AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054530 MtrunA17_Chr1g0156121 86.640 247 22 2 1 240 1 243 5.40e-149 434
Msa0054530 MtrunA17_Chr7g0215371 78.947 76 16 0 99 174 1 76 6.54e-36 123
Msa0054530 MtrunA17_Chr4g0060381 53.731 67 31 0 117 183 100 166 6.72e-16 76.6
Msa0054530 MtrunA17_Chr8g0346021 59.649 57 23 0 119 175 129 185 9.18e-15 73.2
Msa0054530 MtrunA17_Chr1g0203711 50.000 66 33 0 115 180 113 178 7.39e-14 70.5
Msa0054530 MtrunA17_Chr1g0166431 32.911 158 84 5 13 168 31 168 2.61e-13 68.9
Msa0054530 MtrunA17_Chr7g0273861 50.769 65 32 0 117 181 125 189 3.65e-13 68.2
Msa0054530 MtrunA17_Chr8g0340761 49.254 67 34 0 119 185 128 194 4.63e-13 67.8
Msa0054530 MtrunA17_Chr3g0126901 59.615 52 21 0 117 168 112 163 5.38e-13 67.8
Msa0054530 MtrunA17_Chr4g0025441 59.615 52 21 0 117 168 96 147 9.08e-13 67.0
Msa0054530 MtrunA17_Chr8g0389781 52.542 59 28 0 119 177 128 186 1.81e-12 66.2
Msa0054530 MtrunA17_Chr6g0472551 42.308 78 39 1 100 177 106 177 2.03e-12 66.2
Msa0054530 MtrunA17_Chr7g0273951 58.333 60 23 1 119 178 108 165 2.49e-12 65.9
Msa0054530 MtrunA17_Chr5g0416161 46.154 65 35 0 119 183 121 185 2.99e-12 65.9
Msa0054530 MtrunA17_Chr1g0204901 48.387 62 32 0 117 178 136 197 3.86e-12 65.5
Msa0054530 MtrunA17_Chr4g0020671 45.946 74 38 1 117 190 101 172 4.29e-12 65.1
Msa0054530 MtrunA17_Chr1g0146931 57.692 52 22 0 117 168 122 173 6.25e-12 64.7
Msa0054530 MtrunA17_Chr3g0135851 57.692 52 22 0 117 168 91 142 4.10e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054530 AT1G19870.2 51.695 118 46 2 106 223 21 127 3.43e-31 121
Msa0054530 AT1G19870.1 51.695 118 46 2 106 223 204 310 4.35e-31 121
Msa0054530 AT1G19870.1 42.857 84 39 2 4 78 6 89 2.83e-11 63.5
Msa0054530 AT1G18840.1 37.063 143 76 5 88 223 85 220 1.19e-17 82.0
Msa0054530 AT1G18840.3 37.063 143 76 5 88 223 85 220 1.19e-17 82.0
Msa0054530 AT1G18840.2 37.063 143 76 5 88 223 85 220 1.19e-17 82.0
Msa0054530 AT4G14750.1 31.818 220 116 6 1 207 1 199 1.10e-15 75.9
Msa0054530 AT1G74690.1 50.746 67 33 0 117 183 113 179 1.20e-15 76.3
Msa0054530 AT4G14750.3 31.818 220 116 6 1 207 60 258 1.57e-15 75.9
Msa0054530 AT4G14750.2 31.818 220 116 6 1 207 60 258 1.68e-15 75.5
Msa0054530 AT3G49260.1 51.471 68 33 0 117 184 120 187 3.29e-15 74.7
Msa0054530 AT3G49260.4 51.471 68 33 0 117 184 120 187 3.29e-15 74.7
Msa0054530 AT3G49260.2 51.471 68 33 0 117 184 120 187 3.29e-15 74.7
Msa0054530 AT3G49260.3 51.471 68 33 0 117 184 120 187 3.45e-15 74.7
Msa0054530 AT1G01110.2 55.072 69 30 1 119 187 123 190 5.84e-15 74.3
Msa0054530 AT1G14380.1 47.761 67 35 0 117 183 94 160 7.57e-15 73.9
Msa0054530 AT1G14380.3 47.761 67 35 0 117 183 94 160 7.57e-15 73.9
Msa0054530 AT1G14380.4 47.761 67 35 0 117 183 94 160 7.57e-15 73.9
Msa0054530 AT1G14380.6 47.761 67 35 0 117 183 94 160 9.09e-15 73.6
Msa0054530 AT1G14380.5 47.761 67 35 0 117 183 94 160 9.09e-15 73.6
Msa0054530 AT1G14380.2 47.761 67 35 0 117 183 94 160 9.09e-15 73.6
Msa0054530 AT1G14380.7 47.761 67 35 0 117 183 94 160 1.03e-14 73.6
Msa0054530 AT4G00820.1 32.484 157 100 4 35 187 47 201 1.96e-14 72.8
Msa0054530 AT4G10640.1 35.119 168 79 5 18 182 25 165 6.76e-14 70.9
