Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368500 | XP_024635309.1 | 83.205 | 518 | 28 | 4 | 1 | 459 | 1 | 518 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368500 | sp|Q00081|GLGL1_SOLTU | 79.420 | 379 | 74 | 1 | 85 | 459 | 92 | 470 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368500 | G7J745 | 83.205 | 518 | 28 | 4 | 1 | 459 | 1 | 518 | 0.0 | 858 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365770 | Msa1368500 | 0.820134 | 8.053291e-53 | -8.615850e-47 |
| Msa1368500 | Msa1372760 | 0.807224 | 5.610055e-50 | -8.615850e-47 |
| Msa1368500 | Msa1422420 | 0.812980 | 3.227084e-51 | -8.615850e-47 |
| Msa1368500 | Msa1425090 | 0.802943 | 4.412271e-49 | -8.615850e-47 |
| Msa1368500 | Msa1459050 | 0.801867 | 7.353699e-49 | -8.615850e-47 |
| Msa0623070 | Msa1368500 | 0.814862 | 1.241264e-51 | -8.615850e-47 |
| Msa0625190 | Msa1368500 | 0.804585 | 2.013000e-49 | -8.615850e-47 |
| Msa0683980 | Msa1368500 | 0.814400 | 1.571081e-51 | -8.615850e-47 |
| Msa0703050 | Msa1368500 | 0.803262 | 3.791000e-49 | -8.615850e-47 |
| Msa0798860 | Msa1368500 | 0.816702 | 4.826348e-52 | -8.615850e-47 |
| Msa0832970 | Msa1368500 | 0.800183 | 1.623944e-48 | -8.615850e-47 |
| Msa0237310 | Msa1368500 | 0.807872 | 4.087247e-50 | -8.615850e-47 |
| Msa0238260 | Msa1368500 | 0.815431 | 9.277051e-52 | -8.615850e-47 |
| Msa1269480 | Msa1368500 | 0.807439 | 5.053363e-50 | -8.615850e-47 |
| Msa1299960 | Msa1368500 | 0.801052 | 1.080125e-48 | -8.615850e-47 |
| Msa0386740 | Msa1368500 | 0.884792 | 1.416542e-71 | -8.615850e-47 |
| Msa0439970 | Msa1368500 | 0.807096 | 5.972716e-50 | -8.615850e-47 |
| Msa1019000 | Msa1368500 | 0.810295 | 1.237564e-50 | -8.615850e-47 |
| Msa1083840 | Msa1368500 | 0.804100 | 2.540613e-49 | -8.615850e-47 |
| Msa0274730 | Msa1368500 | 0.811087 | 8.342069e-51 | -8.615850e-47 |
| Msa0275690 | Msa1368500 | 0.832915 | 7.199641e-56 | -8.615850e-47 |
| Msa0316270 | Msa1368500 | 0.811283 | 7.565942e-51 | -8.615850e-47 |
| Msa1131050 | Msa1368500 | 0.802539 | 5.348615e-49 | -8.615850e-47 |
| Msa1143270 | Msa1368500 | 0.802118 | 6.529271e-49 | -8.615850e-47 |
| Msa1188710 | Msa1368500 | 0.823526 | 1.320836e-53 | -8.615850e-47 |
| Msa1207220 | Msa1368500 | 0.801491 | 8.782414e-49 | -8.615850e-47 |
| Msa0516440 | Msa1368500 | 0.807277 | 5.467659e-50 | -8.615850e-47 |
| Msa0523780 | Msa1368500 | 0.874181 | 8.253750e-68 | -8.615850e-47 |
| Msa0873220 | Msa1368500 | 0.806586 | 7.653429e-50 | -8.615850e-47 |
| Msa0906610 | Msa1368500 | 0.812134 | 4.938433e-51 | -8.615850e-47 |
| Msa0938480 | Msa1368500 | 0.840408 | 8.853480e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368500 | MtrunA17_Chr4g0035171 | 67.992 | 528 | 100 | 6 | 1 | 459 | 1 | 528 | 0.0 | 716 |
| Msa1368500 | MtrunA17_Chr3g0141761 | 73.087 | 379 | 97 | 2 | 86 | 459 | 152 | 530 | 0.0 | 587 |
| Msa1368500 | MtrunA17_Chr4g0074531 | 66.491 | 379 | 122 | 2 | 86 | 459 | 143 | 521 | 0.0 | 546 |
| Msa1368500 | MtrunA17_Chr7g0271011 | 64.599 | 387 | 124 | 3 | 86 | 459 | 150 | 536 | 0.0 | 524 |
| Msa1368500 | MtrunA17_Chr3g0144741 | 76.036 | 338 | 26 | 3 | 1 | 283 | 1 | 338 | 3.56e-177 | 500 |
| Msa1368500 | MtrunA17_Chr5g0447341 | 52.618 | 382 | 169 | 7 | 85 | 459 | 139 | 515 | 1.69e-137 | 405 |
| Msa1368500 | MtrunA17_Chr3g0120471 | 53.141 | 382 | 164 | 8 | 85 | 459 | 138 | 511 | 1.33e-135 | 400 |
| Msa1368500 | MtrunA17_Chr0c30g0494071 | 51.436 | 383 | 143 | 6 | 85 | 459 | 68 | 415 | 4.81e-126 | 372 |
| Msa1368500 | MtrunA17_Chr3g0144731 | 94.268 | 157 | 5 | 1 | 307 | 459 | 5 | 161 | 1.47e-103 | 305 |
| Msa1368500 | MtrunA17_Chr4g0077071 | 43.038 | 79 | 44 | 1 | 296 | 373 | 2 | 80 | 6.04e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368500 | AT4G39210.2 | 74.868 | 378 | 91 | 1 | 86 | 459 | 144 | 521 | 0.0 | 613 |
| Msa1368500 | AT4G39210.1 | 74.868 | 378 | 91 | 1 | 86 | 459 | 144 | 521 | 0.0 | 613 |
| Msa1368500 | AT1G27680.1 | 74.934 | 379 | 90 | 2 | 86 | 459 | 140 | 518 | 0.0 | 611 |
| Msa1368500 | AT2G21590.2 | 75.397 | 378 | 89 | 1 | 86 | 459 | 146 | 523 | 0.0 | 595 |
| Msa1368500 | AT2G21590.3 | 75.397 | 378 | 89 | 1 | 86 | 459 | 146 | 523 | 0.0 | 595 |
| Msa1368500 | AT2G21590.5 | 75.397 | 378 | 89 | 1 | 86 | 459 | 146 | 523 | 0.0 | 595 |
| Msa1368500 | AT2G21590.4 | 75.397 | 378 | 89 | 1 | 86 | 459 | 146 | 523 | 0.0 | 595 |
| Msa1368500 | AT2G21590.7 | 75.397 | 378 | 89 | 1 | 86 | 459 | 146 | 523 | 0.0 | 595 |
| Msa1368500 | AT2G21590.1 | 75.397 | 378 | 89 | 1 | 86 | 459 | 146 | 523 | 0.0 | 595 |
| Msa1368500 | AT2G21590.6 | 75.397 | 378 | 89 | 1 | 86 | 459 | 146 | 523 | 0.0 | 595 |
| Msa1368500 | AT5G19220.1 | 64.815 | 378 | 129 | 1 | 86 | 459 | 145 | 522 | 0.0 | 539 |
| Msa1368500 | AT5G48300.1 | 53.543 | 381 | 165 | 7 | 86 | 459 | 145 | 520 | 3.33e-138 | 407 |
| Msa1368500 | AT1G05610.1 | 37.824 | 386 | 211 | 11 | 85 | 459 | 109 | 476 | 1.21e-80 | 258 |
| Msa1368500 | AT1G05610.2 | 37.629 | 388 | 213 | 11 | 86 | 459 | 110 | 482 | 2.30e-80 | 257 |
Find 163 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCTTGTGTTGGGATTT+TGG | 0.151557 | tig0018646:-187257 | None:intergenic |
| CACAAAAGTAAAATAAATTA+AGG | 0.198905 | tig0018646:+191195 | Msa1368500:three_prime_UTR |
| AGGAAAGGAAGTTGCCTTTA+TGG | 0.200848 | tig0018646:-187307 | None:intergenic |
| GAGTAACACTTACTTAATTT+TGG | 0.212813 | tig0018646:-190630 | None:intergenic |
| CATATCGCCCGCACCTATTT+TGG | 0.215257 | tig0018646:+188253 | Msa1368500:CDS |
| AAATCATTCCTTCCGCTATA+AGG | 0.235771 | tig0018646:+189562 | Msa1368500:CDS |
| CAGCATGTTTGATCTTCTTC+TGG | 0.237340 | tig0018646:-187601 | None:intergenic |
| CAGTGATACAATAATTTAAA+AGG | 0.248078 | tig0018646:-191275 | None:intergenic |
| GAGATCACTGCAATGGCTTC+TGG | 0.252509 | tig0018646:+187449 | Msa1368500:exon |
| AACACTCCCTCCCGCATCTT+TGG | 0.254644 | tig0018646:+191051 | Msa1368500:three_prime_UTR |
| GTTGATGCCATTACCAAAAT+AGG | 0.260803 | tig0018646:-188266 | None:intergenic |
| CTCGCCATATATTGCATCTA+TGG | 0.272650 | tig0018646:+189461 | Msa1368500:CDS |
| ATTATTAATTTATTAATTAT+AGG | 0.274466 | tig0018646:+187185 | Msa1368500:five_prime_UTR |
| GAAAGATCACGTTTAGATTA+TGG | 0.279986 | tig0018646:+190114 | Msa1368500:CDS |
| CACTTGCAAGGGAGAGGATA+TGG | 0.290138 | tig0018646:-191243 | None:intergenic |
| ATTTCTTGCACCTACCTCTT+TGG | 0.304070 | tig0018646:-189766 | None:intergenic |
| ACACTCCCTCCCGCATCTTT+GGG | 0.308517 | tig0018646:+191052 | Msa1368500:three_prime_UTR |
