Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228030 | XP_003596916.1 | 91.954 | 435 | 17 | 1 | 1 | 435 | 1 | 417 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228030 | sp|P42825|DNAJ2_ARATH | 76.201 | 437 | 84 | 3 | 1 | 435 | 1 | 419 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228030 | G7IRG5 | 91.954 | 435 | 17 | 1 | 1 | 435 | 1 | 417 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047250 | Msa0228030 | 0.802928 | 4.445466e-49 | -8.615850e-47 |
| Msa0070430 | Msa0228030 | 0.837024 | 6.631594e-57 | -8.615850e-47 |
| Msa0074750 | Msa0228030 | 0.800675 | 1.289741e-48 | -8.615850e-47 |
| Msa0194720 | Msa0228030 | 0.802877 | 4.553293e-49 | -8.615850e-47 |
| Msa0228030 | Msa0298520 | 0.900502 | 6.873686e-78 | -8.615850e-47 |
| Msa0228030 | Msa0336360 | 0.934098 | 6.830380e-96 | -8.615850e-47 |
| Msa0228030 | Msa0342290 | 0.951574 | 1.532666e-109 | -8.615850e-47 |
| Msa0228030 | Msa0363060 | 0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0228030 | Msa0384670 | 0.802710 | 4.930732e-49 | -8.615850e-47 |
| Msa0228030 | Msa0434570 | 0.809959 | 1.461863e-50 | -8.615850e-47 |
| Msa0228030 | Msa0434770 | 0.810963 | 8.874805e-51 | -8.615850e-47 |
| Msa0228030 | Msa0461590 | 0.802345 | 5.862004e-49 | -8.615850e-47 |
| Msa0228030 | Msa0478580 | 0.809681 | 1.678267e-50 | -8.615850e-47 |
| Msa0228030 | Msa0578090 | 0.803075 | 4.144966e-49 | -8.615850e-47 |
| Msa0228030 | Msa0580640 | 0.830648 | 2.608440e-55 | -8.615850e-47 |
| Msa0228030 | Msa0584550 | 0.806339 | 8.630079e-50 | -8.615850e-47 |
| Msa0228030 | Msa0588120 | 0.834334 | 3.183723e-56 | -8.615850e-47 |
| Msa0228030 | Msa0588220 | 0.810427 | 1.158727e-50 | -8.615850e-47 |
| Msa0228030 | Msa0617260 | 0.817821 | 2.703127e-52 | -8.615850e-47 |
| Msa0228030 | Msa0628500 | 0.807394 | 5.164971e-50 | -8.615850e-47 |
| Msa0228030 | Msa0679100 | 0.800871 | 1.175960e-48 | -8.615850e-47 |
| Msa0228030 | Msa0687230 | 0.803153 | 3.993037e-49 | -8.615850e-47 |
| Msa0228030 | Msa0693430 | 0.806090 | 9.737368e-50 | -8.615850e-47 |
| Msa0228030 | Msa0708770 | 0.996167 | 3.377550e-224 | -8.615850e-47 |
| Msa0228030 | Msa0743530 | 0.815429 | 9.286777e-52 | -8.615850e-47 |
| Msa0228030 | Msa0744090 | 0.850718 | 1.416790e-60 | -8.615850e-47 |
| Msa0228030 | Msa0744100 | 0.819594 | 1.069953e-52 | -8.615850e-47 |
| Msa0228030 | Msa0776750 | 0.802360 | 5.822323e-49 | -8.615850e-47 |
| Msa0228030 | Msa0788110 | 0.852870 | 3.474938e-61 | -8.615850e-47 |
| Msa0228030 | Msa0788120 | 0.828010 | 1.140177e-54 | -8.615850e-47 |
| Msa0228030 | Msa0820200 | 0.841831 | 3.742783e-58 | -8.615850e-47 |
| Msa0228030 | Msa0822170 | 0.812560 | 3.986915e-51 | -8.615850e-47 |
| Msa0228030 | Msa0825270 | 0.827053 | 1.934932e-54 | -8.615850e-47 |
| Msa0228030 | Msa0825280 | 0.847899 | 8.633932e-60 | -8.615850e-47 |
| Msa0228030 | Msa0851470 | 0.853373 | 2.494844e-61 | -8.615850e-47 |
| Msa0228030 | Msa0869010 | 0.806223 | 9.130116e-50 | -8.615850e-47 |
| Msa0228030 | Msa1010460 | 0.852074 | 5.858561e-61 | -8.615850e-47 |
| Msa0228030 | Msa1095620 | 0.803150 | 3.998965e-49 | -8.615850e-47 |
| Msa0228030 | Msa1096550 | 0.849475 | 3.158225e-60 | -8.615850e-47 |
| Msa0228030 | Msa1113590 | 0.820736 | 5.857555e-53 | -8.615850e-47 |
| Msa0228030 | Msa1174850 | 0.802750 | 4.837189e-49 | -8.615850e-47 |
| Msa0228030 | Msa1188560 | 0.803602 | 3.224158e-49 | -8.615850e-47 |
| Msa0228030 | Msa1211350 | 0.801395 | 9.188548e-49 | -8.615850e-47 |
| Msa0228030 | Msa1393800 | 0.817676 | 2.914481e-52 | -8.615850e-47 |
| Msa0228030 | Msa1416260 | 0.800969 | 1.122884e-48 | -8.615850e-47 |
| Msa0228030 | Msa1458030 | 0.860833 | 1.568231e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228030 | MtrunA17_Chr2g0322181 | 91.954 | 435 | 17 | 1 | 1 | 435 | 1 | 417 | 0.0 | 812 |
| Msa0228030 | MtrunA17_Chr4g0025401 | 83.982 | 437 | 47 | 4 | 1 | 435 | 1 | 416 | 0.0 | 644 |
| Msa0228030 | MtrunA17_Chr8g0334811 | 64.932 | 442 | 129 | 6 | 1 | 435 | 1 | 423 | 0.0 | 535 |
| Msa0228030 | MtrunA17_Chr7g0269841 | 33.699 | 365 | 192 | 8 | 14 | 376 | 27 | 343 | 1.85e-49 | 171 |
| Msa0228030 | MtrunA17_Chr4g0040501 | 30.295 | 373 | 216 | 9 | 14 | 376 | 5 | 343 | 2.62e-44 | 157 |
| Msa0228030 | MtrunA17_Chr2g0333221 | 29.815 | 379 | 228 | 12 | 11 | 375 | 68 | 422 | 4.30e-41 | 152 |
| Msa0228030 | MtrunA17_Chr2g0324921 | 29.975 | 407 | 164 | 9 | 14 | 376 | 5 | 334 | 1.99e-40 | 147 |
| Msa0228030 | MtrunA17_Chr2g0282741 | 30.295 | 373 | 211 | 10 | 14 | 376 | 5 | 338 | 2.19e-40 | 147 |
| Msa0228030 | MtrunA17_Chr4g0010781 | 31.522 | 368 | 196 | 11 | 14 | 365 | 87 | 414 | 4.16e-40 | 149 |
| Msa0228030 | MtrunA17_Chr3g0138471 | 30.000 | 370 | 203 | 7 | 14 | 376 | 5 | 325 | 1.91e-39 | 144 |
| Msa0228030 | MtrunA17_Chr3g0123861 | 30.435 | 368 | 225 | 10 | 14 | 375 | 83 | 425 | 1.13e-38 | 144 |
| Msa0228030 | MtrunA17_Chr4g0006391 | 28.534 | 382 | 206 | 7 | 14 | 376 | 5 | 338 | 1.78e-37 | 139 |
| Msa0228030 | MtrunA17_Chr2g0282761 | 30.508 | 354 | 212 | 8 | 14 | 361 | 5 | 330 | 3.69e-37 | 138 |
| Msa0228030 | MtrunA17_Chr6g0478651 | 29.610 | 385 | 229 | 12 | 14 | 383 | 69 | 426 | 4.53e-37 | 142 |
| Msa0228030 | MtrunA17_Chr3g0087741 | 27.979 | 386 | 222 | 15 | 1 | 373 | 80 | 422 | 1.34e-30 | 122 |