Msa0054530 AT2G02790.2 33.071 127 77 1 67 185 49 175 3.60e-13 68.9
Msa0054530 AT2G02790.3 33.071 127 77 1 67 185 49 175 3.60e-13 68.9
Msa0054530 AT2G02790.1 33.071 127 77 1 67 185 49 175 3.75e-13 68.9
Msa0054530 AT1G72670.1 40.741 108 55 2 89 188 57 163 4.10e-13 68.6
Msa0054530 AT5G03040.1 41.429 70 41 0 117 186 115 184 1.62e-12 67.0
Msa0054530 AT5G03040.3 41.429 70 41 0 117 186 115 184 1.62e-12 67.0
Msa0054530 AT5G03040.2 41.429 70 41 0 117 186 115 184 1.62e-12 67.0
Msa0054530 AT3G51380.1 38.947 95 50 2 92 178 4 98 4.26e-12 61.2
Msa0054530 AT5G13460.1 32.099 162 105 3 24 181 15 175 5.98e-12 65.1
Msa0054530 AT2G26180.1 57.692 52 22 0 117 168 84 135 7.75e-12 64.7
Msa0054530 AT5G07240.2 49.153 59 30 0 119 177 154 212 2.74e-11 63.2
Msa0054530 AT5G07240.1 49.153 59 30 0 119 177 108 166 2.85e-11 63.2
Msa0054530 AT3G59690.2 37.333 75 47 0 120 194 172 246 2.89e-11 63.2
Msa0054530 AT3G59690.1 37.333 75 47 0 120 194 172 246 2.89e-11 63.2
Msa0054530 AT3G16490.1 42.683 82 41 1 119 194 109 190 4.13e-11 62.4
Msa0054530 AT3G22190.3 58.000 50 21 0 119 168 90 139 4.42e-11 62.4
Msa0054530 AT3G22190.2 58.000 50 21 0 119 168 90 139 4.42e-11 62.4
Msa0054530 AT3G22190.4 58.000 50 21 0 119 168 90 139 4.42e-11 62.4
Msa0054530 AT3G22190.1 58.000 50 21 0 119 168 90 139 4.42e-11 62.4
Msa0054530 AT1G17480.1 31.387 137 80 3 84 207 49 184 8.38e-11 61.6

Find 42 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTACTTCTTGTTTA+AGG 0.127404 1_2:-9225942 Msa0054530:CDS
GGCTTCAATTAGAGGATATT+TGG 0.187454 1_2:-9224713 Msa0054530:intron
GTTTCGGTGACAATTGTTTC+TGG 0.235103 1_2:+9224787 None:intergenic
TACTGTGATGTTGTTATTGT+TGG 0.294384 1_2:+9226072 None:intergenic
GACCACATCTTCAGCAAATA+AGG 0.295588 1_2:-9224935 Msa0054530:CDS
CAGCAATAAGTTTGCTTCTC+AGG 0.298464 1_2:-9224170 Msa0054530:intron
CTTTGGCGATTTCAGATGAT+AGG 0.361288 1_2:+9223824 Msa0054520:CDS
ATCATCCAGGCTTCAATTAG+AGG 0.366920 1_2:-9224721 Msa0054530:CDS
ATGATTATCACAGCAGATTC+TGG 0.367431 1_2:+9224739 None:intergenic
CAAATCTTCTCAACAACATT+AGG 0.378376 1_2:+9224868 None:intergenic
TCGTACAAGGAGCTGCATTT+TGG 0.392183 1_2:+9224484 None:intergenic
GAACACGAAGTTTAAGGCTT+TGG 0.410892 1_2:+9223807 Msa0054520:CDS
TTCGTGGGCACTTGGTTAGA+AGG 0.422143 1_2:-9224544 Msa0054530:CDS
ATCCACCTTACTCTCAGTTT+CGG 0.446953 1_2:+9224771 None:intergenic
AGCTGCTGTTCGTGGGCACT+TGG 0.480789 1_2:-9224552 Msa0054530:CDS
ATTGTTGGAAAATGTGAGAA+AGG 0.480937 1_2:+9226087 None:intergenic
ATAACAACATCACAGTATTA+CGG 0.486696 1_2:-9226066 Msa0054530:five_prime_UTR
ATCTGCTGTGATAATCATCC+AGG 0.492717 1_2:-9224734 Msa0054530:CDS
AGGTTAATCACATGCGGTGG+TGG 0.495955 1_2:-9225922 Msa0054530:CDS
GAGCATGTCGTGCTCGTACA+AGG 0.502104 1_2:+9224471 None:intergenic
TGTCACCGAAACTGAGAGTA+AGG 0.509505 1_2:-9224776 Msa0054530:CDS
AATATCCTCTAATTGAAGCC+TGG 0.517071 1_2:+9224716 None:intergenic
TTGTTGGAAAATGTGAGAAA+GGG 0.523624 1_2:+9226088 None:intergenic
ATTCTAATGATAAACGCGGT+TGG 0.530998 1_2:-9225017 Msa0054530:CDS
TTTGGCGATTTCAGATGATA+GGG 0.534218 1_2:+9223825 Msa0054520:CDS
TTGGTTAGAAGGCATGCTGT+TGG 0.542923 1_2:-9224533 Msa0054530:CDS
