Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317160 | XP_003594276.1 | 99.005 | 201 | 2 | 0 | 1 | 201 | 1 | 201 | 1.09e-140 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317160 | sp|A7R385|CSPLC_VITVI | 78.462 | 195 | 42 | 0 | 1 | 195 | 1 | 195 | 2.07e-105 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa0317160 | -0.805810 | 1.115100e-49 | -8.615850e-47 |
| Msa0063890 | Msa0317160 | 0.802634 | 5.110968e-49 | -8.615850e-47 |
| Msa0081520 | Msa0317160 | 0.815563 | 8.668965e-52 | -8.615850e-47 |
| Msa0093850 | Msa0317160 | 0.821876 | 3.197415e-53 | -8.615850e-47 |
| Msa0094580 | Msa0317160 | 0.803960 | 2.716018e-49 | -8.615850e-47 |
| Msa0101440 | Msa0317160 | 0.800273 | 1.557270e-48 | -8.615850e-47 |
| Msa0130240 | Msa0317160 | 0.805564 | 1.256235e-49 | -8.615850e-47 |
| Msa0154440 | Msa0317160 | 0.807874 | 4.084777e-50 | -8.615850e-47 |
| Msa0173890 | Msa0317160 | 0.814592 | 1.424465e-51 | -8.615850e-47 |
| Msa0188890 | Msa0317160 | 0.800596 | 1.337912e-48 | -8.615850e-47 |
| Msa0221000 | Msa0317160 | 0.818371 | 2.029349e-52 | -8.615850e-47 |
| Msa0231380 | Msa0317160 | 0.808914 | 2.450546e-50 | -8.615850e-47 |
| Msa0270660 | Msa0317160 | 0.804304 | 2.303243e-49 | -8.615850e-47 |
| Msa0277450 | Msa0317160 | 0.942839 | 3.521560e-102 | -8.615850e-47 |
| Msa0300270 | Msa0317160 | 0.828217 | 1.016272e-54 | -8.615850e-47 |
| Msa0300320 | Msa0317160 | 0.844539 | 7.103307e-59 | -8.615850e-47 |
| Msa0317160 | Msa0335800 | 0.803309 | 3.707268e-49 | -8.615850e-47 |
| Msa0317160 | Msa0337700 | 0.815136 | 1.079136e-51 | -8.615850e-47 |
| Msa0317160 | Msa0341690 | 0.830292 | 3.188295e-55 | -8.615850e-47 |
| Msa0317160 | Msa0345330 | 0.807415 | 5.112252e-50 | -8.615850e-47 |
| Msa0317160 | Msa0365100 | 0.815258 | 1.013671e-51 | -8.615850e-47 |
| Msa0317160 | Msa0378720 | 0.820724 | 5.897072e-53 | -8.615850e-47 |
| Msa0317160 | Msa0427100 | 0.804159 | 2.469099e-49 | -8.615850e-47 |
| Msa0317160 | Msa0427120 | 0.811321 | 7.424005e-51 | -8.615850e-47 |
| Msa0317160 | Msa0428240 | 0.819486 | 1.132736e-52 | -8.615850e-47 |
| Msa0317160 | Msa0473500 | 0.809615 | 1.734027e-50 | -8.615850e-47 |
| Msa0317160 | Msa0479170 | 0.814367 | 1.597013e-51 | -8.615850e-47 |
| Msa0317160 | Msa0479200 | 0.815121 | 1.087547e-51 | -8.615850e-47 |
| Msa0317160 | Msa0623330 | 0.808896 | 2.472082e-50 | -8.615850e-47 |
| Msa0317160 | Msa0626450 | 0.806471 | 8.096690e-50 | -8.615850e-47 |
| Msa0317160 | Msa0626490 | 0.810375 | 1.189374e-50 | -8.615850e-47 |
| Msa0317160 | Msa0626510 | 0.804319 | 2.286669e-49 | -8.615850e-47 |
| Msa0317160 | Msa0638480 | 0.832004 | 1.210259e-55 | -8.615850e-47 |
| Msa0317160 | Msa0664600 | 0.808296 | 3.321498e-50 | -8.615850e-47 |
| Msa0317160 | Msa0664910 | 0.827586 | 1.441794e-54 | -8.615850e-47 |
| Msa0317160 | Msa0710800 | 0.805400 | 1.359555e-49 | -8.615850e-47 |
| Msa0317160 | Msa0790610 | 0.801015 | 1.099181e-48 | -8.615850e-47 |
| Msa0317160 | Msa0807820 | 0.805071 | 1.593535e-49 | -8.615850e-47 |
| Msa0317160 | Msa1031930 | 0.825491 | 4.554256e-54 | -8.615850e-47 |
