AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1339150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339150 MtrunA17_Chr4g0035551 97.514 362 9 0 1 362 1 362 0.0 746
Msa1339150 MtrunA17_Chr1g0155781 70.380 368 97 6 1 360 1 364 0.0 533
Msa1339150 MtrunA17_Chr4g0036281 67.302 367 80 7 1 363 1 331 4.48e-176 492
Msa1339150 MtrunA17_Chr4g0037291 67.493 363 80 6 3 363 46 372 7.29e-176 493
Msa1339150 MtrunA17_Chr4g0036731 68.132 364 72 7 3 363 5 327 7.90e-176 491
Msa1339150 MtrunA17_Chr1g0199131 53.911 358 156 5 10 360 15 370 2.63e-141 406
Msa1339150 MtrunA17_Chr1g0208261 43.000 300 145 7 50 341 94 375 3.24e-68 223
Msa1339150 MtrunA17_Chr4g0041061 38.592 355 177 13 5 348 12 336 3.63e-66 213
Msa1339150 MtrunA17_Chr4g0024411 40.705 312 147 10 54 348 44 334 8.45e-66 211
Msa1339150 MtrunA17_Chr4g0070441 37.808 365 187 11 8 355 6 347 8.87e-66 212
Msa1339150 MtrunA17_Chr4g0040881 40.635 315 159 11 45 348 39 336 3.00e-65 210
Msa1339150 MtrunA17_Chr0c27g0493921 38.017 363 185 11 8 353 6 345 5.25e-65 210
Msa1339150 MtrunA17_Chr4g0041081 39.375 320 166 11 45 353 39 341 1.90e-64 208
Msa1339150 MtrunA17_Chr3g0134231 36.676 349 186 9 5 341 16 341 5.62e-64 211
Msa1339150 MtrunA17_Chr5g0405751 39.564 321 165 11 45 353 37 340 6.69e-64 207
Msa1339150 MtrunA17_Chr4g0053311 39.216 357 155 14 5 341 7 321 2.68e-63 206
Msa1339150 MtrunA17_Chr3g0144281 38.608 316 166 10 48 353 47 344 1.16e-62 204
Msa1339150 MtrunA17_Chr4g0040851 33.989 356 207 9 5 353 22 356 1.24e-62 204
Msa1339150 MtrunA17_Chr4g0041481 37.421 318 174 8 38 348 32 331 2.10e-62 202
Msa1339150 MtrunA17_Chr4g0041521 37.748 302 165 7 54 348 46 331 4.64e-62 202
Msa1339150 MtrunA17_Chr4g0060251 39.550 311 162 9 54 353 46 341 2.28e-61 200
Msa1339150 MtrunA17_Chr3g0142071 38.344 326 158 12 48 353 50 352 1.18e-59 199
Msa1339150 MtrunA17_Chr3g0116551 37.793 299 157 8 63 348 54 336 6.40e-58 192
Msa1339150 MtrunA17_Chr2g0315491 37.748 302 167 6 54 348 45 332 7.20e-58 191
Msa1339150 MtrunA17_Chr4g0041471 36.156 307 168 9 54 348 43 333 7.56e-58 191
Msa1339150 MtrunA17_Chr4g0058081 38.361 305 156 10 58 348 49 335 2.78e-56 187
Msa1339150 MtrunA17_Chr8g0379151 34.409 372 194 14 4 352 24 368 4.87e-56 187
Msa1339150 MtrunA17_Chr2g0325121 35.312 320 179 8 48 359 39 338 8.24e-55 183
Msa1339150 MtrunA17_Chr1g0153011 36.628 344 165 11 9 341 21 322 1.51e-54 186
Msa1339150 MtrunA17_Chr2g0283901 36.137 321 171 11 48 353 51 352 1.72e-54 186
Msa1339150 MtrunA17_Chr2g0283741 32.527 372 195 14 8 350 8 352 1.84e-54 183
Msa1339150 MtrunA17_Chr2g0319991 36.637 333 178 14 41 358 30 344 9.33e-53 178
Msa1339150 MtrunA17_Chr2g0283671 42.534 221 109 5 122 341 5 208 1.70e-51 171
Msa1339150 MtrunA17_Chr7g0248391 32.915 319 177 9 42 348 36 329 2.96e-47 163
Msa1339150 MtrunA17_Chr2g0311471 32.353 374 196 16 4 353 2 342 2.17e-45 159
Msa1339150 MtrunA17_Chr2g0311381 32.308 390 195 17 1 359 1 352 2.23e-43 153
Msa1339150 MtrunA17_Chr7g0248811 31.366 322 189 8 37 348 28 327 3.35e-43 152
Msa1339150 MtrunA17_Chr1g0156161 40.541 222 112 7 129 347 47 251 4.59e-40 142
Msa1339150 MtrunA17_Chr2g0311391 29.829 409 199 17 4 362 2 372 5.71e-40 145
Msa1339150 MtrunA17_Chr8g0379671 47.794 136 55 4 172 306 23 143 3.82e-37 132
Msa1339150 MtrunA17_Chr2g0283751 29.893 281 173 8 6 276 12 278 3.82e-34 127
Msa1339150 MtrunA17_Chr7g0271031 29.861 288 155 14 95 353 110 379 1.67e-23 100
Msa1339150 MtrunA17_Chr7g0271041 28.671 286 161 12 95 353 66 335 1.86e-22 97.1
Msa1339150 MtrunA17_Chr1g0156771 46.154 117 50 5 126 239 50 156 1.03e-21 90.5
Msa1339150 MtrunA17_Chr2g0311091 32.292 192 102 7 7 181 4 184 2.18e-20 87.8
Msa1339150 MtrunA17_Chr2g0283661 34.337 166 95 5 29 184 18 179 1.87e-19 87.0
Msa1339150 MtrunA17_Chr2g0283661 34.746 118 69 3 244 360 161 271 2.31e-13 69.7
Msa1339150 MtrunA17_Chr7g0248421 32.903 155 90 3 155 307 57 199 4.71e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339150 AT2G21430.1 73.611 360 92 3 1 358 1 359 0.0 559
Msa1339150 AT4G39090.1 72.829 357 95 2 8 362 10 366 0.0 552
Msa1339150 AT4G16190.1 67.647 374 109 5 1 363 1 373 0.0 511
Msa1339150 AT3G54940.2 58.726 361 132 7 6 356 9 362 5.84e-154 438
Msa1339150 AT3G54940.3 53.818 275 111 6 6 271 9 276 1.04e-99 296
Msa1339150 AT5G60360.1 39.339 333 174 9 31 353 39 353 1.96e-67 217
Msa1339150 AT3G45310.1 38.483 356 184 11 10 348 11 348 5.26e-67 216
Msa1339150 AT3G19400.1 40.968 310 153 9 57 353 53 345 5.69e-67 216
Msa1339150 AT5G60360.3 39.755 327 169 9 31 347 39 347 2.18e-66 214
Msa1339150 AT5G60360.2 39.571 326 169 9 31 346 39 346 5.19e-66 213
Msa1339150 AT1G47128.1 41.216 296 154 5 50 341 54 333 1.37e-65 215
Msa1339150 AT3G45310.2 38.136 354 184 11 10 346 11 346 1.52e-65 212
Msa1339150 AT3G19390.1 38.504 361 181 12 8 353 8 342 2.27e-65 214
Msa1339150 AT1G09850.1 39.815 324 164 11 48 359 32 336 3.76e-65 213
Msa1339150 AT1G20850.1 38.801 317 166 8 48 353 51 350 5.23e-64 207