CTCCTTATTTGCTGAAGATG+TGG 0.543734 1_2:+9224933 None:intergenic
AGATCACCATGTTGTTTCTG+AGG 0.564237 1_2:-9225887 Msa0054530:intron
AAGTTGCAAGCTGCTGTTCG+TGG 0.564977 1_2:-9224560 Msa0054530:CDS
TTAATCACATGCGGTGGTGG+TGG 0.579067 1_2:-9225919 Msa0054530:CDS
AAATGTGAAGCACACTTCTG+TGG 0.582438 1_2:-9224203 Msa0054530:CDS
GCTCAGAAGTCACATTCAGA+TGG 0.597896 1_2:-9224452 Msa0054530:CDS
TGTTTAAGGTTAATCACATG+CGG 0.607247 1_2:-9225928 Msa0054530:CDS
ATTATCACAGCAGATTCTGG+TGG 0.607983 1_2:+9224742 None:intergenic
AGTTGCAAGCTGCTGTTCGT+GGG 0.611911 1_2:-9224559 Msa0054530:CDS
TGGTATCTCTGAGCAAACAT+CGG 0.629581 1_2:+9224807 None:intergenic
CACCGAAACTGAGAGTAAGG+TGG 0.667231 1_2:-9224773 Msa0054530:CDS
TTAAGGTTAATCACATGCGG+TGG 0.672478 1_2:-9225925 Msa0054530:CDS
TATCTCTGAGCAAACATCGG+AGG 0.674060 1_2:+9224810 None:intergenic
GATTCACCTCAGAAACAACA+TGG 0.720891 1_2:+9225881 None:intergenic
CAAACATCGGAGGATAACTG+TGG 0.737595 1_2:+9224820 None:intergenic
AAGGATTCTAATGATAAACG+CGG 0.747406 1_2:-9225021 Msa0054530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTCTTTCTATTTT+TGG - chr1_2:9224254-9224273 Msa0054530:intron 10.0%
!! TCACAAAAAAAAAAAAAAAA+AGG + chr1_2:9224377-9224396 None:intergenic 10.0%
!!! TTTTATTTTCTTTCTATTTT+TGG - chr1_2:9224254-9224273 Msa0054530:intron 10.0%
!! TCACAAAAAAAAAAAAAAAA+AGG + chr1_2:9224377-9224396 None:intergenic 10.0%
!!! TTCATAATTGAATAGTTTTA+AGG - chr1_2:9224296-9224315 Msa0054530:intron 15.0%
!!! CTATTAAACGAATAAAATTT+TGG + chr1_2:9225592-9225611 None:intergenic 15.0%
!!! NNNNNNNNAGGTTTGTTTTT+TGG + chr1_2:9225908-9225927 None:intergenic 15.0%
!!! TTCATAATTGAATAGTTTTA+AGG - chr1_2:9224296-9224315 Msa0054530:intron 15.0%
!!! CTATTAAACGAATAAAATTT+TGG + chr1_2:9225592-9225611 None:intergenic 15.0%
!!! NNNNNNNNAGGTTTGTTTTT+TGG + chr1_2:9225908-9225927 None:intergenic 15.0%
!! TTATGAATCAAAATCTTGTA+AGG - chr1_2:9225279-9225298 Msa0054530:intron 20.0%
!! ACGAACAAAAGATTTATAAA+AGG + chr1_2:9225321-9225340 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG - chr1_2:9225595-9225614 Msa0054530:intron 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG - chr1_2:9225698-9225717 Msa0054530:intron 20.0%
!! ATTTAGTATGAATGAACAAA+CGG + chr1_2:9225845-9225864 None:intergenic 20.0%
!! TTATGAATCAAAATCTTGTA+AGG - chr1_2:9225279-9225298 Msa0054530:intron 20.0%
!! ACGAACAAAAGATTTATAAA+AGG + chr1_2:9225321-9225340 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG - chr1_2:9225595-9225614 Msa0054530:intron 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG - chr1_2:9225698-9225717 Msa0054530:intron 20.0%
!! ATTTAGTATGAATGAACAAA+CGG + chr1_2:9225845-9225864 None:intergenic 20.0%
! GTAAGTAAGTTTAAAAACCA+CGG + chr1_2:9223842-9223861 Msa0054520:CDS 25.0%
! ATAACAACATCACAGTATTA+CGG - chr1_2:9223883-9223902 Msa0054530:intron 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG - chr1_2:9224007-9224026 Msa0054530:intron 25.0%
! AATAAGAAAAGAAACGAAGT+TGG + chr1_2:9224185-9224204 None:intergenic 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG + chr1_2:9224463-9224482 None:intergenic 25.0%
