AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032920 MtrunA17_Chr1g0191891 97.758 223 5 0 1 223 40 262 7.41e-162 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032920 AT1G55000.2 63.761 218 76 2 7 221 2 219 1.24e-97 283
Msa0032920 AT1G55000.1 63.761 218 76 2 7 221 2 219 1.24e-97 283
Msa0032920 AT1G55000.3 63.761 218 76 2 7 221 2 219 1.24e-97 283

Find 83 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGAGGAGGTGTTGGTGG+TGG 0.241605 1_1:+60075434 None:intergenic
ACCCGATTTCTAGAAGCTTC+TGG 0.301921 1_1:-60075205 Msa0032920:CDS
ATTCAATTTCAACCCATGTT+TGG 0.313540 1_1:-60073952 Msa0032920:three_prime_UTR
CTCCAGAAGCTTCTAGAAAT+CGG 0.322000 1_1:+60075203 None:intergenic
GAGGAGGAGGTGTTGGTGGT+GGG 0.322473 1_1:+60075435 None:intergenic
AGGAGGAGGTGTTGGTGGTG+GGG 0.324079 1_1:+60075436 None:intergenic
TTCAATTTCAACCCATGTTT+GGG 0.326779 1_1:-60073951 Msa0032920:three_prime_UTR
AACTTGCATGCTTCTCTTCA+AGG 0.333288 1_1:+60074100 None:intergenic
TTGGGATAATCAAAGAAGTT+TGG 0.335365 1_1:-60073933 Msa0032920:three_prime_UTR
CGAGTTGCGTCTGCCGAGTC+TGG 0.340636 1_1:-60075304 Msa0032920:CDS
GAAGGTTCTGGAAGATGATT+TGG 0.344754 1_1:+60075348 None:intergenic
AGAATATCGGGATTACTAAT+AGG 0.352325 1_1:+60074269 None:intergenic
GATCGGGGATGGGAAGGTTC+TGG 0.355186 1_1:+60075336 None:intergenic
CTCAGAAGAAACCAACAAAA+AGG 0.366398 1_1:-60074132 Msa0032920:CDS
GAGTAAGTAATTTCTTGTTA+TGG 0.378803 1_1:-60073809 Msa0032920:three_prime_UTR
AGTAGGTCACTCCTAGTCTT+TGG 0.384001 1_1:-60073982 Msa0032920:exon
CGCCGTTAAGTACTCCGTTC+AGG 0.393861 1_1:-60075114 Msa0032920:intron
GTGGGAGGAGGAGGTGTTGG+TGG 0.412631 1_1:+60075431 None:intergenic
AAGAACTTGCTTTATTGAGC+TGG 0.414503 1_1:-60074240 Msa0032920:CDS
CTTAGCACCGTGGAAATTGA+AGG 0.424552 1_1:-60075240 Msa0032920:CDS
CAACTCGCACGTGCGAGATC+GGG 0.428494 1_1:+60075320 None:intergenic
GAAGTGGGAGGAGGAGGTGT+TGG 0.433837 1_1:+60075428 None:intergenic
TCCAGAAGCTTCTAGAAATC+GGG 0.438818 1_1:+60075204 None:intergenic
CCGCGGACCTTCAGTGGGGC+AGG 0.445516 1_1:-60074007 Msa0032920:CDS
GCAACTCGCACGTGCGAGAT+CGG 0.461154 1_1:+60075319 None:intergenic
ACTGTTGAAGTGGGAGGAGG+AGG 0.470676 1_1:+60075422 None:intergenic
AGAAGTTGCAGTGTTGTATC+CGG 0.473663 1_1:-60074201 Msa0032920:CDS
GACCTGAACGGAGTACTTAA+CGG 0.475918 1_1:+60075112 None:intergenic
GATTTGGAGGGTGTCGGTGG+AGG 0.478995 1_1:+60075364 None:intergenic
ATAAATAATCATGTTGGGTA+AGG 0.484092 1_1:-60073890 Msa0032920:three_prime_UTR
ATTACTGTTGAAGTGGGAGG+AGG 0.492526 1_1:+60075419 None:intergenic
AACAACATGATGAGCGATCA+TGG 0.498173 1_1:-60074320 Msa0032920:CDS
CCACGGTGCTAAGAAAGCTC+TGG 0.499969 1_1:+60075250 None:intergenic
CGCACGTGCGAGATCGGGGA+TGG 0.503094 1_1:+60075325 None:intergenic
CTACTTGCCTGCCCCACTGA+AGG 0.503713 1_1:+60074000 None:intergenic
AAGATGCTCAGAAGTGTAAA+GGG 0.504399 1_1:+60073621 None:intergenic
TACTACTGGTCTGTTTCAAA+CGG 0.508801 1_1:-60074059 Msa0032920:CDS
TGGAAATTGAAGGACGTAGT+TGG 0.509813 1_1:-60075230 Msa0032920:CDS
TTCTTTGATTATCCCAAACA+TGG 0.510911 1_1:+60073939 None:intergenic
GAAGATGCTCAGAAGTGTAA+AGG 0.513458 1_1:+60073620 None:intergenic
GAAGTTTGGTGATATGCAAA+TGG 0.514194 1_1:-60073919 Msa0032920:three_prime_UTR
TTTATGTCAGGTACATCATC+CGG 0.516672 1_1:+60074182 None:intergenic
CTTCAGTGGGGCAGGCAAGT+AGG 0.518848 1_1:-60073999 Msa0032920:CDS
GATGATTTGGAGGGTGTCGG+TGG 0.523454 1_1:+60075361 None:intergenic
GTGCGAGATCGGGGATGGGA+AGG 0.529104 1_1:+60075330 None:intergenic
GCGGAGAAATGAGAATTCAT+TGG 0.531909 1_1:+60075392 None:intergenic
GTGAAACTGCTCAATACTAC+TGG 0.532559 1_1:-60074073 Msa0032920:CDS
ACAATGTATTATTGTTAAAG+CGG 0.533470 1_1:-60073698 Msa0032920:three_prime_UTR
