGGAATTATCATGTACA+CGG - chr8_1:68280374-68280393 None:intergenic 35.0%
!! TTTCAAGATACTTTTCAGGC+AGG - chr8_1:68280494-68280513 None:intergenic 35.0%
! TGTCACCAACATTGATTATC+AGG + chr8_1:68280539-68280558 Msa1209670:CDS 35.0%
AGCTACCTGATAATCAATGT+TGG - chr8_1:68280547-68280566 None:intergenic 35.0%
CCAAAAAGGCAATAAAAGCA+AGG - chr8_1:68280741-68280760 None:intergenic 35.0%
!! CCTTGCTTTTATTGCCTTTT+TGG + chr8_1:68280738-68280757 Msa1209670:intron 35.0%
GAAACAAAGTTATGTGAGGA+TGG - chr8_1:68281125-68281144 None:intergenic 35.0%
! AGTTTGCTTGTTGCTTATTG+TGG - chr8_1:68281250-68281269 None:intergenic 35.0%
CCTTTAACAGATTTGTGTAG+AGG - chr8_1:68281397-68281416 None:intergenic 35.0%
CCTCTACACAAATCTGTTAA+AGG + chr8_1:68281394-68281413 Msa1209670:CDS 35.0%
!!! AATTTTGGGTTTCTGAGAGA+AGG + chr8_1:68281421-68281440 Msa1209670:CDS 35.0%
! GAAATTTTACGGACGTGAAT+AGG - chr8_1:68281545-68281564 None:intergenic 35.0%
GTTGGTTGTATTTCAAGAAG+AGG + chr8_1:68281711-68281730 Msa1209670:intron 35.0%
TGAACAGATGTTCTACAAAC+AGG + chr8_1:68281810-68281829 Msa1209670:intron 35.0%
CAATATTGTACAACACTGGT+TGG - chr8_1:68281845-68281864 None:intergenic 35.0%
AGCATCTCAAACAAGGTTAA+AGG - chr8_1:68282076-68282095 None:intergenic 35.0%
CATAGTAAGCATCTCAAACA+AGG - chr8_1:68282083-68282102 None:intergenic 35.0%
TATATGAGCTTACTTGGAAG+TGG + chr8_1:68282210-68282229 Msa1209670:three_prime_UTR 35.0%
! TTTTGTCAATGTGGGGGAAA+AGG - chr8_1:68275877-68275896 None:intergenic 40.0%
!!! ATCTGGTTTTGTCAATGTGG+GGG - chr8_1:68275883-68275902 None:intergenic 40.0%
!!! CATCTGGTTTTGTCAATGTG+GGG - chr8_1:68275884-68275903 None:intergenic 40.0%
!!! GCATCTGGTTTTGTCAATGT+GGG - chr8_1:68275885-68275904 None:intergenic 40.0%
!!! TGCATCTGGTTTTGTCAATG+TGG - chr8_1:68275886-68275905 None:intergenic 40.0%
GTGTTAAGGAAAGGACTGAA+TGG - chr8_1:68276023-68276042 None:intergenic 40.0%
! TTGCGTTGATCTATCTGGAT+CGG + chr8_1:68276434-68276453 Msa1209670:intron 40.0%
ACATCAACACTTCTGATCGA+AGG - chr8_1:68276661-68276680 None:intergenic 40.0%
!! TTCGATCAGAAGTGTTGATG+TGG + chr8_1:68276660-68276679 Msa1209670:intron 40.0%
GTGCATGCTTACAACAGAAA+TGG + chr8_1:68276746-68276765 Msa1209670:CDS 40.0%
! AGAAATGGACTTTGTGCAGT+GGG + chr8_1:68276761-68276780 Msa1209670:CDS 40.0%
ACTTTGTGCAGTGGGATTTA+TGG + chr8_1:68276769-68276788 Msa1209670:CDS 40.0%
! TGCGTTTTCTCTTCTCAATC+AGG + chr8_1:68276814-68276833 Msa1209670:CDS 40.0%
AGAGTGAGAGCAATGTGTAT+TGG + chr8_1:68276839-68276858 Msa1209670:intron 40.0%
CCCATGTTCCACTTGAAAAA+AGG + chr8_1:68277007-68277026 Msa1209670:intron 40.0%
TTGTAGGACAAAGCAAGCAA+CGG - chr8_1:68277127-68277146 None:intergenic 40.0%