| Msa0228030 | MtrunA17_Chr5g0415751 | 36.552 | 145 | 90 | 1 | 232 | 376 | 18 | 160 | 1.68e-28 | 110 |
| Msa0228030 | MtrunA17_Chr5g0426951 | 25.707 | 389 | 226 | 11 | 5 | 373 | 75 | 420 | 3.34e-24 | 104 |
| Msa0228030 | MtrunA17_Chr3g0093111 | 34.752 | 141 | 90 | 1 | 236 | 376 | 172 | 310 | 1.28e-21 | 94.7 |
| Msa0228030 | MtrunA17_Chr3g0124801 | 35.036 | 137 | 86 | 2 | 233 | 368 | 149 | 283 | 4.84e-19 | 87.0 |
| Msa0228030 | MtrunA17_Chr2g0277721 | 32.639 | 144 | 96 | 1 | 233 | 376 | 117 | 259 | 3.16e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228030 | AT5G22060.1 | 76.201 | 437 | 84 | 3 | 1 | 435 | 1 | 419 | 0.0 | 642 |
| Msa0228030 | AT3G44110.1 | 78.132 | 439 | 73 | 4 | 1 | 435 | 1 | 420 | 0.0 | 613 |
| Msa0228030 | AT3G44110.2 | 78.857 | 350 | 54 | 3 | 1 | 349 | 1 | 331 | 6.66e-173 | 488 |
| Msa0228030 | AT3G62600.1 | 33.062 | 369 | 191 | 11 | 14 | 376 | 27 | 345 | 8.18e-48 | 167 |
| Msa0228030 | AT1G80030.4 | 30.585 | 376 | 223 | 11 | 14 | 375 | 76 | 427 | 9.73e-45 | 162 |
| Msa0228030 | AT1G80030.2 | 30.585 | 376 | 223 | 11 | 14 | 375 | 76 | 427 | 1.10e-44 | 162 |
| Msa0228030 | AT1G80030.3 | 30.585 | 376 | 223 | 11 | 14 | 375 | 76 | 427 | 1.10e-44 | 162 |
| Msa0228030 | AT1G80030.1 | 30.585 | 376 | 223 | 11 | 14 | 375 | 76 | 427 | 1.10e-44 | 162 |
| Msa0228030 | AT2G20560.1 | 31.148 | 366 | 215 | 8 | 14 | 376 | 5 | 336 | 8.05e-42 | 151 |
| Msa0228030 | AT5G25530.2 | 30.133 | 375 | 208 | 9 | 14 | 376 | 5 | 337 | 1.42e-40 | 148 |
| Msa0228030 | AT5G48030.1 | 31.135 | 379 | 215 | 13 | 14 | 378 | 95 | 441 | 7.81e-40 | 149 |
| Msa0228030 | AT5G25530.1 | 29.504 | 383 | 208 | 10 | 14 | 376 | 5 | 345 | 1.02e-37 | 140 |
| Msa0228030 | AT2G22360.1 | 29.534 | 386 | 237 | 11 | 14 | 396 | 87 | 440 | 1.75e-37 | 142 |
| Msa0228030 | AT4G28480.1 | 28.763 | 372 | 227 | 8 | 14 | 376 | 5 | 347 | 1.78e-37 | 140 |
| Msa0228030 | AT3G08910.1 | 28.346 | 381 | 190 | 9 | 14 | 376 | 5 | 320 | 5.31e-37 | 138 |
| Msa0228030 | AT4G39960.1 | 28.877 | 374 | 235 | 10 | 11 | 375 | 83 | 434 | 6.97e-37 | 140 |
| Msa0228030 | AT4G39960.2 | 28.877 | 374 | 235 | 10 | 11 | 375 | 83 | 434 | 6.97e-37 | 140 |
| Msa0228030 | AT5G01390.1 | 26.494 | 385 | 205 | 9 | 14 | 376 | 5 | 333 | 7.56e-36 | 135 |
| Msa0228030 | AT3G17830.1 | 27.778 | 378 | 233 | 11 | 12 | 373 | 62 | 415 | 4.99e-29 | 119 |
| Msa0228030 | AT1G28210.3 | 25.693 | 397 | 234 | 11 | 7 | 386 | 42 | 394 | 1.23e-26 | 111 |
| Msa0228030 | AT1G28210.2 | 25.693 | 397 | 234 | 11 | 7 | 386 | 42 | 394 | 1.73e-26 | 111 |
| Msa0228030 | AT1G28210.1 | 25.693 | 397 | 234 | 11 | 7 | 386 | 42 | 394 | 1.73e-26 | 110 |
| Msa0228030 | AT2G20550.1 | 37.241 | 145 | 89 | 1 | 232 | 376 | 141 | 283 | 1.94e-26 | 108 |
| Msa0228030 | AT2G20550.2 | 37.241 | 145 | 89 | 1 | 232 | 376 | 141 | 283 | 1.94e-26 | 108 |
| Msa0228030 | AT3G47940.1 | 36.552 | 145 | 90 | 1 | 232 | 376 | 204 | 346 | 3.81e-26 | 108 |
| Msa0228030 | AT3G47940.1 | 29.577 | 213 | 69 | 5 | 14 | 164 | 5 | 198 | 2.41e-15 | 77.4 |
| Msa0228030 | AT4G28480.2 | 34.694 | 147 | 92 | 2 | 230 | 376 | 147 | 289 | 2.48e-23 | 99.8 |
| Msa0228030 | AT5G01390.2 | 35.000 | 140 | 89 | 1 | 237 | 376 | 138 | 275 | 2.96e-23 | 99.4 |
| Msa0228030 | AT1G59725.1 | 36.429 | 140 | 87 | 1 | 237 | 376 | 191 | 328 | 1.81e-22 | 98.2 |
| Msa0228030 | AT1G59725.1 | 27.179 | 195 | 79 | 5 | 14 | 164 | 5 | 180 | 3.60e-13 | 70.9 |
| Msa0228030 | AT1G10350.1 | 36.552 | 145 | 87 | 3 | 232 | 376 | 207 | 346 | 2.46e-22 | 98.2 |
| Msa0228030 | AT1G11040.1 | 37.500 | 136 | 83 | 1 | 233 | 368 | 291 | 424 | 7.94e-20 | 91.7 |
| Msa0228030 | AT1G44160.1 | 32.593 | 135 | 89 | 1 | 242 | 376 | 221 | 353 | 2.03e-17 | 83.6 |
| Msa0228030 | AT5G01390.4 | 30.964 | 197 | 80 | 6 | 14 | 167 | 5 | 188 | 6.31e-15 | 74.3 |
Find 148 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCACAAAGCTTGAAAATT+AGG | 0.093537 | 2_1:+79414186 | Msa0228030:intron |
| AGGGTTAGTTTGATTGAATT+AGG | 0.256256 | 2_1:+79414523 | Msa0228030:intron |
| TTCGGTGGAGGTGGATTTCC+TGG | 0.267655 | 2_1:+79415175 | Msa0228030:CDS |
| TTCACAAAGCTTGAAAATTA+GGG | 0.287664 | 2_1:+79414187 | Msa0228030:intron |
| TCACCCCTTGAAGGTCTCTT+TGG | 0.287702 | 2_1:+79415347 | Msa0228030:CDS |
| TTGGTAGAATGATATTTGTT+AGG | 0.293516 | 2_1:+79414557 | Msa0228030:CDS |
| CCAATTTGCGCTGACTCATT+TGG | 0.293928 | 2_1:+79416016 | Msa0228030:CDS |
| GGAATGGGTGGTGGCGGTGG+TGG | 0.294243 | 2_1:+79415121 | Msa0228030:CDS |
| TCAGGATCACCACCCTTATC+AGG | 0.295880 | 2_1:-79414374 | None:intergenic |
| CCGTATAAAGATATCCTATA+TGG | 0.308033 | 2_1:+79416615 | Msa0228030:three_prime_UTR |
| CCAAATGAGTCAGCGCAAAT+TGG | 0.320936 | 2_1:-79416016 | None:intergenic |
| TTGATCAGACACCACTGTTT+TGG | 0.322724 | 2_1:-79416560 | None:intergenic |
| TTCACCCTTTCGTTTGAACT+TGG | 0.337178 | 2_1:-79415943 | None:intergenic |
| GAAGATATCTATGAGGCATT+TGG | 0.338997 | 2_1:+79415585 | Msa0228030:CDS |
| GAAGGAATGGGTGGTGGCGG+TGG | 0.340853 | 2_1:+79415118 | Msa0228030:CDS |
| ACTAAATACTATGAGATTCT+TGG | 0.343941 | 2_1:+79414285 | Msa0228030:CDS |
| AACTGAGATACAGGCCTTGC+TGG | 0.344090 | 2_1:-79416336 | None:intergenic |
| CCCCTTGAAGGTCTCTTTGG+AGG | 0.348117 | 2_1:+79415350 | Msa0228030:CDS |
| TTGCAGCCGGACACAGTTAC+TGG | 0.350028 | 2_1:+79415885 | Msa0228030:intron |
| GGGTTAGTTTGATTGAATTA+GGG | 0.350252 | 2_1:+79414524 | Msa0228030:intron |
