AlfalfaGEDB | Msa1339150

M. sativa cultivar zhongmu-4 / Msa1339150

KEGG: K01373
GO: GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF08246.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339150	XP_003606998.1	97.514	362	9	0	1	362	1	362	0.0	746

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339150	sp\|P43295\|RD19B_ARATH	73.611	360	92	3	1	358	1	359	0.0	559

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339150	G7JIL2	97.514	362	9	0	1	362	1	362	0.0	746

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa1339150	0.801792	7.617915e-49	-8.615850e-47
Msa0010910	Msa1339150	0.822182	2.716592e-53	-8.615850e-47
Msa0237300	Msa1339150	0.805426	1.342904e-49	-8.615850e-47
Msa0274720	Msa1339150	0.810608	1.059017e-50	-8.615850e-47
Msa0312220	Msa1339150	0.804439	2.159480e-49	-8.615850e-47
Msa0315520	Msa1339150	0.801255	9.813274e-49	-8.615850e-47
Msa0382310	Msa1339150	0.807019	6.201403e-50	-8.615850e-47
Msa0395980	Msa1339150	0.805835	1.101875e-49	-8.615850e-47
Msa0440510	Msa1339150	0.802912	4.479583e-49	-8.615850e-47
Msa0491000	Msa1339150	0.805853	1.092513e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339150	MtrunA17_Chr4g0035551	97.514	362	9	0	1	362	1	362	0.0	746
Msa1339150	MtrunA17_Chr1g0155781	70.380	368	97	6	1	360	1	364	0.0	533
Msa1339150	MtrunA17_Chr4g0036281	67.302	367	80	7	1	363	1	331	4.48e-176	492
Msa1339150	MtrunA17_Chr4g0037291	67.493	363	80	6	3	363	46	372	7.29e-176	493
Msa1339150	MtrunA17_Chr4g0036731	68.132	364	72	7	3	363	5	327	7.90e-176	491
Msa1339150	MtrunA17_Chr1g0199131	53.911	358	156	5	10	360	15	370	2.63e-141	406
Msa1339150	MtrunA17_Chr1g0208261	43.000	300	145	7	50	341	94	375	3.24e-68	223
Msa1339150	MtrunA17_Chr4g0041061	38.592	355	177	13	5	348	12	336	3.63e-66	213
Msa1339150	MtrunA17_Chr4g0024411	40.705	312	147	10	54	348	44	334	8.45e-66	211
Msa1339150	MtrunA17_Chr4g0070441	37.808	365	187	11	8	355	6	347	8.87e-66	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339150	AT2G21430.1	73.611	360	92	3	1	358	1	359	0.0	559
Msa1339150	AT4G39090.1	72.829	357	95	2	8	362	10	366	0.0	552
Msa1339150	AT4G16190.1	67.647	374	109	5	1	363	1	373	0.0	511
Msa1339150	AT3G54940.2	58.726	361	132	7	6	356	9	362	5.84e-154	438
Msa1339150	AT3G54940.3	53.818	275	111	6	6	271	9	276	1.04e-99	296
Msa1339150	AT5G60360.1	39.339	333	174	9	31	353	39	353	1.96e-67	217
Msa1339150	AT3G45310.1	38.483	356	184	11	10	348	11	348	5.26e-67	216
Msa1339150	AT3G19400.1	40.968	310	153	9	57	353	53	345	5.69e-67	216
Msa1339150	AT5G60360.3	39.755	327	169	9	31	347	39	347	2.18e-66	214
Msa1339150	AT5G60360.2	39.571	326	169	9	31	346	39	346	5.19e-66	213