Msa1339150 AT5G43060.1 42.199 282 142 7 64 341 70 334 4.46e-63 208
Msa1339150 AT5G45890.1 34.711 363 194 10 1 348 3 337 2.38e-62 203
Msa1339150 AT1G06260.1 38.462 325 159 13 45 353 40 339 2.77e-62 203
Msa1339150 AT3G43960.1 41.297 293 151 7 56 341 49 327 3.44e-62 204
Msa1339150 AT1G29090.1 37.466 363 177 14 6 348 14 346 3.93e-62 203
Msa1339150 AT4G35350.1 37.025 316 172 8 48 353 51 349 9.41e-61 199
Msa1339150 AT4G36880.1 39.792 289 147 6 64 341 69 341 1.09e-60 200
Msa1339150 AT3G48340.1 37.356 348 176 11 9 341 4 324 1.29e-59 196
Msa1339150 AT4G23520.1 34.615 364 193 14 9 353 9 346 6.09e-59 194
Msa1339150 AT2G27420.1 36.593 317 161 11 54 348 41 339 2.53e-57 190
Msa1339150 AT5G50260.1 38.816 304 157 9 58 348 47 334 1.73e-55 186
Msa1339150 AT1G29080.1 37.580 314 166 9 54 353 45 342 2.90e-55 185
Msa1339150 AT3G48350.1 35.429 350 185 11 7 342 3 325 5.29e-55 184
Msa1339150 AT2G34080.1 36.334 311 163 11 54 348 45 336 2.95e-53 179
Msa1339150 AT3G49340.1 34.505 313 172 11 54 351 41 335 2.16e-52 177
Msa1339150 AT4G11310.1 32.312 359 204 10 6 348 9 344 9.48e-52 176
Msa1339150 AT4G11320.2 34.921 315 172 8 48 348 56 351 1.16e-50 173
Msa1339150 AT4G11320.1 34.921 315 172 8 48 348 56 351 1.16e-50 173
Msa1339150 AT3G19400.2 40.889 225 121 4 57 276 53 270 1.54e-50 171
Msa1339150 AT4G35350.2 36.052 233 136 4 48 276 51 274 4.60e-45 156
Msa1339150 AT1G29110.1 32.476 311 165 9 54 348 44 325 1.68e-42 151
Msa1339150 AT3G48350.2 33.443 305 153 10 7 287 3 281 3.04e-39 141
Msa1339150 AT4G01610.1 29.245 318 170 14 61 349 40 331 4.44e-23 99.4
Msa1339150 AT1G02305.1 30.208 288 152 15 95 352 69 337 4.88e-23 99.0
Msa1339150 AT4G01610.2 28.931 318 171 14 61 349 40 331 8.03e-22 95.5
Msa1339150 AT1G02300.1 27.597 308 154 17 95 352 66 354 2.68e-18 85.9

Find 101 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATATATACTGCATTTA+AGG 0.130654 tig0003042:-8333 None:intergenic
TCGACCACCTGACGGATTAT+TGG 0.223904 tig0003042:-6951 None:intergenic
AACCTATTTAAACATAAGTT+TGG 0.234066 tig0003042:+7011 Msa1339150:CDS
TCCCAAACTTATGTTTAAAT+AGG 0.268902 tig0003042:-7013 None:intergenic
GAAGAAGATTATCCTTATTC+TGG 0.284846 tig0003042:+8078 Msa1339150:CDS
CCAAGGATGAACATGATTAC+AGG 0.304516 tig0003042:+7048 Msa1339150:CDS
CTGGAGCCTATTCGCCTATT+AGG 0.320950 tig0003042:+8435 Msa1339150:CDS
GGAGTTTCGTCAGAGCGTTT+TGG 0.321592 tig0003042:+7172 Msa1339150:CDS
GGGGCTGCATTTGCATCTTT+CGG 0.325671 tig0003042:-7215 None:intergenic
GGTAAGACTTGGGGAGAAAA+TGG 0.331018 tig0003042:+8497 Msa1339150:CDS
TGAATACTGGCAACAATTCA+TGG 0.349199 tig0003042:-8662 None:intergenic
TGATCCATGACTTGAGGATA+TGG 0.362172 tig0003042:-6852 None:intergenic
AGATTATCTGTCGGAAGAAT+CGG 0.365413 tig0003042:-7236 None:intergenic
CCACGATCAGTACCAGAATA+AGG 0.365501 tig0003042:-8090 None:intergenic
ACTAGATCATGGAGTGTTAC+TGG 0.371273 tig0003042:+8400 Msa1339150:CDS
ACCTATTTAAACATAAGTTT+GGG 0.393244 tig0003042:+7012 Msa1339150:CDS
AGTCTCTTTGAGCATATGTA+TGG 0.401014 tig0003042:-8380 None:intergenic
GGCTTCTCCTTCATCCTAAT+AGG 0.407412 tig0003042:-8449 None:intergenic
TCACAAGAACCCGGTTGCTC+TGG 0.408096 tig0003042:-7985 None:intergenic
GGAGTGTTACTGGTGGGATA+TGG 0.410428 tig0003042:+8410 Msa1339150:CDS
CCACATTAAAATATGAATAC+TGG 0.419218 tig0003042:-8675 None:intergenic
GGATGAAGGAGAAGCCATAT+TGG 0.423435 tig0003042:+8456 Msa1339150:CDS
TGCTAAGAAGCATCAATTGA+TGG 0.425569 tig0003042:+7100 Msa1339150:CDS
GATTATCTGTCGGAAGAATC+GGG 0.426123 tig0003042:-7235 None:intergenic
CTTCATCCTAATAGGCGAAT+AGG 0.432818 tig0003042:-8441 None:intergenic
TGACAAGATTAGCGGCAATC+TGG 0.437809 tig0003042:-8185 None:intergenic
CAACCGGGTTCTTGTGATGC+CGG 0.438520 tig0003042:+7991 Msa1339150:CDS
AACAACAATTTATAGATGTA+TGG 0.449877 tig0003042:+8762 Msa1339150:three_prime_UTR
ATAGTGTGATCCAGAGCAAC+CGG 0.450276 tig0003042:+7975 Msa1339150:intron
CGTCAGGTGGTCGACGAAGA+AGG 0.454316 tig0003042:+6960 Msa1339150:CDS
AAAACTCATGGGGTAAGACT+TGG 0.455227 tig0003042:+8486 Msa1339150:CDS
TCTTGTGATGCCGGGTGCAA+TGG 0.456716 tig0003042:+8000 Msa1339150:CDS
CCTGTAATCATGTTCATCCT+TGG 0.456777 tig0003042:-7048 None:intergenic
GCATCAATTGATGGATCCTT+CGG 0.466749 tig0003042:+7109 Msa1339150:CDS
TGTTGGAGTTTCAGTACAAC+CGG 0.469204 tig0003042:+7428 Msa1339150:CDS
ATGGATCCTTCGGCGGTTCA+CGG 0.470073 tig0003042:+7119 Msa1339150:CDS
TCTCTCCAATCAAAATCCTC+CGG 0.470619 tig0003042:-7260 None:intergenic
GGTTGCAATTGCGGTAAGTA+AGG 0.473415 tig0003042:-6778 None:intergenic
ATGGATACTACAAAATATGC+AGG 0.476628 tig0003042:+8516 Msa1339150:CDS
TGGAAAATCGCAGAATAGAA+TGG 0.490821 tig0003042:-6832 None:intergenic
AAACTCATGGGGTAAGACTT+GGG 0.490997 tig0003042:+8487 Msa1339150:CDS
AACCGGGTTCTTGTGATGCC+GGG 0.494687 tig0003042:+7992 Msa1339150:CDS
CTCTCCAATCAAAATCCTCC+GGG 0.498371 tig0003042:-7259 None:intergenic
GACGAAGAAGGAGTGCGGTT+GGG 0.502317 tig0003042:+6972 Msa1339150:CDS
ATTGGATCTTCTCCTTCGTC+CGG 0.505970 tig0003042:-6933 None:intergenic
TTACTGGTGGGATATGGATC+TGG 0.507620 tig0003042:+8416 Msa1339150:CDS