| Msa0317160 | Msa1040840 | 0.804390 | 2.210537e-49 | -8.615850e-47 |
| Msa0317160 | Msa1071770 | 0.801284 | 9.683186e-49 | -8.615850e-47 |
| Msa0317160 | Msa1079230 | 0.804965 | 1.677135e-49 | -8.615850e-47 |
| Msa0317160 | Msa1093260 | 0.805005 | 1.645111e-49 | -8.615850e-47 |
| Msa0317160 | Msa1123380 | 0.813366 | 2.654594e-51 | -8.615850e-47 |
| Msa0317160 | Msa1126450 | 0.801591 | 8.376484e-49 | -8.615850e-47 |
| Msa0317160 | Msa1163650 | -0.825686 | 4.093982e-54 | -8.615850e-47 |
| Msa0317160 | Msa1168950 | 0.800011 | 1.760471e-48 | -8.615850e-47 |
| Msa0317160 | Msa1208160 | 0.817322 | 3.502443e-52 | -8.615850e-47 |
| Msa0317160 | Msa1270420 | 0.800860 | 1.182270e-48 | -8.615850e-47 |
| Msa0317160 | Msa1276660 | 0.806957 | 6.391829e-50 | -8.615850e-47 |
| Msa0317160 | Msa1277490 | 0.826561 | 2.535566e-54 | -8.615850e-47 |
| Msa0317160 | Msa1298370 | 0.801799 | 7.593291e-49 | -8.615850e-47 |
| Msa0317160 | Msa1360980 | 0.819889 | 9.163070e-53 | -8.615850e-47 |
| Msa0317160 | Msa1377540 | -0.803511 | 3.366835e-49 | -8.615850e-47 |
| Msa0317160 | Msa1385890 | 0.810367 | 1.194182e-50 | -8.615850e-47 |
| Msa0317160 | Msa1386710 | 0.948297 | 1.247254e-106 | -8.615850e-47 |
| Msa0317160 | Msa1423350 | 0.816718 | 4.785917e-52 | -8.615850e-47 |
| Msa0317160 | Msa1443930 | 0.801397 | 9.177638e-49 | -8.615850e-47 |
| Msa0317160 | Msa1445390 | -0.800158 | 1.643168e-48 | -8.615850e-47 |
| Msa0317160 | Msa1449340 | -0.804987 | 1.659138e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317160 | MtrunA17_Chr2g0290281 | 98.895 | 181 | 2 | 0 | 21 | 201 | 1 | 181 | 6.79e-128 | 357 |
| Msa0317160 | MtrunA17_Chr4g0072591 | 29.379 | 177 | 120 | 2 | 24 | 195 | 1 | 177 | 4.42e-24 | 94.0 |
| Msa0317160 | MtrunA17_Chr3g0109681 | 32.317 | 164 | 101 | 3 | 28 | 191 | 42 | 195 | 3.02e-21 | 87.4 |
| Msa0317160 | MtrunA17_Chr5g0433491 | 30.909 | 165 | 104 | 4 | 28 | 191 | 34 | 189 | 1.01e-18 | 80.5 |
| Msa0317160 | MtrunA17_Chr4g0021111 | 30.822 | 146 | 85 | 3 | 29 | 171 | 6 | 138 | 3.23e-15 | 70.1 |
| Msa0317160 | MtrunA17_Chr7g0231191 | 26.316 | 171 | 116 | 4 | 28 | 198 | 19 | 179 | 6.91e-14 | 67.0 |
| Msa0317160 | MtrunA17_Chr8g0340351 | 29.814 | 161 | 104 | 3 | 26 | 177 | 33 | 193 | 1.96e-12 | 63.5 |
| Msa0317160 | MtrunA17_Chr7g0217691 | 26.744 | 172 | 118 | 3 | 20 | 189 | 20 | 185 | 4.78e-12 | 62.0 |
| Msa0317160 | MtrunA17_Chr7g0268681 | 27.895 | 190 | 122 | 6 | 9 | 191 | 5 | 186 | 1.08e-11 | 61.2 |
| Msa0317160 | MtrunA17_Chr4g0066711 | 31.410 | 156 | 104 | 3 | 32 | 187 | 29 | 181 | 1.80e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317160 | AT2G35760.1 | 68.718 | 195 | 60 | 1 | 1 | 195 | 1 | 194 | 1.91e-87 | 256 |
| Msa0317160 | AT4G16442.1 | 61.798 | 178 | 68 | 0 | 21 | 198 | 1 | 178 | 1.70e-79 | 235 |
| Msa0317160 | AT4G25830.1 | 35.294 | 170 | 104 | 3 | 27 | 195 | 3 | 167 | 3.03e-23 | 91.7 |
| Msa0317160 | AT1G17200.1 | 30.814 | 172 | 111 | 3 | 28 | 199 | 30 | 193 | 2.75e-22 | 90.1 |
| Msa0317160 | AT3G14380.1 | 29.240 | 171 | 103 | 3 | 23 | 188 | 15 | 172 | 5.60e-15 | 70.1 |