| TGCAAGAAGAGAAGCAATTT+CGG | 0.328432 | tig0018646:-190573 | None:intergenic |
| GAAAGCGGCATGTGTAAAAT+AGG | 0.331458 | tig0018646:+191115 | Msa1368500:three_prime_UTR |
| GGAGACTACTGGGAAGATAT+TGG | 0.344965 | tig0018646:+189705 | Msa1368500:CDS |
| AGCAAGGTTAGCATCGTAAA+AGG | 0.345758 | tig0018646:-189739 | None:intergenic |
| TTCAGCCGTGCATCAGATTA+CGG | 0.351349 | tig0018646:+189193 | Msa1368500:intron |
| TGAGCTTACCAAGGAACCTT+TGG | 0.354621 | tig0018646:-187654 | None:intergenic |
| ATTGACAAGAATGCAAAGAT+TGG | 0.362465 | tig0018646:+190754 | Msa1368500:CDS |
| GAATCCAGGAGATGTGAAAA+TGG | 0.366447 | tig0018646:-189888 | None:intergenic |
| AAGAGAAGCAATTTCGGATT+CGG | 0.370014 | tig0018646:-190567 | None:intergenic |
| GAAGCTTCCATAACAGTTCC+TGG | 0.375118 | tig0018646:+187546 | Msa1368500:CDS |
| AAAAGGGGTGTTGGGTTTAA+CGG | 0.375954 | tig0018646:-187480 | None:intergenic |
| GAAACATCCATGGGAGATAA+TGG | 0.382042 | tig0018646:-190055 | None:intergenic |
| CACTTATTTCCCGCTTCTCC+TGG | 0.385587 | tig0018646:-188643 | None:intergenic |
| TTCACGAGAAATCTTGTGTT+GGG | 0.388174 | tig0018646:-187264 | None:intergenic |
| TGGAGCTGTCATATAAATAA+TGG | 0.388609 | tig0018646:+190972 | Msa1368500:exon |
| TCAATTCTGCTTCCCTCAAC+CGG | 0.402666 | tig0018646:+188230 | Msa1368500:CDS |
| GCTTTCAGATCAGCCCCTTT+CGG | 0.407207 | tig0018646:-189265 | None:intergenic |
| AATCATTCCTTCCGCTATAA+GGG | 0.411692 | tig0018646:+189563 | Msa1368500:CDS |
| CGGATGTAGAACCCATCTTC+TGG | 0.415604 | tig0018646:-190907 | None:intergenic |
| CAACTTTGGTGATGGATTTG+TGG | 0.416793 | tig0018646:+188285 | Msa1368500:CDS |
| GTATTCCTTCCAATTCCAAT+TGG | 0.417493 | tig0018646:-190608 | None:intergenic |
| GAGCTTACCAAGGAACCTTT+GGG | 0.417954 | tig0018646:-187653 | None:intergenic |
| TGCCCTCATTTATGAGACTA+AGG | 0.422533 | tig0018646:+187841 | Msa1368500:CDS |
| GGAAAGGTCCCAATTGGAAT+TGG | 0.427599 | tig0018646:+190599 | Msa1368500:CDS |
| AGCACACGAAATTGTAATAT+CGG | 0.428769 | tig0018646:-189013 | None:intergenic |
| TACAATTTCGTGTGCTGCTG+TGG | 0.429809 | tig0018646:+189020 | Msa1368500:CDS |
| TTTGGTAATGGCATCAACTT+TGG | 0.430851 | tig0018646:+188271 | Msa1368500:CDS |
| TATAGCGGAAGGAATGATTT+CGG | 0.431636 | tig0018646:-189559 | None:intergenic |
| TGTCGAAAATGTATTGATCT+TGG | 0.433601 | tig0018646:+188841 | Msa1368500:CDS |
| CGGCAGTTGTCAATCTTTGT+TGG | 0.434231 | tig0018646:-189917 | None:intergenic |
| CAGTGACCCAGGAACTGTTA+TGG | 0.438039 | tig0018646:-187553 | None:intergenic |
| TTCTCTTCTTGCAGAGGGAA+AGG | 0.438360 | tig0018646:+190583 | Msa1368500:CDS |
| AAGCAATTTCGGATTCGGTT+TGG | 0.438840 | tig0018646:-190562 | None:intergenic |
| TATCCTACATCTAATGACTT+TGG | 0.443836 | tig0018646:+189534 | Msa1368500:CDS |
| TTTACAGGACACTGTAATGA+TGG | 0.445182 | tig0018646:+190526 | Msa1368500:intron |
| TGATGATCCCAAAGGTTCCT+TGG | 0.446928 | tig0018646:+187646 | Msa1368500:CDS |
| TGCGGGCGATATGCCGGTTG+AGG | 0.449127 | tig0018646:-188243 | None:intergenic |
| TCTGGCTCATACTTCCATAA+AGG | 0.453773 | tig0018646:+187293 | Msa1368500:five_prime_UTR |
| CGTGTGCTGCTGTGGGTGAC+AGG | 0.464034 | tig0018646:+189028 | Msa1368500:CDS |
| TTAGTGGCTATTTCATGAGC+TGG | 0.465861 | tig0018646:+190995 | Msa1368500:three_prime_UTR |
| GCAATATATGGCGAGTTCAA+TGG | 0.467132 | tig0018646:-189453 | None:intergenic |
| TTGACAAGAATGCAAAGATT+GGG | 0.468391 | tig0018646:+190755 | Msa1368500:CDS |
| TCTATGATACTTGGAGCAAC+AGG | 0.469650 | tig0018646:-191346 | None:intergenic |
| TTTGTTGGTGGTAGGAATCC+AGG | 0.470257 | tig0018646:-189902 | None:intergenic |
| AAGTAGATACCTCTCGTCTT+GGG | 0.473092 | tig0018646:+189415 | Msa1368500:CDS |
| TATTCCTTCCAATTCCAATT+GGG | 0.473128 | tig0018646:-190607 | None:intergenic |
| GTCTATCGGTCTATGATACT+TGG | 0.477449 | tig0018646:-191355 | None:intergenic |
| GAAAATGTATTGATCTTGGC+GGG | 0.477652 | tig0018646:+188845 | Msa1368500:CDS |
| CACTCCCTCCCGCATCTTTG+GGG | 0.478888 | tig0018646:+191053 | Msa1368500:three_prime_UTR |
| TCGCCATATATTGCATCTAT+GGG | 0.481636 | tig0018646:+189462 | Msa1368500:CDS |
| CAACAAAGATTGACAACTGC+CGG | 0.485452 | tig0018646:+189918 | Msa1368500:CDS |
| GCAGAGGGAAAGGTCCCAAT+TGG | 0.488186 | tig0018646:+190593 | Msa1368500:CDS |
| ACACAAACACCAGGAGAAGC+GGG | 0.489342 | tig0018646:+188634 | Msa1368500:CDS |
| GCGGGAAATAAGTGGTTTCA+AGG | 0.491407 | tig0018646:+188652 | Msa1368500:CDS |
| AGGTGTCCTTTGCACTTGCA+AGG | 0.491764 | tig0018646:-191255 | None:intergenic |
| GTCATATAAATAATGGTTAG+TGG | 0.492267 | tig0018646:+190979 | Msa1368500:exon |
| AGCTGGTTTCTCTGAGGCGT+CGG | 0.494617 | tig0018646:+191012 | Msa1368500:three_prime_UTR |
| ACAAAAGTAAAATAAATTAA+GGG | 0.497464 | tig0018646:+191196 | Msa1368500:three_prime_UTR |
| ATTTCTCGTGAAAAGAGGTC+TGG | 0.498275 | tig0018646:+187275 | Msa1368500:five_prime_UTR |
| GGATCATAAAACTGAAACTT+CGG | 0.499079 | tig0018646:-189857 | None:intergenic |
| TTTCACGAGAAATCTTGTGT+TGG | 0.500647 | tig0018646:-187265 | None:intergenic |
| AGCAGGAATCACAGTCGTAA+TGG | 0.503836 | tig0018646:+190930 | Msa1368500:CDS |
| AATAGGTGCGGGCGATATGC+CGG | 0.504786 | tig0018646:-188249 | None:intergenic |
| GACACAAACACCAGGAGAAG+CGG | 0.505212 | tig0018646:+188633 | Msa1368500:CDS |
| GTATGGTGACTGTTGCAAAA+TGG | 0.505746 | tig0018646:+191079 | Msa1368500:three_prime_UTR |
| ACAATTTACCTGGATATTTG+AGG | 0.505775 | tig0018646:+188693 | Msa1368500:CDS |
| GATGTGAAAATGGGTGTCTT+GGG | 0.507817 | tig0018646:-189878 | None:intergenic |
| AGATGTGAAAATGGGTGTCT+TGG | 0.507882 | tig0018646:-189879 | None:intergenic |
| CAAGTAGATACCTCTCGTCT+TGG | 0.508446 | tig0018646:+189414 | Msa1368500:CDS |
| AATGATTAGAGTGGTGATGA+AGG | 0.510104 | tig0018646:-187327 | None:intergenic |
| CAAGGTCCATGTAATCCATT+CGG | 0.514352 | tig0018646:-188880 | None:intergenic |
| GTTGAATCGTACATTCTCTC+AGG | 0.518546 | tig0018646:-190077 | None:intergenic |
| CCTTTGCACTTGCAAGGGAG+AGG | 0.520026 | tig0018646:-191249 | None:intergenic |
| GAGAAGGCAACGATAGAAGA+TGG | 0.521411 | tig0018646:+190952 | Msa1368500:CDS |
| ACAAGATTTCTCGTGAAAAG+AGG | 0.522078 | tig0018646:+187270 | Msa1368500:five_prime_UTR |
| GGATTACATGGACCTTGTGC+AGG | 0.524100 | tig0018646:+188886 | Msa1368500:CDS |
| CAGTTGTCAATCTTTGTTGG+TGG | 0.526500 | tig0018646:-189914 | None:intergenic |
| GCCATTACCAAAATAGGTGC+GGG | 0.529257 | tig0018646:-188260 | None:intergenic |
| TTTAGCTACCTCAAATATCC+AGG | 0.529473 | tig0018646:-188701 | None:intergenic |