| CACCACCCATTCCTTCCTTA+AGG | 0.353366 | 2_1:-79415111 | None:intergenic |
| CCATATAGGATATCTTTATA+CGG | 0.354474 | 2_1:-79416615 | None:intergenic |
| TTAGTGTTATCACTCTTCTT+AGG | 0.362823 | 2_1:-79414267 | None:intergenic |
| TGTGCTGGTTGTCAAGGTTC+TGG | 0.368082 | 2_1:+79415559 | Msa0228030:CDS |
| GAATTAGGGTTGTGGGTTGT+TGG | 0.371546 | 2_1:+79414538 | Msa0228030:CDS |
| GAGTTTGGAGATGTCCTTCA+TGG | 0.373998 | 2_1:+79416517 | Msa0228030:three_prime_UTR |
| TATTATCCTATGATTTAGAT+AGG | 0.376273 | 2_1:+79416741 | Msa0228030:three_prime_UTR |
| TCTTGATCAGGTCAAGGCTT+TGG | 0.379949 | 2_1:+79416302 | Msa0228030:CDS |
| TTGCATTTGCTGAATCATAT+TGG | 0.385235 | 2_1:-79415611 | None:intergenic |
| AAAGCTTGAAAATTAGGGTT+AGG | 0.389474 | 2_1:+79414192 | Msa0228030:intron |
| ACCACCCATTCCTTCCTTAA+GGG | 0.391516 | 2_1:-79415110 | None:intergenic |
| TACGCTTTCTTCAAATCATC+GGG | 0.394989 | 2_1:-79414327 | None:intergenic |
| CACCCTTTCGTTTGAACTTG+GGG | 0.398325 | 2_1:-79415941 | None:intergenic |
| TCACCCTTTCGTTTGAACTT+GGG | 0.404206 | 2_1:-79415942 | None:intergenic |
| AAGATATCTATGAGGCATTT+GGG | 0.411623 | 2_1:+79415586 | Msa0228030:CDS |
| ATGAAAGGCCTCTGGTACAT+TGG | 0.411721 | 2_1:-79416228 | None:intergenic |
| TTGTGAAATTTGAAGATGTT+TGG | 0.412460 | 2_1:+79414237 | Msa0228030:exon |
| TGAGTCTCTGTCTCTTGATC+AGG | 0.415051 | 2_1:+79416290 | Msa0228030:CDS |
| TTTGATTGAATTAGGGTTGT+GGG | 0.416295 | 2_1:+79414531 | Msa0228030:CDS |
| GTGCTCAGCAGTAATGAGTT+TGG | 0.416716 | 2_1:+79416502 | Msa0228030:exon |
| AATTATAAAATTAACCATAT+AGG | 0.417706 | 2_1:-79416629 | None:intergenic |
| ACATCCTTGCAATGAATGTA+AGG | 0.418761 | 2_1:+79415633 | Msa0228030:CDS |
| CTTTGGAGGATCTTTACCTT+GGG | 0.422824 | 2_1:+79415364 | Msa0228030:CDS |
| AGAGCTTGCACAAGCTTATG+AGG | 0.426543 | 2_1:+79415036 | Msa0228030:CDS |
| ATGTCTGTCAACTGAGATAC+AGG | 0.432545 | 2_1:-79416345 | None:intergenic |
| AAAGATGAAAAGATGTCAAA+TGG | 0.433471 | 2_1:-79415151 | None:intergenic |
| GTTTGATTGAATTAGGGTTG+TGG | 0.437537 | 2_1:+79414530 | Msa0228030:CDS |
| CCTTCTCTCCCTTGCACTGT+GGG | 0.438316 | 2_1:-79415690 | None:intergenic |
| TCATATACCTCACGCTTCTC+AGG | 0.445588 | 2_1:-79415070 | None:intergenic |
| TGGTAGAATGATATTTGTTA+GGG | 0.445997 | 2_1:+79414558 | Msa0228030:CDS |
| TCCCTCACTGAGGCTTTATG+TGG | 0.451630 | 2_1:+79415990 | Msa0228030:CDS |
| TGCAATGAATGTAAGGGTAC+TGG | 0.456888 | 2_1:+79415640 | Msa0228030:CDS |
| TCATCTTTCTTCGGTGGAGG+TGG | 0.461355 | 2_1:+79415166 | Msa0228030:CDS |
| GTATGGTGAAGATGCCCTTA+AGG | 0.462316 | 2_1:+79415096 | Msa0228030:CDS |
| GAGATAGTGAATGATTATCT+TGG | 0.463868 | 2_1:+79416852 | Msa0228030:three_prime_UTR |
| GGTTTGATTTAATCAATAGT+TGG | 0.465413 | 2_1:-79416046 | None:intergenic |
| ATACGCTTTCTTCAAATCAT+CGG | 0.468985 | 2_1:-79414328 | None:intergenic |
| CGTGAGGTATATGATCAGTA+TGG | 0.471347 | 2_1:+79415079 | Msa0228030:CDS |
| TCTTTGGAGGATCTTTACCT+TGG | 0.472410 | 2_1:+79415363 | Msa0228030:CDS |
| GATTAAGAATCATCCTGATA+AGG | 0.476346 | 2_1:+79414361 | Msa0228030:CDS |
| GGATGTCGTTCACCCCTTGA+AGG | 0.478745 | 2_1:+79415338 | Msa0228030:CDS |
| AGATCGATGCCCACAGTGCA+AGG | 0.481792 | 2_1:+79415681 | Msa0228030:CDS |
| ATTAAGAATCATCCTGATAA+GGG | 0.485570 | 2_1:+79414362 | Msa0228030:CDS |
| TACAGGAAAGGATCAAAGTC+TGG | 0.495336 | 2_1:+79415523 | Msa0228030:intron |
| ACTAACCTAGGGGAAATAAT+CGG | 0.496006 | 2_1:-79416791 | None:intergenic |
| TGCCCTTCATGAAAGGCCTC+TGG | 0.498481 | 2_1:-79416236 | None:intergenic |
| CCAGGCTTGACAACTTCTCC+AGG | 0.499453 | 2_1:-79416068 | None:intergenic |
| ATATCTCCAGTAACTGTGTC+CGG | 0.501009 | 2_1:-79415891 | None:intergenic |
| GGTGCTTCGATGACCTGTGC+TGG | 0.505989 | 2_1:+79415544 | Msa0228030:CDS |
| GATAATAAAGCATGCAAGGA+AGG | 0.508424 | 2_1:-79416725 | None:intergenic |
| CTTGAAGTTCATGTTGAGAA+GGG | 0.510818 | 2_1:+79415733 | Msa0228030:CDS |
| GCATCGATCTTTGTCACTGA+TGG | 0.515086 | 2_1:-79415668 | None:intergenic |
| ATCCTCCAAAGAGACCTTCA+AGG | 0.518323 | 2_1:-79415352 | None:intergenic |
| AAGGAAGGAATGGGTGGTGG+CGG | 0.520461 | 2_1:+79415115 | Msa0228030:CDS |
| ATAATGAATTACACTAACCT+AGG | 0.520955 | 2_1:-79416803 | None:intergenic |
| TACAAGGCAATCAATGATGA+AGG | 0.521364 | 2_1:+79416201 | Msa0228030:CDS |
| TTTGTACCTATCTAAATCAT+AGG | 0.526396 | 2_1:-79416747 | None:intergenic |
| CACCCCAAGTTCAAACGAAA+GGG | 0.528668 | 2_1:+79415939 | Msa0228030:CDS |
| AGATGCCCTTAAGGAAGGAA+TGG | 0.532671 | 2_1:+79415105 | Msa0228030:CDS |
| TGATCAAGAGACAGAGACTC+AGG | 0.533617 | 2_1:-79416288 | None:intergenic |
| CCTGGAGAAGTTGTCAAGCC+TGG | 0.534032 | 2_1:+79416068 | Msa0228030:CDS |
| GGTCAGAAGATTACCTTCCC+TGG | 0.534089 | 2_1:+79415766 | Msa0228030:CDS |
| TTCATCAGCTTCACCAGGGA+AGG | 0.534704 | 2_1:-79415779 | None:intergenic |
| TAACACATACCCCTTGCACT+TGG | 0.540192 | 2_1:-79415427 | None:intergenic |
| ACTTGAAGTTCATGTTGAGA+AGG | 0.543623 | 2_1:+79415732 | Msa0228030:CDS |
| TAATGAATTACACTAACCTA+GGG | 0.544568 | 2_1:-79416802 | None:intergenic |
| CTTAAGGAAGGAATGGGTGG+TGG | 0.547958 | 2_1:+79415112 | Msa0228030:CDS |
| TGTCTTGTGCTCCAAGTGCA+AGG | 0.549478 | 2_1:+79415416 | Msa0228030:CDS |
| TACCAGAGGCCTTTCATGAA+GGG | 0.550239 | 2_1:+79416234 | Msa0228030:CDS |
| TCTGTCTCTTGATCAGGTCA+AGG | 0.553837 | 2_1:+79416296 | Msa0228030:CDS |
| GATGCCCTTAAGGAAGGAAT+GGG | 0.556456 | 2_1:+79415106 | Msa0228030:CDS |