TCAATTGATGCTTCTTAGCA+CGG 0.511562 tig0003042:-7097 None:intergenic
CCTTATTCTGGTACTGATCG+TGG 0.512596 tig0003042:+8090 Msa1339150:CDS
TGGGAAGGTTTATTCTTCCA+AGG 0.519917 tig0003042:+7031 Msa1339150:CDS
AGAAGATCCAATAATCCGTC+AGG 0.520179 tig0003042:+6944 Msa1339150:CDS
CGACGAAGAAGGAGTGCGGT+TGG 0.523063 tig0003042:+6971 Msa1339150:CDS
GGTGCTCACTTTCTCTCGAC+CGG 0.523916 tig0003042:+7461 Msa1339150:CDS
CTTCTTCGTCGACCACCTGA+CGG 0.530090 tig0003042:-6959 None:intergenic
TTCTTCGCGCATCACCCCAC+CGG 0.538068 tig0003042:-8061 None:intergenic
ATATATAGAGGTTGCAATTG+CGG 0.543125 tig0003042:-6787 None:intergenic
CTTTAGCACTTACTAGCAAG+AGG 0.547021 tig0003042:-8216 None:intergenic
ACCGTTCTTGACAAGATTAG+CGG 0.547122 tig0003042:-8193 None:intergenic
AGTACAACCGGTGCACTTGA+AGG 0.552820 tig0003042:+7440 Msa1339150:CDS
AAACTCCCTCGGAGTAAGAT+CGG 0.553683 tig0003042:-7156 None:intergenic
CATCAGACCACCATTGCACC+CGG 0.562811 tig0003042:-8010 None:intergenic
CTATTCGCCTATTAGGATGA+AGG 0.564118 tig0003042:+8442 Msa1339150:CDS
TGCTCAAAGAGACTAGATCA+TGG 0.566764 tig0003042:+8389 Msa1339150:CDS
GTCTCTTTGAGCATATGTAT+GGG 0.587803 tig0003042:-8379 None:intergenic
ATTTAAACATAAGTTTGGGA+AGG 0.587990 tig0003042:+7016 Msa1339150:CDS
AACTCATGGGGTAAGACTTG+GGG 0.587990 tig0003042:+8488 Msa1339150:CDS
GCCGCTAATCTTGTCAAGAA+CGG 0.589186 tig0003042:+8192 Msa1339150:CDS
GTGAGCACCTTCAAGTGCAC+CGG 0.592969 tig0003042:-7447 None:intergenic
ACTTGTCGATTGTGATCATG+AGG 0.595475 tig0003042:+7511 Msa1339150:CDS
TGGATACTACAAAATATGCA+GGG 0.599253 tig0003042:+8517 Msa1339150:CDS
GTATATATGCAAACATACAT+TGG 0.601664 tig0003042:+8344 Msa1339150:CDS
TGTGATGCCGGGTGCAATGG+TGG 0.601772 tig0003042:+8003 Msa1339150:CDS
GTGCGATGATCCATGACTTG+AGG 0.601874 tig0003042:-6858 None:intergenic
TATATGCGGAGTGGACTCCA+TGG 0.603926 tig0003042:+8547 Msa1339150:CDS
ACGCTCTGACGAAACTCCCT+CGG 0.605558 tig0003042:-7167 None:intergenic
ATTCTCCGATCTTACTCCGA+GGG 0.607597 tig0003042:+7151 Msa1339150:CDS
CACCCGGCATCACAAGAACC+CGG 0.609271 tig0003042:-7994 None:intergenic
TATATGCAAACATACATTGG+AGG 0.612222 tig0003042:+8347 Msa1339150:CDS
CGGCGTAGAGAATGCCGAGA+CGG 0.623788 tig0003042:-6913 None:intergenic
CTACTGAGTAGTAGTATGAA+CGG 0.624053 tig0003042:-8585 None:intergenic
GGACTCCATGGTTTCTACTG+TGG 0.626354 tig0003042:+8559 Msa1339150:CDS
TCGCAGAATAGAATGGAAAG+TGG 0.626877 tig0003042:-6825 None:intergenic
TCAATTGATGGATCCTTCGG+CGG 0.633662 tig0003042:+7112 Msa1339150:CDS
GATCATGGAGTGTTACTGGT+GGG 0.636411 tig0003042:+8404 Msa1339150:CDS
TCTTCCGACAGATAATCTCC+CGG 0.638365 tig0003042:+7241 Msa1339150:CDS
GTAACACCGTGAACCGCCGA+AGG 0.638844 tig0003042:-7125 None:intergenic
TAGTGTGATCCAGAGCAACC+GGG 0.639888 tig0003042:+7976 Msa1339150:intron
AGGGCTCGTGTGGATCATGT+TGG 0.640660 tig0003042:+7411 Msa1339150:intron
GCATTCTCTACGCCGGACGA+AGG 0.643570 tig0003042:+6921 Msa1339150:CDS
ATCATGAATTAGGGCTCGTG+TGG 0.646039 tig0003042:+7401 Msa1339150:intron
GGCAGCCACAGTAGAAACCA+TGG 0.655273 tig0003042:-8564 None:intergenic
CGTCTCGGCATTCTCTACGC+CGG 0.661935 tig0003042:+6914 Msa1339150:CDS
AGATCATGGAGTGTTACTGG+TGG 0.667806 tig0003042:+8403 Msa1339150:CDS
ATTATCTGTCGGAAGAATCG+GGG 0.668335 tig0003042:-7234 None:intergenic
GGATACTACAAAATATGCAG+GGG 0.670950 tig0003042:+8518 Msa1339150:CDS
TCCTCCGGGAGATTATCTGT+CGG 0.674947 tig0003042:-7245 None:intergenic
AGATCCAATAATCCGTCAGG+TGG 0.675027 tig0003042:+6947 Msa1339150:CDS
TGCAGGGGACGAAATATATG+CGG 0.679393 tig0003042:+8533 Msa1339150:CDS
GGGACGAAATATATGCGGAG+TGG 0.687467 tig0003042:+8538 Msa1339150:CDS
AATTCTCCGATCTTACTCCG+AGG 0.702571 tig0003042:+7150 Msa1339150:CDS
TGGTCGACGAAGAAGGAGTG+CGG 0.715673 tig0003042:+6967 Msa1339150:CDS
TCCGACAGATAATCTCCCGG+AGG 0.723275 tig0003042:+7244 Msa1339150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATGTTATCTAAAT+TGG + tig0003042:7928-7947 Msa1339150:intron 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG + tig0003042:8814-8833 Msa1339150:three_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG + tig0003042:8815-8834 Msa1339150:three_prime_UTR 10.0%
!! TTATTATATGTTATCTAAAT+TGG + tig0003042:7928-7947 Msa1339150:intron 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG + tig0003042:8814-8833 Msa1339150:three_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG + tig0003042:8815-8834 Msa1339150:three_prime_UTR 10.0%
!!! GAGTTTTATTTTATATATAG+AGG - tig0003042:6802-6821 None:intergenic 15.0%
!! GATATACTATTAATTACAAA+GGG - tig0003042:7559-7578 None:intergenic 15.0%
!! AGATATACTATTAATTACAA+AGG - tig0003042:7560-7579 None:intergenic 15.0%
!! ATCTTTACAGAATTATTTAT+TGG + tig0003042:7862-7881 Msa1339150:intron 15.0%
!! TCTTTACAGAATTATTTATT+GGG + tig0003042:7863-7882 Msa1339150:intron 15.0%
!!! GAGTTTTATTTTATATATAG+AGG - tig0003042:6802-6821 None:intergenic 15.0%
!! GATATACTATTAATTACAAA+GGG - tig0003042:7559-7578 None:intergenic 15.0%
!! AGATATACTATTAATTACAA+AGG - tig0003042:7560-7579 None:intergenic 15.0%