! TATATACATCTTTATGCCAA+TGG - chr1_2:9224606-9224625 Msa0054530:intron 25.0%
! ATATACATCTTTATGCCAAT+GGG - chr1_2:9224607-9224626 Msa0054530:intron 25.0%
! GATGTAAGTTGTACAATTTA+CGG - chr1_2:9224641-9224660 Msa0054530:intron 25.0%
! TATCAACTAAGCACAAAAAA+CGG + chr1_2:9224667-9224686 None:intergenic 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG - chr1_2:9224903-9224922 Msa0054530:intron 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG - chr1_2:9225331-9225350 Msa0054530:intron 25.0%
! AAATGATGACTCAAAAACTA+CGG - chr1_2:9225523-9225542 Msa0054530:intron 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG - chr1_2:9225692-9225711 Msa0054530:intron 25.0%
! GTAAGTAAGTTTAAAAACCA+CGG + chr1_2:9223842-9223861 Msa0054520:CDS 25.0%
! ATAACAACATCACAGTATTA+CGG - chr1_2:9223883-9223902 Msa0054530:intron 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG - chr1_2:9224007-9224026 Msa0054530:intron 25.0%
! AATAAGAAAAGAAACGAAGT+TGG + chr1_2:9224185-9224204 None:intergenic 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG + chr1_2:9224463-9224482 None:intergenic 25.0%
! TATATACATCTTTATGCCAA+TGG - chr1_2:9224606-9224625 Msa0054530:intron 25.0%
! ATATACATCTTTATGCCAAT+GGG - chr1_2:9224607-9224626 Msa0054530:intron 25.0%
! GATGTAAGTTGTACAATTTA+CGG - chr1_2:9224641-9224660 Msa0054530:intron 25.0%
! TATCAACTAAGCACAAAAAA+CGG + chr1_2:9224667-9224686 None:intergenic 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG - chr1_2:9224903-9224922 Msa0054530:intron 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG - chr1_2:9225331-9225350 Msa0054530:intron 25.0%
! AAATGATGACTCAAAAACTA+CGG - chr1_2:9225523-9225542 Msa0054530:intron 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG - chr1_2:9225692-9225711 Msa0054530:intron 25.0%
TTGTTGGAAAATGTGAGAAA+GGG + chr1_2:9223864-9223883 Msa0054520:CDS 30.0%
ATTGTTGGAAAATGTGAGAA+AGG + chr1_2:9223865-9223884 Msa0054520:CDS 30.0%
! TACTGTGATGTTGTTATTGT+TGG + chr1_2:9223880-9223899 Msa0054520:CDS 30.0%
GTGAACAAAAAACATAGCTA+TGG - chr1_2:9223984-9224003 Msa0054530:intron 30.0%
! TGTTTAAGGTTAATCACATG+CGG - chr1_2:9224021-9224040 Msa0054530:intron 30.0%
TTGTGAAAAACACTAAACCT+CGG + chr1_2:9224110-9224129 Msa0054520:CDS 30.0%
!!! AATAGTTTTAAGGTGCTGTT+TGG - chr1_2:9224306-9224325 Msa0054530:intron 30.0%
CTGTTTGGATAACATTGAAT+AGG - chr1_2:9224321-9224340 Msa0054530:intron 30.0%
!! TGAAATTTTGATCGTGATTC+AGG - chr1_2:9224840-9224859 Msa0054530:CDS 30.0%
AAGGATTCTAATGATAAACG+CGG - chr1_2:9224928-9224947 Msa0054530:CDS 30.0%
GAGGATTGAAAACTAATACT+TGG + chr1_2:9225054-9225073 None:intergenic 30.0%
CAAATCTTCTCAACAACATT+AGG + chr1_2:9225084-9225103 None:intergenic 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG - chr1_2:9225254-9225273 Msa0054530:intron 30.0%
!! TGATGATGGTTATAGAGATA+GGG + chr1_2:9226034-9226053 None:intergenic 30.0%
!! ATGATGATGGTTATAGAGAT+AGG + chr1_2:9226035-9226054 None:intergenic 30.0%
TTGTTGGAAAATGTGAGAAA+GGG + chr1_2:9223864-9223883 Msa0054520:CDS 30.0%
ATTGTTGGAAAATGTGAGAA+AGG + chr1_2:9223865-9223884 Msa0054520:CDS 30.0%
! TACTGTGATGTTGTTATTGT+TGG + chr1_2:9223880-9223899 Msa0054520:CDS 30.0%