| CCCACAGTGCAAGGGAGAGA+AGG | 0.557002 | 2_1:+79415690 | Msa0228030:CDS |
| CGTCTTTGTACTTCAACAGA+AGG | 0.558455 | 2_1:+79415914 | Msa0228030:CDS |
| TTGAAGAAGAGACAAGAAGA+AGG | 0.558667 | 2_1:+79416412 | Msa0228030:CDS |
| TAAAGCTTGCCCTTCATGAA+AGG | 0.559348 | 2_1:-79416243 | None:intergenic |
| GTCTTGTGCTCCAAGTGCAA+GGG | 0.560067 | 2_1:+79415417 | Msa0228030:CDS |
| ACCGCTTCATCAGCTTCACC+AGG | 0.560539 | 2_1:-79415784 | None:intergenic |
| ATGACCTGTGCTGGTTGTCA+AGG | 0.561075 | 2_1:+79415553 | Msa0228030:CDS |
| GTTGAGAAGGGGATGCAGAA+TGG | 0.563375 | 2_1:+79415745 | Msa0228030:CDS |
| TGGTTACGCAGATTCATACA+AGG | 0.564992 | 2_1:+79416185 | Msa0228030:intron |
| ATAAAGCATGCAAGGAAGGA+AGG | 0.565798 | 2_1:-79416721 | None:intergenic |
| GTACCAGAGGCCTTTCATGA+AGG | 0.566111 | 2_1:+79416233 | Msa0228030:CDS |
| ATAGGATAATAAAGCATGCA+AGG | 0.566575 | 2_1:-79416729 | None:intergenic |
| ACTGAGATACAGGCCTTGCT+GGG | 0.567469 | 2_1:-79416335 | None:intergenic |
| GGTGAAGATGCCCTTAAGGA+AGG | 0.569050 | 2_1:+79415100 | Msa0228030:CDS |
| TCAGTTGACAGACATGGAGC+TGG | 0.570239 | 2_1:+79416353 | Msa0228030:CDS |
| GTGGTAGTAGCAGAGGAAGA+AGG | 0.572018 | 2_1:+79415301 | Msa0228030:CDS |
| ACAGGTGGTGGTAGTAGCAG+AGG | 0.575959 | 2_1:+79415294 | Msa0228030:intron |
| CCCTGGTGAAGCTGATGAAG+CGG | 0.582550 | 2_1:+79415783 | Msa0228030:CDS |
| AGAACCTTGACAACCAGCAC+AGG | 0.585983 | 2_1:-79415557 | None:intergenic |
| TGGAGACAATTCTCCCAGCA+AGG | 0.587524 | 2_1:+79416322 | Msa0228030:CDS |
| ACACCCCAAGTTCAAACGAA+AGG | 0.592574 | 2_1:+79415938 | Msa0228030:CDS |
| TGTACTCTTTGAGCACCACC+AGG | 0.594168 | 2_1:-79416477 | None:intergenic |
| AAGCTAAAACAAATCCATGA+AGG | 0.594957 | 2_1:-79416531 | None:intergenic |
| TCCTCCAAAGAGACCTTCAA+GGG | 0.596017 | 2_1:-79415351 | None:intergenic |
| TTGAAGTTCATGTTGAGAAG+GGG | 0.603095 | 2_1:+79415734 | Msa0228030:CDS |
| GTACCCTTACATTCATTGCA+AGG | 0.605875 | 2_1:-79415637 | None:intergenic |
| AGCTTTGTTGGCCAAAACAG+TGG | 0.607380 | 2_1:+79416549 | Msa0228030:three_prime_UTR |
| TTTCACCGATTATTTCCCCT+AGG | 0.611137 | 2_1:+79416786 | Msa0228030:three_prime_UTR |
| CAGGCTTGACAACTTCTCCA+GGG | 0.612975 | 2_1:-79416067 | None:intergenic |
| TAAGGGTGGTGATCCTGAAA+AGG | 0.613088 | 2_1:+79414379 | Msa0228030:CDS |
| TGTATCTCAGTTGACAGACA+TGG | 0.616220 | 2_1:+79416347 | Msa0228030:CDS |
| GCCCTTAAGGAAGGAATGGG+TGG | 0.620209 | 2_1:+79415109 | Msa0228030:CDS |
| GATGAGGATGATGAAATGCC+TGG | 0.624859 | 2_1:+79416459 | Msa0228030:CDS |
| AAGGCAGCAAGCTCAGCAAG+AGG | 0.624868 | 2_1:+79416431 | Msa0228030:CDS |
| ACCTTCTCTCCCTTGCACTG+TGG | 0.630501 | 2_1:-79415691 | None:intergenic |
| GATCGATGCCCACAGTGCAA+GGG | 0.633588 | 2_1:+79415682 | Msa0228030:CDS |
| AAAGCTTCTTAGATGTCCCA+AGG | 0.634241 | 2_1:-79415380 | None:intergenic |
| TCTTGTGCTCCAAGTGCAAG+GGG | 0.635966 | 2_1:+79415418 | Msa0228030:CDS |
| CTATTGATTAAATCAAACCC+TGG | 0.637960 | 2_1:+79416050 | Msa0228030:CDS |
| AGAGGAAGAAGGCAGAGACG+TGG | 0.638556 | 2_1:+79415312 | Msa0228030:CDS |
| CATCCTTGCAATGAATGTAA+GGG | 0.643345 | 2_1:+79415634 | Msa0228030:CDS |
| AAGAAGGCAGAGACGTGGTG+AGG | 0.643979 | 2_1:+79415317 | Msa0228030:CDS |
| TCAGCAAGAGGCATATGATG+AGG | 0.654664 | 2_1:+79416443 | Msa0228030:CDS |
| ACCACATAAAGCCTCAGTGA+GGG | 0.659830 | 2_1:-79415991 | None:intergenic |
| CATGGAGCTGGATGAGTGTG+AGG | 0.667513 | 2_1:+79416365 | Msa0228030:CDS |
| GATCAAGAGACAGAGACTCA+GGG | 0.667543 | 2_1:-79416287 | None:intergenic |
| AAGGAATGCCAATGTACCAG+AGG | 0.667557 | 2_1:+79416220 | Msa0228030:CDS |
| CTGGTATGAAGATATCTATG+AGG | 0.673684 | 2_1:+79415578 | Msa0228030:CDS |
| GAGTGATCCTGAGAAGCGTG+AGG | 0.676105 | 2_1:+79415063 | Msa0228030:CDS |
| AAGAATCATCCTGATAAGGG+TGG | 0.677133 | 2_1:+79414365 | Msa0228030:CDS |
| CCGCTTCATCAGCTTCACCA+GGG | 0.690995 | 2_1:-79415783 | None:intergenic |
| GCTTTACATTCACTTCACAG+TGG | 0.719754 | 2_1:+79416260 | Msa0228030:CDS |
| CCTCCAAAGAGACCTTCAAG+GGG | 0.727234 | 2_1:-79415350 | None:intergenic |
| AACCACATAAAGCCTCAGTG+AGG | 0.740190 | 2_1:-79415992 | None:intergenic |
| AATGAATTACACTAACCTAG+GGG | 0.742373 | 2_1:-79416801 | None:intergenic |
| GCACACATTGTCCCTCACTG+AGG | 0.763892 | 2_1:+79415980 | Msa0228030:CDS |
| GAGGATGATGAAATGCCTGG+TGG | 0.804018 | 2_1:+79416462 | Msa0228030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAGATTTTTAAATTA+AGG | + | chr2_1:79414601-79414620 | Msa0228030:intron | 10.0% |
| !!! | ATTTGAGATTTTTAAATTAA+GGG | + | chr2_1:79414602-79414621 | Msa0228030:intron | 10.0% |
| !! | AATTATAAAATTAACCATAT+AGG | - | chr2_1:79416632-79416651 | None:intergenic | 10.0% |
| !! | TTATCTTTGAATTTGATTAT+TGG | + | chr2_1:79414412-79414431 | Msa0228030:intron | 15.0% |
| !!! | TTTGAGATTTTTAAATTAAG+GGG | + | chr2_1:79414603-79414622 | Msa0228030:intron | 15.0% |
| !!! | AAAAGTGATTTTTTTACTAT+AGG | + | chr2_1:79414643-79414662 | Msa0228030:intron | 15.0% |
| !! | ATTGAATTATATAATTGTTG+TGG | + | chr2_1:79414803-79414822 | Msa0228030:intron | 15.0% |
| !! | ATTAGTTAATTGATGAAATT+AGG | + | chr2_1:79414976-79414995 | Msa0228030:intron | 15.0% |
| !! | TTAGTTAATTGATGAAATTA+GGG | + | chr2_1:79414977-79414996 | Msa0228030:intron | 15.0% |
| !!! | CTTGTTTGTTATTTTAATTT+AGG | + | chr2_1:79415206-79415225 | Msa0228030:intron | 15.0% |
| !!! | TTATTTTAATTTAGGAGATT+AGG | + | chr2_1:79415214-79415233 | Msa0228030:intron | 15.0% |