!! ATCTTTACAGAATTATTTAT+TGG + tig0003042:7862-7881 Msa1339150:intron 15.0%
!! TCTTTACAGAATTATTTATT+GGG + tig0003042:7863-7882 Msa1339150:intron 15.0%
!! AACCTATTTAAACATAAGTT+TGG + tig0003042:7011-7030 Msa1339150:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG + tig0003042:7012-7031 Msa1339150:CDS 20.0%
!! ATTAATTACAAAGGGAAAAT+AGG - tig0003042:7551-7570 None:intergenic 20.0%
!! AATTAATAGTATATCTGCTA+AGG + tig0003042:7564-7583 Msa1339150:intron 20.0%
!! TATCTGATATTAATCTTTCT+AGG + tig0003042:7641-7660 Msa1339150:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG - tig0003042:7697-7716 None:intergenic 20.0%
!!! AAATGCTAACTTGTAATATT+TGG + tig0003042:7886-7905 Msa1339150:intron 20.0%
!!! AATGCTAACTTGTAATATTT+GGG + tig0003042:7887-7906 Msa1339150:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG + tig0003042:7933-7952 Msa1339150:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG + tig0003042:8042-8061 Msa1339150:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG - tig0003042:8473-8492 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG + tig0003042:8474-8493 Msa1339150:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG + tig0003042:8475-8494 Msa1339150:CDS 20.0%
!!! CTGTTGTTTATTTTATATTG+TGG + tig0003042:8635-8654 Msa1339150:three_prime_UTR 20.0%
!! AACAACAATTTATAGATGTA+TGG + tig0003042:8762-8781 Msa1339150:three_prime_UTR 20.0%
!! AACCTATTTAAACATAAGTT+TGG + tig0003042:7011-7030 Msa1339150:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG + tig0003042:7012-7031 Msa1339150:CDS 20.0%
!! ATTAATTACAAAGGGAAAAT+AGG - tig0003042:7551-7570 None:intergenic 20.0%
!! AATTAATAGTATATCTGCTA+AGG + tig0003042:7564-7583 Msa1339150:intron 20.0%
!! TATCTGATATTAATCTTTCT+AGG + tig0003042:7641-7660 Msa1339150:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG - tig0003042:7697-7716 None:intergenic 20.0%
!!! AAATGCTAACTTGTAATATT+TGG + tig0003042:7886-7905 Msa1339150:intron 20.0%
!!! AATGCTAACTTGTAATATTT+GGG + tig0003042:7887-7906 Msa1339150:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG + tig0003042:7933-7952 Msa1339150:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG + tig0003042:8042-8061 Msa1339150:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG - tig0003042:8473-8492 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG + tig0003042:8474-8493 Msa1339150:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG + tig0003042:8475-8494 Msa1339150:CDS 20.0%
!!! CTGTTGTTTATTTTATATTG+TGG + tig0003042:8635-8654 Msa1339150:three_prime_UTR 20.0%
!! AACAACAATTTATAGATGTA+TGG + tig0003042:8762-8781 Msa1339150:three_prime_UTR 20.0%
! TCCCAAACTTATGTTTAAAT+AGG - tig0003042:7016-7035 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG + tig0003042:7016-7035 Msa1339150:CDS 25.0%
!! TGTTTTGTGATCATGAATTA+GGG + tig0003042:7392-7411 Msa1339150:intron 25.0%
! ACTCTATTAGATATTGTATG+AGG + tig0003042:7698-7717 Msa1339150:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG + tig0003042:7794-7813 Msa1339150:intron 25.0%
!! ATGCTAACTTGTAATATTTG+GGG + tig0003042:7888-7907 Msa1339150:intron 25.0%
!!! TTATCTAAATTGGTTTGGAT+TGG + tig0003042:7938-7957 Msa1339150:intron 25.0%
! TTGCATATATACTGCATTTA+AGG - tig0003042:8336-8355 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG + tig0003042:8344-8363 Msa1339150:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG + tig0003042:8476-8495 Msa1339150:CDS 25.0%
! CCACATTAAAATATGAATAC+TGG - tig0003042:8678-8697 None:intergenic 25.0%
!!! CCAGTATTCATATTTTAATG+TGG + tig0003042:8675-8694 Msa1339150:three_prime_UTR 25.0%
! ACTAGATTAAGATTGAATTG+AGG - tig0003042:6737-6756 None:intergenic 25.0%
! TCCCAAACTTATGTTTAAAT+AGG - tig0003042:7016-7035 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG + tig0003042:7016-7035 Msa1339150:CDS 25.0%
!! TGTTTTGTGATCATGAATTA+GGG + tig0003042:7392-7411 Msa1339150:intron 25.0%
! ACTCTATTAGATATTGTATG+AGG + tig0003042:7698-7717 Msa1339150:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG + tig0003042:7794-7813 Msa1339150:intron 25.0%
!! ATGCTAACTTGTAATATTTG+GGG + tig0003042:7888-7907 Msa1339150:intron 25.0%
!!! TTATCTAAATTGGTTTGGAT+TGG + tig0003042:7938-7957 Msa1339150:intron 25.0%
! TTGCATATATACTGCATTTA+AGG - tig0003042:8336-8355 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG + tig0003042:8344-8363 Msa1339150:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG + tig0003042:8476-8495 Msa1339150:CDS 25.0%
! CCACATTAAAATATGAATAC+TGG - tig0003042:8678-8697 None:intergenic 25.0%
!!! CCAGTATTCATATTTTAATG+TGG + tig0003042:8675-8694 Msa1339150:three_prime_UTR 25.0%
ATATATAGAGGTTGCAATTG+CGG - tig0003042:6790-6809 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG + tig0003042:7292-7311 Msa1339150:CDS 30.0%
! GTGTTTTGTGATCATGAATT+AGG + tig0003042:7391-7410 Msa1339150:intron 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG + tig0003042:8046-8065 Msa1339150:CDS 30.0%