GTGAACAAAAAACATAGCTA+TGG - chr1_2:9223984-9224003 Msa0054530:intron 30.0%
! TGTTTAAGGTTAATCACATG+CGG - chr1_2:9224021-9224040 Msa0054530:intron 30.0%
TTGTGAAAAACACTAAACCT+CGG + chr1_2:9224110-9224129 Msa0054520:CDS 30.0%
!!! AATAGTTTTAAGGTGCTGTT+TGG - chr1_2:9224306-9224325 Msa0054530:intron 30.0%
CTGTTTGGATAACATTGAAT+AGG - chr1_2:9224321-9224340 Msa0054530:intron 30.0%
!! TGAAATTTTGATCGTGATTC+AGG - chr1_2:9224840-9224859 Msa0054530:CDS 30.0%
AAGGATTCTAATGATAAACG+CGG - chr1_2:9224928-9224947 Msa0054530:CDS 30.0%
GAGGATTGAAAACTAATACT+TGG + chr1_2:9225054-9225073 None:intergenic 30.0%
CAAATCTTCTCAACAACATT+AGG + chr1_2:9225084-9225103 None:intergenic 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG - chr1_2:9225254-9225273 Msa0054530:intron 30.0%
!! TGATGATGGTTATAGAGATA+GGG + chr1_2:9226034-9226053 None:intergenic 30.0%
!! ATGATGATGGTTATAGAGAT+AGG + chr1_2:9226035-9226054 None:intergenic 30.0%
TTTAATGATGTTCCAGGTCA+AGG - chr1_2:9224909-9224928 Msa0054530:intron 35.0%
TATCATTAGAATCCTTGACC+TGG + chr1_2:9224924-9224943 None:intergenic 35.0%
ATTCTAATGATAAACGCGGT+TGG - chr1_2:9224932-9224951 Msa0054530:CDS 35.0%
ATGATTATCACAGCAGATTC+TGG + chr1_2:9225213-9225232 None:intergenic 35.0%
AATATCCTCTAATTGAAGCC+TGG + chr1_2:9225236-9225255 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG - chr1_2:9225236-9225255 Msa0054530:intron 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG - chr1_2:9225336-9225355 Msa0054530:intron 35.0%
TAACCATCATCATCTTCCAT+TGG - chr1_2:9226042-9226061 Msa0054530:five_prime_UTR 35.0%
TTTGGCGATTTCAGATGATA+GGG + chr1_2:9226127-9226146 None:intergenic 35.0%
TTTAATGATGTTCCAGGTCA+AGG - chr1_2:9224909-9224928 Msa0054530:intron 35.0%
TATCATTAGAATCCTTGACC+TGG + chr1_2:9224924-9224943 None:intergenic 35.0%
ATTCTAATGATAAACGCGGT+TGG - chr1_2:9224932-9224951 Msa0054530:CDS 35.0%
ATGATTATCACAGCAGATTC+TGG + chr1_2:9225213-9225232 None:intergenic 35.0%
AATATCCTCTAATTGAAGCC+TGG + chr1_2:9225236-9225255 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG - chr1_2:9225236-9225255 Msa0054530:intron 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG - chr1_2:9225336-9225355 Msa0054530:intron 35.0%
TAACCATCATCATCTTCCAT+TGG - chr1_2:9226042-9226061 Msa0054530:five_prime_UTR 35.0%
TTTGGCGATTTCAGATGATA+GGG + chr1_2:9226127-9226146 None:intergenic 35.0%
TTAAGGTTAATCACATGCGG+TGG - chr1_2:9224024-9224043 Msa0054530:intron 40.0%
!! AGATCACCATGTTGTTTCTG+AGG - chr1_2:9224062-9224081 Msa0054530:intron 40.0%
GATTCACCTCAGAAACAACA+TGG + chr1_2:9224071-9224090 Msa0054520:intron 40.0%
CTCTCTCTTAGATAATTCCG+AGG - chr1_2:9224090-9224109 Msa0054530:intron 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG - chr1_2:9224146-9224165 Msa0054530:intron 40.0%
TTGGTTGCATGAAACATCCT+CGG + chr1_2:9224166-9224185 None:intergenic 40.0%
AAACTTGATCTCGTGGATCT+AGG + chr1_2:9224718-9224737 None:intergenic 40.0%
ATGCACAAAACTTGATCTCG+TGG + chr1_2:9224725-9224744 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG - chr1_2:9224941-9224960 Msa0054530:CDS 40.0%
GACCACATCTTCAGCAAATA+AGG - chr1_2:9225014-9225033 Msa0054530:CDS 40.0%