! GAATGGATTTGTCCAGTTAG+AGG + chr8_1:68277151-68277170 Msa1209670:intron 40.0%
! TAACTGTGCATTGACGCTTT+AGG + chr8_1:68277350-68277369 Msa1209670:intron 40.0%
CGAGGAAGTTAGACAAGATT+GGG - chr8_1:68277550-68277569 None:intergenic 40.0%
ACGAGGAAGTTAGACAAGAT+TGG - chr8_1:68277551-68277570 None:intergenic 40.0%
!! ATTGGTCATCGTTGATTCGA+CGG - chr8_1:68277594-68277613 None:intergenic 40.0%
!!! GATTTTAACTGTTGGGGTCA+AGG + chr8_1:68277619-68277638 Msa1209670:intron 40.0%
TAAATTCCCGTATGTTTGGG+TGG + chr8_1:68277955-68277974 Msa1209670:intron 40.0%
!! TGAATCATGGAGAAGCATTC+AGG + chr8_1:68278104-68278123 Msa1209670:CDS 40.0%
CGTGAGAGCTTCATTCAAAT+AGG - chr8_1:68278151-68278170 None:intergenic 40.0%
TATGTTCCTGTCAAATCTCC+AGG + chr8_1:68278332-68278351 Msa1209670:intron 40.0%
TTGTATTGCAACGCAGCATA+TGG + chr8_1:68278443-68278462 Msa1209670:intron 40.0%
TGTATTGCAACGCAGCATAT+GGG + chr8_1:68278444-68278463 Msa1209670:intron 40.0%
! GTTTGTTTGAGATTCGGCAT+TGG + chr8_1:68278543-68278562 Msa1209670:intron 40.0%
CACATCACGATGCTATGAAA+TGG - chr8_1:68278661-68278680 None:intergenic 40.0%
!! TTAGAAGTACCCATGCTTCA+GGG - chr8_1:68278882-68278901 None:intergenic 40.0%
!! TTTAGAAGTACCCATGCTTC+AGG - chr8_1:68278883-68278902 None:intergenic 40.0%
CAACAAAAACGTACAAGCGA+TGG + chr8_1:68278954-68278973 Msa1209670:intron 40.0%
! GCATGATGATGATAGAAGTG+TGG + chr8_1:68279080-68279099 Msa1209670:intron 40.0%
ACCTGTACCTATGCTTCATA+AGG + chr8_1:68279304-68279323 Msa1209670:intron 40.0%
CAAAACAAGCCAATAGAGTG+AGG - chr8_1:68279345-68279364 None:intergenic 40.0%
!!! CTCACTCTATTGGCTTGTTT+TGG + chr8_1:68279343-68279362 Msa1209670:intron 40.0%
CACTACATTTGTGTGTGATG+TGG - chr8_1:68279407-68279426 None:intergenic 40.0%
ATATGCATTCACGGAATCAC+GGG - chr8_1:68279595-68279614 None:intergenic 40.0%
CATATGCATTCACGGAATCA+CGG - chr8_1:68279596-68279615 None:intergenic 40.0%
!! AAGCATGGCTTTAGTGTATG+TGG + chr8_1:68279704-68279723 Msa1209670:intron 40.0%
! GGCTTTAGTGTATGTGGTTA+TGG + chr8_1:68279710-68279729 Msa1209670:intron 40.0%
AGAACATGCAGCATGCAAAT+AGG + chr8_1:68279820-68279839 Msa1209670:intron 40.0%
GAATGTGCTCTCATATAAGC+TGG + chr8_1:68279915-68279934 Msa1209670:intron 40.0%
CAGGGTTATAAATGTTGCCT+AGG + chr8_1:68279963-68279982 Msa1209670:intron 40.0%
TCTTAAGTCTCTTGACTCCT+AGG - chr8_1:68279983-68280002 None:intergenic 40.0%
GGCTTGTAACTTGGATCTAT+AGG - chr8_1:68280155-68280174 None:intergenic 40.0%
GCAAATTGGAGGGATAGTTA+AGG - chr8_1:68280229-68280248 None:intergenic 40.0%
CATGTGCATAGCAAATTGGA+GGG - chr8_1:68280239-68280258 None:intergenic 40.0%
TCATTATTGGGCCTGTAACT+TGG - chr8_1:68280287-68280306 None:intergenic 40.0%
