AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336710 MtrunA17_Chr2g0323171 96.277 188 7 0 1 188 1 188 1.58e-122 343
Msa0336710 MtrunA17_Chr4g0023411 63.874 191 64 2 1 186 1 191 2.46e-69 209
Msa0336710 MtrunA17_Chr5g0437671 70.968 124 36 0 4 127 24 147 5.37e-45 153
Msa0336710 MtrunA17_Chr7g0243431 59.677 124 37 3 9 120 18 140 2.76e-41 145
Msa0336710 MtrunA17_Chr3g0142081 61.062 113 41 2 29 139 1 112 9.71e-35 122
Msa0336710 MtrunA17_Chr1g0189941 66.279 86 28 1 45 129 4 89 1.84e-33 117
Msa0336710 MtrunA17_Chr7g0257911 61.628 86 33 0 40 125 6 91 2.83e-33 120
Msa0336710 MtrunA17_Chr1g0155751 67.416 89 29 0 37 125 11 99 3.05e-33 119
Msa0336710 MtrunA17_Chr5g0437371 67.647 68 22 0 53 120 54 121 1.61e-26 103
Msa0336710 MtrunA17_Chr7g0221471 44.792 96 49 2 62 155 48 141 3.07e-23 90.9
Msa0336710 MtrunA17_Chr4g0044881 52.083 96 40 1 65 160 114 203 3.18e-23 92.4
Msa0336710 MtrunA17_Chr7g0221501 40.000 125 75 0 62 186 48 172 6.13e-23 90.1
Msa0336710 MtrunA17_Chr5g0425561 60.256 78 31 0 46 123 154 231 9.33e-23 93.6
Msa0336710 MtrunA17_Chr3g0137174 71.930 57 16 0 65 121 8 64 1.34e-22 89.7
Msa0336710 MtrunA17_Chr8g0375031 66.071 56 19 0 65 120 125 180 2.45e-22 90.1
Msa0336710 MtrunA17_Chr3g0115631 62.162 74 26 1 52 123 135 208 3.33e-22 91.7
Msa0336710 MtrunA17_Chr1g0170531 71.186 59 16 1 64 121 88 146 7.05e-22 89.0
Msa0336710 MtrunA17_Chr2g0295421 54.930 71 32 0 53 123 84 154 1.40e-21 88.6
Msa0336710 MtrunA17_Chr4g0002631 70.175 57 17 0 65 121 8 64 1.90e-21 87.0
Msa0336710 MtrunA17_Chr4g0044871 67.797 59 19 0 65 123 96 154 2.06e-21 87.8
Msa0336710 MtrunA17_Chr3g0134161 53.521 71 31 1 65 135 45 113 2.11e-21 86.3
Msa0336710 MtrunA17_Chr7g0232261 53.165 79 37 0 46 124 42 120 2.54e-21 87.4
Msa0336710 MtrunA17_Chr8g0382491 58.333 72 30 0 52 123 100 171 3.08e-21 88.2
Msa0336710 MtrunA17_Chr4g0044901 67.797 59 19 0 65 123 96 154 5.35e-21 86.7
Msa0336710 MtrunA17_Chr2g0334031 40.870 115 53 2 42 156 97 196 5.49e-21 88.6
Msa0336710 MtrunA17_Chr4g0055761 56.098 82 27 2 41 121 129 202 6.34e-21 87.0
Msa0336710 MtrunA17_Chr4g0044911 66.102 59 20 0 65 123 96 154 7.67e-21 86.3
Msa0336710 MtrunA17_Chr4g0055801 71.186 59 16 1 64 121 153 211 8.80e-21 87.4
Msa0336710 MtrunA17_Chr4g0055781 69.492 59 17 1 64 121 101 159 9.90e-21 86.3
Msa0336710 MtrunA17_Chr5g0399441 63.333 60 22 0 65 124 28 87 1.02e-20 84.7
Msa0336710 MtrunA17_Chr6g0486701 64.516 62 22 0 65 126 44 105 1.23e-20 85.5