| Msa0317160 | AT4G15610.1 | 31.098 | 164 | 97 | 3 | 9 | 167 | 16 | 168 | 2.83e-14 | 68.6 |
| Msa0317160 | AT5G15290.1 | 28.000 | 150 | 103 | 2 | 23 | 170 | 20 | 166 | 9.64e-14 | 67.0 |
| Msa0317160 | AT4G15630.1 | 27.011 | 174 | 120 | 2 | 17 | 187 | 20 | 189 | 1.45e-11 | 61.2 |
| Msa0317160 | AT1G03700.1 | 29.710 | 138 | 87 | 2 | 29 | 166 | 7 | 134 | 2.13e-11 | 60.1 |
| Msa0317160 | AT4G03540.1 | 29.839 | 124 | 77 | 2 | 48 | 171 | 26 | 139 | 6.35e-11 | 58.9 |
Find 60 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCTGGTTTAGCATTTA+AGG | 0.092229 | 2_4:-14719891 | None:intergenic |
| CCTATAATCACTTTCTTTCT+AGG | 0.129889 | 2_4:+14719780 | Msa0317160:five_prime_UTR |
| TTAATGATTCATGTAATTAT+AGG | 0.216861 | 2_4:+14719927 | Msa0317160:five_prime_UTR |
| CCTAGAAAGAAAGTGATTAT+AGG | 0.292879 | 2_4:-14719780 | None:intergenic |
| GGTCAAGAATGGAGGCTTCT+AGG | 0.310942 | 2_4:-14719994 | None:intergenic |
| TCATCCATTGCAATTGTTCC+TGG | 0.311139 | 2_4:-14721866 | None:intergenic |
| AGGTTTGTGAATCTTGGTTT+AGG | 0.330696 | 2_4:+14720268 | Msa0317160:CDS |
| AAATTGCAAAACAACCAAAT+TGG | 0.332368 | 2_4:-14722119 | None:intergenic |
| ATGTTCTAATGCTTATTAAT+TGG | 0.333637 | 2_4:+14722227 | Msa0317160:three_prime_UTR |
| ACATCTCAAACCTTGAATTA+AGG | 0.337420 | 2_4:-14720635 | None:intergenic |
| TAATAAACTTTACAGGTTCC+TGG | 0.340752 | 2_4:+14720582 | Msa0317160:intron |
| ATGGTCCTAAACAAAAGAAA+TGG | 0.345442 | 2_4:+14719726 | None:intergenic |
| AATAGGTCTGTTCTGACATC+TGG | 0.349404 | 2_4:-14719905 | None:intergenic |
| TTCAGTCTCTTCCGTTTGTA+TGG | 0.355002 | 2_4:+14721993 | Msa0317160:CDS |
| AATTACATGAATCATTAAAT+AGG | 0.356990 | 2_4:-14719922 | None:intergenic |
| TGTGTAGTGAGTATGATTAA+AGG | 0.372404 | 2_4:+14720655 | Msa0317160:CDS |
| TTAGTATAAGTTAATATCAT+AGG | 0.383186 | 2_4:+14722049 | Msa0317160:three_prime_UTR |
| ATGTTTGTACTATGATAAAC+AGG | 0.392867 | 2_4:-14720202 | None:intergenic |
| ATCTGCTGTGTTTGCAAAGA+TGG | 0.404743 | 2_4:+14721842 | Msa0317160:CDS |
| TGGTCCTAAACAAAAGAAAT+GGG | 0.404833 | 2_4:+14719727 | None:intergenic |
| TGATAAACAGGAACAGTTCC+AGG | 0.407224 | 2_4:-14720190 | None:intergenic |
| GCTGGTTACTCCTTAATTCA+AGG | 0.432706 | 2_4:+14720625 | Msa0317160:CDS |
| CTATAATCACTTTCTTTCTA+GGG | 0.438716 | 2_4:+14719781 | Msa0317160:five_prime_UTR |
| TCTTCCTAGACATACAATAA+AGG | 0.438918 | 2_4:+14719825 | Msa0317160:five_prime_UTR |
| TTTCAACAAGCCCTTAGCTT+GGG | 0.448248 | 2_4:+14720687 | Msa0317160:CDS |
| GAATTTAGCTTTCTTCTGAA+TGG | 0.449071 | 2_4:-14720344 | None:intergenic |
| AGAAAATATAGCCCAAGCTA+AGG | 0.484898 | 2_4:-14720698 | None:intergenic |
| TTCTGCAACCAAGTTGGAGA+AGG | 0.490439 | 2_4:+14721912 | Msa0317160:CDS |
| TAGCTAACCCTTCTCCAACT+TGG | 0.494841 | 2_4:-14721920 | None:intergenic |
| ATGTCTAGGAAGAAGTAGTA+AGG | 0.497198 | 2_4:-14719815 | None:intergenic |
| ATGAAGATATGCAATATGTA+TGG | 0.503142 | 2_4:+14721885 | Msa0317160:CDS |
| GTTGCTAATGCTATAACTGC+TGG | 0.511879 | 2_4:+14720607 | Msa0317160:CDS |
| GTGTGACAAGTGGTCAAGAA+TGG | 0.513241 | 2_4:-14720005 | None:intergenic |
| AGCTAAATTCACTGACATGA+AGG | 0.513279 | 2_4:+14720357 | Msa0317160:CDS |