! CTCCTTATTTGCTGAAGATG+TGG + chr1_2:9225019-9225038 None:intergenic 40.0%
TGGTATCTCTGAGCAAACAT+CGG + chr1_2:9225145-9225164 None:intergenic 40.0%
GTTTCGGTGACAATTGTTTC+TGG + chr1_2:9225165-9225184 None:intergenic 40.0%
ATCCACCTTACTCTCAGTTT+CGG + chr1_2:9225181-9225200 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG + chr1_2:9225210-9225229 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG - chr1_2:9225215-9225234 Msa0054530:intron 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr1_2:9225228-9225247 Msa0054530:intron 40.0%
AAAACGACACACTTAGAGCA+AGG + chr1_2:9225680-9225699 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG - chr1_2:9225746-9225765 Msa0054530:intron 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG - chr1_2:9225779-9225798 Msa0054530:intron 40.0%
ACAAACGGATGACGTTAAAC+AGG + chr1_2:9225830-9225849 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG - chr1_2:9225874-9225893 Msa0054530:intron 40.0%
ATTCCAACAGCTTCAATGGA+AGG + chr1_2:9225880-9225899 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG + chr1_2:9225884-9225903 None:intergenic 40.0%
CTTTGGCGATTTCAGATGAT+AGG + chr1_2:9226128-9226147 None:intergenic 40.0%
TTAAGGTTAATCACATGCGG+TGG - chr1_2:9224024-9224043 Msa0054530:intron 40.0%
!! AGATCACCATGTTGTTTCTG+AGG - chr1_2:9224062-9224081 Msa0054530:intron 40.0%
GATTCACCTCAGAAACAACA+TGG + chr1_2:9224071-9224090 Msa0054520:intron 40.0%
CTCTCTCTTAGATAATTCCG+AGG - chr1_2:9224090-9224109 Msa0054530:intron 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG - chr1_2:9224146-9224165 Msa0054530:intron 40.0%
TTGGTTGCATGAAACATCCT+CGG + chr1_2:9224166-9224185 None:intergenic 40.0%
AAACTTGATCTCGTGGATCT+AGG + chr1_2:9224718-9224737 None:intergenic 40.0%
ATGCACAAAACTTGATCTCG+TGG + chr1_2:9224725-9224744 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG - chr1_2:9224941-9224960 Msa0054530:CDS 40.0%
GACCACATCTTCAGCAAATA+AGG - chr1_2:9225014-9225033 Msa0054530:CDS 40.0%
! CTCCTTATTTGCTGAAGATG+TGG + chr1_2:9225019-9225038 None:intergenic 40.0%
TGGTATCTCTGAGCAAACAT+CGG + chr1_2:9225145-9225164 None:intergenic 40.0%
GTTTCGGTGACAATTGTTTC+TGG + chr1_2:9225165-9225184 None:intergenic 40.0%
ATCCACCTTACTCTCAGTTT+CGG + chr1_2:9225181-9225200 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG + chr1_2:9225210-9225229 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG - chr1_2:9225215-9225234 Msa0054530:intron 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr1_2:9225228-9225247 Msa0054530:intron 40.0%
AAAACGACACACTTAGAGCA+AGG + chr1_2:9225680-9225699 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG - chr1_2:9225746-9225765 Msa0054530:intron 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG - chr1_2:9225779-9225798 Msa0054530:intron 40.0%
ACAAACGGATGACGTTAAAC+AGG + chr1_2:9225830-9225849 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG - chr1_2:9225874-9225893 Msa0054530:intron 40.0%
ATTCCAACAGCTTCAATGGA+AGG + chr1_2:9225880-9225899 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG + chr1_2:9225884-9225903 None:intergenic 40.0%