GTGGCGTTCTTCTCATTATT+GGG - chr8_1:68280299-68280318 None:intergenic 40.0%
GAAGATTGGAGGGATAGTTA+AGG - chr8_1:68280352-68280371 None:intergenic 40.0%
!! TCAATGCTACCTTTTAGGAG+TGG - chr8_1:68280391-68280410 None:intergenic 40.0%
! GTGGATCAATGCTACCTTTT+AGG - chr8_1:68280396-68280415 None:intergenic 40.0%
!! GATAGGTTTCTGGAGTCTAT+TGG - chr8_1:68280464-68280483 None:intergenic 40.0%
!! AGGTGGTATTGATAGGTTTC+TGG - chr8_1:68280474-68280493 None:intergenic 40.0%
TCTTGAAATGCAGTGCTTCA+AGG + chr8_1:68280506-68280525 Msa1209670:CDS 40.0%
CTTGAAATGCAGTGCTTCAA+GGG + chr8_1:68280507-68280526 Msa1209670:CDS 40.0%
TGAATACATCTGTTTCCACG+CGG + chr8_1:68280895-68280914 Msa1209670:intron 40.0%
ATATCAAAAAGTTCACCGCG+TGG - chr8_1:68280913-68280932 None:intergenic 40.0%
GTATCAAAACAATTGAGCGG+TGG - chr8_1:68281006-68281025 None:intergenic 40.0%
AACTGCCTCCACAATTTAAC+AGG + chr8_1:68281266-68281285 Msa1209670:intron 40.0%
! AAGAGGACTGCTATTTGGTA+CGG - chr8_1:68281581-68281600 None:intergenic 40.0%
CCGTCTGCAATACATATATC+GGG - chr8_1:68282004-68282023 None:intergenic 40.0%
CCCGATATATGTATTGCAGA+CGG + chr8_1:68282001-68282020 Msa1209670:three_prime_UTR 40.0%
CCCGTCTGCAATACATATAT+CGG - chr8_1:68282005-68282024 None:intergenic 40.0%
CCGATATATGTATTGCAGAC+GGG + chr8_1:68282002-68282021 Msa1209670:three_prime_UTR 40.0%
GGGAACGAAATATTAGCCAA+AGG + chr8_1:68282022-68282041 Msa1209670:three_prime_UTR 40.0%
GTGCTGGAAAGATGAAACTG+CGG - chr8_1:68275961-68275980 None:intergenic 45.0%
AATGAAGATCACGGCTCTGT+TGG + chr8_1:68276137-68276156 Msa1209670:exon 45.0%
!! CTGTTGGTGCTAAAATCCAC+CGG + chr8_1:68276153-68276172 Msa1209670:CDS 45.0%
GCTTCAGATGTGAGTCACTT+CGG + chr8_1:68276207-68276226 Msa1209670:CDS 45.0%
! CTGAGGAGTACGATTAGCTA+CGG - chr8_1:68276283-68276302 None:intergenic 45.0%
GTAGCTAATCGTACTCCTCA+GGG + chr8_1:68276282-68276301 Msa1209670:CDS 45.0%
! TGCGTTGATCTATCTGGATC+GGG + chr8_1:68276435-68276454 Msa1209670:intron 45.0%
! CAGAAATGGACTTTGTGCAG+TGG + chr8_1:68276760-68276779 Msa1209670:CDS 45.0%
AGAGAAAACGCACTACGAAC+TGG - chr8_1:68276806-68276825 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_1:68277085-68277104 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_1:68277086-68277105 None:intergenic 45.0%
AGTTACCTTGCCAATCACCA+TGG + chr8_1:68277210-68277229 Msa1209670:intron 45.0%
ACAAAGGACACCATGGTGAT+TGG - chr8_1:68277223-68277242 None:intergenic 45.0%
TGGTACAACAAAGGACACCA+TGG - chr8_1:68277230-68277249 None:intergenic 45.0%
CGTCTGACCATATCTCACTA+CGG - chr8_1:68277279-68277298 None:intergenic 45.0%
TTATGTCCCTGGTATTGCTG+AGG + chr8_1:68277321-68277340 Msa1209670:intron 45.0%