Msa0336710 MtrunA17_Chr1g0195151 62.069 58 22 0 65 122 77 134 1.85e-20 86.3
Msa0336710 MtrunA17_Chr1g0153151 46.429 84 42 1 65 148 44 124 2.70e-20 83.6
Msa0336710 MtrunA17_Chr5g0401871 59.322 59 24 0 65 123 25 83 7.32e-20 82.4
Msa0336710 MtrunA17_Chr2g0324131 66.102 59 20 0 65 123 218 276 8.04e-20 85.9
Msa0336710 MtrunA17_Chr8g0335331 60.317 63 24 1 62 123 122 184 9.35e-20 82.4
Msa0336710 MtrunA17_Chr2g0331231 47.674 86 41 1 43 124 15 100 9.91e-20 82.8
Msa0336710 MtrunA17_Chr7g0265851 65.000 60 21 0 65 124 24 83 1.29e-19 82.4
Msa0336710 MtrunA17_Chr3g0140161 63.333 60 22 0 65 124 43 102 1.55e-19 81.6
Msa0336710 MtrunA17_Chr8g0390091 43.878 98 55 0 29 126 1 98 1.99e-19 82.4
Msa0336710 MtrunA17_Chr8g0340311 60.656 61 24 0 64 124 46 106 2.23e-19 81.6
Msa0336710 MtrunA17_Chr1g0196781 61.017 59 23 0 65 123 152 210 2.81e-19 83.6
Msa0336710 MtrunA17_Chr8g0344961 44.565 92 39 1 65 156 124 203 2.86e-19 84.0
Msa0336710 MtrunA17_Chr8g0383591 61.404 57 22 0 65 121 145 201 3.51e-19 83.2
Msa0336710 MtrunA17_Chr7g0275841 60.345 58 23 0 65 122 28 85 3.58e-19 80.5
Msa0336710 MtrunA17_Chr4g0055951 63.333 60 22 0 65 124 74 133 3.98e-19 82.0
Msa0336710 MtrunA17_Chr5g0396911 46.809 94 46 1 65 158 112 201 3.99e-19 82.8
Msa0336710 MtrunA17_Chr8g0335311 60.000 60 23 1 65 123 96 155 4.17e-19 80.9
Msa0336710 MtrunA17_Chr4g0046161 52.000 75 31 2 53 122 41 115 5.59e-19 78.6
Msa0336710 MtrunA17_Chr2g0283171 60.317 63 24 1 64 125 62 124 9.47e-19 79.0
Msa0336710 MtrunA17_Chr2g0333011 64.912 57 20 0 65 121 7 63 1.81e-18 78.6
Msa0336710 MtrunA17_Chr8g0346741 42.424 99 53 2 24 122 2 96 1.81e-18 78.6
Msa0336710 MtrunA17_Chr5g0432821 58.065 62 26 0 64 125 123 184 2.42e-18 80.5
Msa0336710 MtrunA17_Chr4g0003421 64.912 57 20 0 65 121 40 96 3.48e-18 79.3
Msa0336710 MtrunA17_Chr4g0063751 63.158 57 21 0 65 121 7 63 3.78e-18 78.6
Msa0336710 MtrunA17_Chr2g0316931 56.667 60 26 0 63 122 29 88 4.70e-18 78.2
Msa0336710 MtrunA17_Chr8g0334801 61.017 59 23 0 65 123 52 110 5.37e-18 78.2
Msa0336710 MtrunA17_Chr2g0282621 53.030 66 31 0 60 125 10 75 5.95e-18 77.0
Msa0336710 MtrunA17_Chr4g0062551 40.952 105 43 3 33 129 24 117 1.14e-17 75.5
Msa0336710 MtrunA17_Chr2g0283181 52.273 88 38 2 39 125 126 210 1.18e-17 78.6
Msa0336710 MtrunA17_Chr1g0150631 54.839 62 28 0 65 126 38 99 1.26e-17 77.4
Msa0336710 MtrunA17_Chr7g0250731 56.667 60 25 1 65 123 61 120 1.28e-17 77.0