| GAAGCAGATAGACCAGAAGA+TGG | 0.530049 | tig0018646:+190895 | Msa1368500:CDS |
| CGGGCATAGTATTACTCAGC+AGG | 0.531018 | tig0018646:+191377 | Msa1368500:three_prime_UTR |
| AGCCCTTAGTCTCATAAATG+AGG | 0.535413 | tig0018646:-187844 | None:intergenic |
| GCGGGCGATATGCCGGTTGA+GGG | 0.537648 | tig0018646:-188242 | None:intergenic |
| GATCCAAAGTCATTAGATGT+AGG | 0.539641 | tig0018646:-189537 | None:intergenic |
| TTTATACCGAATGGATTACA+TGG | 0.541016 | tig0018646:+188874 | Msa1368500:CDS |
| GTTTCTTGAGATCACTGCAA+TGG | 0.541462 | tig0018646:+187442 | Msa1368500:exon |
| AATCCAGGAGATGTGAAAAT+GGG | 0.542716 | tig0018646:-189887 | None:intergenic |
| TGTCAATCTTTGTTGGTGGT+AGG | 0.544891 | tig0018646:-189910 | None:intergenic |
| ATTGCTTCTCTTCTTGCAGA+GGG | 0.546628 | tig0018646:+190578 | Msa1368500:CDS |
| GGTGTCCTTTGCACTTGCAA+GGG | 0.547102 | tig0018646:-191254 | None:intergenic |
| ATGCTGTGAGACAATTTACC+TGG | 0.547645 | tig0018646:+188683 | Msa1368500:CDS |
| TTAGAGTGGTGATGAAGGAA+AGG | 0.548953 | tig0018646:-187322 | None:intergenic |
| CAGGAGAAGCGGGAAATAAG+TGG | 0.554089 | tig0018646:+188644 | Msa1368500:CDS |
| TGAAAGCAAAATGATTAGAG+TGG | 0.555391 | tig0018646:-187336 | None:intergenic |
| TGGTTTCTCTGAGGCGTCGG+AGG | 0.556783 | tig0018646:+191015 | Msa1368500:three_prime_UTR |
| ATTCTCTCAGGAAACATCCA+TGG | 0.560478 | tig0018646:-190065 | None:intergenic |
| CGAAAATGTATTGATCTTGG+CGG | 0.562354 | tig0018646:+188844 | Msa1368500:CDS |
| GTGGATGCCATTATCTCCCA+TGG | 0.562721 | tig0018646:+190048 | Msa1368500:CDS |
| TTACAGGACACTGTAATGAT+GGG | 0.563295 | tig0018646:+190527 | Msa1368500:intron |
| ACGATTCAACACTCCATTGT+GGG | 0.563420 | tig0018646:+190090 | Msa1368500:CDS |
| AATGGCATCAACTTTGGTGA+TGG | 0.564301 | tig0018646:+188277 | Msa1368500:CDS |
| GTAATACTATGCCCGTCTAT+CGG | 0.565630 | tig0018646:-191369 | None:intergenic |
| GATGGGTTCTACATCCGAGC+AGG | 0.567281 | tig0018646:+190913 | Msa1368500:CDS |
| GGCGAGTTCAATGGATCTTG+TGG | 0.567793 | tig0018646:-189444 | None:intergenic |
| AGTATCATAGACCGATAGAC+GGG | 0.569553 | tig0018646:+191358 | Msa1368500:three_prime_UTR |
| ACTCCCTCCCGCATCTTTGG+GGG | 0.569992 | tig0018646:+191054 | Msa1368500:three_prime_UTR |
| GACATTGTGTTCCCTTATAG+CGG | 0.578172 | tig0018646:-189574 | None:intergenic |
| TTACGACTGTGATTCCTGCT+CGG | 0.579118 | tig0018646:-190927 | None:intergenic |
| AATTGCTTCTCTTCTTGCAG+AGG | 0.580389 | tig0018646:+190577 | Msa1368500:CDS |
| CGCCATATATTGCATCTATG+GGG | 0.580655 | tig0018646:+189463 | Msa1368500:CDS |
| TTGTGTTCCCTTATAGCGGA+AGG | 0.581605 | tig0018646:-189570 | None:intergenic |
| AAATGTATTGATCTTGGCGG+GGG | 0.586103 | tig0018646:+188847 | Msa1368500:CDS |
| CTTACTTCTGATGATCCCAA+AGG | 0.586453 | tig0018646:+187638 | Msa1368500:CDS |
| ATGGTAACTTCATAGCTCAC+AGG | 0.591489 | tig0018646:-191224 | None:intergenic |
| TACGATTCAACACTCCATTG+TGG | 0.592126 | tig0018646:+190089 | Msa1368500:CDS |
| AACAAAGATTGACAACTGCC+GGG | 0.592195 | tig0018646:+189919 | Msa1368500:CDS |
| AGGTCCCAATTGGAATTGGA+AGG | 0.593367 | tig0018646:+190603 | Msa1368500:CDS |
| CTACCTCTTTGGTAAGAGCA+AGG | 0.597638 | tig0018646:-189755 | None:intergenic |
| AATCACAGTCGTAATGGAGA+AGG | 0.598873 | tig0018646:+190936 | Msa1368500:CDS |
| ACGTGATCTTTCACCCACAA+TGG | 0.598941 | tig0018646:-190103 | None:intergenic |
| CTGGCGGCGACACAAACACC+AGG | 0.599567 | tig0018646:+188625 | Msa1368500:CDS |
| ACAATTTCGTGTGCTGCTGT+GGG | 0.600540 | tig0018646:+189021 | Msa1368500:CDS |
| AAGCTTCCATAACAGTTCCT+GGG | 0.601419 | tig0018646:+187547 | Msa1368500:CDS |
| CCTCTCCCTTGCAAGTGCAA+AGG | 0.601436 | tig0018646:+191249 | Msa1368500:three_prime_UTR |
| ATCAGATTACGGATTGGTCA+AGG | 0.601973 | tig0018646:+189204 | Msa1368500:CDS |
| GCCCTTAGTCTCATAAATGA+GGG | 0.605872 | tig0018646:-187843 | None:intergenic |
| AAGTATCATAGACCGATAGA+CGG | 0.608777 | tig0018646:+191357 | Msa1368500:three_prime_UTR |
| AAGCAGATAGACCAGAAGAT+GGG | 0.608981 | tig0018646:+190896 | Msa1368500:CDS |
| TGCCATTACCAAAATAGGTG+CGG | 0.611817 | tig0018646:-188261 | None:intergenic |
| GCCCTCATTTATGAGACTAA+GGG | 0.614539 | tig0018646:+187842 | Msa1368500:CDS |
| CTTTGGTGATGGATTTGTGG+AGG | 0.619513 | tig0018646:+188288 | Msa1368500:CDS |
| TAACCTTGCTCTTACCAAAG+AGG | 0.620952 | tig0018646:+189752 | Msa1368500:CDS |
| TTCTCTCAGGAAACATCCAT+GGG | 0.621640 | tig0018646:-190064 | None:intergenic |
| AAAATGTATTGATCTTGGCG+GGG | 0.624444 | tig0018646:+188846 | Msa1368500:CDS |
| CCGTGCATCAGATTACGGAT+TGG | 0.628119 | tig0018646:+189198 | Msa1368500:CDS |
| GCGTCGGAGGAAGCATTGCA+AGG | 0.628530 | tig0018646:+191028 | Msa1368500:three_prime_UTR |
| CCAATCCGTAATCTGATGCA+CGG | 0.631395 | tig0018646:-189198 | None:intergenic |
| GCCATATATTGCATCTATGG+GGG | 0.635669 | tig0018646:+189464 | Msa1368500:CDS |
| AGGGGCTGATCTGAAAGCAA+TGG | 0.635698 | tig0018646:+189270 | Msa1368500:CDS |
| GGTATGTTGAATAGAGAAAG+CGG | 0.636993 | tig0018646:+191100 | Msa1368500:three_prime_UTR |
| TTCATGAGCTGGTTTCTCTG+AGG | 0.638752 | tig0018646:+191006 | Msa1368500:three_prime_UTR |
| TTGGTCAAGGTAGACGAGAG+AGG | 0.645991 | tig0018646:+189217 | Msa1368500:CDS |
| AAATGGTAAATAGGTTCTGG+CGG | 0.656449 | tig0018646:+188609 | Msa1368500:intron |
| ATTCAACTGATCAGTGACCC+AGG | 0.657178 | tig0018646:-187564 | None:intergenic |
| TGGCGACAACCCAAGACGAG+AGG | 0.678555 | tig0018646:-189424 | None:intergenic |
| TTACAATGTATACCTGCACA+AGG | 0.713916 | tig0018646:-188898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTTATTAATTAT+AGG | + | tig0018646:187185-187204 | Msa1368500:five_prime_UTR | 0.0% |
| !!! | CTAATTATTTTTATATACTT+TGG | - | tig0018646:188008-188027 | None:intergenic | 10.0% |
| !! | ATATATAGTTATTGATAAAA+AGG | - | tig0018646:188370-188389 | None:intergenic | 10.0% |
| !! | ACAAAAGTAAAATAAATTAA+GGG | + | tig0018646:191196-191215 | Msa1368500:three_prime_UTR | 10.0% |
| !!! | TTTTTTAGAATTTGAAAAAG+GGG | - | tig0018646:187498-187517 | None:intergenic | 15.0% |
| !!! | CTTTTTTAGAATTTGAAAAA+GGG | - | tig0018646:187499-187518 | None:intergenic | 15.0% |
| !!! | ATTATTTTTTCTTTCAGAAT+TGG | - | tig0018646:187708-187727 | None:intergenic | 15.0% |
| !!! | ATATGAATTTTGATCATTAT+TGG | + | tig0018646:187726-187745 | Msa1368500:intron | 15.0% |
| !! | AAATGGTTTAAATAACAAAA+AGG | - | tig0018646:188734-188753 | None:intergenic | 15.0% |
| !!! | AATAAAATTTCTGATTTTTG+AGG | + | tig0018646:188770-188789 | Msa1368500:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGAACCA+GGG | - | tig0018646:190208-190227 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTGAACC+AGG | - | tig0018646:190209-190228 | None:intergenic | 15.0% |