CTCCATCGGAGACTTGAGAC+TGG 0.535039 1_1:-60073831 Msa0032920:three_prime_UTR
TGATGATAAATAATCATGTT+GGG 0.539092 1_1:-60073895 Msa0032920:three_prime_UTR
ATGATGATAAATAATCATGT+TGG 0.542709 1_1:-60073896 Msa0032920:three_prime_UTR
GGTTCTGGAAGATGATTTGG+AGG 0.546672 1_1:+60075351 None:intergenic
ACATAGCTACTCTTTATGTC+AGG 0.547238 1_1:+60074170 None:intergenic
GCACGTGCGAGATCGGGGAT+GGG 0.550351 1_1:+60075326 None:intergenic
ATTATTTAGCTCCTCTCCAT+CGG 0.555897 1_1:-60073845 Msa0032920:three_prime_UTR
CTCCAGTCTCAAGTCTCCGA+TGG 0.560062 1_1:+60073829 None:intergenic
GCGATCATGGTATATACTCA+AGG 0.575308 1_1:-60074307 Msa0032920:CDS
AACTCGCACGTGCGAGATCG+GGG 0.575733 1_1:+60075321 None:intergenic
GAAGATGATTTGGAGGGTGT+CGG 0.579288 1_1:+60075358 None:intergenic
GTCTCAAGTCTCCGATGGAG+AGG 0.580475 1_1:+60073834 None:intergenic
GGTCACTCCTAGTCTTTGGA+AGG 0.584094 1_1:-60073978 Msa0032920:exon
ATGGTATATACTCAAGGGAA+AGG 0.586472 1_1:-60074301 Msa0032920:CDS
ACTACGTCCTTCAATTTCCA+CGG 0.587526 1_1:+60075233 None:intergenic
GGTGTCGGTGGAGGAAAGTG+CGG 0.588317 1_1:+60075373 None:intergenic
GGTTACCATCTCCCTTTGTG+AGG 0.590197 1_1:+60075271 None:intergenic
GGTAGCCTCACAAAGGGAGA+TGG 0.593006 1_1:-60075276 Msa0032920:CDS
TGGTGAGATTACTGTTGAAG+TGG 0.595286 1_1:+60075412 None:intergenic
CGTCTGCCGAGTCTGGAACT+CGG 0.602052 1_1:-60075297 Msa0032920:CDS
CGATCATGGTATATACTCAA+GGG 0.604160 1_1:-60074306 Msa0032920:CDS
GAACTCGGTAGCCTCACAAA+GGG 0.613154 1_1:-60075282 Msa0032920:CDS
ATATAGTTCAACTACTAATG+TGG 0.615555 1_1:-60073781 Msa0032920:three_prime_UTR
ATCTCGCATCGTATTGTGCG+TGG 0.618881 1_1:-60075155 Msa0032920:CDS
TCTTTGATTATCCCAAACAT+GGG 0.620249 1_1:+60073940 None:intergenic
GAATTAACCTTCCAAAGACT+AGG 0.622110 1_1:+60073971 None:intergenic
CCTGCCCCACTGAAGGTCCG+CGG 0.625706 1_1:+60074007 None:intergenic
GGAACTCGGTAGCCTCACAA+AGG 0.631909 1_1:-60075283 Msa0032920:CDS
TAAACCCAAACGGACCTGAA+CGG 0.641440 1_1:+60075100 None:intergenic
GGTGAGATTACTGTTGAAGT+GGG 0.649431 1_1:+60075413 None:intergenic
AGGCTACCGAGTTCCAGACT+CGG 0.651299 1_1:+60075291 None:intergenic
GTTCTGGAAGATGATTTGGA+GGG 0.706445 1_1:+60075352 None:intergenic
AATTCAGCAAGAGCAGCACG+AGG 0.707212 1_1:+60074032 None:intergenic
CCAGAGCTTTCTTAGCACCG+TGG 0.711370 1_1:-60075250 Msa0032920:CDS
GAGATTACTGTTGAAGTGGG+AGG 0.723899 1_1:+60075416 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATGTTTTTAATTTCA+TGG - chr1_1:60074414-60074433 Msa0032920:intron 10.0%
!!! TTAAAATGTTTTTAATTTCA+TGG - chr1_1:60074414-60074433 Msa0032920:intron 10.0%
!! CTAGTTTATAAATTCTTAAT+AGG + chr1_1:60074543-60074562 None:intergenic 15.0%
!!! TTTAATACTTTTGATAAAGT+TGG - chr1_1:60074637-60074656 Msa0032920:intron 15.0%
!! CTAGTTTATAAATTCTTAAT+AGG + chr1_1:60074543-60074562 None:intergenic 15.0%
!!! TTTAATACTTTTGATAAAGT+TGG - chr1_1:60074637-60074656 Msa0032920:intron 15.0%
!! AAATGATGACAATGAAATTA+TGG - chr1_1:60074022-60074041 Msa0032920:CDS 20.0%
!! ATATATTATGTGATTATCTC+CGG + chr1_1:60074118-60074137 None:intergenic 20.0%
!! TAATCACATAATATATGTGT+TGG - chr1_1:60074122-60074141 Msa0032920:CDS 20.0%
!!! AGTTCTTTTAACAAGAATAT+CGG + chr1_1:60074775-60074794 None:intergenic 20.0%
!! ATGATGATAAATAATCATGT+TGG - chr1_1:60075132-60075151 Msa0032920:CDS 20.0%
!! TGATGATAAATAATCATGTT+GGG - chr1_1:60075133-60075152 Msa0032920:CDS 20.0%
!! ACAATGTATTATTGTTAAAG+CGG - chr1_1:60075330-60075349 Msa0032920:CDS 20.0%
!! AAATGATGACAATGAAATTA+TGG - chr1_1:60074022-60074041 Msa0032920:CDS 20.0%
!! ATATATTATGTGATTATCTC+CGG + chr1_1:60074118-60074137 None:intergenic 20.0%