Msa0336710 MtrunA17_Chr1g0184081 60.656 61 23 1 63 122 19 79 1.28e-17 75.5
Msa0336710 MtrunA17_Chr1g0150691 54.839 62 28 0 65 126 22 83 1.40e-17 77.4
Msa0336710 MtrunA17_Chr1g0196871 62.712 59 21 1 64 121 15 73 2.21e-17 73.6
Msa0336710 MtrunA17_Chr1g0186671 60.563 71 25 2 55 122 7 77 2.32e-17 74.7
Msa0336710 MtrunA17_Chr7g0250721 56.667 60 25 1 65 123 61 120 2.59e-17 76.3
Msa0336710 MtrunA17_Chr2g0301171 56.897 58 25 0 65 122 19 76 3.64e-17 75.9
Msa0336710 MtrunA17_Chr1g0150661 53.226 62 29 0 65 126 35 96 4.11e-17 76.3
Msa0336710 MtrunA17_Chr2g0282651 55.932 59 26 0 63 121 68 126 4.32e-17 76.6
Msa0336710 MtrunA17_Chr7g0250711 55.000 60 26 1 65 123 60 119 4.44e-17 75.5
Msa0336710 MtrunA17_Chr7g0252381 58.824 68 22 1 65 126 42 109 5.19e-17 76.6
Msa0336710 MtrunA17_Chr1g0186731 52.703 74 31 2 53 122 6 79 5.27e-17 73.9
Msa0336710 MtrunA17_Chr1g0150671 54.839 62 28 0 65 126 46 107 5.31e-17 76.6
Msa0336710 MtrunA17_Chr4g0062161 40.952 105 43 3 33 129 24 117 5.73e-17 75.5
Msa0336710 MtrunA17_Chr8g0367911 60.714 56 22 0 65 120 44 99 8.96e-17 76.3
Msa0336710 MtrunA17_Chr6g0486711 57.500 80 33 1 65 144 49 127 9.26e-17 75.5
Msa0336710 MtrunA17_Chr3g0099871 57.895 57 24 0 65 121 27 83 1.03e-16 75.1
Msa0336710 MtrunA17_Chr4g0026881 56.250 64 27 1 59 121 91 154 1.98e-16 74.7
Msa0336710 MtrunA17_Chr5g0412641 52.778 72 27 1 65 129 46 117 2.40e-16 75.9
Msa0336710 MtrunA17_Chr3g0126321 60.714 56 22 0 65 120 113 168 2.40e-16 75.5
Msa0336710 MtrunA17_Chr1g0158971 60.714 56 22 0 65 120 115 170 4.18e-16 75.1
Msa0336710 MtrunA17_Chr8g0335321 53.333 60 27 1 65 123 96 155 5.33e-16 72.8
Msa0336710 MtrunA17_Chr2g0301181 55.172 58 26 0 65 122 19 76 5.54e-16 73.2
Msa0336710 MtrunA17_Chr2g0301191 56.897 58 25 0 65 122 19 76 6.57e-16 72.8
Msa0336710 MtrunA17_Chr4g0057241 53.333 75 32 3 64 138 14 85 6.69e-16 71.6
Msa0336710 MtrunA17_Chr5g0438801 56.140 57 25 0 65 121 51 107 8.96e-16 73.6
Msa0336710 MtrunA17_Chr6g0473941 52.703 74 34 1 65 138 33 105 1.12e-15 72.0
Msa0336710 MtrunA17_Chr7g0261101 59.677 62 24 1 62 122 17 78 1.19e-15 70.5
Msa0336710 MtrunA17_Chr1g0184061 57.143 63 26 1 64 125 76 138 1.38e-15 72.0
Msa0336710 MtrunA17_Chr1g0184031 54.839 62 27 1 60 120 79 140 1.96e-15 71.6
Msa0336710 MtrunA17_Chr5g0438831 56.140 57 25 0 65 121 46 102 2.09e-15 72.4
Msa0336710 MtrunA17_Chr7g0261151 60.656 61 23 1 62 121 17 77 2.17e-15 69.7