AAGTGTCCTCAGCAATACCA+GGG - chr8_1:68277330-68277349 None:intergenic 45.0%
! AAAGTGTCCTCAGCAATACC+AGG - chr8_1:68277331-68277350 None:intergenic 45.0%
! TGTGCATTGACGCTTTAGGT+TGG + chr8_1:68277354-68277373 Msa1209670:intron 45.0%
ACTTATTCAAGCCGAGCAGA+GGG - chr8_1:68277381-68277400 None:intergenic 45.0%
AACTTATTCAAGCCGAGCAG+AGG - chr8_1:68277382-68277401 None:intergenic 45.0%
! TCTGCTCGGCTTGAATAAGT+TGG + chr8_1:68277381-68277400 Msa1209670:intron 45.0%
! ATACGGGAATTTAAAGCCGC+AGG - chr8_1:68277948-68277967 None:intergenic 45.0%
TTATCCGCCACCCAAACATA+CGG - chr8_1:68277965-68277984 None:intergenic 45.0%
TATATTCATCCAGCACCTGC+AGG - chr8_1:68278071-68278090 None:intergenic 45.0%
GCTTCATTCAAATAGGGCCA+TGG - chr8_1:68278144-68278163 None:intergenic 45.0%
TGAAGCTCTCACGAAATTCC+AGG + chr8_1:68278158-68278177 Msa1209670:CDS 45.0%
! ATGCTTGGGTTGCATGATAC+TGG - chr8_1:68278599-68278618 None:intergenic 45.0%
!! TAGAAGTACCCATGCTTCAG+GGG - chr8_1:68278881-68278900 None:intergenic 45.0%
TGTTGTACTATCAACCACCC+TGG - chr8_1:68278939-68278958 None:intergenic 45.0%
GCCTTATGAAGCATAGGTAC+AGG - chr8_1:68279308-68279327 None:intergenic 45.0%
TCATTCCCTCCTCACTCTAT+TGG + chr8_1:68279333-68279352 Msa1209670:intron 45.0%
ACAAGCCAATAGAGTGAGGA+GGG - chr8_1:68279341-68279360 None:intergenic 45.0%
AACAAGCCAATAGAGTGAGG+AGG - chr8_1:68279342-68279361 None:intergenic 45.0%
TCGTGCAAGCACACTATCAA+TGG - chr8_1:68279472-68279491 None:intergenic 45.0%
!! ATTGATAGTGTGCTTGCACG+AGG + chr8_1:68279471-68279490 Msa1209670:CDS 45.0%
! AAAGCTTTGGTGTATGTGGG+TGG + chr8_1:68279667-68279686 Msa1209670:intron 45.0%
TTGGTGTATGTGGGTGGTTA+TGG + chr8_1:68279673-68279692 Msa1209670:intron 45.0%
GGATCTATAGGTGTTCACCT+TGG - chr8_1:68280143-68280162 None:intergenic 45.0%
! CAGATCTGAAGTCAGAGAGA+TGG - chr8_1:68280195-68280214 None:intergenic 45.0%
CCATGTGCATAGCAAATTGG+AGG - chr8_1:68280240-68280259 None:intergenic 45.0%
!! CCTCCAATTTGCTATGCACA+TGG + chr8_1:68280237-68280256 Msa1209670:intron 45.0%
GGTGGCGTTCTTCTCATTAT+TGG - chr8_1:68280300-68280319 None:intergenic 45.0%
! CAACAGATCTGAAGTCAGAG+AGG - chr8_1:68280198-68280217 None:intergenic 45.0%
CATGTACACGGAAGATTGGA+GGG - chr8_1:68280362-68280381 None:intergenic 45.0%
TCATGTACACGGAAGATTGG+AGG - chr8_1:68280363-68280382 None:intergenic 45.0%
ACTCTAATGCTCGGGTTATG+TGG - chr8_1:68280415-68280434 None:intergenic 45.0%
CCAACAAGACTCTAATGCTC+GGG - chr8_1:68280423-68280442 None:intergenic 45.0%
CCCAACAAGACTCTAATGCT+CGG - chr8_1:68280424-68280443 None:intergenic 45.0%
!! CCGAGCATTAGAGTCTTGTT+GGG + chr8_1:68280421-68280440 Msa1209670:intron 45.0%