| !!! | TTTTATATTTAGTTAGTAGT+AGG | - | tig0018646:190500-190519 | None:intergenic | 15.0% |
| !!! | AATATAAAATCATCTTTTAC+AGG | + | tig0018646:190511-190530 | Msa1368500:intron | 15.0% |
| !! | CACAAAAGTAAAATAAATTA+AGG | + | tig0018646:191195-191214 | Msa1368500:three_prime_UTR | 15.0% |
| !!! | TTAATTTAATTTTTAACTGG+TGG | + | tig0018646:191303-191322 | Msa1368500:three_prime_UTR | 15.0% |
| !!! | ATTTGTTTGTCTATAGTTTT+TGG | + | tig0018646:187211-187230 | Msa1368500:five_prime_UTR | 20.0% |
| !!! | CCTTTTTTAGAATTTGAAAA+AGG | - | tig0018646:187500-187519 | None:intergenic | 20.0% |
| !!! | CCTTTTTCAAATTCTAAAAA+AGG | + | tig0018646:187497-187516 | Msa1368500:CDS | 20.0% |
| !!! | TCTAAAAAAGGTTCTTTTTT+TGG | + | tig0018646:187509-187528 | Msa1368500:CDS | 20.0% |
| !!! | ACAATGGAAATTACATTTTT+TGG | - | tig0018646:187873-187892 | None:intergenic | 20.0% |
| !! | AAATGTAATTTCCATTGTAT+TGG | + | tig0018646:187875-187894 | Msa1368500:intron | 20.0% |
| !! | AATGTAATTTCCATTGTATT+GGG | + | tig0018646:187876-187895 | Msa1368500:intron | 20.0% |
| !! | AATAGAAACAAACTTGAAAT+TGG | - | tig0018646:188564-188583 | None:intergenic | 20.0% |
| !! | CTAATTAAAGTGAATCTAAA+TGG | + | tig0018646:188592-188611 | Msa1368500:intron | 20.0% |
| !!! | ATTTTCGACATTTATATTCT+TGG | - | tig0018646:188831-188850 | None:intergenic | 20.0% |
| !! | TGCAATGCATATATATTTAT+TGG | - | tig0018646:189615-189634 | None:intergenic | 20.0% |
| !! | GAATAATGAGTCTATAAATA+TGG | - | tig0018646:190161-190180 | None:intergenic | 20.0% |
| !!! | ATTCATTCTATTTTTACATG+TGG | - | tig0018646:191151-191170 | None:intergenic | 20.0% |
| !! | CAGTGATACAATAATTTAAA+AGG | - | tig0018646:191278-191297 | None:intergenic | 20.0% |
| !!! | AAGAAACTAAACTGTTTTTG+AGG | - | tig0018646:187429-187448 | None:intergenic | 25.0% |
| !!! | TTTTTTGGAGAAAGAATCAA+AGG | + | tig0018646:187524-187543 | Msa1368500:CDS | 25.0% |
| !! | TATGTGCCTACATTTTTATT+TGG | + | tig0018646:187772-187791 | Msa1368500:intron | 25.0% |
| !!! | ATGTGCCTACATTTTTATTT+GGG | + | tig0018646:187773-187792 | Msa1368500:intron | 25.0% |
| ! | CATATCCCAAATAAAAATGT+AGG | - | tig0018646:187781-187800 | None:intergenic | 25.0% |
| ! | AATAATTAGAGACTAAAGTG+TGG | + | tig0018646:188019-188038 | Msa1368500:intron | 25.0% |
| ! | ATATACTTAAGGGAATAAAC+TGG | + | tig0018646:188076-188095 | Msa1368500:intron | 25.0% |
| ! | AGTGAATCTAAATGGTAAAT+AGG | + | tig0018646:188600-188619 | Msa1368500:intron | 25.0% |
| ! | TTATAGAAAATACGGAGAAA+TGG | - | tig0018646:188751-188770 | None:intergenic | 25.0% |
| !! | AGTATTCAATTCTTTGTTGT+AGG | + | tig0018646:188802-188821 | Msa1368500:intron | 25.0% |
| !!! | ATTGTAATTGTTTTGTAGAG+TGG | + | tig0018646:188914-188933 | Msa1368500:intron | 25.0% |
| !! | AATTTTCAGAAAAACCGAAA+GGG | + | tig0018646:189251-189270 | Msa1368500:CDS | 25.0% |
| !!! | TTTTACTCAAGCTTTTGAAA+TGG | + | tig0018646:189508-189527 | Msa1368500:CDS | 25.0% |
| ! | ATGTATTTATCCATTTCAGA+AGG | + | tig0018646:189640-189659 | Msa1368500:intron | 25.0% |
| !! | ATTTTCTATCATTCAAGCTT+AGG | + | tig0018646:190328-190347 | Msa1368500:intron | 25.0% |
| ! | TACTTACAGTCCAATTTATA+AGG | + | tig0018646:190361-190380 | Msa1368500:intron | 25.0% |
| ! | TCAAGGTTAACCTTATAAAT+TGG | - | tig0018646:190374-190393 | None:intergenic | 25.0% |
| !! | GAGTAACACTTACTTAATTT+TGG | - | tig0018646:190633-190652 | None:intergenic | 25.0% |
| !! | AATTAAGTAAGTGTTACTCA+CGG | + | tig0018646:190634-190653 | Msa1368500:intron | 25.0% |
| !! | AATATCAGTTAGTAGTTTTC+TGG | + | tig0018646:190814-190833 | Msa1368500:intron | 25.0% |
| !! | ATAAACCATTCGAGTTTATA+AGG | - | tig0018646:190860-190879 | None:intergenic | 25.0% |
| ! | GTCATATAAATAATGGTTAG+TGG | + | tig0018646:190979-190998 | Msa1368500:exon | 25.0% |
| !!! | ATTCTATTTTTACATGTGGT+GGG | - | tig0018646:191147-191166 | None:intergenic | 25.0% |
| TGAAAGCAAAATGATTAGAG+TGG | - | tig0018646:187339-187358 | None:intergenic | 30.0% | |
| !!! | TAAACTGTTTTTGAGGTTGA+AGG | - | tig0018646:187422-187441 | None:intergenic | 30.0% |
| ! | TACTTTGGGAACTAAATTGA+TGG | - | tig0018646:187993-188012 | None:intergenic | 30.0% |
| AAACATAGGGAACAAATGTT+AGG | - | tig0018646:188111-188130 | None:intergenic | 30.0% | |
| !!! | TGTTCCCTATGTTTGTTTTA+AGG | + | tig0018646:188117-188136 | Msa1368500:intron | 30.0% |
| GGAACCTTAAAACAAACATA+GGG | - | tig0018646:188124-188143 | None:intergenic | 30.0% | |
| AGGAACCTTAAAACAAACAT+AGG | - | tig0018646:188125-188144 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTAAGGTTCCTGTT+GGG | + | tig0018646:188128-188147 | Msa1368500:intron | 30.0% |
| CTATTTATACAGTTGCTCAT+TGG | - | tig0018646:188178-188197 | None:intergenic | 30.0% | |
| ATGAGCAACTGTATAAATAG+TGG | + | tig0018646:188178-188197 | Msa1368500:intron | 30.0% | |
| ! | TTTCTTTGGAGGGATATTAT+TGG | - | tig0018646:188430-188449 | None:intergenic | 30.0% |
| !!! | TGAAGTTTTGTTTCTTTGGA+GGG | - | tig0018646:188440-188459 | None:intergenic | 30.0% |
| !!! | CTACTGAAGTTTTGTTTCTT+TGG | - | tig0018646:188444-188463 | None:intergenic | 30.0% |
| GAAACAAAACTTCAGTAGTT+TGG | + | tig0018646:188446-188465 | Msa1368500:intron | 30.0% | |
| TGAATAAAGAAGCTCTTTCT+TGG | + | tig0018646:188480-188499 | Msa1368500:intron | 30.0% | |
| GAGAAAAAAATACAATCCAC+CGG | + | tig0018646:188522-188541 | Msa1368500:intron | 30.0% | |
| TCTAAATGGTAAATAGGTTC+TGG | + | tig0018646:188606-188625 | Msa1368500:intron | 30.0% | |
| ACAATTTACCTGGATATTTG+AGG | + | tig0018646:188693-188712 | Msa1368500:CDS | 30.0% | |
| ! | TGTCGAAAATGTATTGATCT+TGG | + | tig0018646:188841-188860 | Msa1368500:CDS | 30.0% |
| !! | TTTATACCGAATGGATTACA+TGG | + | tig0018646:188874-188893 | Msa1368500:CDS | 30.0% |
| AGCACACGAAATTGTAATAT+CGG | - | tig0018646:189016-189035 | None:intergenic | 30.0% | |
| CAAGAAGAAACACATATAAC+AGG | - | tig0018646:189066-189085 | None:intergenic | 30.0% | |
| !! | CTTTCGGTTTTTCTGAAAAT+TGG | - | tig0018646:189252-189271 | None:intergenic | 30.0% |
| ! | CAATTTTCAGAAAAACCGAA+AGG | + | tig0018646:189250-189269 | Msa1368500:CDS | 30.0% |
| ! | ATTTTCAGAAAAACCGAAAG+GGG | + | tig0018646:189252-189271 | Msa1368500:CDS | 30.0% |
| ATAACAAGAAAGCAGAAAGA+AGG | - | tig0018646:189327-189346 | None:intergenic | 30.0% | |
| TATCCTACATCTAATGACTT+TGG | + | tig0018646:189534-189553 | Msa1368500:CDS | 30.0% | |