CTTTGGCGATTTCAGATGAT+AGG + chr1_2:9226128-9226147 None:intergenic 40.0%
!!! AAGGAGCATTTTAAGGTCCG+TGG - chr1_2:9223822-9223841 Msa0054530:CDS 45.0%
CATCAAAAGTCACAGCCCAT+TGG + chr1_2:9224625-9224644 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG - chr1_2:9224956-9224975 Msa0054530:CDS 45.0%
AACAACATTAGGCTCAGCTG+AGG + chr1_2:9225073-9225092 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG + chr1_2:9225132-9225151 None:intergenic 45.0%
TATCTCTGAGCAAACATCGG+AGG + chr1_2:9225142-9225161 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG - chr1_2:9225173-9225192 Msa0054530:intron 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG - chr1_2:9225416-9225435 Msa0054530:intron 45.0%
! TCGTACAAGGAGCTGCATTT+TGG + chr1_2:9225468-9225487 None:intergenic 45.0%
GCTCAGAAGTCACATTCAGA+TGG - chr1_2:9225497-9225516 Msa0054530:intron 45.0%
CCACCAATGGAAGATGATGA+TGG + chr1_2:9226048-9226067 None:intergenic 45.0%
CCATCATCATCTTCCATTGG+TGG - chr1_2:9226045-9226064 Msa0054530:five_prime_UTR 45.0%
AGAGAAACAGAAGCCACCAA+TGG + chr1_2:9226061-9226080 None:intergenic 45.0%
GGACCTTAAAATGCTCCTTC+AGG + chr1_2:9223821-9223840 Msa0054520:CDS 45.0%
!!! AAGGAGCATTTTAAGGTCCG+TGG - chr1_2:9223822-9223841 Msa0054530:CDS 45.0%
CATCAAAAGTCACAGCCCAT+TGG + chr1_2:9224625-9224644 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG - chr1_2:9224956-9224975 Msa0054530:CDS 45.0%
AACAACATTAGGCTCAGCTG+AGG + chr1_2:9225073-9225092 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG + chr1_2:9225132-9225151 None:intergenic 45.0%
TATCTCTGAGCAAACATCGG+AGG + chr1_2:9225142-9225161 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG - chr1_2:9225173-9225192 Msa0054530:intron 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG - chr1_2:9225416-9225435 Msa0054530:intron 45.0%
! TCGTACAAGGAGCTGCATTT+TGG + chr1_2:9225468-9225487 None:intergenic 45.0%
GCTCAGAAGTCACATTCAGA+TGG - chr1_2:9225497-9225516 Msa0054530:intron 45.0%
CCACCAATGGAAGATGATGA+TGG + chr1_2:9226048-9226067 None:intergenic 45.0%
CCATCATCATCTTCCATTGG+TGG - chr1_2:9226045-9226064 Msa0054530:five_prime_UTR 45.0%
AGAGAAACAGAAGCCACCAA+TGG + chr1_2:9226061-9226080 None:intergenic 45.0%
AGGTTAATCACATGCGGTGG+TGG - chr1_2:9224027-9224046 Msa0054530:intron 50.0%
! TTAATCACATGCGGTGGTGG+TGG - chr1_2:9224030-9224049 Msa0054530:intron 50.0%
TGATCTCGTGGATCTAGGCT+CGG + chr1_2:9224713-9224732 None:intergenic 50.0%
CACCGAAACTGAGAGTAAGG+TGG - chr1_2:9225176-9225195 Msa0054530:intron 50.0%
AAGTTGCAAGCTGCTGTTCG+TGG - chr1_2:9225389-9225408 Msa0054530:intron 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG - chr1_2:9225390-9225409 Msa0054530:intron 50.0%
TTCGTGGGCACTTGGTTAGA+AGG - chr1_2:9225405-9225424 Msa0054530:intron 50.0%
AGGTTAATCACATGCGGTGG+TGG - chr1_2:9224027-9224046 Msa0054530:intron 50.0%
! TTAATCACATGCGGTGGTGG+TGG - chr1_2:9224030-9224049 Msa0054530:intron 50.0%
TGATCTCGTGGATCTAGGCT+CGG + chr1_2:9224713-9224732 None:intergenic 50.0%
CACCGAAACTGAGAGTAAGG+TGG - chr1_2:9225176-9225195 Msa0054530:intron 50.0%
AAGTTGCAAGCTGCTGTTCG+TGG - chr1_2:9225389-9225408 Msa0054530:intron 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG - chr1_2:9225390-9225409 Msa0054530:intron 50.0%