!! TTCAGGCAGGTGGTATTGAT+AGG - chr8_1:68280481-68280500 None:intergenic 45.0%
!! CAAGATACTTTTCAGGCAGG+TGG - chr8_1:68280491-68280510 None:intergenic 45.0%
AGATACACTGAAGGGGCAAT+TGG - chr8_1:68280600-68280619 None:intergenic 45.0%
AGACTAGACGCTTCTGTGTT+TGG - chr8_1:68280676-68280695 None:intergenic 45.0%
!! GGTGGTAGTGGTGAACTTAA+GGG - chr8_1:68280988-68281007 None:intergenic 45.0%
AAACAATTGAGCGGTGGTAG+TGG - chr8_1:68281000-68281019 None:intergenic 45.0%
GTCAGCTCAGCAAAGTAAGT+GGG - chr8_1:68281770-68281789 None:intergenic 45.0%
TGTCAGCTCAGCAAAGTAAG+TGG - chr8_1:68281771-68281790 None:intergenic 45.0%
AACAGCATCAATGTCGGAAC+AGG - chr8_1:68281910-68281929 None:intergenic 45.0%
TGTTCCGACATTGATGCTGT+TGG + chr8_1:68281909-68281928 Msa1209670:CDS 45.0%
CCATCCAACAGCATCAATGT+CGG - chr8_1:68281916-68281935 None:intergenic 45.0%
CGACATTGATGCTGTTGGAT+GGG + chr8_1:68281914-68281933 Msa1209670:CDS 45.0%
GACATTGATGCTGTTGGATG+GGG + chr8_1:68281915-68281934 Msa1209670:CDS 45.0%
AGCCAAAGGTCTTACCATGT+TGG + chr8_1:68282036-68282055 Msa1209670:three_prime_UTR 45.0%
TGCCAACATGGTAAGACCTT+TGG - chr8_1:68282041-68282060 None:intergenic 45.0%
!! TTATTTATTTATATTCAAAA+TGG + chr8_1:68275807-68275826 Msa1209670:five_prime_UTR 5.0%
!! TATTTATTTATATTCAAAAT+GGG + chr8_1:68275808-68275827 Msa1209670:five_prime_UTR 5.0%
!! ATAAAAACAATAAAAAAAAA+CGG - chr8_1:68276491-68276510 None:intergenic 5.0%
AATGTGGGGGAAAAGGTGAC+GGG - chr8_1:68275870-68275889 None:intergenic 50.0%
CAATGTGGGGGAAAAGGTGA+CGG - chr8_1:68275871-68275890 None:intergenic 50.0%
ACTACCCTCACCATAAAGCG+AGG + chr8_1:68275914-68275933 Msa1209670:five_prime_UTR 50.0%
TCGGGGTGTGTGTTAAGGAA+AGG - chr8_1:68276032-68276051 None:intergenic 50.0%
TGTTGTGATTCGCACGCAGT+CGG - chr8_1:68276051-68276070 None:intergenic 50.0%
CGTAGCTAATCGTACTCCTC+AGG + chr8_1:68276281-68276300 Msa1209670:CDS 50.0%
CGTCAATCTGTTCAGCACGA+AGG + chr8_1:68276309-68276328 Msa1209670:CDS 50.0%
!! TGATCGAAGGAGTGTCCATG+TGG - chr8_1:68276648-68276667 None:intergenic 50.0%
AAGTGGGGTCGGCTAAGTAA+CGG - chr8_1:68277070-68277089 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_1:68277081-68277100 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_1:68277087-68277106 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_1:68277084-68277103 Msa1209670:intron 50.0%
CTTATTCAAGCCGAGCAGAG+GGG - chr8_1:68277380-68277399 None:intergenic 50.0%
CCTTTGTGAGCATGTTCACG+AGG - chr8_1:68277568-68277587 None:intergenic 50.0%
CCTCGTGAACATGCTCACAA+AGG + chr8_1:68277565-68277584 Msa1209670:intron 50.0%
ATTCCCGTATGTTTGGGTGG+CGG + chr8_1:68277958-68277977 Msa1209670:intron 50.0%