GAAGAAGATTATCCTTATTC+TGG + tig0003042:8078-8097 Msa1339150:CDS 30.0%
TATATGCAAACATACATTGG+AGG + tig0003042:8347-8366 Msa1339150:CDS 30.0%
ATGGATACTACAAAATATGC+AGG + tig0003042:8516-8535 Msa1339150:CDS 30.0%
TGGATACTACAAAATATGCA+GGG + tig0003042:8517-8536 Msa1339150:CDS 30.0%
!!! TTCATATTTTAATGTGGTGC+TGG + tig0003042:8681-8700 Msa1339150:three_prime_UTR 30.0%
ATATATAGAGGTTGCAATTG+CGG - tig0003042:6790-6809 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG + tig0003042:7292-7311 Msa1339150:CDS 30.0%
! GTGTTTTGTGATCATGAATT+AGG + tig0003042:7391-7410 Msa1339150:intron 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG + tig0003042:8046-8065 Msa1339150:CDS 30.0%
GAAGAAGATTATCCTTATTC+TGG + tig0003042:8078-8097 Msa1339150:CDS 30.0%
TATATGCAAACATACATTGG+AGG + tig0003042:8347-8366 Msa1339150:CDS 30.0%
ATGGATACTACAAAATATGC+AGG + tig0003042:8516-8535 Msa1339150:CDS 30.0%
TGGATACTACAAAATATGCA+GGG + tig0003042:8517-8536 Msa1339150:CDS 30.0%
!!! TTCATATTTTAATGTGGTGC+TGG + tig0003042:8681-8700 Msa1339150:three_prime_UTR 30.0%
TGGAAAATCGCAGAATAGAA+TGG - tig0003042:6835-6854 None:intergenic 35.0%
! TTTTCCATATCCTCAAGTCA+TGG + tig0003042:6848-6867 Msa1339150:exon 35.0%
TCAATTGATGCTTCTTAGCA+CGG - tig0003042:7100-7119 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG + tig0003042:7100-7119 Msa1339150:CDS 35.0%
AGATTATCTGTCGGAAGAAT+CGG - tig0003042:7239-7258 None:intergenic 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG + tig0003042:7266-7285 Msa1339150:CDS 35.0%
ATTGTATGAGGTTCGACTTA+AGG + tig0003042:7710-7729 Msa1339150:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG + tig0003042:8045-8064 Msa1339150:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG + tig0003042:8047-8066 Msa1339150:CDS 35.0%
GTCTCTTTGAGCATATGTAT+GGG - tig0003042:8382-8401 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG - tig0003042:8383-8402 None:intergenic 35.0%
GGATACTACAAAATATGCAG+GGG + tig0003042:8518-8537 Msa1339150:CDS 35.0%
CTACTGAGTAGTAGTATGAA+CGG - tig0003042:8588-8607 None:intergenic 35.0%
TGAATACTGGCAACAATTCA+TGG - tig0003042:8665-8684 None:intergenic 35.0%
TGGAAAATCGCAGAATAGAA+TGG - tig0003042:6835-6854 None:intergenic 35.0%
! TTTTCCATATCCTCAAGTCA+TGG + tig0003042:6848-6867 Msa1339150:exon 35.0%
TCAATTGATGCTTCTTAGCA+CGG - tig0003042:7100-7119 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG + tig0003042:7100-7119 Msa1339150:CDS 35.0%
AGATTATCTGTCGGAAGAAT+CGG - tig0003042:7239-7258 None:intergenic 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG + tig0003042:7266-7285 Msa1339150:CDS 35.0%
ATTGTATGAGGTTCGACTTA+AGG + tig0003042:7710-7729 Msa1339150:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG + tig0003042:8045-8064 Msa1339150:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG + tig0003042:8047-8066 Msa1339150:CDS 35.0%
GTCTCTTTGAGCATATGTAT+GGG - tig0003042:8382-8401 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG - tig0003042:8383-8402 None:intergenic 35.0%
GGATACTACAAAATATGCAG+GGG + tig0003042:8518-8537 Msa1339150:CDS 35.0%
CTACTGAGTAGTAGTATGAA+CGG - tig0003042:8588-8607 None:intergenic 35.0%
TGAATACTGGCAACAATTCA+TGG - tig0003042:8665-8684 None:intergenic 35.0%
TCGCAGAATAGAATGGAAAG+TGG - tig0003042:6828-6847 None:intergenic 40.0%
TGATCCATGACTTGAGGATA+TGG - tig0003042:6855-6874 None:intergenic 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG + tig0003042:6899-6918 Msa1339150:CDS 40.0%
AGAAGATCCAATAATCCGTC+AGG + tig0003042:6944-6963 Msa1339150:CDS 40.0%
TGGGAAGGTTTATTCTTCCA+AGG + tig0003042:7031-7050 Msa1339150:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG - tig0003042:7051-7070 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG + tig0003042:7048-7067 Msa1339150:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG + tig0003042:7109-7128 Msa1339150:CDS 40.0%
ATTATCTGTCGGAAGAATCG+GGG - tig0003042:7237-7256 None:intergenic 40.0%
GATTATCTGTCGGAAGAATC+GGG - tig0003042:7238-7257 None:intergenic 40.0%
TCTCTCCAATCAAAATCCTC+CGG - tig0003042:7263-7282 None:intergenic 40.0%
TGTTGGAGTTTCAGTACAAC+CGG + tig0003042:7428-7447 Msa1339150:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG - tig0003042:7483-7502 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG + tig0003042:7511-7530 Msa1339150:CDS 40.0%
!! GCACATTGATAGTGACTTGT+AGG + tig0003042:7746-7765 Msa1339150:intron 40.0%
ACCGTTCTTGACAAGATTAG+CGG - tig0003042:8196-8215 None:intergenic 40.0%
CTTTAGCACTTACTAGCAAG+AGG - tig0003042:8219-8238 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG + tig0003042:8389-8408 Msa1339150:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG + tig0003042:8400-8419 Msa1339150:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG - tig0003042:8444-8463 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG + tig0003042:8442-8461 Msa1339150:CDS 40.0%
AAAACTCATGGGGTAAGACT+TGG + tig0003042:8486-8505 Msa1339150:CDS 40.0%