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Find 101 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATGGGGTAAGACT+TGG	0.455227	tig0003042:+8486	Msa1339150:CDS
AAACTCATGGGGTAAGACTT+GGG	0.490997	tig0003042:+8487	Msa1339150:CDS
AAACTCCCTCGGAGTAAGAT+CGG	0.553683	tig0003042:-7156	None:intergenic
AACAACAATTTATAGATGTA+TGG	0.449877	tig0003042:+8762	Msa1339150:three_prime_UTR
AACCGGGTTCTTGTGATGCC+GGG	0.494687	tig0003042:+7992	Msa1339150:CDS
AACCTATTTAAACATAAGTT+TGG	0.234066	tig0003042:+7011	Msa1339150:CDS
AACTCATGGGGTAAGACTTG+GGG	0.587990	tig0003042:+8488	Msa1339150:CDS
AATTCTCCGATCTTACTCCG+AGG	0.702571	tig0003042:+7150	Msa1339150:CDS
ACCGTTCTTGACAAGATTAG+CGG	0.547122	tig0003042:-8193	None:intergenic
ACCTATTTAAACATAAGTTT+GGG	0.393244	tig0003042:+7012	Msa1339150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATATAGAGGTTGCAATTG+CGG	-	tig0003042:6790-6809	None:intergenic	30.0%
AGTTACTGCTGTTAAAAATC+AGG	+	tig0003042:7292-7311	Msa1339150:CDS	30.0%
GAAGAAGATTATCCTTATTC+TGG	+	tig0003042:8078-8097	Msa1339150:CDS	30.0%
TATATGCAAACATACATTGG+AGG	+	tig0003042:8347-8366	Msa1339150:CDS	30.0%
ATGGATACTACAAAATATGC+AGG	+	tig0003042:8516-8535	Msa1339150:CDS	30.0%
TGGATACTACAAAATATGCA+GGG	+	tig0003042:8517-8536	Msa1339150:CDS	30.0%
ATATATAGAGGTTGCAATTG+CGG	-	tig0003042:6790-6809	None:intergenic	30.0%
AGTTACTGCTGTTAAAAATC+AGG	+	tig0003042:7292-7311	Msa1339150:CDS	30.0%
GAAGAAGATTATCCTTATTC+TGG	+	tig0003042:8078-8097	Msa1339150:CDS	30.0%
TATATGCAAACATACATTGG+AGG	+	tig0003042:8347-8366	Msa1339150:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0003042	gene	6735	8839	6735	ID=Msa1339150;Name=Msa1339150
tig0003042	mRNA	6735	8839	6735	ID=Msa1339150-mRNA-1;Parent=Msa1339150;Name=Msa1339150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=132\|1\|1\|1\|1\|1\|4\|232\|363
tig0003042	exon	6735	7313	6735	ID=Msa1339150-mRNA-1:exon:1984;Parent=Msa1339150-mRNA-1
tig0003042	exon	7413	7532	7413	ID=Msa1339150-mRNA-1:exon:1985;Parent=Msa1339150-mRNA-1
tig0003042	exon	7979	8225	7979	ID=Msa1339150-mRNA-1:exon:1986;Parent=Msa1339150-mRNA-1
tig0003042	exon	8330	8839	8330	ID=Msa1339150-mRNA-1:exon:1987;Parent=Msa1339150-mRNA-1
tig0003042	five_prime_UTR	6735	6866	6735	ID=Msa1339150-mRNA-1:five_prime_utr;Parent=Msa1339150-mRNA-1
tig0003042	CDS	6867	7313	6867	ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042	CDS	7413	7532	7413	ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042	CDS	7979	8225	7979	ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042	CDS	8330	8607	8330	ID=Msa1339150-mRNA-1:cds;Parent=Msa1339150-mRNA-1
tig0003042	three_prime_UTR	8608	8839	8608	ID=Msa1339150-mRNA-1:three_prime_utr;Parent=Msa1339150-mRNA-1

Gene Sequence

>Msa1339150

ATGGATCATCGCACTCTTCTTCTCTTCGTCGTTCTTTTCATCTTCTCCGTCTCGGCATTCTCTACGCCGGACGAAGGAGAAGATCCAATAATCCGTCAGGTGGTCGACGAAGAAGGAGTGCGGTTGGGAGCAGAGCATCACTTTAACCTATTTAAACATAAGTTTGGGAAGGTTTATTCTTCCAAGGATGAACATGATTACAGGTTTAAAATCTTCAAGTCTAATCTGAACCGTGCTAAGAAGCATCAATTGATGGATCCTTCGGCGGTTCACGGTGTTACGAAATTCTCCGATCTTACTCCGAGGGAGTTTCGTCAGAGCGTTTTGGGATTGAGAGGGGTGGGGTTGCCGAAAGATGCAAATGCAGCCCCGATTCTTCCGACAGATAATCTCCCGGAGGATTTTGATTGGAGAGAGAAAGGAGCAGTTACTGCTGTTAAAAATCAGGGCTCGTGTGGATCATGTTGGAGTTTCAGTACAACCGGTGCACTTGAAGGTGCTCACTTTCTCTCGACCGGAAAACTTGTCAGTCTTAGCGAGCAACAACTTGTCGATTGTGATCATGAGTGTGATCCAGAGCAACCGGGTTCTTGTGATGCCGGGTGCAATGGTGGTCTGATGAATAGTGCTTTTGAGTACATTTTAAAATCCGGTGGGGTGATGCGCGAAGAAGATTATCCTTATTCTGGTACTGATCGTGGAGCATGCAAGTTTGACAAGAAAAAAATTGCAGCATCAATTGCAAATTTCAGCGTTGTTTCACTTGATGAAGACCAGATTGCCGCTAATCTTGTCAAGAACGGTCCTCTTGCTATTGCCTTAAATGCAGTATATATGCAAACATACATTGGAGGAGTATCATGCCCATACATATGCTCAAAGAGACTAGATCATGGAGTGTTACTGGTGGGATATGGATCTGGAGCCTATTCGCCTATTAGGATGAAGGAGAAGCCATATTGGATAATTAAAAACTCATGGGGTAAGACTTGGGGAGAAAATGGATACTACAAAATATGCAGGGGACGAAATATATGCGGAGTGGACTCCATGGTTTCTACTGTGGCTGCCGTTCATACTACTACTCAGTAG

Protein sequence

>Msa1339150

MDHRTLLLFVVLFIFSVSAFSTPDEGEDPIIRQVVDEEGVRLGAEHHFNLFKHKFGKVYSSKDEHDYRFKIFKSNLNRAKKHQLMDPSAVHGVTKFSDLTPREFRQSVLGLRGVGLPKDANAAPILPTDNLPEDFDWREKGAVTAVKNQGSCGSCWSFSTTGALEGAHFLSTGKLVSLSEQQLVDCDHECDPEQPGSCDAGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGACKFDKKKIAASIANFSVVSLDEDQIAANLVKNGPLAIALNAVYMQTYIGGVSCPYICSKRLDHGVLLVGYGSGAYSPIRMKEKPYWIIKNSWGKTWGENGYYKICRGRNICGVDSMVSTVAAVHTTTQ*