TATCCGCCACCCAAACATAC+GGG - chr8_1:68277964-68277983 None:intergenic 50.0%
ATATGATGTCCTGCAGGTGC+TGG + chr8_1:68278059-68278078 Msa1209670:intron 50.0%
! AGGCAGACAGTACTGAACCA+TGG + chr8_1:68278124-68278143 Msa1209670:CDS 50.0%
!! TGCAGAGGCATTTACATGCC+TGG - chr8_1:68278179-68278198 None:intergenic 50.0%
GCAACTTATCAGCCTCTGCA+GGG - chr8_1:68278359-68278378 None:intergenic 50.0%
AGCAACTTATCAGCCTCTGC+AGG - chr8_1:68278360-68278379 None:intergenic 50.0%
GCTGAAAATCCAGAGGGAGT+TGG + chr8_1:68278377-68278396 Msa1209670:CDS 50.0%
TTGTTTCGTCCAACTCCCTC+TGG - chr8_1:68278389-68278408 None:intergenic 50.0%
TTTGCTCTGCAGCGATGCTT+GGG - chr8_1:68278613-68278632 None:intergenic 50.0%
! TTTTGCTCTGCAGCGATGCT+TGG - chr8_1:68278614-68278633 None:intergenic 50.0%
! GATGGAAATAGTGGAAGCGG+TGG + chr8_1:68279035-68279054 Msa1209670:intron 50.0%
TGATTTGAGTGCAGCATCGC+AGG + chr8_1:68279527-68279546 Msa1209670:CDS 50.0%
AGAGCAAATGCTTCCAGCCA+AGG + chr8_1:68280123-68280142 Msa1209670:intron 50.0%
CTATAGGTGTTCACCTTGGC+TGG - chr8_1:68280139-68280158 None:intergenic 50.0%
GAGGGATAGTTAAGGGACAC+AGG - chr8_1:68280221-68280240 None:intergenic 50.0%
! CAGATCTGAAGTCAGAGAGG+TGG - chr8_1:68280318-68280337 None:intergenic 50.0%
GAGGGATAGTTAAGGGACAC+AGG - chr8_1:68280221-68280240 None:intergenic 50.0%
! CCCGAGCATTAGAGTCTTGT+TGG + chr8_1:68280420-68280439 Msa1209670:intron 50.0%
ATGCAGTGCTTCAAGGGACT+TGG + chr8_1:68280513-68280532 Msa1209670:CDS 50.0%
TAGACGCTTCTGTGTTTGGC+TGG - chr8_1:68280672-68280691 None:intergenic 50.0%
!! CGGTGGTAGTGGTGAACTTA+AGG - chr8_1:68280989-68281008 None:intergenic 50.0%
! GGGTTTCTGAGAGAAGGAAC+AGG + chr8_1:68281427-68281446 Msa1209670:CDS 50.0%
! ACGAGCTCGCATAGTACTGA+CGG - chr8_1:68281881-68281900 None:intergenic 50.0%
CCGACATTGATGCTGTTGGA+TGG + chr8_1:68281913-68281932 Msa1209670:CDS 50.0%
ATGTGGGGGAAAAGGTGACG+GGG - chr8_1:68275869-68275888 None:intergenic 55.0%
GCTGCCTCGCTTTATGGTGA+GGG - chr8_1:68275921-68275940 None:intergenic 55.0%
ATGCTCGCTGCCTCGCTTTA+TGG - chr8_1:68275927-68275946 None:intergenic 55.0%
TAAAGCGAGGCAGCGAGCAT+TGG + chr8_1:68275927-68275946 Msa1209670:five_prime_UTR 55.0%
TTGTGATTCGCACGCAGTCG+GGG - chr8_1:68276049-68276068 None:intergenic 55.0%
GTTGTGATTCGCACGCAGTC+GGG - chr8_1:68276050-68276069 None:intergenic 55.0%
GTGCTAAAATCCACCGGCGA+TGG + chr8_1:68276159-68276178 Msa1209670:CDS 55.0%
CACCGGCGATGGTTCAGAAT+CGG + chr8_1:68276170-68276189 Msa1209670:CDS 55.0%
!! CACCGATTCTGAACCATCGC+CGG - chr8_1:68276175-68276194 None:intergenic 55.0%
ACAGATTGACGCTGACCCTG+AGG - chr8_1:68276300-68276319 None:intergenic 55.0%