| GGAAAATTCTGCAACCAAGT+TGG | 0.516285 | 2_4:+14721906 | Msa0317160:CDS |
| CATGAAAGTGTTGGATAGGA+GGG | 0.520852 | 2_4:+14720222 | Msa0317160:CDS |
| CAAACATGAAAGTGTTGGAT+AGG | 0.521116 | 2_4:+14720218 | Msa0317160:CDS |
| TTGGGTGTAGGTGTTAGTCC+TGG | 0.521914 | 2_4:+14720172 | Msa0317160:CDS |
| ACATGAAAGTGTTGGATAGG+AGG | 0.523051 | 2_4:+14720221 | Msa0317160:CDS |
| GAGGGTTAGAATAACTGAGT+TGG | 0.530374 | 2_4:+14720240 | Msa0317160:CDS |
| AGCTCCTTTATTGTATGTCT+AGG | 0.530684 | 2_4:-14719829 | None:intergenic |
| GGCTTCTAGGACAGAGAAAG+AGG | 0.531910 | 2_4:-14719981 | None:intergenic |
| ATGATACTACCACCATACTA+AGG | 0.534220 | 2_4:-14721959 | None:intergenic |
| TTTGGTTAGCCTTAGTATGG+TGG | 0.542187 | 2_4:+14721950 | Msa0317160:CDS |
| GAAAATATAGCCCAAGCTAA+GGG | 0.555703 | 2_4:-14720697 | None:intergenic |
| AAAATGAGTTACTTGGGTGT+AGG | 0.573937 | 2_4:+14720160 | Msa0317160:exon |
| TCTGCAACCAAGTTGGAGAA+GGG | 0.578467 | 2_4:+14721913 | Msa0317160:CDS |
| AGTCTCTTCCGTTTGTATGG+TGG | 0.581332 | 2_4:+14721996 | Msa0317160:CDS |
| TCTGCTGTGTTTGCAAAGAT+GGG | 0.593013 | 2_4:+14721843 | Msa0317160:CDS |
| TGTGTTTGCAAAGATGGGCC+AGG | 0.595653 | 2_4:+14721848 | Msa0317160:CDS |
| ATGTATGTAGTTGTAGTGAA+TGG | 0.599094 | 2_4:+14722161 | Msa0317160:three_prime_UTR |
| TAGTACAAACATGAAAGTGT+TGG | 0.606008 | 2_4:+14720213 | Msa0317160:CDS |
| TGGGCCAGGAACAATTGCAA+TGG | 0.614108 | 2_4:+14721862 | Msa0317160:CDS |
| TGACAAGTGGTCAAGAATGG+AGG | 0.634675 | 2_4:-14720002 | None:intergenic |
| GGTCCTAAACAAAAGAAATG+GGG | 0.666443 | 2_4:+14719728 | None:intergenic |
| AAGAAAACAGTGGATTTGAG+TGG | 0.671545 | 2_4:-14722094 | None:intergenic |
| CAAATTGGCCAAGAAAACAG+TGG | 0.680213 | 2_4:-14722104 | None:intergenic |
| GGTAATGGCATATATAACAG+TGG | 0.698046 | 2_4:+14721797 | Msa0317160:intron |
| TTATAGCATTAGCAACAACC+AGG | 0.720662 | 2_4:-14720600 | None:intergenic |
| ATGCTGCAAAGTGTGACAAG+TGG | 0.721365 | 2_4:-14720015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACATGTTTATTAAAATA+AGG | - | chr2_4:14721427-14721446 | None:intergenic | 10.0% |
| !! | AATTACATGAATCATTAAAT+AGG | - | chr2_4:14719925-14719944 | None:intergenic | 15.0% |
| !! | TTAATGATTCATGTAATTAT+AGG | + | chr2_4:14719927-14719946 | Msa0317160:five_prime_UTR | 15.0% |
| !!! | TCTGATAAAATTTAAAACAT+TGG | - | chr2_4:14720419-14720438 | None:intergenic | 15.0% |
| !! | GATGAAAAAAATAGTTATAA+TGG | - | chr2_4:14720499-14720518 | None:intergenic | 15.0% |
| !! | TTATTAAAACCATCAAAATT+GGG | - | chr2_4:14720568-14720587 | None:intergenic | 15.0% |
| !! | TTTATTAAAACCATCAAAAT+TGG | - | chr2_4:14720569-14720588 | None:intergenic | 15.0% |
| !!! | AATAAATGTATGTTTTATGT+TGG | - | chr2_4:14721307-14721326 | None:intergenic | 15.0% |
| !! | TTAGTATAAGTTAATATCAT+AGG | + | chr2_4:14722049-14722068 | Msa0317160:three_prime_UTR | 15.0% |
| !! | TGAAAAGAAAGAAAAAAATG+TGG | - | chr2_4:14719862-14719881 | None:intergenic | 20.0% |
| !!! | ATGGTTTTAATAAACTTTAC+AGG | + | chr2_4:14720575-14720594 | Msa0317160:intron | 20.0% |
| !! | TTTCAAACAACAAACTAAAT+AGG | - | chr2_4:14721234-14721253 | None:intergenic | 20.0% |