AAACTCATGGGGTAAGACTT+GGG + tig0003042:8487-8506 Msa1339150:CDS 40.0%
TCGCAGAATAGAATGGAAAG+TGG - tig0003042:6828-6847 None:intergenic 40.0%
TGATCCATGACTTGAGGATA+TGG - tig0003042:6855-6874 None:intergenic 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG + tig0003042:6899-6918 Msa1339150:CDS 40.0%
AGAAGATCCAATAATCCGTC+AGG + tig0003042:6944-6963 Msa1339150:CDS 40.0%
TGGGAAGGTTTATTCTTCCA+AGG + tig0003042:7031-7050 Msa1339150:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG - tig0003042:7051-7070 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG + tig0003042:7048-7067 Msa1339150:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG + tig0003042:7109-7128 Msa1339150:CDS 40.0%
ATTATCTGTCGGAAGAATCG+GGG - tig0003042:7237-7256 None:intergenic 40.0%
GATTATCTGTCGGAAGAATC+GGG - tig0003042:7238-7257 None:intergenic 40.0%
TCTCTCCAATCAAAATCCTC+CGG - tig0003042:7263-7282 None:intergenic 40.0%
TGTTGGAGTTTCAGTACAAC+CGG + tig0003042:7428-7447 Msa1339150:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG - tig0003042:7483-7502 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG + tig0003042:7511-7530 Msa1339150:CDS 40.0%
!! GCACATTGATAGTGACTTGT+AGG + tig0003042:7746-7765 Msa1339150:intron 40.0%
ACCGTTCTTGACAAGATTAG+CGG - tig0003042:8196-8215 None:intergenic 40.0%
CTTTAGCACTTACTAGCAAG+AGG - tig0003042:8219-8238 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG + tig0003042:8389-8408 Msa1339150:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG + tig0003042:8400-8419 Msa1339150:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG - tig0003042:8444-8463 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG + tig0003042:8442-8461 Msa1339150:CDS 40.0%
AAAACTCATGGGGTAAGACT+TGG + tig0003042:8486-8505 Msa1339150:CDS 40.0%
AAACTCATGGGGTAAGACTT+GGG + tig0003042:8487-8506 Msa1339150:CDS 40.0%
GGTTGCAATTGCGGTAAGTA+AGG - tig0003042:6781-6800 None:intergenic 45.0%
ATTGGATCTTCTCCTTCGTC+CGG - tig0003042:6936-6955 None:intergenic 45.0%
AGATCCAATAATCCGTCAGG+TGG + tig0003042:6947-6966 Msa1339150:CDS 45.0%
! TCAATTGATGGATCCTTCGG+CGG + tig0003042:7112-7131 Msa1339150:CDS 45.0%
AATTCTCCGATCTTACTCCG+AGG + tig0003042:7150-7169 Msa1339150:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG + tig0003042:7151-7170 Msa1339150:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG - tig0003042:7159-7178 None:intergenic 45.0%
!! GAGTTTCGTCAGAGCGTTTT+GGG + tig0003042:7173-7192 Msa1339150:CDS 45.0%
!!! AGAGCGTTTTGGGATTGAGA+GGG + tig0003042:7183-7202 Msa1339150:CDS 45.0%
TCTTCCGACAGATAATCTCC+CGG + tig0003042:7241-7260 Msa1339150:CDS 45.0%
!! ATCTCCCGGAGGATTTTGAT+TGG + tig0003042:7255-7274 Msa1339150:CDS 45.0%
CTCTCCAATCAAAATCCTCC+GGG - tig0003042:7262-7281 None:intergenic 45.0%
ATCATGAATTAGGGCTCGTG+TGG + tig0003042:7401-7420 Msa1339150:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG + tig0003042:7975-7994 Msa1339150:intron 45.0%
CCACGATCAGTACCAGAATA+AGG - tig0003042:8093-8112 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG + tig0003042:8090-8109 Msa1339150:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG - tig0003042:8188-8207 None:intergenic 45.0%
GCCGCTAATCTTGTCAAGAA+CGG + tig0003042:8192-8211 Msa1339150:CDS 45.0%
! AGATCATGGAGTGTTACTGG+TGG + tig0003042:8403-8422 Msa1339150:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG + tig0003042:8404-8423 Msa1339150:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG + tig0003042:8416-8435 Msa1339150:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG - tig0003042:8452-8471 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG + tig0003042:8456-8475 Msa1339150:CDS 45.0%
AACTCATGGGGTAAGACTTG+GGG + tig0003042:8488-8507 Msa1339150:CDS 45.0%
GGTAAGACTTGGGGAGAAAA+TGG + tig0003042:8497-8516 Msa1339150:CDS 45.0%
TGCAGGGGACGAAATATATG+CGG + tig0003042:8533-8552 Msa1339150:CDS 45.0%
GGTTGCAATTGCGGTAAGTA+AGG - tig0003042:6781-6800 None:intergenic 45.0%
ATTGGATCTTCTCCTTCGTC+CGG - tig0003042:6936-6955 None:intergenic 45.0%
AGATCCAATAATCCGTCAGG+TGG + tig0003042:6947-6966 Msa1339150:CDS 45.0%
! TCAATTGATGGATCCTTCGG+CGG + tig0003042:7112-7131 Msa1339150:CDS 45.0%
AATTCTCCGATCTTACTCCG+AGG + tig0003042:7150-7169 Msa1339150:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG + tig0003042:7151-7170 Msa1339150:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG - tig0003042:7159-7178 None:intergenic 45.0%
!! GAGTTTCGTCAGAGCGTTTT+GGG + tig0003042:7173-7192 Msa1339150:CDS 45.0%
!!! AGAGCGTTTTGGGATTGAGA+GGG + tig0003042:7183-7202 Msa1339150:CDS 45.0%
TCTTCCGACAGATAATCTCC+CGG + tig0003042:7241-7260 Msa1339150:CDS 45.0%
!! ATCTCCCGGAGGATTTTGAT+TGG + tig0003042:7255-7274 Msa1339150:CDS 45.0%
CTCTCCAATCAAAATCCTCC+GGG - tig0003042:7262-7281 None:intergenic 45.0%
ATCATGAATTAGGGCTCGTG+TGG + tig0003042:7401-7420 Msa1339150:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG + tig0003042:7975-7994 Msa1339150:intron 45.0%