Msa0336710 MtrunA17_Chr4g0026931 56.250 64 27 1 59 121 125 188 2.45e-15 72.0
Msa0336710 MtrunA17_Chr1g0183981 59.649 57 22 1 65 120 75 131 2.51e-15 71.2
Msa0336710 MtrunA17_Chr1g0184011 54.839 62 27 1 60 120 79 140 2.53e-15 71.2
Msa0336710 MtrunA17_Chr8g0387801 49.296 71 36 0 65 135 107 177 3.00e-15 72.4
Msa0336710 MtrunA17_Chr6g0473961 41.880 117 64 3 41 157 31 143 3.18e-15 70.9
Msa0336710 MtrunA17_Chr1g0203861 60.714 56 22 0 65 120 44 99 3.49e-15 70.5
Msa0336710 MtrunA17_Chr4g0066931 57.143 56 24 0 65 120 53 108 3.59e-15 72.4
Msa0336710 MtrunA17_Chr3g0131601 49.474 95 41 2 62 154 73 162 3.85e-15 71.2
Msa0336710 MtrunA17_Chr6g0473861 54.839 62 28 0 65 126 63 124 4.02e-15 71.6
Msa0336710 MtrunA17_Chr4g0017851 54.386 57 26 0 65 121 118 174 5.41e-15 71.6
Msa0336710 MtrunA17_Chr6g0461271 43.023 86 47 1 35 120 5 88 5.57e-15 71.6
Msa0336710 MtrunA17_Chr6g0473931 60.714 56 22 0 65 120 33 88 5.77e-15 69.7
Msa0336710 MtrunA17_Chr7g0253424 49.315 73 37 0 48 120 22 94 6.70e-15 70.9
Msa0336710 MtrunA17_Chr6g0473881 48.750 80 40 1 41 120 87 165 6.89e-15 71.2
Msa0336710 MtrunA17_Chr6g0473741 38.136 118 71 2 26 143 28 143 7.22e-15 70.1
Msa0336710 MtrunA17_Chr7g0261181 51.685 89 37 3 52 139 1 84 1.02e-14 67.4
Msa0336710 MtrunA17_Chr1g0184071 52.000 75 27 2 55 120 51 125 1.04e-14 68.6
Msa0336710 MtrunA17_Chr1g0146191 60.938 64 25 0 60 123 42 105 1.20e-14 70.1
Msa0336710 MtrunA17_Chr6g0473781 38.655 119 69 3 41 159 34 148 1.35e-14 69.3
Msa0336710 MtrunA17_Chr6g0473771 40.816 98 51 3 26 120 5 98 1.35e-14 67.0
Msa0336710 MtrunA17_Chr6g0473971 48.750 80 40 1 41 120 31 109 1.40e-14 69.7
Msa0336710 MtrunA17_Chr2g0286161 47.368 76 31 1 45 120 39 105 1.53e-14 70.1
Msa0336710 MtrunA17_Chr5g0396191 42.063 126 57 4 65 178 11 132 1.68e-14 68.6
Msa0336710 MtrunA17_Chr2g0321071 51.389 72 32 3 65 133 47 118 1.77e-14 68.9
Msa0336710 MtrunA17_Chr6g0473981 46.237 93 47 2 65 157 54 143 2.38e-14 68.9
Msa0336710 MtrunA17_Chr8g0350701 57.143 56 24 0 65 120 27 82 3.82e-14 68.9
Msa0336710 MtrunA17_Chr6g0474001 58.929 56 23 0 65 120 54 109 4.73e-14 68.6
Msa0336710 MtrunA17_Chr3g0083501 51.020 49 24 0 73 121 3 51 7.24e-14 63.9
Msa0336710 MtrunA17_Chr5g0396301 49.180 61 29 1 65 123 18 78 9.15e-14 65.9
Msa0336710 MtrunA17_Chr3g0136551 45.833 72 39 0 65 136 65 136 1.31e-13 67.4
Msa0336710 MtrunA17_Chr1g0170471 62.000 50 18 1 73 121 91 140 1.54e-13 65.5