| !!! | AAACCCTAAAGATTTTTATA+AGG | + | chr2_4:14721401-14721420 | Msa0317160:intron | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | - | chr2_4:14721635-14721654 | None:intergenic | 20.0% |
| !! | ATGTTCTAATGCTTATTAAT+TGG | + | chr2_4:14722227-14722246 | Msa0317160:three_prime_UTR | 20.0% |
| ! | CTATAATCACTTTCTTTCTA+GGG | + | chr2_4:14719781-14719800 | Msa0317160:five_prime_UTR | 25.0% |
| ! | AAGAGGTTAAGTAAGAAAAA+AGG | - | chr2_4:14719967-14719986 | None:intergenic | 25.0% |
| !!! | TTTGTGAGTGTTGTTTTTTA+AGG | + | chr2_4:14720136-14720155 | Msa0317160:five_prime_UTR | 25.0% |
| ! | TTAAGGAAAAATGAGTTACT+TGG | + | chr2_4:14720153-14720172 | Msa0317160:exon | 25.0% |
| ! | TAAGGAAAAATGAGTTACTT+GGG | + | chr2_4:14720154-14720173 | Msa0317160:exon | 25.0% |
| ! | ATGTTTGTACTATGATAAAC+AGG | - | chr2_4:14720205-14720224 | None:intergenic | 25.0% |
| ! | TTTAGTGTATGTTTGTGAAT+TGG | + | chr2_4:14720781-14720800 | Msa0317160:intron | 25.0% |
| ! | TTGTGAATTGGACAAAATTA+TGG | + | chr2_4:14720793-14720812 | Msa0317160:intron | 25.0% |
| !!! | AGTTAGTTTTAGAGATTAAG+AGG | - | chr2_4:14721117-14721136 | None:intergenic | 25.0% |
| ! | ACCTAATTGATATTGATGTT+AGG | + | chr2_4:14721141-14721160 | Msa0317160:intron | 25.0% |
| ! | TCCTAACATCAATATCAATT+AGG | - | chr2_4:14721145-14721164 | None:intergenic | 25.0% |
| ! | TATACTTACTACCATAATTG+AGG | + | chr2_4:14721188-14721207 | Msa0317160:intron | 25.0% |
| ! | ATACTTACTACCATAATTGA+GGG | + | chr2_4:14721189-14721208 | Msa0317160:intron | 25.0% |
| !!! | TTTGTTGTTTGAAATGAACA+TGG | + | chr2_4:14721240-14721259 | Msa0317160:intron | 25.0% |
| ! | GTTATTAAAAAGTGGGTATA+TGG | + | chr2_4:14721265-14721284 | Msa0317160:intron | 25.0% |
| !!! | AATAGATACGCTCTAAAAAA+TGG | + | chr2_4:14721348-14721367 | Msa0317160:intron | 25.0% |
| !! | AGGCCTTATAAAAATCTTTA+GGG | - | chr2_4:14721407-14721426 | None:intergenic | 25.0% |
| !! | AAGGCCTTATAAAAATCTTT+AGG | - | chr2_4:14721408-14721427 | None:intergenic | 25.0% |
| ! | CAACTTATAACTTACGAAAA+CGG | - | chr2_4:14721529-14721548 | None:intergenic | 25.0% |
| ! | AATAAGCCGAAAATAGTTTA+TGG | + | chr2_4:14721649-14721668 | Msa0317160:intron | 25.0% |
| !! | ACATGTCCATAAACTATTTT+CGG | - | chr2_4:14721658-14721677 | None:intergenic | 25.0% |
| !! | TTTTCAGAAACTCTTCTAAA+TGG | + | chr2_4:14721687-14721706 | Msa0317160:intron | 25.0% |
| !! | ACTTTTATATGTATGTATGC+AGG | + | chr2_4:14721776-14721795 | Msa0317160:intron | 25.0% |
| ! | ATGAAGATATGCAATATGTA+TGG | + | chr2_4:14721885-14721904 | Msa0317160:CDS | 25.0% |
| ! | GCAAAATTAAAAATGCGTAT+TGG | + | chr2_4:14722021-14722040 | Msa0317160:CDS | 25.0% |
| !! | ATTAAAAATGCGTATTGGTA+AGG | + | chr2_4:14722026-14722045 | Msa0317160:CDS | 25.0% |
| ! | AAATTGCAAAACAACCAAAT+TGG | - | chr2_4:14722122-14722141 | None:intergenic | 25.0% |
| CCTAGAAAGAAAGTGATTAT+AGG | - | chr2_4:14719783-14719802 | None:intergenic | 30.0% | |
| CCTATAATCACTTTCTTTCT+AGG | + | chr2_4:14719780-14719799 | Msa0317160:five_prime_UTR | 30.0% | |
| TCTTCCTAGACATACAATAA+AGG | + | chr2_4:14719825-14719844 | Msa0317160:five_prime_UTR | 30.0% | |