TTCGTGGGCACTTGGTTAGA+AGG - chr1_2:9225405-9225424 Msa0054530:intron 50.0%
GAGCATGTCGTGCTCGTACA+AGG + chr1_2:9225481-9225500 None:intergenic 55.0%
GAGCATGTCGTGCTCGTACA+AGG + chr1_2:9225481-9225500 None:intergenic 55.0%
TCGTGGATCTAGGCTCGGCA+TGG + chr1_2:9224708-9224727 None:intergenic 60.0%
AGCTGCTGTTCGTGGGCACT+TGG - chr1_2:9225397-9225416 Msa0054530:intron 60.0%
TCGTGGATCTAGGCTCGGCA+TGG + chr1_2:9224708-9224727 None:intergenic 60.0%
AGCTGCTGTTCGTGGGCACT+TGG - chr1_2:9225397-9225416 Msa0054530:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9223821 9226150 9223821 ID=Msa0054530;Name=Msa0054530
chr1_2 mRNA 9223821 9226150 9223821 ID=Msa0054530-mRNA-1;Parent=Msa0054530;Name=Msa0054530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=182|0.6|0.5|0.83|1|0.83|6|0|244
chr1_2 exon 9223821 9223886 9223821 ID=Msa0054530-mRNA-1:exon:3420;Parent=Msa0054530-mRNA-1
chr1_2 exon 9224171 9224251 9224171 ID=Msa0054530-mRNA-1:exon:3419;Parent=Msa0054530-mRNA-1
chr1_2 exon 9224427 9224618 9224427 ID=Msa0054530-mRNA-1:exon:3418;Parent=Msa0054530-mRNA-1
chr1_2 exon 9224714 9224895 9224714 ID=Msa0054530-mRNA-1:exon:3417;Parent=Msa0054530-mRNA-1
chr1_2 exon 9224917 9225046 9224917 ID=Msa0054530-mRNA-1:exon:3416;Parent=Msa0054530-mRNA-1
chr1_2 exon 9225888 9226150 9225888 ID=Msa0054530-mRNA-1:exon:3415;Parent=Msa0054530-mRNA-1
chr1_2 five_prime_UTR 9225969 9226150 9225969 ID=Msa0054530-mRNA-1:five_prime_utr;Parent=Msa0054530-mRNA-1
chr1_2 CDS 9225888 9225968 9225888 ID=Msa0054530-mRNA-1:cds;Parent=Msa0054530-mRNA-1
chr1_2 CDS 9224917 9225046 9224917 ID=Msa0054530-mRNA-1:cds;Parent=Msa0054530-mRNA-1
chr1_2 CDS 9224714 9224895 9224714 ID=Msa0054530-mRNA-1:cds;Parent=Msa0054530-mRNA-1
chr1_2 CDS 9224427 9224618 9224427 ID=Msa0054530-mRNA-1:cds;Parent=Msa0054530-mRNA-1
chr1_2 CDS 9224171 9224251 9224171 ID=Msa0054530-mRNA-1:cds;Parent=Msa0054530-mRNA-1
chr1_2 CDS 9223821 9223886 9223821 ID=Msa0054530-mRNA-1:cds;Parent=Msa0054530-mRNA-1
Gene Sequence

>Msa0054530

ATGGTGAAATCTACTTCTTGTTTAAGGTTAATCACATGCGGTGGTGGTGGTGACAAAGAAGATCACCATGTTGTTTCTGAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAACAACAGAGACCACATCTTCAGCAAATAAGGAGACTTCAGAATATCCAACTGAGCCTAATGTTGTTGAGAAGATTTGTACGACAGATTTCTCTAATGAGAAGCCACAGTTATCCTCCGATGTTTGCTCAGAGATACCAGAAACAATTGTCACCGAAACTGAGAGTAAGGTGGATGTCAATCCACCAGAATCTGCTGTGATAATCATCCAGGCTTCAATTAGAGGATATTTGGCTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTTAGAAGGCATGCTGTTGGAACATTGCGATGTGTTCAAGCTATTGCCAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACATTCAGATGGAAAAAATGATGACTCAAAAACTACGGATAATGAGCATTACACTGCTGAATCAAATGTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTTCTCAGCTTCAATTTCAATCTCTTCTCTCAGCTTCTCAGCACGATCCCTATCATCTGAAATCGCCAAAGCCT

Protein sequence

>Msa0054530

MVKSTSCLRLITCGGGGDKEDHHVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSSANKETSEYPTEPNVVEKICTTDFSNEKPQLSSDVCSEIPETIVTETESKVDVNPPESAVIIIQASIRGYLARRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQLLVRARHAQKSHSDGKNDDSKTTDNEHYTAESNVKHTSVEKLLSNKFASQLQFQSLLSASQHDPYHLKSPKP