| !!! | TATTTTAATTTAGGAGATTA+GGG | + | chr2_1:79415215-79415234 | Msa0228030:intron | 15.0% |
| !!! | AAAATTTTAAAGATACAATC+AGG | + | chr2_1:79416830-79416849 | Msa0228030:three_prime_UTR | 15.0% |
| !!! | TAAAAAAAAACAACCTTTTC+AGG | - | chr2_1:79414395-79414414 | None:intergenic | 20.0% |
| !!! | ATTGAATTTGATAATTGTTG+TGG | + | chr2_1:79414476-79414495 | Msa0228030:intron | 20.0% |
| !!! | AATAGTGATTAGTTGAATTT+AGG | + | chr2_1:79414503-79414522 | Msa0228030:intron | 20.0% |
| !!! | ATAGTGATTAGTTGAATTTA+GGG | + | chr2_1:79414504-79414523 | Msa0228030:intron | 20.0% |
| !!! | ATTGTTAGTTGTATTGATAT+TGG | + | chr2_1:79414851-79414870 | Msa0228030:intron | 20.0% |
| !!! | TTGTTAGTTGTATTGATATT+GGG | + | chr2_1:79414852-79414871 | Msa0228030:intron | 20.0% |
| !!! | AATTGTGATTAGTTAGTTTT+AGG | + | chr2_1:79414896-79414915 | Msa0228030:intron | 20.0% |
| !!! | ATTGTGATTAGTTAGTTTTA+GGG | + | chr2_1:79414897-79414916 | Msa0228030:intron | 20.0% |
| !! | AAAAATTGCTTAATAAGAGA+GGG | - | chr2_1:79416700-79416719 | None:intergenic | 20.0% |
| !! | AAAAAATTGCTTAATAAGAG+AGG | - | chr2_1:79416701-79416720 | None:intergenic | 20.0% |
| !! | TATTATCCTATGATTTAGAT+AGG | + | chr2_1:79416741-79416760 | Msa0228030:three_prime_UTR | 20.0% |
| !! | ATTCTTTTGTTAGATCTCAA+CGG | - | chr2_1:79414165-79414184 | None:intergenic | 25.0% |
| ! | ATTCACAAAGCTTGAAAATT+AGG | + | chr2_1:79414186-79414205 | Msa0228030:intron | 25.0% |
| ! | TTCACAAAGCTTGAAAATTA+GGG | + | chr2_1:79414187-79414206 | Msa0228030:intron | 25.0% |
| ! | TTGTGAAATTTGAAGATGTT+TGG | + | chr2_1:79414237-79414256 | Msa0228030:exon | 25.0% |
| ! | ACTAAATACTATGAGATTCT+TGG | + | chr2_1:79414285-79414304 | Msa0228030:CDS | 25.0% |
| ! | ATTAAGAATCATCCTGATAA+GGG | + | chr2_1:79414362-79414381 | Msa0228030:CDS | 25.0% |
| ! | GATTATTGGATTATCTGATT+TGG | + | chr2_1:79414426-79414445 | Msa0228030:intron | 25.0% |
| ! | TTGGTAGAATGATATTTGTT+AGG | + | chr2_1:79414557-79414576 | Msa0228030:CDS | 25.0% |
| !! | TGGTAGAATGATATTTGTTA+GGG | + | chr2_1:79414558-79414577 | Msa0228030:CDS | 25.0% |
| !!! | TTGGTATTGATTATGCAATT+AGG | + | chr2_1:79414725-79414744 | Msa0228030:intron | 25.0% |
| ! | ATTGATTATGCAATTAGGAT+TGG | + | chr2_1:79414730-79414749 | Msa0228030:intron | 25.0% |
| ! | ATTGGGTTATATAATTGTTG+TGG | + | chr2_1:79414869-79414888 | Msa0228030:intron | 25.0% |
| ! | AAAGATGAAAAGATGTCAAA+TGG | - | chr2_1:79415154-79415173 | None:intergenic | 25.0% |
| ! | ATCATATTGTATTTGTGAAC+AGG | + | chr2_1:79415276-79415295 | Msa0228030:intron | 25.0% |
| !!! | GTTTGTTGGTATTTTTCTAA+TGG | + | chr2_1:79415468-79415487 | Msa0228030:intron | 25.0% |
| !! | GGTTTGATTTAATCAATAGT+TGG | - | chr2_1:79416049-79416068 | None:intergenic | 25.0% |
| !! | TGCTGAAATTTTCAATCTTT+TGG | + | chr2_1:79416165-79416184 | Msa0228030:intron | 25.0% |
| ! | CCATATAGGATATCTTTATA+CGG | - | chr2_1:79416618-79416637 | None:intergenic | 25.0% |
| ! | TTTGTACCTATCTAAATCAT+AGG | - | chr2_1:79416750-79416769 | None:intergenic | 25.0% |
| ! | TAATGAATTACACTAACCTA+GGG | - | chr2_1:79416805-79416824 | None:intergenic | 25.0% |
| ! | ATAATGAATTACACTAACCT+AGG | - | chr2_1:79416806-79416825 | None:intergenic | 25.0% |
| AAAGCTTGAAAATTAGGGTT+AGG | + | chr2_1:79414192-79414211 | Msa0228030:intron | 30.0% | |
| TTAGTGTTATCACTCTTCTT+AGG | - | chr2_1:79414270-79414289 | None:intergenic | 30.0% | |
| ATACGCTTTCTTCAAATCAT+CGG | - | chr2_1:79414331-79414350 | None:intergenic | 30.0% | |
| GATTAAGAATCATCCTGATA+AGG | + | chr2_1:79414361-79414380 | Msa0228030:CDS | 30.0% | |
| !! | AGGGTTAGTTTGATTGAATT+AGG | + | chr2_1:79414523-79414542 | Msa0228030:intron | 30.0% |
| !! | GGGTTAGTTTGATTGAATTA+GGG | + | chr2_1:79414524-79414543 | Msa0228030:intron | 30.0% |
| TTTGATTGAATTAGGGTTGT+GGG | + | chr2_1:79414531-79414550 | Msa0228030:CDS | 30.0% | |
| TTGTTAGGGTTTATTTGTCA+TGG | + | chr2_1:79414572-79414591 | Msa0228030:intron | 30.0% | |
| AATATCAATCCCATTAGCTA+CGG | - | chr2_1:79414673-79414692 | None:intergenic | 30.0% | |
| ! | TTACCCAATTGATTGTTGTT+AGG | + | chr2_1:79414698-79414717 | Msa0228030:intron | 30.0% |
| ACACCTAACAACAATCAATT+GGG | - | chr2_1:79414704-79414723 | None:intergenic | 30.0% | |
| TACACCTAACAACAATCAAT+TGG | - | chr2_1:79414705-79414724 | None:intergenic | 30.0% | |
| ! | TTGATTGTTGTTAGGTGTAT+TGG | + | chr2_1:79414706-79414725 | Msa0228030:intron | 30.0% |
| AAAATCAAACTACCATAACC+CGG | - | chr2_1:79414943-79414962 | None:intergenic | 30.0% | |
| ! | GACATCTTTTCATCTTTCTT+CGG | + | chr2_1:79415157-79415176 | Msa0228030:CDS | 30.0% |
| ATATTGTATTTGTGAACAGG+TGG | + | chr2_1:79415279-79415298 | Msa0228030:intron | 30.0% | |
| ! | TTGGTATTTTTCTAATGGCT+CGG | + | chr2_1:79415473-79415492 | Msa0228030:intron | 30.0% |
| !! | TTGTTGATTGGTTTGATTAC+AGG | + | chr2_1:79415506-79415525 | Msa0228030:intron | 30.0% |
| ! | AAGATATCTATGAGGCATTT+GGG | + | chr2_1:79415586-79415605 | Msa0228030:CDS | 30.0% |
| ! | TTGCATTTGCTGAATCATAT+TGG | - | chr2_1:79415614-79415633 | None:intergenic | 30.0% |
| ! | CTATTGATTAAATCAAACCC+TGG | + | chr2_1:79416050-79416069 | Msa0228030:CDS | 30.0% |
| ATGTGAATAATCTACATACC+AGG | - | chr2_1:79416089-79416108 | None:intergenic | 30.0% | |
| GTATGTAGATTATTCACATC+TGG | + | chr2_1:79416090-79416109 | Msa0228030:intron | 30.0% | |