| TTATTGGAATTCCTCTTACT+TGG | - | tig0018646:189599-189618 | None:intergenic | 30.0% | |
| !!! | GAAAATTTGTGTTGTTTTGC+AGG | + | tig0018646:189671-189690 | Msa1368500:intron | 30.0% |
| !! | GTTTTGCAGGCATATTTTTT+CGG | + | tig0018646:189684-189703 | Msa1368500:intron | 30.0% |
| !!! | ATATTTTTTCGGAGACTACT+GGG | + | tig0018646:189695-189714 | Msa1368500:CDS | 30.0% |
| GGATCATAAAACTGAAACTT+CGG | - | tig0018646:189860-189879 | None:intergenic | 30.0% | |
| GAAAGATCACGTTTAGATTA+TGG | + | tig0018646:190114-190133 | Msa1368500:CDS | 30.0% | |
| GGTGTTCTAACATAGATATT+TGG | - | tig0018646:190183-190202 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGAACCAGGGT+TGG | - | tig0018646:190204-190223 | None:intergenic | 30.0% |
| GAACACACAATATTTGATCA+TGG | + | tig0018646:190257-190276 | Msa1368500:intron | 30.0% | |
| ACAAGTCACCATTTATTTGT+CGG | - | tig0018646:190429-190448 | None:intergenic | 30.0% | |
| ACCATTTAATAGAGTGTGTT+GGG | - | tig0018646:190477-190496 | None:intergenic | 30.0% | |
| TATTCCTTCCAATTCCAATT+GGG | - | tig0018646:190610-190629 | None:intergenic | 30.0% | |
| !! | TTGCTTGTTATCTTTGTCAA+AGG | + | tig0018646:190722-190741 | Msa1368500:intron | 30.0% |
| ATTGACAAGAATGCAAAGAT+TGG | + | tig0018646:190754-190773 | Msa1368500:CDS | 30.0% | |
| TTGACAAGAATGCAAAGATT+GGG | + | tig0018646:190755-190774 | Msa1368500:CDS | 30.0% | |
| TGGAGCTGTCATATAAATAA+TGG | + | tig0018646:190972-190991 | Msa1368500:exon | 30.0% | |
| !!! | CATTCTATTTTTACATGTGG+TGG | - | tig0018646:191148-191167 | None:intergenic | 30.0% |
| ! | GAAATCTTGTGTTGGGATTT+TGG | - | tig0018646:187260-187279 | None:intergenic | 35.0% |
| TTCACGAGAAATCTTGTGTT+GGG | - | tig0018646:187267-187286 | None:intergenic | 35.0% | |
| TTTCACGAGAAATCTTGTGT+TGG | - | tig0018646:187268-187287 | None:intergenic | 35.0% | |
| ACAAGATTTCTCGTGAAAAG+AGG | + | tig0018646:187270-187289 | Msa1368500:five_prime_UTR | 35.0% | |
| ! | AATGATTAGAGTGGTGATGA+AGG | - | tig0018646:187330-187349 | None:intergenic | 35.0% |
| !! | GAATTTGAAAAAGGGGTGTT+GGG | - | tig0018646:187491-187510 | None:intergenic | 35.0% |
| ! | AGAATTTGAAAAAGGGGTGT+TGG | - | tig0018646:187492-187511 | None:intergenic | 35.0% |
| GAATGAAATTGAGCTTACCA+AGG | - | tig0018646:187666-187685 | None:intergenic | 35.0% | |
| GGTAAGCTCAATTTCATTCT+AGG | + | tig0018646:187667-187686 | Msa1368500:intron | 35.0% | |
| GTAATTTCCATTGTATTGGG+AGG | + | tig0018646:187879-187898 | Msa1368500:intron | 35.0% | |
| TTAAGGGAATAAACTGGAGA+AGG | + | tig0018646:188082-188101 | Msa1368500:intron | 35.0% | |
| !!! | GTTTGTTTTAAGGTTCCTGT+TGG | + | tig0018646:188127-188146 | Msa1368500:intron | 35.0% |
| !!! | TTGTTTTAAGGTTCCTGTTG+GGG | + | tig0018646:188129-188148 | Msa1368500:intron | 35.0% |
| GTTGATGCCATTACCAAAAT+AGG | - | tig0018646:188269-188288 | None:intergenic | 35.0% | |
| !! | TTTGGTAATGGCATCAACTT+TGG | + | tig0018646:188271-188290 | Msa1368500:CDS | 35.0% |
| ATTCACCATCAGTAGATGTA+TGG | + | tig0018646:188326-188345 | Msa1368500:intron | 35.0% | |
| ACTTTCCATACATCTACTGA+TGG | - | tig0018646:188334-188353 | None:intergenic | 35.0% | |
| !!! | CTGAAGTTTTGTTTCTTTGG+AGG | - | tig0018646:188441-188460 | None:intergenic | 35.0% |
| TAAAGAAGCTCTTTCTTGGT+TGG | + | tig0018646:188484-188503 | Msa1368500:intron | 35.0% | |
| ! | AAATGGTAAATAGGTTCTGG+CGG | + | tig0018646:188609-188628 | Msa1368500:intron | 35.0% |
| TTTAGCTACCTCAAATATCC+AGG | - | tig0018646:188704-188723 | None:intergenic | 35.0% | |
| ! | CGAAAATGTATTGATCTTGG+CGG | + | tig0018646:188844-188863 | Msa1368500:CDS | 35.0% |
| ! | GAAAATGTATTGATCTTGGC+GGG | + | tig0018646:188845-188864 | Msa1368500:CDS | 35.0% |
| ! | AAAATGTATTGATCTTGGCG+GGG | + | tig0018646:188846-188865 | Msa1368500:CDS | 35.0% |
| TTACAATGTATACCTGCACA+AGG | - | tig0018646:188901-188920 | None:intergenic | 35.0% | |
| ! | AGAAAGAAGGTGCAAACATT+GGG | - | tig0018646:189314-189333 | None:intergenic | 35.0% |
| ! | CTTTCTGCTTTCTTGTTATC+TGG | + | tig0018646:189328-189347 | Msa1368500:intron | 35.0% |
| ! | GAGGATGGTCAATTCATTTT+TGG | - | tig0018646:189385-189404 | None:intergenic | 35.0% |
| ! | TATCTACTTGCTGCAAAATG+AGG | - | tig0018646:189404-189423 | None:intergenic | 35.0% |
| TCGCCATATATTGCATCTAT+GGG | + | tig0018646:189462-189481 | Msa1368500:CDS | 35.0% | |
| GATCCAAAGTCATTAGATGT+AGG | - | tig0018646:189540-189559 | None:intergenic | 35.0% | |
| ! | TATAGCGGAAGGAATGATTT+CGG | - | tig0018646:189562-189581 | None:intergenic | 35.0% |
| AAATCATTCCTTCCGCTATA+AGG | + | tig0018646:189562-189581 | Msa1368500:CDS | 35.0% | |
| AATCATTCCTTCCGCTATAA+GGG | + | tig0018646:189563-189582 | Msa1368500:CDS | 35.0% | |
| !!! | CATATTTTTTCGGAGACTAC+TGG | + | tig0018646:189694-189713 | Msa1368500:CDS | 35.0% |
| AATCCAGGAGATGTGAAAAT+GGG | - | tig0018646:189890-189909 | None:intergenic | 35.0% | |
| GATAGATAAATTGTCGTACC+CGG | - | tig0018646:189940-189959 | None:intergenic | 35.0% | |
| !!! | GTCATGTGTTGCTTTGTTTT+TGG | + | tig0018646:190016-190035 | Msa1368500:intron | 35.0% |
| !!! | ATGTGTTGCTTTGTTTTTGG+TGG | + | tig0018646:190019-190038 | Msa1368500:intron | 35.0% |
| ACCCAACACACTCTATTAAA+TGG | + | tig0018646:190473-190492 | Msa1368500:intron | 35.0% | |
| GACCATTTAATAGAGTGTGT+TGG | - | tig0018646:190478-190497 | None:intergenic | 35.0% | |
| TTTACAGGACACTGTAATGA+TGG | + | tig0018646:190526-190545 | Msa1368500:intron | 35.0% | |
| TTACAGGACACTGTAATGAT+GGG | + | tig0018646:190527-190546 | Msa1368500:intron | 35.0% | |
| AAGAGAAGCAATTTCGGATT+CGG | - | tig0018646:190570-190589 | None:intergenic | 35.0% | |
| TGCAAGAAGAGAAGCAATTT+CGG | - | tig0018646:190576-190595 | None:intergenic | 35.0% | |
| GTATTCCTTCCAATTCCAAT+TGG | - | tig0018646:190611-190630 | None:intergenic | 35.0% | |
| !! | AAGGATGCACAAAAGTATTG+CGG | - | tig0018646:190841-190860 | None:intergenic | 35.0% |
| TGCATCCTTATAAACTCGAA+TGG | + | tig0018646:190852-190871 | Msa1368500:intron | 35.0% | |
| AACTCGAATGGTTTATCTGT+AGG | + | tig0018646:190864-190883 | Msa1368500:intron | 35.0% | |
| ACTCGAATGGTTTATCTGTA+GGG | + | tig0018646:190865-190884 | Msa1368500:intron | 35.0% | |
| GGTATGTTGAATAGAGAAAG+CGG | + | tig0018646:191100-191119 | Msa1368500:three_prime_UTR | 35.0% | |
| !! | TTTTAACTGGTGGTGTGATA+AGG | + | tig0018646:191313-191332 | Msa1368500:three_prime_UTR | 35.0% |
| AAGTATCATAGACCGATAGA+CGG | + | tig0018646:191357-191376 | Msa1368500:three_prime_UTR | 35.0% | |