!! TAATCACATAATATATGTGT+TGG - chr1_1:60074122-60074141 Msa0032920:CDS 20.0%
!!! AGTTCTTTTAACAAGAATAT+CGG + chr1_1:60074775-60074794 None:intergenic 20.0%
!! ATGATGATAAATAATCATGT+TGG - chr1_1:60075132-60075151 Msa0032920:CDS 20.0%
!! TGATGATAAATAATCATGTT+GGG - chr1_1:60075133-60075152 Msa0032920:CDS 20.0%
!! ACAATGTATTATTGTTAAAG+CGG - chr1_1:60075330-60075349 Msa0032920:CDS 20.0%
! AACAAAGTAATAAACCCAAA+CGG + chr1_1:60073941-60073960 None:intergenic 25.0%
! TGAATATAGTTCATATGAGA+TGG - chr1_1:60074077-60074096 Msa0032920:CDS 25.0%
! TACTGTGATCAAATATGTTA+GGG - chr1_1:60074383-60074402 Msa0032920:intron 25.0%
! AGTATTAAACAGAAAAAACC+AGG + chr1_1:60074626-60074645 None:intergenic 25.0%
!!! AAATTTTTTGATGTTTCGAC+AGG - chr1_1:60074665-60074684 Msa0032920:intron 25.0%
!! GTTCTTTTAACAAGAATATC+GGG + chr1_1:60074774-60074793 None:intergenic 25.0%
! ATAAATAATCATGTTGGGTA+AGG - chr1_1:60075138-60075157 Msa0032920:CDS 25.0%
! GAGTAAGTAATTTCTTGTTA+TGG - chr1_1:60075219-60075238 Msa0032920:CDS 25.0%
! ATATAGTTCAACTACTAATG+TGG - chr1_1:60075247-60075266 Msa0032920:CDS 25.0%
! AACAAAGTAATAAACCCAAA+CGG + chr1_1:60073941-60073960 None:intergenic 25.0%
! TGAATATAGTTCATATGAGA+TGG - chr1_1:60074077-60074096 Msa0032920:CDS 25.0%
! TACTGTGATCAAATATGTTA+GGG - chr1_1:60074383-60074402 Msa0032920:intron 25.0%
! AGTATTAAACAGAAAAAACC+AGG + chr1_1:60074626-60074645 None:intergenic 25.0%
!!! AAATTTTTTGATGTTTCGAC+AGG - chr1_1:60074665-60074684 Msa0032920:intron 25.0%
!! GTTCTTTTAACAAGAATATC+GGG + chr1_1:60074774-60074793 None:intergenic 25.0%
! ATAAATAATCATGTTGGGTA+AGG - chr1_1:60075138-60075157 Msa0032920:CDS 25.0%
! GAGTAAGTAATTTCTTGTTA+TGG - chr1_1:60075219-60075238 Msa0032920:CDS 25.0%
! ATATAGTTCAACTACTAATG+TGG - chr1_1:60075247-60075266 Msa0032920:CDS 25.0%
ATGGTTTATGTATAAAGCAC+CGG - chr1_1:60074096-60074115 Msa0032920:CDS 30.0%
GTACTGTGATCAAATATGTT+AGG - chr1_1:60074382-60074401 Msa0032920:intron 30.0%
AGAATATCGGGATTACTAAT+AGG + chr1_1:60074762-60074781 None:intergenic 30.0%
ATTCAATTTCAACCCATGTT+TGG - chr1_1:60075076-60075095 Msa0032920:intron 30.0%
TTCAATTTCAACCCATGTTT+GGG - chr1_1:60075077-60075096 Msa0032920:intron 30.0%
TCTTTGATTATCCCAAACAT+GGG + chr1_1:60075091-60075110 None:intergenic 30.0%
TTCTTTGATTATCCCAAACA+TGG + chr1_1:60075092-60075111 None:intergenic 30.0%
TTGGGATAATCAAAGAAGTT+TGG - chr1_1:60075095-60075114 Msa0032920:intron 30.0%
ATGGTTTATGTATAAAGCAC+CGG - chr1_1:60074096-60074115 Msa0032920:CDS 30.0%
GTACTGTGATCAAATATGTT+AGG - chr1_1:60074382-60074401 Msa0032920:intron 30.0%
AGAATATCGGGATTACTAAT+AGG + chr1_1:60074762-60074781 None:intergenic 30.0%
ATTCAATTTCAACCCATGTT+TGG - chr1_1:60075076-60075095 Msa0032920:intron 30.0%
TTCAATTTCAACCCATGTTT+GGG - chr1_1:60075077-60075096 Msa0032920:intron 30.0%
TCTTTGATTATCCCAAACAT+GGG + chr1_1:60075091-60075110 None:intergenic 30.0%
TTCTTTGATTATCCCAAACA+TGG + chr1_1:60075092-60075111 None:intergenic 30.0%
TTGGGATAATCAAAGAAGTT+TGG - chr1_1:60075095-60075114 Msa0032920:intron 30.0%
AATGTTATCTCCATTACGGA+TGG + chr1_1:60074220-60074239 None:intergenic 35.0%
! ATCCGTAATGGAGATAACAT+TGG - chr1_1:60074219-60074238 Msa0032920:CDS 35.0%
CACCAATGTTATCTCCATTA+CGG + chr1_1:60074224-60074243 None:intergenic 35.0%
! GTAATGGAGATAACATTGGT+GGG - chr1_1:60074223-60074242 Msa0032920:CDS 35.0%
GTAAAGCACAGAAATCTCTA+AGG + chr1_1:60074326-60074345 None:intergenic 35.0%
! TCACTGCAATATCAGGTTTT+AGG - chr1_1:60074451-60074470 Msa0032920:intron 35.0%
! TATTTTCATTGTTCTGTGCC+TGG - chr1_1:60074605-60074624 Msa0032920:intron 35.0%
CGATCATGGTATATACTCAA+GGG - chr1_1:60074722-60074741 Msa0032920:intron 35.0%