| !!! | GACTGAATTTTTTTCGTCTT+TGG | + | chr2_1:79416142-79416161 | Msa0228030:intron | 30.0% |
| AAGCTAAAACAAATCCATGA+AGG | - | chr2_1:79416534-79416553 | None:intergenic | 30.0% | |
| !!! | TGGATTTGTTTTAGCTTTGT+TGG | + | chr2_1:79416537-79416556 | Msa0228030:three_prime_UTR | 30.0% |
| CCGTATAAAGATATCCTATA+TGG | + | chr2_1:79416615-79416634 | Msa0228030:three_prime_UTR | 30.0% | |
| ATAGGATAATAAAGCATGCA+AGG | - | chr2_1:79416732-79416751 | None:intergenic | 30.0% | |
| AATGAATTACACTAACCTAG+GGG | - | chr2_1:79416804-79416823 | None:intergenic | 30.0% | |
| TACGCTTTCTTCAAATCATC+GGG | - | chr2_1:79414330-79414349 | None:intergenic | 35.0% | |
| GTTTGATTGAATTAGGGTTG+TGG | + | chr2_1:79414530-79414549 | Msa0228030:CDS | 35.0% | |
| ATATCAATCCCATTAGCTAC+GGG | - | chr2_1:79414672-79414691 | None:intergenic | 35.0% | |
| AGGGTAGTGTGATTGAATTA+AGG | + | chr2_1:79414916-79414935 | Msa0228030:intron | 35.0% | |
| AAATCAAACTACCATAACCC+GGG | - | chr2_1:79414942-79414961 | None:intergenic | 35.0% | |
| !! | GGGTTATGGTAGTTTGATTT+TGG | + | chr2_1:79414942-79414961 | Msa0228030:intron | 35.0% |
| ! | ATCTTTTCATCTTTCTTCGG+TGG | + | chr2_1:79415160-79415179 | Msa0228030:CDS | 35.0% |
| AACAAACAAGAAACCATACC+AGG | - | chr2_1:79415196-79415215 | None:intergenic | 35.0% | |
| GGAGTTCTTACATTGTTGAT+TGG | + | chr2_1:79415494-79415513 | Msa0228030:intron | 35.0% | |
| !! | GATTGGTTTGATTACAGGAA+AGG | + | chr2_1:79415511-79415530 | Msa0228030:intron | 35.0% |
| CTGGTATGAAGATATCTATG+AGG | + | chr2_1:79415578-79415597 | Msa0228030:CDS | 35.0% | |
| ! | GAAGATATCTATGAGGCATT+TGG | + | chr2_1:79415585-79415604 | Msa0228030:CDS | 35.0% |
| ACATCCTTGCAATGAATGTA+AGG | + | chr2_1:79415633-79415652 | Msa0228030:CDS | 35.0% | |
| CATCCTTGCAATGAATGTAA+GGG | + | chr2_1:79415634-79415653 | Msa0228030:CDS | 35.0% | |
| ACTTGAAGTTCATGTTGAGA+AGG | + | chr2_1:79415732-79415751 | Msa0228030:CDS | 35.0% | |
| CTTGAAGTTCATGTTGAGAA+GGG | + | chr2_1:79415733-79415752 | Msa0228030:CDS | 35.0% | |
| TTGAAGTTCATGTTGAGAAG+GGG | + | chr2_1:79415734-79415753 | Msa0228030:CDS | 35.0% | |
| TACAAGGCAATCAATGATGA+AGG | + | chr2_1:79416201-79416220 | Msa0228030:CDS | 35.0% | |
| TTGAAGAAGAGACAAGAAGA+AGG | + | chr2_1:79416412-79416431 | Msa0228030:CDS | 35.0% | |
| ! | CTGCAATTTTGCAAACACAA+GGG | - | chr2_1:79416659-79416678 | None:intergenic | 35.0% |
| GATAATAAAGCATGCAAGGA+AGG | - | chr2_1:79416728-79416747 | None:intergenic | 35.0% | |
| ACTAACCTAGGGGAAATAAT+CGG | - | chr2_1:79416794-79416813 | None:intergenic | 35.0% | |
| AAGAATCATCCTGATAAGGG+TGG | + | chr2_1:79414365-79414384 | Msa0228030:CDS | 40.0% | |
| TATCAATCCCATTAGCTACG+GGG | - | chr2_1:79414671-79414690 | None:intergenic | 40.0% | |
| AGTGTGATTGAATTAAGGCC+CGG | + | chr2_1:79414921-79414940 | Msa0228030:intron | 40.0% | |
| CGTGAGGTATATGATCAGTA+TGG | + | chr2_1:79415079-79415098 | Msa0228030:CDS | 40.0% | |
| ! | TTTTCATCTTTCTTCGGTGG+AGG | + | chr2_1:79415163-79415182 | Msa0228030:CDS | 40.0% |
| TTGTATTTGTGAACAGGTGG+TGG | + | chr2_1:79415282-79415301 | Msa0228030:intron | 40.0% | |
| ! | TCTTTGGAGGATCTTTACCT+TGG | + | chr2_1:79415363-79415382 | Msa0228030:CDS | 40.0% |
| ! | CTTTGGAGGATCTTTACCTT+GGG | + | chr2_1:79415364-79415383 | Msa0228030:CDS | 40.0% |
| AAAGCTTCTTAGATGTCCCA+AGG | - | chr2_1:79415383-79415402 | None:intergenic | 40.0% | |
| AGGTCTATCTGCATGTTTGT+TGG | + | chr2_1:79415454-79415473 | Msa0228030:intron | 40.0% | |
| TACAGGAAAGGATCAAAGTC+TGG | + | chr2_1:79415523-79415542 | Msa0228030:intron | 40.0% | |
| GTACCCTTACATTCATTGCA+AGG | - | chr2_1:79415640-79415659 | None:intergenic | 40.0% | |
| ! | TGCAATGAATGTAAGGGTAC+TGG | + | chr2_1:79415640-79415659 | Msa0228030:CDS | 40.0% |
| ! | TACAGTTCCTTAGTTTGAGC+TGG | + | chr2_1:79415820-79415839 | Msa0228030:intron | 40.0% |
| CAACAATCCAGCTCAAACTA+AGG | - | chr2_1:79415830-79415849 | None:intergenic | 40.0% | |
| CTTATTGTTTGTCTTGCAGC+CGG | + | chr2_1:79415872-79415891 | Msa0228030:intron | 40.0% | |
| ATATCTCCAGTAACTGTGTC+CGG | - | chr2_1:79415894-79415913 | None:intergenic | 40.0% | |
| CGTCTTTGTACTTCAACAGA+AGG | + | chr2_1:79415914-79415933 | Msa0228030:CDS | 40.0% | |
| TCACCCTTTCGTTTGAACTT+GGG | - | chr2_1:79415945-79415964 | None:intergenic | 40.0% | |
| TTCACCCTTTCGTTTGAACT+TGG | - | chr2_1:79415946-79415965 | None:intergenic | 40.0% | |
| TGGTTACGCAGATTCATACA+AGG | + | chr2_1:79416185-79416204 | Msa0228030:intron | 40.0% | |
| TAAAGCTTGCCCTTCATGAA+AGG | - | chr2_1:79416246-79416265 | None:intergenic | 40.0% | |
| GCTTTACATTCACTTCACAG+TGG | + | chr2_1:79416260-79416279 | Msa0228030:CDS | 40.0% | |
| ATGTCTGTCAACTGAGATAC+AGG | - | chr2_1:79416348-79416367 | None:intergenic | 40.0% | |
| TGTATCTCAGTTGACAGACA+TGG | + | chr2_1:79416347-79416366 | Msa0228030:CDS | 40.0% | |
| ! | TTGATCAGACACCACTGTTT+TGG | - | chr2_1:79416563-79416582 | None:intergenic | 40.0% |
| ! | GCTGCAATTTTGCAAACACA+AGG | - | chr2_1:79416660-79416679 | None:intergenic | 40.0% |
| ATAAAGCATGCAAGGAAGGA+AGG | - | chr2_1:79416724-79416743 | None:intergenic | 40.0% | |
| ! | TTTCACCGATTATTTCCCCT+AGG | + | chr2_1:79416786-79416805 | Msa0228030:three_prime_UTR | 40.0% |
| TAAGGGTGGTGATCCTGAAA+AGG | + | chr2_1:79414379-79414398 | Msa0228030:CDS | 45.0% | |
| ! | GAATTAGGGTTGTGGGTTGT+TGG | + | chr2_1:79414538-79414557 | Msa0228030:CDS | 45.0% |