CATGTGGCCGACACCAAAAC+AGG - chr8_1:68276632-68276651 None:intergenic 55.0%
!!! CTGTTTTGGTGTCGGCCACA+TGG + chr8_1:68276630-68276649 Msa1209670:intron 55.0%
ACTTAGCCGACCCCACTTAG+TGG + chr8_1:68277072-68277091 Msa1209670:intron 55.0%
CTTAGCCGACCCCACTTAGT+GGG + chr8_1:68277073-68277092 Msa1209670:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_1:68277079-68277098 Msa1209670:intron 55.0%
GGACACCATGGTGATTGGCA+AGG - chr8_1:68277218-68277237 None:intergenic 55.0%
!! TTTAGGTTGGCCCCTCTGCT+CGG + chr8_1:68277367-68277386 Msa1209670:intron 55.0%
ACGGACATGGTGGCAAGACA+CGG - chr8_1:68277796-68277815 None:intergenic 55.0%
! CGGGAATTTAAAGCCGCAGG+CGG - chr8_1:68277945-68277964 None:intergenic 55.0%
CAGGGTCCTGGAGATTTGAC+AGG - chr8_1:68278341-68278360 None:intergenic 55.0%
AAATCTCCAGGACCCTGCAG+AGG + chr8_1:68278344-68278363 Msa1209670:intron 55.0%
! TGGGCTTTTCCCCTGAAGCA+TGG + chr8_1:68278869-68278888 Msa1209670:intron 55.0%
! GGGCTTTTCCCCTGAAGCAT+GGG + chr8_1:68278870-68278889 Msa1209670:intron 55.0%
CGGAATCACGGGCAATCCAT+AGG - chr8_1:68279584-68279603 None:intergenic 55.0%
! AGATCAGAAAGTGCAGCGCG+TGG + chr8_1:68281511-68281530 Msa1209670:intron 55.0%
! TGTGGGGGAAAAGGTGACGG+GGG - chr8_1:68275868-68275887 None:intergenic 60.0%
CGCTGCCTCGCTTTATGGTG+AGG - chr8_1:68275922-68275941 None:intergenic 60.0%
! TGATGCGGAAGCGTGTGTGC+TGG - chr8_1:68275977-68275996 None:intergenic 60.0%
CGCAGTCGGGGTGTGTGTTA+AGG - chr8_1:68276037-68276056 None:intergenic 60.0%
CGATTCTGAACCATCGCCGG+TGG - chr8_1:68276172-68276191 None:intergenic 60.0%
GGACATGGTGGCAAGACACG+GGG - chr8_1:68277794-68277813 None:intergenic 60.0%
CGGACATGGTGGCAAGACAC+GGG - chr8_1:68277795-68277814 None:intergenic 60.0%
TATCAGCCTCTGCAGGGTCC+TGG - chr8_1:68278353-68278372 None:intergenic 60.0%
GCTTGCACGAGGAGAGAAGC+TGG + chr8_1:68279482-68279501 Msa1209670:CDS 60.0%
GCTCGAAGCAACTCCGCCTG+CGG + chr8_1:68277929-68277948 Msa1209670:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 68275758 68282294 68275758 ID=Msa1209670;Name=Msa1209670
chr8_1 mRNA 68275758 68282294 68275758 ID=Msa1209670-mRNA-1;Parent=Msa1209670;Name=Msa1209670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=380|0.42|0.62|0.75|0.57|0.62|8|308|316
chr8_1 exon 68275758 68276330 68275758 ID=Msa1209670-mRNA-1:exon:22677;Parent=Msa1209670-mRNA-1
chr8_1 exon 68276738 68276835 68276738 ID=Msa1209670-mRNA-1:exon:22678;Parent=Msa1209670-mRNA-1
chr8_1 exon 68278075 68278224 68278075 ID=Msa1209670-mRNA-1:exon:22679;Parent=Msa1209670-mRNA-1
chr8_1 exon 68278354 68278419 68278354 ID=Msa1209670-mRNA-1:exon:22680;Parent=Msa1209670-mRNA-1