| ATTTCTCGTGAAAAGAGGTC+TGG | + | tig0018646:187275-187294 | Msa1368500:five_prime_UTR | 40.0% | |
| ! | TCTGGCTCATACTTCCATAA+AGG | + | tig0018646:187293-187312 | Msa1368500:five_prime_UTR | 40.0% |
| AGGAAAGGAAGTTGCCTTTA+TGG | - | tig0018646:187310-187329 | None:intergenic | 40.0% | |
| ! | TTAGAGTGGTGATGAAGGAA+AGG | - | tig0018646:187325-187344 | None:intergenic | 40.0% |
| GTTTCTTGAGATCACTGCAA+TGG | + | tig0018646:187442-187461 | Msa1368500:exon | 40.0% | |
| !! | AAAAGGGGTGTTGGGTTTAA+CGG | - | tig0018646:187483-187502 | None:intergenic | 40.0% |
| AAGCTTCCATAACAGTTCCT+GGG | + | tig0018646:187547-187566 | Msa1368500:CDS | 40.0% | |
| CAGCATGTTTGATCTTCTTC+TGG | - | tig0018646:187604-187623 | None:intergenic | 40.0% | |
| CTTACTTCTGATGATCCCAA+AGG | + | tig0018646:187638-187657 | Msa1368500:CDS | 40.0% | |
| TGCCCTCATTTATGAGACTA+AGG | + | tig0018646:187841-187860 | Msa1368500:CDS | 40.0% | |
| GCCCTCATTTATGAGACTAA+GGG | + | tig0018646:187842-187861 | Msa1368500:CDS | 40.0% | |
| GCCCTTAGTCTCATAAATGA+GGG | - | tig0018646:187846-187865 | None:intergenic | 40.0% | |
| AGCCCTTAGTCTCATAAATG+AGG | - | tig0018646:187847-187866 | None:intergenic | 40.0% | |
| ATTTCCATTGTATTGGGAGG+AGG | + | tig0018646:187882-187901 | Msa1368500:intron | 40.0% | |
| ATCATGATAGTCACTTACCG+CGG | - | tig0018646:187952-187971 | None:intergenic | 40.0% | |
| !!! | TGTTTTAAGGTTCCTGTTGG+GGG | + | tig0018646:188130-188149 | Msa1368500:intron | 40.0% |
| TGCCATTACCAAAATAGGTG+CGG | - | tig0018646:188264-188283 | None:intergenic | 40.0% | |
| AATGGCATCAACTTTGGTGA+TGG | + | tig0018646:188277-188296 | Msa1368500:CDS | 40.0% | |
| !! | CAACTTTGGTGATGGATTTG+TGG | + | tig0018646:188285-188304 | Msa1368500:CDS | 40.0% |
| ! | CTACTGATGGTGAATTGTGA+TGG | - | tig0018646:188321-188340 | None:intergenic | 40.0% |
| TGGTCAACAAGAATCTCTTC+CGG | - | tig0018646:188544-188563 | None:intergenic | 40.0% | |
| ATGCTGTGAGACAATTTACC+TGG | + | tig0018646:188683-188702 | Msa1368500:CDS | 40.0% | |
| ! | AAATGTATTGATCTTGGCGG+GGG | + | tig0018646:188847-188866 | Msa1368500:CDS | 40.0% |
| CAAGGTCCATGTAATCCATT+CGG | - | tig0018646:188883-188902 | None:intergenic | 40.0% | |
| !! | ATCAGATTACGGATTGGTCA+AGG | + | tig0018646:189204-189223 | Msa1368500:CDS | 40.0% |
| ! | CAGAAAGAAGGTGCAAACAT+TGG | - | tig0018646:189315-189334 | None:intergenic | 40.0% |
| ! | TACTTGCTGCAAAATGAGGA+TGG | - | tig0018646:189400-189419 | None:intergenic | 40.0% |
| AAGTAGATACCTCTCGTCTT+GGG | + | tig0018646:189415-189434 | Msa1368500:CDS | 40.0% | |
| GCAATATATGGCGAGTTCAA+TGG | - | tig0018646:189456-189475 | None:intergenic | 40.0% | |
| CTCGCCATATATTGCATCTA+TGG | + | tig0018646:189461-189480 | Msa1368500:CDS | 40.0% | |
| CGCCATATATTGCATCTATG+GGG | + | tig0018646:189463-189482 | Msa1368500:CDS | 40.0% | |
| GCCATATATTGCATCTATGG+GGG | + | tig0018646:189464-189483 | Msa1368500:CDS | 40.0% | |
| ACCCCCATAGATGCAATATA+TGG | - | tig0018646:189468-189487 | None:intergenic | 40.0% | |
| GACATTGTGTTCCCTTATAG+CGG | - | tig0018646:189577-189596 | None:intergenic | 40.0% | |
| GAACACAATGTCCAAGTAAG+AGG | + | tig0018646:189585-189604 | Msa1368500:intron | 40.0% | |
| ! | TCTCATTGCTCCTTCTGAAA+TGG | - | tig0018646:189653-189672 | None:intergenic | 40.0% |
| AGCAAGGTTAGCATCGTAAA+AGG | - | tig0018646:189742-189761 | None:intergenic | 40.0% | |
| TAACCTTGCTCTTACCAAAG+AGG | + | tig0018646:189752-189771 | Msa1368500:CDS | 40.0% | |
| ATTTCTTGCACCTACCTCTT+TGG | - | tig0018646:189769-189788 | None:intergenic | 40.0% | |
| AGGTAGGTGCAAGAAATTGT+CGG | + | tig0018646:189772-189791 | Msa1368500:intron | 40.0% | |
| TCTGCATGAGAGTAGCATAA+AGG | - | tig0018646:189835-189854 | None:intergenic | 40.0% | |
| GATGTGAAAATGGGTGTCTT+GGG | - | tig0018646:189881-189900 | None:intergenic | 40.0% | |
| AGATGTGAAAATGGGTGTCT+TGG | - | tig0018646:189882-189901 | None:intergenic | 40.0% | |
| GAATCCAGGAGATGTGAAAA+TGG | - | tig0018646:189891-189910 | None:intergenic | 40.0% | |
| !! | TGTCAATCTTTGTTGGTGGT+AGG | - | tig0018646:189913-189932 | None:intergenic | 40.0% |
| CAGTTGTCAATCTTTGTTGG+TGG | - | tig0018646:189917-189936 | None:intergenic | 40.0% | |
| CAACAAAGATTGACAACTGC+CGG | + | tig0018646:189918-189937 | Msa1368500:CDS | 40.0% | |
| AACAAAGATTGACAACTGCC+GGG | + | tig0018646:189919-189938 | Msa1368500:CDS | 40.0% | |
| !!! | GTTGCTTTGTTTTTGGTGGT+AGG | + | tig0018646:190023-190042 | Msa1368500:intron | 40.0% |
| !!! | TTGTTTTTGGTGGTAGGTTG+TGG | + | tig0018646:190029-190048 | Msa1368500:intron | 40.0% |
| GAAACATCCATGGGAGATAA+TGG | - | tig0018646:190058-190077 | None:intergenic | 40.0% | |
| TTCTCTCAGGAAACATCCAT+GGG | - | tig0018646:190067-190086 | None:intergenic | 40.0% | |
| ATTCTCTCAGGAAACATCCA+TGG | - | tig0018646:190068-190087 | None:intergenic | 40.0% | |
| GTTGAATCGTACATTCTCTC+AGG | - | tig0018646:190080-190099 | None:intergenic | 40.0% | |
| TACGATTCAACACTCCATTG+TGG | + | tig0018646:190089-190108 | Msa1368500:CDS | 40.0% | |
| ACGATTCAACACTCCATTGT+GGG | + | tig0018646:190090-190109 | Msa1368500:CDS | 40.0% | |
| ! | AAGCAATTTCGGATTCGGTT+TGG | - | tig0018646:190565-190584 | None:intergenic | 40.0% |
| AATTGCTTCTCTTCTTGCAG+AGG | + | tig0018646:190577-190596 | Msa1368500:CDS | 40.0% | |
| ATTGCTTCTCTTCTTGCAGA+GGG | + | tig0018646:190578-190597 | Msa1368500:CDS | 40.0% | |
| AAGCAGATAGACCAGAAGAT+GGG | + | tig0018646:190896-190915 | Msa1368500:CDS | 40.0% | |
| ! | AATCACAGTCGTAATGGAGA+AGG | + | tig0018646:190936-190955 | Msa1368500:CDS | 40.0% |
| ! | TTAGTGGCTATTTCATGAGC+TGG | + | tig0018646:190995-191014 | Msa1368500:three_prime_UTR | 40.0% |
| GTATGGTGACTGTTGCAAAA+TGG | + | tig0018646:191079-191098 | Msa1368500:three_prime_UTR | 40.0% | |
| GAAAGCGGCATGTGTAAAAT+AGG | + | tig0018646:191115-191134 | Msa1368500:three_prime_UTR | 40.0% | |
| ATGGTAACTTCATAGCTCAC+AGG | - | tig0018646:191227-191246 | None:intergenic | 40.0% | |
| TCTATGATACTTGGAGCAAC+AGG | - | tig0018646:191349-191368 | None:intergenic | 40.0% | |
| GTCTATCGGTCTATGATACT+TGG | - | tig0018646:191358-191377 | None:intergenic | 40.0% | |
| AGTATCATAGACCGATAGAC+GGG | + | tig0018646:191358-191377 | Msa1368500:three_prime_UTR | 40.0% | |
| GTAATACTATGCCCGTCTAT+CGG | - | tig0018646:191372-191391 | None:intergenic | 40.0% | |
| GAAGCTTCCATAACAGTTCC+TGG | + | tig0018646:187546-187565 | Msa1368500:CDS | 45.0% | |
| ATTCAACTGATCAGTGACCC+AGG | - | tig0018646:187567-187586 | None:intergenic | 45.0% | |