ATGGTATATACTCAAGGGAA+AGG - chr1_1:60074727-60074746 Msa0032920:intron 35.0%
! AAGAACTTGCTTTATTGAGC+TGG - chr1_1:60074788-60074807 Msa0032920:intron 35.0%
TTTATGTCAGGTACATCATC+CGG + chr1_1:60074849-60074868 None:intergenic 35.0%
ACATAGCTACTCTTTATGTC+AGG + chr1_1:60074861-60074880 None:intergenic 35.0%
!!! CTTTTTGTTGGTTTCTTCTG+AGG + chr1_1:60074898-60074917 None:intergenic 35.0%
CTCAGAAGAAACCAACAAAA+AGG - chr1_1:60074896-60074915 Msa0032920:intron 35.0%
! TACTACTGGTCTGTTTCAAA+CGG - chr1_1:60074969-60074988 Msa0032920:intron 35.0%
GAATTAACCTTCCAAAGACT+AGG + chr1_1:60075060-60075079 None:intergenic 35.0%
! GAAGTTTGGTGATATGCAAA+TGG - chr1_1:60075109-60075128 Msa0032920:intron 35.0%
! ATTATTTAGCTCCTCTCCAT+CGG - chr1_1:60075183-60075202 Msa0032920:CDS 35.0%
! AAGATGCTCAGAAGTGTAAA+GGG + chr1_1:60075410-60075429 None:intergenic 35.0%
AATGTTATCTCCATTACGGA+TGG + chr1_1:60074220-60074239 None:intergenic 35.0%
! ATCCGTAATGGAGATAACAT+TGG - chr1_1:60074219-60074238 Msa0032920:CDS 35.0%
CACCAATGTTATCTCCATTA+CGG + chr1_1:60074224-60074243 None:intergenic 35.0%
! GTAATGGAGATAACATTGGT+GGG - chr1_1:60074223-60074242 Msa0032920:CDS 35.0%
GTAAAGCACAGAAATCTCTA+AGG + chr1_1:60074326-60074345 None:intergenic 35.0%
! TCACTGCAATATCAGGTTTT+AGG - chr1_1:60074451-60074470 Msa0032920:intron 35.0%
! TATTTTCATTGTTCTGTGCC+TGG - chr1_1:60074605-60074624 Msa0032920:intron 35.0%
CGATCATGGTATATACTCAA+GGG - chr1_1:60074722-60074741 Msa0032920:intron 35.0%
ATGGTATATACTCAAGGGAA+AGG - chr1_1:60074727-60074746 Msa0032920:intron 35.0%
! AAGAACTTGCTTTATTGAGC+TGG - chr1_1:60074788-60074807 Msa0032920:intron 35.0%
TTTATGTCAGGTACATCATC+CGG + chr1_1:60074849-60074868 None:intergenic 35.0%
ACATAGCTACTCTTTATGTC+AGG + chr1_1:60074861-60074880 None:intergenic 35.0%
!!! CTTTTTGTTGGTTTCTTCTG+AGG + chr1_1:60074898-60074917 None:intergenic 35.0%
CTCAGAAGAAACCAACAAAA+AGG - chr1_1:60074896-60074915 Msa0032920:intron 35.0%
! TACTACTGGTCTGTTTCAAA+CGG - chr1_1:60074969-60074988 Msa0032920:intron 35.0%
GAATTAACCTTCCAAAGACT+AGG + chr1_1:60075060-60075079 None:intergenic 35.0%
! GAAGTTTGGTGATATGCAAA+TGG - chr1_1:60075109-60075128 Msa0032920:intron 35.0%
! ATTATTTAGCTCCTCTCCAT+CGG - chr1_1:60075183-60075202 Msa0032920:CDS 35.0%
! AAGATGCTCAGAAGTGTAAA+GGG + chr1_1:60075410-60075429 None:intergenic 35.0%
GGTGAGATTACTGTTGAAGT+GGG + chr1_1:60073618-60073637 None:intergenic 40.0%
TGGTGAGATTACTGTTGAAG+TGG + chr1_1:60073619-60073638 None:intergenic 40.0%
GCGGAGAAATGAGAATTCAT+TGG + chr1_1:60073639-60073658 None:intergenic 40.0%
!! GTTCTGGAAGATGATTTGGA+GGG + chr1_1:60073679-60073698 None:intergenic 40.0%
!! GAAGGTTCTGGAAGATGATT+TGG + chr1_1:60073683-60073702 None:intergenic 40.0%
ACTACGTCCTTCAATTTCCA+CGG + chr1_1:60073798-60073817 None:intergenic 40.0%
TGGAAATTGAAGGACGTAGT+TGG - chr1_1:60073798-60073817 Msa0032920:three_prime_UTR 40.0%
! TCCAGAAGCTTCTAGAAATC+GGG + chr1_1:60073827-60073846 None:intergenic 40.0%
! CTCCAGAAGCTTCTAGAAAT+CGG + chr1_1:60073828-60073847 None:intergenic 40.0%
! GAAACAGAGCTCTTTTATCG+CGG + chr1_1:60074184-60074203 None:intergenic 40.0%
TACGGATGGACAAATCTGTT+TGG + chr1_1:60074206-60074225 None:intergenic 40.0%
ACAGATTTGTCCATCCGTAA+TGG - chr1_1:60074207-60074226 Msa0032920:CDS 40.0%
! CGTAATGGAGATAACATTGG+TGG - chr1_1:60074222-60074241 Msa0032920:CDS 40.0%
GAGATAACATTGGTGGGAAT+AGG - chr1_1:60074229-60074248 Msa0032920:CDS 40.0%
AGTGACCATGCTTCATAGAT+TGG - chr1_1:60074275-60074294 Msa0032920:CDS 40.0%
GATTTCTGTGCTTTACAGTC+AGG - chr1_1:60074330-60074349 Msa0032920:CDS 40.0%