| AAAAAACAACACTCACAAAC+AGG | - | chr2_4:14720135-14720154 | None:intergenic | 30.0% | |
| ! | TAGTACAAACATGAAAGTGT+TGG | + | chr2_4:14720213-14720232 | Msa0317160:CDS | 30.0% |
| !! | GAATTTAGCTTTCTTCTGAA+TGG | - | chr2_4:14720347-14720366 | None:intergenic | 30.0% |
| GACGTAAAAGTTAGTTATAC+TGG | + | chr2_4:14720437-14720456 | Msa0317160:intron | 30.0% | |
| ! | GAATATTGTCCCAATTTTGA+TGG | + | chr2_4:14720556-14720575 | Msa0317160:intron | 30.0% |
| TAATAAACTTTACAGGTTCC+TGG | + | chr2_4:14720582-14720601 | Msa0317160:intron | 30.0% | |
| ACATCTCAAACCTTGAATTA+AGG | - | chr2_4:14720638-14720657 | None:intergenic | 30.0% | |
| TGTGTAGTGAGTATGATTAA+AGG | + | chr2_4:14720655-14720674 | Msa0317160:CDS | 30.0% | |
| AGGTGAGTTTGAAAAAATCT+CGG | - | chr2_4:14720848-14720867 | None:intergenic | 30.0% | |
| !! | TTATTGCTTGTTTGTTATCG+AGG | - | chr2_4:14720868-14720887 | None:intergenic | 30.0% |
| TGATATTGATGTTAGGACTA+AGG | + | chr2_4:14721148-14721167 | Msa0317160:intron | 30.0% | |
| ATGGTAGTAAGTATACCTTA+TGG | - | chr2_4:14721183-14721202 | None:intergenic | 30.0% | |
| TACTTACTACCATAATTGAG+GGG | + | chr2_4:14721190-14721209 | Msa0317160:intron | 30.0% | |
| ACATGGCAGTTATTAAAAAG+TGG | + | chr2_4:14721257-14721276 | Msa0317160:intron | 30.0% | |
| CATGGCAGTTATTAAAAAGT+GGG | + | chr2_4:14721258-14721277 | Msa0317160:intron | 30.0% | |
| CAAAAAAAAATCTTCAGGGT+TGG | - | chr2_4:14721376-14721395 | None:intergenic | 30.0% | |
| !!! | CAACCCTGAAGATTTTTTTT+TGG | + | chr2_4:14721374-14721393 | Msa0317160:intron | 30.0% |
| CCTCCAAAAAAAAATCTTCA+GGG | - | chr2_4:14721380-14721399 | None:intergenic | 30.0% | |
| !!! | CCTGAAGATTTTTTTTTGGA+GGG | + | chr2_4:14721378-14721397 | Msa0317160:intron | 30.0% |
| CTTATTTCCAACAACTGTTT+AGG | - | chr2_4:14721566-14721585 | None:intergenic | 30.0% | |
| ATATGTATGTATGCAGGTAA+TGG | + | chr2_4:14721782-14721801 | Msa0317160:intron | 30.0% | |
| !!! | ATTTTTGGTTAGCCTTAGTA+TGG | + | chr2_4:14721947-14721966 | Msa0317160:CDS | 30.0% |
| !! | TGGTTGTTTTGCAATTTACA+AGG | + | chr2_4:14722125-14722144 | Msa0317160:three_prime_UTR | 30.0% |
| ATGTATGTAGTTGTAGTGAA+TGG | + | chr2_4:14722161-14722180 | Msa0317160:three_prime_UTR | 30.0% | |
| !! | ATGCCCCATTTCTTTTGTTT+AGG | - | chr2_4:14719734-14719753 | None:intergenic | 35.0% |
| ATGTCTAGGAAGAAGTAGTA+AGG | - | chr2_4:14719818-14719837 | None:intergenic | 35.0% | |
| AGCTCCTTTATTGTATGTCT+AGG | - | chr2_4:14719832-14719851 | None:intergenic | 35.0% | |
| ! | GACATCTGGTTTAGCATTTA+AGG | - | chr2_4:14719894-14719913 | None:intergenic | 35.0% |
| AAAATGAGTTACTTGGGTGT+AGG | + | chr2_4:14720160-14720179 | Msa0317160:exon | 35.0% | |
| !! | CAAACATGAAAGTGTTGGAT+AGG | + | chr2_4:14720218-14720237 | Msa0317160:CDS | 35.0% |
| !!! | GAATAACTGAGTTGGTTTTG+AGG | + | chr2_4:14720248-14720267 | Msa0317160:CDS | 35.0% |
| !!! | GTTTTGAGGTTTGTGAATCT+TGG | + | chr2_4:14720262-14720281 | Msa0317160:CDS | 35.0% |
| AGGTTTGTGAATCTTGGTTT+AGG | + | chr2_4:14720268-14720287 | Msa0317160:CDS | 35.0% | |