| TGATGATCCCAAAGGTTCCT+TGG | + | tig0018646:187646-187665 | Msa1368500:CDS | 45.0% | |
| GAGCTTACCAAGGAACCTTT+GGG | - | tig0018646:187656-187675 | None:intergenic | 45.0% | |
| TGAGCTTACCAAGGAACCTT+TGG | - | tig0018646:187657-187676 | None:intergenic | 45.0% | |
| AGAGGATATAGATGTGTCCC+TGG | - | tig0018646:187909-187928 | None:intergenic | 45.0% | |
| TCATGATAGTCACTTACCGC+GGG | - | tig0018646:187951-187970 | None:intergenic | 45.0% | |
| TCAATTCTGCTTCCCTCAAC+CGG | + | tig0018646:188230-188249 | Msa1368500:CDS | 45.0% | |
| GCCATTACCAAAATAGGTGC+GGG | - | tig0018646:188263-188282 | None:intergenic | 45.0% | |
| !! | CTTTGGTGATGGATTTGTGG+AGG | + | tig0018646:188288-188307 | Msa1368500:CDS | 45.0% |
| TCAACAAGAATCTCTTCCGG+TGG | - | tig0018646:188541-188560 | None:intergenic | 45.0% | |
| GCGGGAAATAAGTGGTTTCA+AGG | + | tig0018646:188652-188671 | Msa1368500:CDS | 45.0% | |
| GGGGGATCATTTATACCGAA+TGG | + | tig0018646:188865-188884 | Msa1368500:CDS | 45.0% | |
| ! | TACAATTTCGTGTGCTGCTG+TGG | + | tig0018646:189020-189039 | Msa1368500:CDS | 45.0% |
| ! | ACAATTTCGTGTGCTGCTGT+GGG | + | tig0018646:189021-189040 | Msa1368500:CDS | 45.0% |
| TTCAGCCGTGCATCAGATTA+CGG | + | tig0018646:189193-189212 | Msa1368500:intron | 45.0% | |
| CCAATCCGTAATCTGATGCA+CGG | - | tig0018646:189201-189220 | None:intergenic | 45.0% | |
| CAAGTAGATACCTCTCGTCT+TGG | + | tig0018646:189414-189433 | Msa1368500:CDS | 45.0% | |
| ! | TTGTGTTCCCTTATAGCGGA+AGG | - | tig0018646:189573-189592 | None:intergenic | 45.0% |
| GGAGACTACTGGGAAGATAT+TGG | + | tig0018646:189705-189724 | Msa1368500:CDS | 45.0% | |
| CTACCTCTTTGGTAAGAGCA+AGG | - | tig0018646:189758-189777 | None:intergenic | 45.0% | |
| CTTGCTCTTACCAAAGAGGT+AGG | + | tig0018646:189756-189775 | Msa1368500:intron | 45.0% | |
| ! | ACACCCATTTTCACATCTCC+TGG | + | tig0018646:189884-189903 | Msa1368500:CDS | 45.0% |
| !! | TTTGTTGGTGGTAGGAATCC+AGG | - | tig0018646:189905-189924 | None:intergenic | 45.0% |
| CGGCAGTTGTCAATCTTTGT+TGG | - | tig0018646:189920-189939 | None:intergenic | 45.0% | |
| ACGTGATCTTTCACCCACAA+TGG | - | tig0018646:190106-190125 | None:intergenic | 45.0% | |
| ! | AGATTATGGCGTTGAGCTTC+AGG | + | tig0018646:190128-190147 | Msa1368500:intron | 45.0% |
| CTATGTTAGAACACCAACCC+TGG | + | tig0018646:190188-190207 | Msa1368500:intron | 45.0% | |
| GTCAGAGACGTAGGAACAAT+TGG | - | tig0018646:190290-190309 | None:intergenic | 45.0% | |
| !! | CACTCTAAAGTCAGAGACGT+AGG | - | tig0018646:190299-190318 | None:intergenic | 45.0% |
| ! | CTACGTCTCTGACTTTAGAG+TGG | + | tig0018646:190297-190316 | Msa1368500:intron | 45.0% |
| ACCATTTATTTGTCGGCCTG+CGG | - | tig0018646:190422-190441 | None:intergenic | 45.0% | |
| TTCTCTTCTTGCAGAGGGAA+AGG | + | tig0018646:190583-190602 | Msa1368500:CDS | 45.0% | |
| GGAAAGGTCCCAATTGGAAT+TGG | + | tig0018646:190599-190618 | Msa1368500:CDS | 45.0% | |
| AGGTCCCAATTGGAATTGGA+AGG | + | tig0018646:190603-190622 | Msa1368500:CDS | 45.0% | |
| GAAGCAGATAGACCAGAAGA+TGG | + | tig0018646:190895-190914 | Msa1368500:CDS | 45.0% | |
| TTACGACTGTGATTCCTGCT+CGG | - | tig0018646:190930-190949 | None:intergenic | 45.0% | |
| AGCAGGAATCACAGTCGTAA+TGG | + | tig0018646:190930-190949 | Msa1368500:CDS | 45.0% | |
| GAGAAGGCAACGATAGAAGA+TGG | + | tig0018646:190952-190971 | Msa1368500:CDS | 45.0% | |
| ! | TTCATGAGCTGGTTTCTCTG+AGG | + | tig0018646:191006-191025 | Msa1368500:three_prime_UTR | 45.0% |
| !!! | TAATTATTTTTATATACTTT+GGG | - | tig0018646:188007-188026 | None:intergenic | 5.0% |
| !! | TTATTAAAATTATATACTTA+AGG | + | tig0018646:188065-188084 | Msa1368500:intron | 5.0% |
| !! | TATTAAAATTATATACTTAA+GGG | + | tig0018646:188066-188085 | Msa1368500:intron | 5.0% |
| !!! | AATTTTATTTATAGAAAATA+CGG | - | tig0018646:188759-188778 | None:intergenic | 5.0% |
| !!! | TTATTAATTTAATTTTTAAC+TGG | + | tig0018646:191300-191319 | Msa1368500:three_prime_UTR | 5.0% |
| GAGATCACTGCAATGGCTTC+TGG | + | tig0018646:187449-187468 | Msa1368500:exon | 50.0% | |
| CAGTGACCCAGGAACTGTTA+TGG | - | tig0018646:187556-187575 | None:intergenic | 50.0% | |
| TGGTCCTCCTCCCAATACAA+TGG | - | tig0018646:187889-187908 | None:intergenic | 50.0% | |
| ATTGTATTGGGAGGAGGACC+AGG | + | tig0018646:187888-187907 | Msa1368500:intron | 50.0% | |
| TTGTATTGGGAGGAGGACCA+GGG | + | tig0018646:187889-187908 | Msa1368500:intron | 50.0% | |
| TTCCTGTTGGGGGATGCTAT+AGG | + | tig0018646:188140-188159 | Msa1368500:intron | 50.0% | |
| ! | CATATCGCCCGCACCTATTT+TGG | + | tig0018646:188253-188272 | Msa1368500:CDS | 50.0% |
| !!! | GCCCGCACCTATTTTGGTAA+TGG | + | tig0018646:188259-188278 | Msa1368500:CDS | 50.0% |
| GACACAAACACCAGGAGAAG+CGG | + | tig0018646:188633-188652 | Msa1368500:CDS | 50.0% | |
| ACACAAACACCAGGAGAAGC+GGG | + | tig0018646:188634-188653 | Msa1368500:CDS | 50.0% | |
| CACTTATTTCCCGCTTCTCC+TGG | - | tig0018646:188646-188665 | None:intergenic | 50.0% | |
| CAGGAGAAGCGGGAAATAAG+TGG | + | tig0018646:188644-188663 | Msa1368500:CDS | 50.0% | |
| GGATTACATGGACCTTGTGC+AGG | + | tig0018646:188886-188905 | Msa1368500:CDS | 50.0% | |
| CCGTGCATCAGATTACGGAT+TGG | + | tig0018646:189198-189217 | Msa1368500:CDS | 50.0% | |
| TTGGTCAAGGTAGACGAGAG+AGG | + | tig0018646:189217-189236 | Msa1368500:CDS | 50.0% | |
| GCTTTCAGATCAGCCCCTTT+CGG | - | tig0018646:189268-189287 | None:intergenic | 50.0% | |
| AGGGGCTGATCTGAAAGCAA+TGG | + | tig0018646:189270-189289 | Msa1368500:CDS | 50.0% | |
| GGCGAGTTCAATGGATCTTG+TGG | - | tig0018646:189447-189466 | None:intergenic | 50.0% | |
| GTGGATGCCATTATCTCCCA+TGG | + | tig0018646:190048-190067 | Msa1368500:CDS | 50.0% | |
| TTAACCTTGAGCTGTACCGC+AGG | + | tig0018646:190384-190403 | Msa1368500:intron | 50.0% | |
| ATTTATTTGTCGGCCTGCGG+GGG | - | tig0018646:190419-190438 | None:intergenic | 50.0% | |
| CATTTATTTGTCGGCCTGCG+GGG | - | tig0018646:190420-190439 | None:intergenic | 50.0% | |
| CCATTTATTTGTCGGCCTGC+GGG | - | tig0018646:190421-190440 | None:intergenic | 50.0% | |
| CGGATGTAGAACCCATCTTC+TGG | - | tig0018646:190910-190929 | None:intergenic | 50.0% | |
| CACTTGCAAGGGAGAGGATA+TGG | - | tig0018646:191246-191265 | None:intergenic | 50.0% | |
| GGTGTCCTTTGCACTTGCAA+GGG | - | tig0018646:191257-191276 | None:intergenic | 50.0% | |
| AGGTGTCCTTTGCACTTGCA+AGG | - | tig0018646:191258-191277 | None:intergenic | 50.0% | |
| CGGGCATAGTATTACTCAGC+AGG | + | tig0018646:191377-191396 | Msa1368500:three_prime_UTR | 50.0% | |
| ! | GTTGCAGCTCGTTTGGTGAG+AGG | - | tig0018646:187927-187946 | None:intergenic | 55.0% |