chr8_1 exon 68279462 68279548 68279462 ID=Msa1209670-mRNA-1:exon:22681;Parent=Msa1209670-mRNA-1
chr8_1 exon 68280468 68280560 68280468 ID=Msa1209670-mRNA-1:exon:22682;Parent=Msa1209670-mRNA-1
chr8_1 exon 68281355 68281448 68281355 ID=Msa1209670-mRNA-1:exon:22683;Parent=Msa1209670-mRNA-1
chr8_1 exon 68281817 68282294 68281817 ID=Msa1209670-mRNA-1:exon:22684;Parent=Msa1209670-mRNA-1
chr8_1 five_prime_UTR 68275758 68276137 68275758 ID=Msa1209670-mRNA-1:five_prime_utr;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68276138 68276330 68276138 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68276738 68276835 68276738 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68278075 68278224 68278075 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68278354 68278419 68278354 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68279462 68279548 68279462 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68280468 68280560 68280468 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68281355 68281448 68281355 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 CDS 68281817 68281986 68281817 ID=Msa1209670-mRNA-1:cds;Parent=Msa1209670-mRNA-1
chr8_1 three_prime_UTR 68281987 68282294 68281987 ID=Msa1209670-mRNA-1:three_prime_utr;Parent=Msa1209670-mRNA-1
Gene Sequence

>Msa1209670

ATGAAGATCACGGCTCTGTTGGTGCTAAAATCCACCGGCGATGGTTCAGAATCGGTGTTTCTCGCAAACGCTTCAGATGTGAGTCACTTCGGTTACTTTCAACGATCCAGCGTTAAAGAGTTCATTGTTTTCGTAGGTCGTACCGTAGCTAATCGTACTCCTCAGGGTCAGCGTCAATCTGTTCAGCACGAAGAGTACAAGGTGCATGCTTACAACAGAAATGGACTTTGTGCAGTGGGATTTATGGATGATCACTATCCAGTTCGTAGTGCGTTTTCTCTTCTCAATCAGGTGCTGGATGAATATATTAAAAGTTTTGGTGAATCATGGAGAAGCATTCAGGCAGACAGTACTGAACCATGGCCCTATTTGAATGAAGCTCTCACGAAATTCCAGGCATGTAAATGCCTCTGCATTATATTGGCTTTAGCTAGAATAATAGACCCTGCAGAGGCTGATAAGTTGCTGAAAATCCAGAGGGAGTTGGACGAAACAAAAATCATCCTTCACAAGACCATTGATAGTGTGCTTGCACGAGGAGAGAAGCTGGACAGTTTAGTTGAGAAGAGTTCTGATTTGAGTGCAGCATCGCAGACTCCAGAAACCTATCAATACCACCTGCCTGAAAAGTATCTTGAAATGCAGTGCTTCAAGGGACTTGGCAATGTCACCAACATTGATTATCAGGTTGGGAAATTTGTTACTGTGTTTGTGGTATTCGTTGTTCCTCTACACAAATCTGTTAAAGGAAGGAATTTTGGGTTTCTGAGAGAAGGAACAGATGTTCTACAAACAGGCGAAAAAAACCAACCAGTGTTGTACAATATTGTAAGCTTTCAAGACCGTCAGTACTATGCGAGCTCGTCTGAATCCTGTTCCGACATTGATGCTGTTGGATGGGGCGAAAATAGCTTCATATGTCTATATCACTCTACATTGTTTGTTTTGTGA

Protein sequence

>Msa1209670

MKITALLVLKSTGDGSESVFLANASDVSHFGYFQRSSVKEFIVFVGRTVANRTPQGQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYIKSFGESWRSIQADSTEPWPYLNEALTKFQACKCLCIILALARIIDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQTPETYQYHLPEKYLEMQCFKGLGNVTNIDYQVGKFVTVFVVFVVPLHKSVKGRNFGFLREGTDVLQTGEKNQPVLYNIVSFQDRQYYASSSESCSDIDAVGWGENSFICLYHSTLFVL*