CCACGATCAGTACCAGAATA+AGG - tig0003042:8093-8112 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG + tig0003042:8090-8109 Msa1339150:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG - tig0003042:8188-8207 None:intergenic 45.0%
GCCGCTAATCTTGTCAAGAA+CGG + tig0003042:8192-8211 Msa1339150:CDS 45.0%
! AGATCATGGAGTGTTACTGG+TGG + tig0003042:8403-8422 Msa1339150:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG + tig0003042:8404-8423 Msa1339150:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG + tig0003042:8416-8435 Msa1339150:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG - tig0003042:8452-8471 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG + tig0003042:8456-8475 Msa1339150:CDS 45.0%
AACTCATGGGGTAAGACTTG+GGG + tig0003042:8488-8507 Msa1339150:CDS 45.0%
GGTAAGACTTGGGGAGAAAA+TGG + tig0003042:8497-8516 Msa1339150:CDS 45.0%
TGCAGGGGACGAAATATATG+CGG + tig0003042:8533-8552 Msa1339150:CDS 45.0%
GTGCGATGATCCATGACTTG+AGG - tig0003042:6861-6880 None:intergenic 50.0%
!! TCGACCACCTGACGGATTAT+TGG - tig0003042:6954-6973 None:intergenic 50.0%
!! GGAGTTTCGTCAGAGCGTTT+TGG + tig0003042:7172-7191 Msa1339150:CDS 50.0%
!!! CAGAGCGTTTTGGGATTGAG+AGG + tig0003042:7182-7201 Msa1339150:CDS 50.0%
!!! GAGCGTTTTGGGATTGAGAG+GGG + tig0003042:7184-7203 Msa1339150:CDS 50.0%
!!! GTTTTGGGATTGAGAGGGGT+GGG + tig0003042:7188-7207 Msa1339150:CDS 50.0%
!!! TTTTGGGATTGAGAGGGGTG+GGG + tig0003042:7189-7208 Msa1339150:CDS 50.0%
GGGGCTGCATTTGCATCTTT+CGG - tig0003042:7218-7237 None:intergenic 50.0%
TCCTCCGGGAGATTATCTGT+CGG - tig0003042:7248-7267 None:intergenic 50.0%
AGTACAACCGGTGCACTTGA+AGG + tig0003042:7440-7459 Msa1339150:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG + tig0003042:7976-7995 Msa1339150:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG + tig0003042:8410-8429 Msa1339150:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG + tig0003042:8435-8454 Msa1339150:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG + tig0003042:8538-8557 Msa1339150:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG + tig0003042:8547-8566 Msa1339150:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG + tig0003042:8559-8578 Msa1339150:CDS 50.0%
GTGCGATGATCCATGACTTG+AGG - tig0003042:6861-6880 None:intergenic 50.0%
!! TCGACCACCTGACGGATTAT+TGG - tig0003042:6954-6973 None:intergenic 50.0%
!! GGAGTTTCGTCAGAGCGTTT+TGG + tig0003042:7172-7191 Msa1339150:CDS 50.0%
!!! CAGAGCGTTTTGGGATTGAG+AGG + tig0003042:7182-7201 Msa1339150:CDS 50.0%
!!! GAGCGTTTTGGGATTGAGAG+GGG + tig0003042:7184-7203 Msa1339150:CDS 50.0%
!!! GTTTTGGGATTGAGAGGGGT+GGG + tig0003042:7188-7207 Msa1339150:CDS 50.0%
!!! TTTTGGGATTGAGAGGGGTG+GGG + tig0003042:7189-7208 Msa1339150:CDS 50.0%
GGGGCTGCATTTGCATCTTT+CGG - tig0003042:7218-7237 None:intergenic 50.0%
TCCTCCGGGAGATTATCTGT+CGG - tig0003042:7248-7267 None:intergenic 50.0%
AGTACAACCGGTGCACTTGA+AGG + tig0003042:7440-7459 Msa1339150:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG + tig0003042:7976-7995 Msa1339150:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG + tig0003042:8410-8429 Msa1339150:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG + tig0003042:8435-8454 Msa1339150:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG + tig0003042:8538-8557 Msa1339150:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG + tig0003042:8547-8566 Msa1339150:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG + tig0003042:8559-8578 Msa1339150:CDS 50.0%
CTTCTTCGTCGACCACCTGA+CGG - tig0003042:6962-6981 None:intergenic 55.0%
TGGTCGACGAAGAAGGAGTG+CGG + tig0003042:6967-6986 Msa1339150:CDS 55.0%
! GACGAAGAAGGAGTGCGGTT+GGG + tig0003042:6972-6991 Msa1339150:CDS 55.0%
ATGGATCCTTCGGCGGTTCA+CGG + tig0003042:7119-7138 Msa1339150:CDS 55.0%
ACGCTCTGACGAAACTCCCT+CGG - tig0003042:7170-7189 None:intergenic 55.0%
!!! CGTTTTGGGATTGAGAGGGG+TGG + tig0003042:7187-7206 Msa1339150:CDS 55.0%
TCCGACAGATAATCTCCCGG+AGG + tig0003042:7244-7263 Msa1339150:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG + tig0003042:7411-7430 Msa1339150:intron 55.0%
GTGAGCACCTTCAAGTGCAC+CGG - tig0003042:7450-7469 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG + tig0003042:7461-7480 Msa1339150:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG - tig0003042:7988-8007 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG + tig0003042:7991-8010 Msa1339150:CDS 55.0%
AACCGGGTTCTTGTGATGCC+GGG + tig0003042:7992-8011 Msa1339150:CDS 55.0%
TCTTGTGATGCCGGGTGCAA+TGG + tig0003042:8000-8019 Msa1339150:CDS 55.0%
CATCAGACCACCATTGCACC+CGG - tig0003042:8013-8032 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG - tig0003042:8567-8586 None:intergenic 55.0%
CTTCTTCGTCGACCACCTGA+CGG - tig0003042:6962-6981 None:intergenic 55.0%
TGGTCGACGAAGAAGGAGTG+CGG + tig0003042:6967-6986 Msa1339150:CDS 55.0%
! GACGAAGAAGGAGTGCGGTT+GGG + tig0003042:6972-6991 Msa1339150:CDS 55.0%
ATGGATCCTTCGGCGGTTCA+CGG + tig0003042:7119-7138 Msa1339150:CDS 55.0%