| TATAGGATCCCCGTAGCTAA+TGG | + | chr2_1:79414660-79414679 | Msa0228030:intron | 45.0% | |
| ATAGGATCCCCGTAGCTAAT+GGG | + | chr2_1:79414661-79414680 | Msa0228030:intron | 45.0% | |
| GTGTGATTGAATTAAGGCCC+GGG | + | chr2_1:79414922-79414941 | Msa0228030:intron | 45.0% | |
| TTGAATTAAGGCCCGGGTTA+TGG | + | chr2_1:79414928-79414947 | Msa0228030:intron | 45.0% | |
| AGAGCTTGCACAAGCTTATG+AGG | + | chr2_1:79415036-79415055 | Msa0228030:CDS | 45.0% | |
| TCATATACCTCACGCTTCTC+AGG | - | chr2_1:79415073-79415092 | None:intergenic | 45.0% | |
| GTATGGTGAAGATGCCCTTA+AGG | + | chr2_1:79415096-79415115 | Msa0228030:CDS | 45.0% | |
| AGATGCCCTTAAGGAAGGAA+TGG | + | chr2_1:79415105-79415124 | Msa0228030:CDS | 45.0% | |
| GATGCCCTTAAGGAAGGAAT+GGG | + | chr2_1:79415106-79415125 | Msa0228030:CDS | 45.0% | |
| ACCACCCATTCCTTCCTTAA+GGG | - | chr2_1:79415113-79415132 | None:intergenic | 45.0% | |
| TCCTCCAAAGAGACCTTCAA+GGG | - | chr2_1:79415354-79415373 | None:intergenic | 45.0% | |
| ATCCTCCAAAGAGACCTTCA+AGG | - | chr2_1:79415355-79415374 | None:intergenic | 45.0% | |
| TAACACATACCCCTTGCACT+TGG | - | chr2_1:79415430-79415449 | None:intergenic | 45.0% | |
| ! | AGTGCAAGGGGTATGTGTTA+TGG | + | chr2_1:79415430-79415449 | Msa0228030:intron | 45.0% |
| ! | CAAGGGGTATGTGTTATGGA+AGG | + | chr2_1:79415434-79415453 | Msa0228030:intron | 45.0% |
| ! | GCATCGATCTTTGTCACTGA+TGG | - | chr2_1:79415671-79415690 | None:intergenic | 45.0% |
| ACACCCCAAGTTCAAACGAA+AGG | + | chr2_1:79415938-79415957 | Msa0228030:CDS | 45.0% | |
| CACCCCAAGTTCAAACGAAA+GGG | + | chr2_1:79415939-79415958 | Msa0228030:CDS | 45.0% | |
| CACCCTTTCGTTTGAACTTG+GGG | - | chr2_1:79415944-79415963 | None:intergenic | 45.0% | |
| ACCACATAAAGCCTCAGTGA+GGG | - | chr2_1:79415994-79416013 | None:intergenic | 45.0% | |
| AACCACATAAAGCCTCAGTG+AGG | - | chr2_1:79415995-79416014 | None:intergenic | 45.0% | |
| CCAAATGAGTCAGCGCAAAT+TGG | - | chr2_1:79416019-79416038 | None:intergenic | 45.0% | |
| !! | CCAATTTGCGCTGACTCATT+TGG | + | chr2_1:79416016-79416035 | Msa0228030:CDS | 45.0% |
| AAGGAATGCCAATGTACCAG+AGG | + | chr2_1:79416220-79416239 | Msa0228030:CDS | 45.0% | |
| ATGAAAGGCCTCTGGTACAT+TGG | - | chr2_1:79416231-79416250 | None:intergenic | 45.0% | |
| TACCAGAGGCCTTTCATGAA+GGG | + | chr2_1:79416234-79416253 | Msa0228030:CDS | 45.0% | |
| GATCAAGAGACAGAGACTCA+GGG | - | chr2_1:79416290-79416309 | None:intergenic | 45.0% | |
| TGATCAAGAGACAGAGACTC+AGG | - | chr2_1:79416291-79416310 | None:intergenic | 45.0% | |
| TGAGTCTCTGTCTCTTGATC+AGG | + | chr2_1:79416290-79416309 | Msa0228030:CDS | 45.0% | |
| TCTGTCTCTTGATCAGGTCA+AGG | + | chr2_1:79416296-79416315 | Msa0228030:CDS | 45.0% | |
| TCTTGATCAGGTCAAGGCTT+TGG | + | chr2_1:79416302-79416321 | Msa0228030:CDS | 45.0% | |
| ! | TCAGCAAGAGGCATATGATG+AGG | + | chr2_1:79416443-79416462 | Msa0228030:CDS | 45.0% |
| GATGAGGATGATGAAATGCC+TGG | + | chr2_1:79416459-79416478 | Msa0228030:CDS | 45.0% | |
| GTGCTCAGCAGTAATGAGTT+TGG | + | chr2_1:79416502-79416521 | Msa0228030:exon | 45.0% | |
| GAGTTTGGAGATGTCCTTCA+TGG | + | chr2_1:79416517-79416536 | Msa0228030:three_prime_UTR | 45.0% | |
| !! | AGCTTTGTTGGCCAAAACAG+TGG | + | chr2_1:79416549-79416568 | Msa0228030:three_prime_UTR | 45.0% |
| TCAGGATCACCACCCTTATC+AGG | - | chr2_1:79414377-79414396 | None:intergenic | 50.0% | |
| GGTGAAGATGCCCTTAAGGA+AGG | + | chr2_1:79415100-79415119 | Msa0228030:CDS | 50.0% | |
| CACCACCCATTCCTTCCTTA+AGG | - | chr2_1:79415114-79415133 | None:intergenic | 50.0% | |
| CTTAAGGAAGGAATGGGTGG+TGG | + | chr2_1:79415112-79415131 | Msa0228030:CDS | 50.0% | |
| TCATCTTTCTTCGGTGGAGG+TGG | + | chr2_1:79415166-79415185 | Msa0228030:CDS | 50.0% | |
| ! | TGGAGGTGGATTTCCTGGTA+TGG | + | chr2_1:79415180-79415199 | Msa0228030:intron | 50.0% |
| GTGGTAGTAGCAGAGGAAGA+AGG | + | chr2_1:79415301-79415320 | Msa0228030:CDS | 50.0% | |
| TCACCCCTTGAAGGTCTCTT+TGG | + | chr2_1:79415347-79415366 | Msa0228030:CDS | 50.0% | |
| CCTCCAAAGAGACCTTCAAG+GGG | - | chr2_1:79415353-79415372 | None:intergenic | 50.0% | |
| TGTCTTGTGCTCCAAGTGCA+AGG | + | chr2_1:79415416-79415435 | Msa0228030:CDS | 50.0% | |
| GTCTTGTGCTCCAAGTGCAA+GGG | + | chr2_1:79415417-79415436 | Msa0228030:CDS | 50.0% | |
| TCTTGTGCTCCAAGTGCAAG+GGG | + | chr2_1:79415418-79415437 | Msa0228030:CDS | 50.0% | |
| !! | ATGACCTGTGCTGGTTGTCA+AGG | + | chr2_1:79415553-79415572 | Msa0228030:CDS | 50.0% |
| AGAACCTTGACAACCAGCAC+AGG | - | chr2_1:79415560-79415579 | None:intergenic | 50.0% | |
| !! | TGTGCTGGTTGTCAAGGTTC+TGG | + | chr2_1:79415559-79415578 | Msa0228030:CDS | 50.0% |
| GTTGAGAAGGGGATGCAGAA+TGG | + | chr2_1:79415745-79415764 | Msa0228030:CDS | 50.0% | |
| GGTCAGAAGATTACCTTCCC+TGG | + | chr2_1:79415766-79415785 | Msa0228030:CDS | 50.0% | |
| TTCATCAGCTTCACCAGGGA+AGG | - | chr2_1:79415782-79415801 | None:intergenic | 50.0% | |
| !!! | GCTGATGAAGCGGTTGGTTT+TGG | + | chr2_1:79415793-79415812 | Msa0228030:intron | 50.0% |
| ! | TCCCTCACTGAGGCTTTATG+TGG | + | chr2_1:79415990-79416009 | Msa0228030:CDS | 50.0% |
| CAGGCTTGACAACTTCTCCA+GGG | - | chr2_1:79416070-79416089 | None:intergenic | 50.0% | |
| GTACCAGAGGCCTTTCATGA+AGG | + | chr2_1:79416233-79416252 | Msa0228030:CDS | 50.0% | |
| TGGAGACAATTCTCCCAGCA+AGG | + | chr2_1:79416322-79416341 | Msa0228030:CDS | 50.0% | |