TCACAGTACAGTAGTCAACA+AGG + chr1_1:60074371-60074390 None:intergenic 40.0%
ATTGCAGTGACAGGGAAATT+TGG + chr1_1:60074441-60074460 None:intergenic 40.0%
AACCTGATATTGCAGTGACA+GGG + chr1_1:60074449-60074468 None:intergenic 40.0%
AAACCTGATATTGCAGTGAC+AGG + chr1_1:60074450-60074469 None:intergenic 40.0%
TTTGATGTTTCGACAGGTGA+TGG - chr1_1:60074671-60074690 Msa0032920:intron 40.0%
AACAACATGATGAGCGATCA+TGG - chr1_1:60074708-60074727 Msa0032920:intron 40.0%
GCGATCATGGTATATACTCA+AGG - chr1_1:60074721-60074740 Msa0032920:intron 40.0%
AGAAGTTGCAGTGTTGTATC+CGG - chr1_1:60074827-60074846 Msa0032920:intron 40.0%
! GGAATCAAGCACCTTTTTGT+TGG + chr1_1:60074910-60074929 None:intergenic 40.0%
AACTTGCATGCTTCTCTTCA+AGG + chr1_1:60074931-60074950 None:intergenic 40.0%
GTGAAACTGCTCAATACTAC+TGG - chr1_1:60074955-60074974 Msa0032920:intron 40.0%
! GAAGATGCTCAGAAGTGTAA+AGG + chr1_1:60075411-60075430 None:intergenic 40.0%
GGTGAGATTACTGTTGAAGT+GGG + chr1_1:60073618-60073637 None:intergenic 40.0%
TGGTGAGATTACTGTTGAAG+TGG + chr1_1:60073619-60073638 None:intergenic 40.0%
GCGGAGAAATGAGAATTCAT+TGG + chr1_1:60073639-60073658 None:intergenic 40.0%
!! GTTCTGGAAGATGATTTGGA+GGG + chr1_1:60073679-60073698 None:intergenic 40.0%
!! GAAGGTTCTGGAAGATGATT+TGG + chr1_1:60073683-60073702 None:intergenic 40.0%
ACTACGTCCTTCAATTTCCA+CGG + chr1_1:60073798-60073817 None:intergenic 40.0%
TGGAAATTGAAGGACGTAGT+TGG - chr1_1:60073798-60073817 Msa0032920:three_prime_UTR 40.0%
! TCCAGAAGCTTCTAGAAATC+GGG + chr1_1:60073827-60073846 None:intergenic 40.0%
! CTCCAGAAGCTTCTAGAAAT+CGG + chr1_1:60073828-60073847 None:intergenic 40.0%
! GAAACAGAGCTCTTTTATCG+CGG + chr1_1:60074184-60074203 None:intergenic 40.0%
TACGGATGGACAAATCTGTT+TGG + chr1_1:60074206-60074225 None:intergenic 40.0%
ACAGATTTGTCCATCCGTAA+TGG - chr1_1:60074207-60074226 Msa0032920:CDS 40.0%
! CGTAATGGAGATAACATTGG+TGG - chr1_1:60074222-60074241 Msa0032920:CDS 40.0%
GAGATAACATTGGTGGGAAT+AGG - chr1_1:60074229-60074248 Msa0032920:CDS 40.0%
AGTGACCATGCTTCATAGAT+TGG - chr1_1:60074275-60074294 Msa0032920:CDS 40.0%
GATTTCTGTGCTTTACAGTC+AGG - chr1_1:60074330-60074349 Msa0032920:CDS 40.0%
TCACAGTACAGTAGTCAACA+AGG + chr1_1:60074371-60074390 None:intergenic 40.0%
ATTGCAGTGACAGGGAAATT+TGG + chr1_1:60074441-60074460 None:intergenic 40.0%
AACCTGATATTGCAGTGACA+GGG + chr1_1:60074449-60074468 None:intergenic 40.0%
AAACCTGATATTGCAGTGAC+AGG + chr1_1:60074450-60074469 None:intergenic 40.0%
TTTGATGTTTCGACAGGTGA+TGG - chr1_1:60074671-60074690 Msa0032920:intron 40.0%
AACAACATGATGAGCGATCA+TGG - chr1_1:60074708-60074727 Msa0032920:intron 40.0%
GCGATCATGGTATATACTCA+AGG - chr1_1:60074721-60074740 Msa0032920:intron 40.0%
AGAAGTTGCAGTGTTGTATC+CGG - chr1_1:60074827-60074846 Msa0032920:intron 40.0%
! GGAATCAAGCACCTTTTTGT+TGG + chr1_1:60074910-60074929 None:intergenic 40.0%
AACTTGCATGCTTCTCTTCA+AGG + chr1_1:60074931-60074950 None:intergenic 40.0%
GTGAAACTGCTCAATACTAC+TGG - chr1_1:60074955-60074974 Msa0032920:intron 40.0%
! GAAGATGCTCAGAAGTGTAA+AGG + chr1_1:60075411-60075430 None:intergenic 40.0%
ATTACTGTTGAAGTGGGAGG+AGG + chr1_1:60073612-60073631 None:intergenic 45.0%
GAGATTACTGTTGAAGTGGG+AGG + chr1_1:60073615-60073634 None:intergenic 45.0%
! GAAGATGATTTGGAGGGTGT+CGG + chr1_1:60073673-60073692 None:intergenic 45.0%
!! GGTTCTGGAAGATGATTTGG+AGG + chr1_1:60073680-60073699 None:intergenic 45.0%
CTTAGCACCGTGGAAATTGA+AGG - chr1_1:60073788-60073807 Msa0032920:three_prime_UTR 45.0%
! ACCCGATTTCTAGAAGCTTC+TGG - chr1_1:60073823-60073842 Msa0032920:three_prime_UTR 45.0%
! GACCTGAACGGAGTACTTAA+CGG + chr1_1:60073919-60073938 None:intergenic 45.0%