ACGCTCTGACGAAACTCCCT+CGG - tig0003042:7170-7189 None:intergenic 55.0%
!!! CGTTTTGGGATTGAGAGGGG+TGG + tig0003042:7187-7206 Msa1339150:CDS 55.0%
TCCGACAGATAATCTCCCGG+AGG + tig0003042:7244-7263 Msa1339150:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG + tig0003042:7411-7430 Msa1339150:intron 55.0%
GTGAGCACCTTCAAGTGCAC+CGG - tig0003042:7450-7469 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG + tig0003042:7461-7480 Msa1339150:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG - tig0003042:7988-8007 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG + tig0003042:7991-8010 Msa1339150:CDS 55.0%
AACCGGGTTCTTGTGATGCC+GGG + tig0003042:7992-8011 Msa1339150:CDS 55.0%
TCTTGTGATGCCGGGTGCAA+TGG + tig0003042:8000-8019 Msa1339150:CDS 55.0%
CATCAGACCACCATTGCACC+CGG - tig0003042:8013-8032 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG - tig0003042:8567-8586 None:intergenic 55.0%
CGGCGTAGAGAATGCCGAGA+CGG - tig0003042:6916-6935 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG + tig0003042:6914-6933 Msa1339150:CDS 60.0%
GCATTCTCTACGCCGGACGA+AGG + tig0003042:6921-6940 Msa1339150:CDS 60.0%
CGTCAGGTGGTCGACGAAGA+AGG + tig0003042:6960-6979 Msa1339150:CDS 60.0%
! CGACGAAGAAGGAGTGCGGT+TGG + tig0003042:6971-6990 Msa1339150:CDS 60.0%
GTAACACCGTGAACCGCCGA+AGG - tig0003042:7128-7147 None:intergenic 60.0%
CACCCGGCATCACAAGAACC+CGG - tig0003042:7997-8016 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG + tig0003042:8003-8022 Msa1339150:CDS 60.0%
TTCTTCGCGCATCACCCCAC+CGG - tig0003042:8064-8083 None:intergenic 60.0%
CGGCGTAGAGAATGCCGAGA+CGG - tig0003042:6916-6935 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG + tig0003042:6914-6933 Msa1339150:CDS 60.0%
GCATTCTCTACGCCGGACGA+AGG + tig0003042:6921-6940 Msa1339150:CDS 60.0%
CGTCAGGTGGTCGACGAAGA+AGG + tig0003042:6960-6979 Msa1339150:CDS 60.0%
! CGACGAAGAAGGAGTGCGGT+TGG + tig0003042:6971-6990 Msa1339150:CDS 60.0%
GTAACACCGTGAACCGCCGA+AGG - tig0003042:7128-7147 None:intergenic 60.0%
CACCCGGCATCACAAGAACC+CGG - tig0003042:7997-8016 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG + tig0003042:8003-8022 Msa1339150:CDS 60.0%
TTCTTCGCGCATCACCCCAC+CGG - tig0003042:8064-8083 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0003042 gene 6735 8839 6735 ID=Msa1339150;Name=Msa1339150
tig0003042 mRNA 6735 8839 6735 ID=Msa1339150-mRNA-1;Parent=Msa1339150;Name=Msa1339150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=132|1|1|1|1|1|4|232|363
tig0003042 exon 6735 7313 6735 ID=Msa1339150-mRNA-1:exon:1984;Parent=Msa1339150-mRNA-1
tig0003042 exon 7413 7532 7413 ID=Msa1339150-mRNA-1:exon:1985;Parent=Msa1339150-mRNA-1
tig0003042 exon 7979 8225 7979 ID=Msa1339150-mRNA-1:exon:1986;Parent=Msa1339150-mRNA-1
tig0003042 exon 8330 8839 8330 ID=Msa1339150-mRNA-1:exon:1987;Parent=Msa1339150-mRNA-1
tig0003042 five_prime_UTR 6735 6866 6735 ID=Msa1339150-mRNA-1:five_prime_utr;Parent=Msa1339150-mRNA-1
tig0003042 CDS 6867 7313 6867 ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042 CDS 7413 7532 7413 ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042 CDS 7979 8225 7979 ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042 CDS 8330 8607 8330 ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042 three_prime_UTR 8608 8839 8608 ID=Msa1339150-mRNA-1:three_prime_utr;Parent=Msa1339150-mRNA-1
Gene Sequence

>Msa1339150

ATGGATCATCGCACTCTTCTTCTCTTCGTCGTTCTTTTCATCTTCTCCGTCTCGGCATTCTCTACGCCGGACGAAGGAGAAGATCCAATAATCCGTCAGGTGGTCGACGAAGAAGGAGTGCGGTTGGGAGCAGAGCATCACTTTAACCTATTTAAACATAAGTTTGGGAAGGTTTATTCTTCCAAGGATGAACATGATTACAGGTTTAAAATCTTCAAGTCTAATCTGAACCGTGCTAAGAAGCATCAATTGATGGATCCTTCGGCGGTTCACGGTGTTACGAAATTCTCCGATCTTACTCCGAGGGAGTTTCGTCAGAGCGTTTTGGGATTGAGAGGGGTGGGGTTGCCGAAAGATGCAAATGCAGCCCCGATTCTTCCGACAGATAATCTCCCGGAGGATTTTGATTGGAGAGAGAAAGGAGCAGTTACTGCTGTTAAAAATCAGGGCTCGTGTGGATCATGTTGGAGTTTCAGTACAACCGGTGCACTTGAAGGTGCTCACTTTCTCTCGACCGGAAAACTTGTCAGTCTTAGCGAGCAACAACTTGTCGATTGTGATCATGAGTGTGATCCAGAGCAACCGGGTTCTTGTGATGCCGGGTGCAATGGTGGTCTGATGAATAGTGCTTTTGAGTACATTTTAAAATCCGGTGGGGTGATGCGCGAAGAAGATTATCCTTATTCTGGTACTGATCGTGGAGCATGCAAGTTTGACAAGAAAAAAATTGCAGCATCAATTGCAAATTTCAGCGTTGTTTCACTTGATGAAGACCAGATTGCCGCTAATCTTGTCAAGAACGGTCCTCTTGCTATTGCCTTAAATGCAGTATATATGCAAACATACATTGGAGGAGTATCATGCCCATACATATGCTCAAAGAGACTAGATCATGGAGTGTTACTGGTGGGATATGGATCTGGAGCCTATTCGCCTATTAGGATGAAGGAGAAGCCATATTGGATAATTAAAAACTCATGGGGTAAGACTTGGGGAGAAAATGGATACTACAAAATATGCAGGGGACGAAATATATGCGGAGTGGACTCCATGGTTTCTACTGTGGCTGCCGTTCATACTACTACTCAGTAG
Protein sequence

>Msa1339150

MDHRTLLLFVVLFIFSVSAFSTPDEGEDPIIRQVVDEEGVRLGAEHHFNLFKHKFGKVYSSKDEHDYRFKIFKSNLNRAKKHQLMDPSAVHGVTKFSDLTPREFRQSVLGLRGVGLPKDANAAPILPTDNLPEDFDWREKGAVTAVKNQGSCGSCWSFSTTGALEGAHFLSTGKLVSLSEQQLVDCDHECDPEQPGSCDAGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGACKFDKKKIAASIANFSVVSLDEDQIAANLVKNGPLAIALNAVYMQTYIGGVSCPYICSKRLDHGVLLVGYGSGAYSPIRMKEKPYWIIKNSWGKTWGENGYYKICRGRNICGVDSMVSTVAAVHTTTQ*