| ACTGAGATACAGGCCTTGCT+GGG | - | chr2_1:79416338-79416357 | None:intergenic | 50.0% | |
| AACTGAGATACAGGCCTTGC+TGG | - | chr2_1:79416339-79416358 | None:intergenic | 50.0% | |
| TCAGTTGACAGACATGGAGC+TGG | + | chr2_1:79416353-79416372 | Msa0228030:CDS | 50.0% | |
| GAGGATGATGAAATGCCTGG+TGG | + | chr2_1:79416462-79416481 | Msa0228030:CDS | 50.0% | |
| TGTACTCTTTGAGCACCACC+AGG | - | chr2_1:79416480-79416499 | None:intergenic | 50.0% | |
| ! | GAGTGATCCTGAGAAGCGTG+AGG | + | chr2_1:79415063-79415082 | Msa0228030:CDS | 55.0% |
| GCCCTTAAGGAAGGAATGGG+TGG | + | chr2_1:79415109-79415128 | Msa0228030:CDS | 55.0% | |
| ! | AAGGAAGGAATGGGTGGTGG+CGG | + | chr2_1:79415115-79415134 | Msa0228030:CDS | 55.0% |
| ! | TTCGGTGGAGGTGGATTTCC+TGG | + | chr2_1:79415175-79415194 | Msa0228030:CDS | 55.0% |
| ! | ACAGGTGGTGGTAGTAGCAG+AGG | + | chr2_1:79415294-79415313 | Msa0228030:intron | 55.0% |
| AGAGGAAGAAGGCAGAGACG+TGG | + | chr2_1:79415312-79415331 | Msa0228030:CDS | 55.0% | |
| AAGAAGGCAGAGACGTGGTG+AGG | + | chr2_1:79415317-79415336 | Msa0228030:CDS | 55.0% | |
| GGATGTCGTTCACCCCTTGA+AGG | + | chr2_1:79415338-79415357 | Msa0228030:CDS | 55.0% | |
| CCCCTTGAAGGTCTCTTTGG+AGG | + | chr2_1:79415350-79415369 | Msa0228030:CDS | 55.0% | |
| AGATCGATGCCCACAGTGCA+AGG | + | chr2_1:79415681-79415700 | Msa0228030:CDS | 55.0% | |
| GATCGATGCCCACAGTGCAA+GGG | + | chr2_1:79415682-79415701 | Msa0228030:CDS | 55.0% | |
| CCTTCTCTCCCTTGCACTGT+GGG | - | chr2_1:79415693-79415712 | None:intergenic | 55.0% | |
| ACCTTCTCTCCCTTGCACTG+TGG | - | chr2_1:79415694-79415713 | None:intergenic | 55.0% | |
| CCGCTTCATCAGCTTCACCA+GGG | - | chr2_1:79415786-79415805 | None:intergenic | 55.0% | |
| CCCTGGTGAAGCTGATGAAG+CGG | + | chr2_1:79415783-79415802 | Msa0228030:CDS | 55.0% | |
| ACCGCTTCATCAGCTTCACC+AGG | - | chr2_1:79415787-79415806 | None:intergenic | 55.0% | |
| GGTGAAGCTGATGAAGCGGT+TGG | + | chr2_1:79415787-79415806 | Msa0228030:intron | 55.0% | |
| TTGCAGCCGGACACAGTTAC+TGG | + | chr2_1:79415885-79415904 | Msa0228030:intron | 55.0% | |
| GCACACATTGTCCCTCACTG+AGG | + | chr2_1:79415980-79415999 | Msa0228030:CDS | 55.0% | |
| CCAGGCTTGACAACTTCTCC+AGG | - | chr2_1:79416071-79416090 | None:intergenic | 55.0% | |
| CCTGGAGAAGTTGTCAAGCC+TGG | + | chr2_1:79416068-79416087 | Msa0228030:CDS | 55.0% | |
| TGCCCTTCATGAAAGGCCTC+TGG | - | chr2_1:79416239-79416258 | None:intergenic | 55.0% | |
| CATGGAGCTGGATGAGTGTG+AGG | + | chr2_1:79416365-79416384 | Msa0228030:CDS | 55.0% | |
| AAGGCAGCAAGCTCAGCAAG+AGG | + | chr2_1:79416431-79416450 | Msa0228030:CDS | 55.0% | |
| GGTGCTTCGATGACCTGTGC+TGG | + | chr2_1:79415544-79415563 | Msa0228030:CDS | 60.0% | |
| CCCACAGTGCAAGGGAGAGA+AGG | + | chr2_1:79415690-79415709 | Msa0228030:CDS | 60.0% | |
| !! | GAAGGAATGGGTGGTGGCGG+TGG | + | chr2_1:79415118-79415137 | Msa0228030:CDS | 65.0% |
| !! | GGAATGGGTGGTGGCGGTGG+TGG | + | chr2_1:79415121-79415140 | Msa0228030:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 79414133 | 79416873 | 79414133 | ID=Msa0228030;Name=Msa0228030 |
| chr2_1 | mRNA | 79414133 | 79416873 | 79414133 | ID=Msa0228030-mRNA-1;Parent=Msa0228030;Name=Msa0228030-mRNA-1;_AED=0.13;_eAED=0.13;_QI=88|0.71|0.87|0.87|0.57|0.62|8|358|435 |
| chr2_1 | exon | 79414133 | 79414164 | 79414133 | ID=Msa0228030-mRNA-1:exon:24158;Parent=Msa0228030-mRNA-1 |
| chr2_1 | exon | 79414196 | 79414400 | 79414196 | ID=Msa0228030-mRNA-1:exon:24159;Parent=Msa0228030-mRNA-1 |
| chr2_1 | exon | 79414525 | 79414579 | 79414525 | ID=Msa0228030-mRNA-1:exon:24160;Parent=Msa0228030-mRNA-1 |
| chr2_1 | exon | 79415031 | 79415196 | 79415031 | ID=Msa0228030-mRNA-1:exon:24161;Parent=Msa0228030-mRNA-1 |
| chr2_1 | exon | 79415298 | 79415439 | 79415298 | ID=Msa0228030-mRNA-1:exon:24162;Parent=Msa0228030-mRNA-1 |
| chr2_1 | exon | 79415528 | 79415804 | 79415528 | ID=Msa0228030-mRNA-1:exon:24163;Parent=Msa0228030-mRNA-1 |
| chr2_1 | exon | 79415891 | 79416089 | 79415891 | ID=Msa0228030-mRNA-1:exon:24164;Parent=Msa0228030-mRNA-1 |
| chr2_1 | exon | 79416196 | 79416873 | 79416196 | ID=Msa0228030-mRNA-1:exon:24165;Parent=Msa0228030-mRNA-1 |
| chr2_1 | five_prime_UTR | 79414133 | 79414164 | 79414133 | ID=Msa0228030-mRNA-1:five_prime_utr;Parent=Msa0228030-mRNA-1 |
| chr2_1 | five_prime_UTR | 79414196 | 79414251 | 79414196 | ID=Msa0228030-mRNA-1:five_prime_utr;Parent=Msa0228030-mRNA-1 |
| chr2_1 | CDS | 79414252 | 79414400 | 79414252 | ID=Msa0228030-mRNA-1:cds;Parent=Msa0228030-mRNA-1 |
| chr2_1 | CDS | 79414525 | 79414579 | 79414525 | ID=Msa0228030-mRNA-1:cds;Parent=Msa0228030-mRNA-1 |
| chr2_1 | CDS | 79415031 | 79415196 | 79415031 | ID=Msa0228030-mRNA-1:cds;Parent=Msa0228030-mRNA-1 |
| chr2_1 | CDS | 79415298 | 79415439 | 79415298 | ID=Msa0228030-mRNA-1:cds;Parent=Msa0228030-mRNA-1 |
| chr2_1 | CDS | 79415528 | 79415804 | 79415528 | ID=Msa0228030-mRNA-1:cds;Parent=Msa0228030-mRNA-1 |
| chr2_1 | CDS | 79415891 | 79416089 | 79415891 | ID=Msa0228030-mRNA-1:cds;Parent=Msa0228030-mRNA-1 |
| chr2_1 | CDS | 79416196 | 79416515 | 79416196 | ID=Msa0228030-mRNA-1:cds;Parent=Msa0228030-mRNA-1 |
| chr2_1 | three_prime_UTR | 79416516 | 79416873 | 79416516 | ID=Msa0228030-mRNA-1:three_prime_utr;Parent=Msa0228030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