TAAACCCAAACGGACCTGAA+CGG + chr1_1:60073931-60073950 None:intergenic 45.0%
CCATGCTTCATAGATTGGTG+CGG - chr1_1:60074280-60074299 Msa0032920:CDS 45.0%
TTCCCTGTCACTGCAATATC+AGG - chr1_1:60074444-60074463 Msa0032920:intron 45.0%
! TGCTCTTGCTGAATTTTCCG+CGG - chr1_1:60075004-60075023 Msa0032920:intron 45.0%
! AGTAGGTCACTCCTAGTCTT+TGG - chr1_1:60075046-60075065 Msa0032920:intron 45.0%
ATTACTGTTGAAGTGGGAGG+AGG + chr1_1:60073612-60073631 None:intergenic 45.0%
GAGATTACTGTTGAAGTGGG+AGG + chr1_1:60073615-60073634 None:intergenic 45.0%
! GAAGATGATTTGGAGGGTGT+CGG + chr1_1:60073673-60073692 None:intergenic 45.0%
!! GGTTCTGGAAGATGATTTGG+AGG + chr1_1:60073680-60073699 None:intergenic 45.0%
CTTAGCACCGTGGAAATTGA+AGG - chr1_1:60073788-60073807 Msa0032920:three_prime_UTR 45.0%
! ACCCGATTTCTAGAAGCTTC+TGG - chr1_1:60073823-60073842 Msa0032920:three_prime_UTR 45.0%
! GACCTGAACGGAGTACTTAA+CGG + chr1_1:60073919-60073938 None:intergenic 45.0%
TAAACCCAAACGGACCTGAA+CGG + chr1_1:60073931-60073950 None:intergenic 45.0%
CCATGCTTCATAGATTGGTG+CGG - chr1_1:60074280-60074299 Msa0032920:CDS 45.0%
TTCCCTGTCACTGCAATATC+AGG - chr1_1:60074444-60074463 Msa0032920:intron 45.0%
! TGCTCTTGCTGAATTTTCCG+CGG - chr1_1:60075004-60075023 Msa0032920:intron 45.0%
! AGTAGGTCACTCCTAGTCTT+TGG - chr1_1:60075046-60075065 Msa0032920:intron 45.0%
GAACTCGGTAGCCTCACAAA+GGG - chr1_1:60073746-60073765 Msa0032920:three_prime_UTR 50.0%
GGTTACCATCTCCCTTTGTG+AGG + chr1_1:60073760-60073779 None:intergenic 50.0%
ATCTCGCATCGTATTGTGCG+TGG - chr1_1:60073873-60073892 Msa0032920:three_prime_UTR 50.0%
TACTCCGTTCAGGTCCGTTT+GGG - chr1_1:60073924-60073943 Msa0032920:three_prime_UTR 50.0%
!! TGTTGGTGTCATGTCCGTGT+CGG - chr1_1:60074139-60074158 Msa0032920:CDS 50.0%
CCGCACCAATCTATGAAGCA+TGG + chr1_1:60074283-60074302 None:intergenic 50.0%
AATTCAGCAAGAGCAGCACG+AGG + chr1_1:60074999-60075018 None:intergenic 50.0%
! AATTTTCCGCGGACCTTCAG+TGG - chr1_1:60075015-60075034 Msa0032920:intron 50.0%
! ATTTTCCGCGGACCTTCAGT+GGG - chr1_1:60075016-60075035 Msa0032920:intron 50.0%
! GGTCACTCCTAGTCTTTGGA+AGG - chr1_1:60075050-60075069 Msa0032920:intron 50.0%
GAACTCGGTAGCCTCACAAA+GGG - chr1_1:60073746-60073765 Msa0032920:three_prime_UTR 50.0%
GGTTACCATCTCCCTTTGTG+AGG + chr1_1:60073760-60073779 None:intergenic 50.0%
ATCTCGCATCGTATTGTGCG+TGG - chr1_1:60073873-60073892 Msa0032920:three_prime_UTR 50.0%
TACTCCGTTCAGGTCCGTTT+GGG - chr1_1:60073924-60073943 Msa0032920:three_prime_UTR 50.0%
!! TGTTGGTGTCATGTCCGTGT+CGG - chr1_1:60074139-60074158 Msa0032920:CDS 50.0%
CCGCACCAATCTATGAAGCA+TGG + chr1_1:60074283-60074302 None:intergenic 50.0%
AATTCAGCAAGAGCAGCACG+AGG + chr1_1:60074999-60075018 None:intergenic 50.0%
! AATTTTCCGCGGACCTTCAG+TGG - chr1_1:60075015-60075034 Msa0032920:intron 50.0%
! ATTTTCCGCGGACCTTCAGT+GGG - chr1_1:60075016-60075035 Msa0032920:intron 50.0%
! GGTCACTCCTAGTCTTTGGA+AGG - chr1_1:60075050-60075069 Msa0032920:intron 50.0%
ACTGTTGAAGTGGGAGGAGG+AGG + chr1_1:60073609-60073628 None:intergenic 55.0%
!! GATGATTTGGAGGGTGTCGG+TGG + chr1_1:60073670-60073689 None:intergenic 55.0%
AGGCTACCGAGTTCCAGACT+CGG + chr1_1:60073740-60073759 None:intergenic 55.0%
GGAACTCGGTAGCCTCACAA+AGG - chr1_1:60073745-60073764 Msa0032920:three_prime_UTR 55.0%
GGTAGCCTCACAAAGGGAGA+TGG - chr1_1:60073752-60073771 Msa0032920:three_prime_UTR 55.0%
! CCACGGTGCTAAGAAAGCTC+TGG + chr1_1:60073781-60073800 None:intergenic 55.0%
CCAGAGCTTTCTTAGCACCG+TGG - chr1_1:60073778-60073797 Msa0032920:three_prime_UTR 55.0%
CGCCGTTAAGTACTCCGTTC+AGG - chr1_1:60073914-60073933 Msa0032920:three_prime_UTR 55.0%