| AGCTAAATTCACTGACATGA+AGG | + | chr2_4:14720357-14720376 | Msa0317160:CDS | 35.0% | |
| CTTGACATTATAGCGAATCA+TGG | + | chr2_4:14720532-14720551 | Msa0317160:intron | 35.0% | |
| TTATAGCATTAGCAACAACC+AGG | - | chr2_4:14720603-14720622 | None:intergenic | 35.0% | |
| GAAAATATAGCCCAAGCTAA+GGG | - | chr2_4:14720700-14720719 | None:intergenic | 35.0% | |
| AGAAAATATAGCCCAAGCTA+AGG | - | chr2_4:14720701-14720720 | None:intergenic | 35.0% | |
| !! | TTAGCTTGGGCTATATTTTC+TGG | + | chr2_4:14720700-14720719 | Msa0317160:CDS | 35.0% |
| !!! | GTGTCTGTTTTTAGTGTACA+AGG | + | chr2_4:14720906-14720925 | Msa0317160:intron | 35.0% |
| TGCTTGATAAGACAAACTTG+AGG | - | chr2_4:14721074-14721093 | None:intergenic | 35.0% | |
| CTAAGGAATCATTCACCATA+AGG | + | chr2_4:14721165-14721184 | Msa0317160:intron | 35.0% | |
| ATTGTGATACCCCTCAATTA+TGG | - | chr2_4:14721202-14721221 | None:intergenic | 35.0% | |
| AAGTGGGTATATGGTAGATA+TGG | + | chr2_4:14721274-14721293 | Msa0317160:intron | 35.0% | |
| !!! | CCCTGAAGATTTTTTTTTGG+AGG | + | chr2_4:14721377-14721396 | Msa0317160:intron | 35.0% |
| CCCTCCAAAAAAAAATCTTC+AGG | - | chr2_4:14721381-14721400 | None:intergenic | 35.0% | |
| CATCTATCCTAAACAGTTGT+TGG | + | chr2_4:14721556-14721575 | Msa0317160:intron | 35.0% | |
| ! | CTTCTAAATGGTCTTACAAG+TGG | + | chr2_4:14721699-14721718 | Msa0317160:intron | 35.0% |
| ! | GGTAATGGCATATATAACAG+TGG | + | chr2_4:14721797-14721816 | Msa0317160:intron | 35.0% |
| ATGATACTACCACCATACTA+AGG | - | chr2_4:14721962-14721981 | None:intergenic | 35.0% | |
| ! | TTTTGCTACCACCATACAAA+CGG | - | chr2_4:14722007-14722026 | None:intergenic | 35.0% |
| ! | AAGAAAACAGTGGATTTGAG+TGG | - | chr2_4:14722097-14722116 | None:intergenic | 35.0% |
| ! | ACTCAAATCCACTGTTTTCT+TGG | + | chr2_4:14722096-14722115 | Msa0317160:three_prime_UTR | 35.0% |
| AATAGGTCTGTTCTGACATC+TGG | - | chr2_4:14719908-14719927 | None:intergenic | 40.0% | |
| TGATAAACAGGAACAGTTCC+AGG | - | chr2_4:14720193-14720212 | None:intergenic | 40.0% | |
| !! | ACATGAAAGTGTTGGATAGG+AGG | + | chr2_4:14720221-14720240 | Msa0317160:CDS | 40.0% |
| !! | CATGAAAGTGTTGGATAGGA+GGG | + | chr2_4:14720222-14720241 | Msa0317160:CDS | 40.0% |
| GAGGGTTAGAATAACTGAGT+TGG | + | chr2_4:14720240-14720259 | Msa0317160:CDS | 40.0% | |
| GTTGCTAATGCTATAACTGC+TGG | + | chr2_4:14720607-14720626 | Msa0317160:CDS | 40.0% | |
| GCTGGTTACTCCTTAATTCA+AGG | + | chr2_4:14720625-14720644 | Msa0317160:CDS | 40.0% | |
| ! | TTTTCAACAAGCCCTTAGCT+TGG | + | chr2_4:14720686-14720705 | Msa0317160:CDS | 40.0% |
| TTTCAACAAGCCCTTAGCTT+GGG | + | chr2_4:14720687-14720706 | Msa0317160:CDS | 40.0% | |
| !! | GGCTATATTTTCTGGTGATC+AGG | + | chr2_4:14720708-14720727 | Msa0317160:CDS | 40.0% |
| TTAGAGATTAAGAGGTCCCA+CGG | - | chr2_4:14721109-14721128 | None:intergenic | 40.0% | |
| ATCTGCTGTGTTTGCAAAGA+TGG | + | chr2_4:14721842-14721861 | Msa0317160:CDS | 40.0% | |
| TCTGCTGTGTTTGCAAAGAT+GGG | + | chr2_4:14721843-14721862 | Msa0317160:CDS | 40.0% | |
| TCATCCATTGCAATTGTTCC+TGG | - | chr2_4:14721869-14721888 | None:intergenic | 40.0% | |