| AGCCTATAGCATCCCCCAAC+AGG | - | tig0018646:188145-188164 | None:intergenic | 55.0% | |
| AATAGGTGCGGGCGATATGC+CGG | - | tig0018646:188252-188271 | None:intergenic | 55.0% | |
| CTGATGCACGGCTGAAAAGC+AGG | - | tig0018646:189189-189208 | None:intergenic | 55.0% | |
| CCCGCAGGCCGACAAATAAA+TGG | + | tig0018646:190418-190437 | Msa1368500:intron | 55.0% | |
| GCAGAGGGAAAGGTCCCAAT+TGG | + | tig0018646:190593-190612 | Msa1368500:CDS | 55.0% | |
| ! | GATGGGTTCTACATCCGAGC+AGG | + | tig0018646:190913-190932 | Msa1368500:CDS | 55.0% |
| !! | AGCTGGTTTCTCTGAGGCGT+CGG | + | tig0018646:191012-191031 | Msa1368500:three_prime_UTR | 55.0% |
| AACACTCCCTCCCGCATCTT+TGG | + | tig0018646:191051-191070 | Msa1368500:three_prime_UTR | 55.0% | |
| ACACTCCCTCCCGCATCTTT+GGG | + | tig0018646:191052-191071 | Msa1368500:three_prime_UTR | 55.0% | |
| CATACCTCCCCCAAAGATGC+GGG | - | tig0018646:191064-191083 | None:intergenic | 55.0% | |
| CCATACCTCCCCCAAAGATG+CGG | - | tig0018646:191065-191084 | None:intergenic | 55.0% | |
| CCTTTGCACTTGCAAGGGAG+AGG | - | tig0018646:191252-191271 | None:intergenic | 55.0% | |
| CCTCTCCCTTGCAAGTGCAA+AGG | + | tig0018646:191249-191268 | Msa1368500:three_prime_UTR | 55.0% | |
| CAAACGAGCTGCAACACCCG+CGG | + | tig0018646:187932-187951 | Msa1368500:intron | 60.0% | |
| TGGCGACAACCCAAGACGAG+AGG | - | tig0018646:189427-189446 | None:intergenic | 60.0% | |
| ACCTTGAGCTGTACCGCAGG+AGG | + | tig0018646:190387-190406 | Msa1368500:intron | 60.0% | |
| CCTTGAGCTGTACCGCAGGA+GGG | + | tig0018646:190388-190407 | Msa1368500:intron | 60.0% | |
| !! | TGGTTTCTCTGAGGCGTCGG+AGG | + | tig0018646:191015-191034 | Msa1368500:three_prime_UTR | 60.0% |
| !! | GCGTCGGAGGAAGCATTGCA+AGG | + | tig0018646:191028-191047 | Msa1368500:three_prime_UTR | 60.0% |
| CACTCCCTCCCGCATCTTTG+GGG | + | tig0018646:191053-191072 | Msa1368500:three_prime_UTR | 60.0% | |
| ACTCCCTCCCGCATCTTTGG+GGG | + | tig0018646:191054-191073 | Msa1368500:three_prime_UTR | 60.0% | |
| ! | CCGCATCTTTGGGGGAGGTA+TGG | + | tig0018646:191062-191081 | Msa1368500:three_prime_UTR | 60.0% |
| ! | CGCGGGTGTTGCAGCTCGTT+TGG | - | tig0018646:187934-187953 | None:intergenic | 65.0% |
| ! | GCGGGCGATATGCCGGTTGA+GGG | - | tig0018646:188245-188264 | None:intergenic | 65.0% |
| ! | TGCGGGCGATATGCCGGTTG+AGG | - | tig0018646:188246-188265 | None:intergenic | 65.0% |
| CTGGCGGCGACACAAACACC+AGG | + | tig0018646:188625-188644 | Msa1368500:CDS | 65.0% | |
| ! | CGTGTGCTGCTGTGGGTGAC+AGG | + | tig0018646:189028-189047 | Msa1368500:CDS | 65.0% |
| CCCTCCTGCGGTACAGCTCA+AGG | - | tig0018646:190391-190410 | None:intergenic | 65.0% | |
| CCTCCCCCAAAGATGCGGGA+GGG | - | tig0018646:191060-191079 | None:intergenic | 65.0% | |
| ACCTCCCCCAAAGATGCGGG+AGG | - | tig0018646:191061-191080 | None:intergenic | 65.0% | |
| ! | CCCTCCCGCATCTTTGGGGG+AGG | + | tig0018646:191057-191076 | Msa1368500:three_prime_UTR | 70.0% |
| ! | GCGGGGGACGAGCCCTCCTG+CGG | - | tig0018646:190403-190422 | None:intergenic | 80.0% |
| ! | CAGGAGGGCTCGTCCCCCGC+AGG | + | tig0018646:190403-190422 | Msa1368500:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018646 | gene | 187171 | 191423 | 187171 | ID=Msa1368500;Name=Msa1368500 |
| tig0018646 | mRNA | 187171 | 191423 | 187171 | ID=Msa1368500-mRNA-1;Parent=Msa1368500;Name=Msa1368500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=290|0.84|0.78|1|0.84|0.85|14|436|459 |
| tig0018646 | exon | 187171 | 187667 | 187171 | ID=Msa1368500-mRNA-1:exon:462;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 187831 | 187878 | 187831 | ID=Msa1368500-mRNA-1:exon:463;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 188229 | 188309 | 188229 | ID=Msa1368500-mRNA-1:exon:464;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 188622 | 188714 | 188622 | ID=Msa1368500-mRNA-1:exon:465;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 188824 | 188907 | 188824 | ID=Msa1368500-mRNA-1:exon:466;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 188994 | 189049 | 188994 | ID=Msa1368500-mRNA-1:exon:467;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 189198 | 189291 | 189198 | ID=Msa1368500-mRNA-1:exon:468;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 189414 | 189599 | 189414 | ID=Msa1368500-mRNA-1:exon:469;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 189693 | 189773 | 189693 | ID=Msa1368500-mRNA-1:exon:470;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 189854 | 189940 | 189854 | ID=Msa1368500-mRNA-1:exon:471;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 190045 | 190137 | 190045 | ID=Msa1368500-mRNA-1:exon:472;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 190533 | 190639 | 190533 | ID=Msa1368500-mRNA-1:exon:473;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 190744 | 190804 | 190744 | ID=Msa1368500-mRNA-1:exon:474;Parent=Msa1368500-mRNA-1 |
| tig0018646 | exon | 190886 | 191423 | 190886 | ID=Msa1368500-mRNA-1:exon:475;Parent=Msa1368500-mRNA-1 |
| tig0018646 | five_prime_UTR | 187171 | 187460 | 187171 | ID=Msa1368500-mRNA-1:five_prime_utr;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 187461 | 187667 | 187461 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 187831 | 187878 | 187831 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 188229 | 188309 | 188229 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 188622 | 188714 | 188622 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 188824 | 188907 | 188824 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 188994 | 189049 | 188994 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 189198 | 189291 | 189198 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 189414 | 189599 | 189414 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 189693 | 189773 | 189693 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 189854 | 189940 | 189854 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 190045 | 190137 | 190045 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 190533 | 190639 | 190533 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 190744 | 190804 | 190744 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | CDS | 190886 | 190987 | 190886 | ID=Msa1368500-mRNA-1:cds;Parent=Msa1368500-mRNA-1 |
| tig0018646 | three_prime_UTR | 190988 | 191423 | 190988 | ID=Msa1368500-mRNA-1:three_prime_utr;Parent=Msa1368500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