GTACTCCGTTCAGGTCCGTT+TGG - chr1_1:60073923-60073942 Msa0032920:three_prime_UTR 55.0%
GACATGTGTCGTGTCCGACA+CGG + chr1_1:60074156-60074175 None:intergenic 55.0%
CCTCGCATTAGGCGTGTCAT+CGG + chr1_1:60074255-60074274 None:intergenic 55.0%
GCATGGTCACTCCTCGCATT+AGG + chr1_1:60074266-60074285 None:intergenic 55.0%
! TTTTCCGCGGACCTTCAGTG+GGG - chr1_1:60075017-60075036 Msa0032920:intron 55.0%
GTCTCAAGTCTCCGATGGAG+AGG + chr1_1:60075197-60075216 None:intergenic 55.0%
CTCCATCGGAGACTTGAGAC+TGG - chr1_1:60075197-60075216 Msa0032920:CDS 55.0%
CTCCAGTCTCAAGTCTCCGA+TGG + chr1_1:60075202-60075221 None:intergenic 55.0%
ACTGTTGAAGTGGGAGGAGG+AGG + chr1_1:60073609-60073628 None:intergenic 55.0%
!! GATGATTTGGAGGGTGTCGG+TGG + chr1_1:60073670-60073689 None:intergenic 55.0%
AGGCTACCGAGTTCCAGACT+CGG + chr1_1:60073740-60073759 None:intergenic 55.0%
GGAACTCGGTAGCCTCACAA+AGG - chr1_1:60073745-60073764 Msa0032920:three_prime_UTR 55.0%
GGTAGCCTCACAAAGGGAGA+TGG - chr1_1:60073752-60073771 Msa0032920:three_prime_UTR 55.0%
! CCACGGTGCTAAGAAAGCTC+TGG + chr1_1:60073781-60073800 None:intergenic 55.0%
CCAGAGCTTTCTTAGCACCG+TGG - chr1_1:60073778-60073797 Msa0032920:three_prime_UTR 55.0%
CGCCGTTAAGTACTCCGTTC+AGG - chr1_1:60073914-60073933 Msa0032920:three_prime_UTR 55.0%
GTACTCCGTTCAGGTCCGTT+TGG - chr1_1:60073923-60073942 Msa0032920:three_prime_UTR 55.0%
GACATGTGTCGTGTCCGACA+CGG + chr1_1:60074156-60074175 None:intergenic 55.0%
CCTCGCATTAGGCGTGTCAT+CGG + chr1_1:60074255-60074274 None:intergenic 55.0%
GCATGGTCACTCCTCGCATT+AGG + chr1_1:60074266-60074285 None:intergenic 55.0%
! TTTTCCGCGGACCTTCAGTG+GGG - chr1_1:60075017-60075036 Msa0032920:intron 55.0%
GTCTCAAGTCTCCGATGGAG+AGG + chr1_1:60075197-60075216 None:intergenic 55.0%
CTCCATCGGAGACTTGAGAC+TGG - chr1_1:60075197-60075216 Msa0032920:CDS 55.0%
CTCCAGTCTCAAGTCTCCGA+TGG + chr1_1:60075202-60075221 None:intergenic 55.0%
!! AGGTGTTGGTGGTGGGGTTG+AGG + chr1_1:60073589-60073608 None:intergenic 60.0%
!! AGGAGGAGGTGTTGGTGGTG+GGG + chr1_1:60073595-60073614 None:intergenic 60.0%
!! GAGGAGGAGGTGTTGGTGGT+GGG + chr1_1:60073596-60073615 None:intergenic 60.0%
! GAAGTGGGAGGAGGAGGTGT+TGG + chr1_1:60073603-60073622 None:intergenic 60.0%
!! GGTGTCGGTGGAGGAAAGTG+CGG + chr1_1:60073658-60073677 None:intergenic 60.0%
!! GATTTGGAGGGTGTCGGTGG+AGG + chr1_1:60073667-60073686 None:intergenic 60.0%
GATCGGGGATGGGAAGGTTC+TGG + chr1_1:60073695-60073714 None:intergenic 60.0%
AACTCGCACGTGCGAGATCG+GGG + chr1_1:60073710-60073729 None:intergenic 60.0%
CAACTCGCACGTGCGAGATC+GGG + chr1_1:60073711-60073730 None:intergenic 60.0%
GCAACTCGCACGTGCGAGAT+CGG + chr1_1:60073712-60073731 None:intergenic 60.0%
! CGTCTGCCGAGTCTGGAACT+CGG - chr1_1:60073731-60073750 Msa0032920:three_prime_UTR 60.0%
CCGATGACACGCCTAATGCG+AGG - chr1_1:60074252-60074271 Msa0032920:CDS 60.0%
CTACTTGCCTGCCCCACTGA+AGG + chr1_1:60075031-60075050 None:intergenic 60.0%
CTTCAGTGGGGCAGGCAAGT+AGG - chr1_1:60075029-60075048 Msa0032920:intron 60.0%
!! AGGTGTTGGTGGTGGGGTTG+AGG + chr1_1:60073589-60073608 None:intergenic 60.0%
!! AGGAGGAGGTGTTGGTGGTG+GGG + chr1_1:60073595-60073614 None:intergenic 60.0%
!! GAGGAGGAGGTGTTGGTGGT+GGG + chr1_1:60073596-60073615 None:intergenic 60.0%
! GAAGTGGGAGGAGGAGGTGT+TGG + chr1_1:60073603-60073622 None:intergenic 60.0%
!! GGTGTCGGTGGAGGAAAGTG+CGG + chr1_1:60073658-60073677 None:intergenic 60.0%
!! GATTTGGAGGGTGTCGGTGG+AGG + chr1_1:60073667-60073686 None:intergenic 60.0%
GATCGGGGATGGGAAGGTTC+TGG + chr1_1:60073695-60073714 None:intergenic 60.0%
AACTCGCACGTGCGAGATCG+GGG + chr1_1:60073710-60073729 None:intergenic 60.0%