| GGAAAATTCTGCAACCAAGT+TGG | + | chr2_4:14721906-14721925 | Msa0317160:CDS | 40.0% | |
| !!! | AGGGTTAGCTAGTGCATTTT+TGG | + | chr2_4:14721932-14721951 | Msa0317160:CDS | 40.0% |
| !! | TTTGGTTAGCCTTAGTATGG+TGG | + | chr2_4:14721950-14721969 | Msa0317160:CDS | 40.0% |
| TTCAGTCTCTTCCGTTTGTA+TGG | + | chr2_4:14721993-14722012 | Msa0317160:CDS | 40.0% | |
| CAAATTGGCCAAGAAAACAG+TGG | - | chr2_4:14722107-14722126 | None:intergenic | 40.0% | |
| ! | CACTGTTTTCTTGGCCAATT+TGG | + | chr2_4:14722105-14722124 | Msa0317160:three_prime_UTR | 40.0% |
| TGACAAGTGGTCAAGAATGG+AGG | - | chr2_4:14720005-14720024 | None:intergenic | 45.0% | |
| GTGTGACAAGTGGTCAAGAA+TGG | - | chr2_4:14720008-14720027 | None:intergenic | 45.0% | |
| ATGCTGCAAAGTGTGACAAG+TGG | - | chr2_4:14720018-14720037 | None:intergenic | 45.0% | |
| AAGCAATGTAACCAGTACCG+TGG | + | chr2_4:14721089-14721108 | Msa0317160:intron | 45.0% | |
| AGCAATGTAACCAGTACCGT+GGG | + | chr2_4:14721090-14721109 | Msa0317160:intron | 45.0% | |
| ! | TTCTGCAACCAAGTTGGAGA+AGG | + | chr2_4:14721912-14721931 | Msa0317160:CDS | 45.0% |
| ! | TCTGCAACCAAGTTGGAGAA+GGG | + | chr2_4:14721913-14721932 | Msa0317160:CDS | 45.0% |
| TAGCTAACCCTTCTCCAACT+TGG | - | chr2_4:14721923-14721942 | None:intergenic | 45.0% | |
| AGTCTCTTCCGTTTGTATGG+TGG | + | chr2_4:14721996-14722015 | Msa0317160:CDS | 45.0% | |
| !! | GGCTTCTAGGACAGAGAAAG+AGG | - | chr2_4:14719984-14720003 | None:intergenic | 50.0% |
| GGTCAAGAATGGAGGCTTCT+AGG | - | chr2_4:14719997-14720016 | None:intergenic | 50.0% | |
| TTGGGTGTAGGTGTTAGTCC+TGG | + | chr2_4:14720172-14720191 | Msa0317160:CDS | 50.0% | |
| ATTAAGAGGTCCCACGGTAC+TGG | - | chr2_4:14721103-14721122 | None:intergenic | 50.0% | |
| TGTGTTTGCAAAGATGGGCC+AGG | + | chr2_4:14721848-14721867 | Msa0317160:CDS | 50.0% | |
| TGGGCCAGGAACAATTGCAA+TGG | + | chr2_4:14721862-14721881 | Msa0317160:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 14719729 | 14722281 | 14719729 | ID=Msa0317160;Name=Msa0317160 |
| chr2_4 | mRNA | 14719729 | 14722281 | 14719729 | ID=Msa0317160-mRNA-1;Parent=Msa0317160;Name=Msa0317160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=434|1|1|1|1|1|3|235|201 |
| chr2_4 | exon | 14719729 | 14720386 | 14719729 | ID=Msa0317160-mRNA-1:exon:5524;Parent=Msa0317160-mRNA-1 |
| chr2_4 | exon | 14720597 | 14720729 | 14720597 | ID=Msa0317160-mRNA-1:exon:5525;Parent=Msa0317160-mRNA-1 |
| chr2_4 | exon | 14721798 | 14722281 | 14721798 | ID=Msa0317160-mRNA-1:exon:5526;Parent=Msa0317160-mRNA-1 |
| chr2_4 | five_prime_UTR | 14719729 | 14720162 | 14719729 | ID=Msa0317160-mRNA-1:five_prime_utr;Parent=Msa0317160-mRNA-1 |
| chr2_4 | CDS | 14720163 | 14720386 | 14720163 | ID=Msa0317160-mRNA-1:cds;Parent=Msa0317160-mRNA-1 |
| chr2_4 | CDS | 14720597 | 14720729 | 14720597 | ID=Msa0317160-mRNA-1:cds;Parent=Msa0317160-mRNA-1 |
| chr2_4 | CDS | 14721798 | 14722046 | 14721798 | ID=Msa0317160-mRNA-1:cds;Parent=Msa0317160-mRNA-1 |
| chr2_4 | three_prime_UTR | 14722047 | 14722281 | 14722047 | ID=Msa0317160-mRNA-1:three_prime_utr;Parent=Msa0317160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