CAACTCGCACGTGCGAGATC+GGG + chr1_1:60073711-60073730 None:intergenic 60.0%
GCAACTCGCACGTGCGAGAT+CGG + chr1_1:60073712-60073731 None:intergenic 60.0%
! CGTCTGCCGAGTCTGGAACT+CGG - chr1_1:60073731-60073750 Msa0032920:three_prime_UTR 60.0%
CCGATGACACGCCTAATGCG+AGG - chr1_1:60074252-60074271 Msa0032920:CDS 60.0%
CTACTTGCCTGCCCCACTGA+AGG + chr1_1:60075031-60075050 None:intergenic 60.0%
CTTCAGTGGGGCAGGCAAGT+AGG - chr1_1:60075029-60075048 Msa0032920:intron 60.0%
!! GGAGGAGGAGGTGTTGGTGG+TGG + chr1_1:60073597-60073616 None:intergenic 65.0%
!! GTGGGAGGAGGAGGTGTTGG+TGG + chr1_1:60073600-60073619 None:intergenic 65.0%
GTGCGAGATCGGGGATGGGA+AGG + chr1_1:60073701-60073720 None:intergenic 65.0%
GCACGTGCGAGATCGGGGAT+GGG + chr1_1:60073705-60073724 None:intergenic 65.0%
CGAGTTGCGTCTGCCGAGTC+TGG - chr1_1:60073724-60073743 Msa0032920:three_prime_UTR 65.0%
!! GGAGGAGGAGGTGTTGGTGG+TGG + chr1_1:60073597-60073616 None:intergenic 65.0%
!! GTGGGAGGAGGAGGTGTTGG+TGG + chr1_1:60073600-60073619 None:intergenic 65.0%
GTGCGAGATCGGGGATGGGA+AGG + chr1_1:60073701-60073720 None:intergenic 65.0%
GCACGTGCGAGATCGGGGAT+GGG + chr1_1:60073705-60073724 None:intergenic 65.0%
CGAGTTGCGTCTGCCGAGTC+TGG - chr1_1:60073724-60073743 Msa0032920:three_prime_UTR 65.0%
CGCACGTGCGAGATCGGGGA+TGG + chr1_1:60073706-60073725 None:intergenic 70.0%
CCTGCCCCACTGAAGGTCCG+CGG + chr1_1:60075024-60075043 None:intergenic 70.0%
CGCACGTGCGAGATCGGGGA+TGG + chr1_1:60073706-60073725 None:intergenic 70.0%
CCTGCCCCACTGAAGGTCCG+CGG + chr1_1:60075024-60075043 None:intergenic 70.0%
CCGCGGACCTTCAGTGGGGC+AGG - chr1_1:60075021-60075040 Msa0032920:intron 75.0%
CCGCGGACCTTCAGTGGGGC+AGG - chr1_1:60075021-60075040 Msa0032920:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60073586 60075464 60073586 ID=Msa0032920;Name=Msa0032920
chr1_1 mRNA 60073586 60075464 60073586 ID=Msa0032920-mRNA-1;Parent=Msa0032920;Name=Msa0032920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=53|1|1|1|1|1|2|403|223
chr1_1 exon 60073586 60074363 60073586 ID=Msa0032920-mRNA-1:exon:18715;Parent=Msa0032920-mRNA-1
chr1_1 exon 60075115 60075464 60075115 ID=Msa0032920-mRNA-1:exon:18714;Parent=Msa0032920-mRNA-1
chr1_1 five_prime_UTR 60075412 60075464 60075412 ID=Msa0032920-mRNA-1:five_prime_utr;Parent=Msa0032920-mRNA-1
chr1_1 CDS 60075115 60075411 60075115 ID=Msa0032920-mRNA-1:cds;Parent=Msa0032920-mRNA-1
chr1_1 CDS 60073989 60074363 60073989 ID=Msa0032920-mRNA-1:cds;Parent=Msa0032920-mRNA-1
chr1_1 three_prime_UTR 60073586 60073988 60073586 ID=Msa0032920-mRNA-1:three_prime_utr;Parent=Msa0032920-mRNA-1
Gene Sequence

>Msa0032920

ATGAATTCTCATTTCTCCGCACTTTCCTCCACCGACACCCTCCAAATCATCTTCCAGAACCTTCCCATCCCCGATCTCGCACGTGCGAGTTGCGTCTGCCGAGTCTGGAACTCGGTAGCCTCACAAAGGGAGATGGTAACCAGAGCTTTCTTAGCACCGTGGAAATTGAAGGACGTAGTTGGAAACCCGATTTCTAGAAGCTTCTGGAGAGATAATTCACTTGCTAAATTCGCAATCTCGCATCGTATTGTGCGTGGTGATAGTGTTGCTAGTCTCGCCGTTAAGTACTCCGTTCAGGTGATGGACATAAAACGATTGAACAACATGATGAGCGATCATGGTATATACTCAAGGGAAAGGTTATTAATTCCTATTAGTAATCCCGATATTCTTGTTAAAAGAACTTGCTTTATTGAGCTGGATGTTAATGCGAAACGAGAAGTTGCAGTGTTGTATCCGGATGATGTACCTGACATAAAGAGTAGCTATGTATCAAACAGAATATCCTCAGAAGAAACCAACAAAAAGGTGCTTGATTCCTTGAAGAGAAGCATGCAAGTTGATAGTGAAACTGCTCAATACTACTGGTCTGTTTCAAACGGTGATCCTCGTGCTGCTCTTGCTGAATTTTCCGCGGACCTTCAGTGGGGCAGGCAAGTAGGTCACTCCTAG

Protein sequence

>Msa0032920

MNSHFSALSSTDTLQIIFQNLPIPDLARASCVCRVWNSVASQREMVTRAFLAPWKLKDVVGNPISRSFWRDNSLAKFAISHRIVRGDSVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPISNPDILVKRTCFIELDVNAKREVAVLYPDDVPDIKSSYVSNRISSEETNKKVLDSLKRSMQVDSETAQYYWSVSNGDPRAALAEFSADLQWGRQVGHS*