Msa0336710 MtrunA17_Chr2g0297331 53.623 69 29 2 55 122 6 72 1.57e-13 64.7
Msa0336710 MtrunA17_Chr1g0186681 54.839 62 26 1 63 122 17 78 1.67e-13 64.3
Msa0336710 MtrunA17_Chr7g0225131 51.613 62 27 1 65 126 29 87 2.06e-13 63.2
Msa0336710 MtrunA17_Chr3g0129421 62.903 62 22 1 65 125 170 231 2.18e-13 67.4
Msa0336710 MtrunA17_Chr6g0453661 50.769 65 32 0 56 120 29 93 3.58e-13 67.0
Msa0336710 MtrunA17_Chr7g0217991 55.000 60 27 0 61 120 38 97 4.43e-13 66.6
Msa0336710 MtrunA17_Chr1g0149331 61.667 60 23 0 62 121 4 63 4.73e-13 64.7
Msa0336710 MtrunA17_Chr1g0183961 59.677 62 24 1 62 122 24 85 4.79e-13 63.5
Msa0336710 MtrunA17_Chr5g0424051 42.697 89 50 1 41 128 72 160 7.43e-13 65.5
Msa0336710 MtrunA17_Chr8g0378811 50.847 59 29 0 62 120 52 110 7.95e-13 65.1
Msa0336710 MtrunA17_Chr4g0042761 53.333 60 28 0 61 120 44 103 8.72e-13 65.5
Msa0336710 MtrunA17_Chr5g0423811 40.426 94 46 2 38 123 63 154 1.87e-12 64.3
Msa0336710 MtrunA17_Chr3g0137831 55.405 74 29 2 65 137 8 78 2.02e-12 63.2
Msa0336710 MtrunA17_Chr6g0461941 63.333 60 22 0 64 123 19 78 2.86e-12 62.8
Msa0336710 MtrunA17_Chr3g0136541 45.714 70 38 0 67 136 42 111 3.06e-12 63.2
Msa0336710 MtrunA17_Chr5g0396171 50.877 57 28 0 67 123 26 82 3.42e-12 60.1
Msa0336710 MtrunA17_Chr3g0108241 51.316 76 35 2 48 122 99 173 5.83e-12 62.4
Msa0336710 MtrunA17_Chr3g0114761 52.308 65 29 1 59 121 19 83 7.90e-12 61.6
Msa0336710 MtrunA17_Chr5g0396741 64.407 59 21 0 65 123 117 175 1.31e-11 62.0
Msa0336710 MtrunA17_Chr5g0398061 37.607 117 58 3 65 167 49 164 2.36e-11 60.5
Msa0336710 MtrunA17_Chr1g0200931 46.032 63 31 1 65 124 23 85 2.95e-11 58.5
Msa0336710 MtrunA17_Chr6g0473791 45.070 71 38 1 41 111 34 103 4.25e-11 58.5
Msa0336710 MtrunA17_Chr5g0398091 37.607 117 58 3 65 167 54 169 4.29e-11 59.7
Msa0336710 MtrunA17_Chr8g0345531 42.029 69 36 2 47 112 95 162 4.66e-11 60.5
Msa0336710 MtrunA17_Chr5g0396181 54.098 61 28 0 63 123 19 79 4.79e-11 59.3
Msa0336710 MtrunA17_Chr1g0186721 53.333 75 30 2 49 122 5 75 9.25e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336710 AT2G40340.3 56.250 144 44 2 8 132 11 154 1.33e-49 162
Msa0336710 AT2G40340.1 56.250 144 44 2 8 132 11 154 2.04e-49 163
Msa0336710 AT2G40340.6 56.250 144 44 2 8 132 18 161 2.93e-49 163
Msa0336710 AT2G40350.2 58.065 124 48 1 8 127 13 136 1.26e-48 155
Msa0336710 AT2G40350.1 58.065 124 48 1 8 127 6 129 1.70e-48 155
Msa0336710 AT5G05410.2 63.359 131 44 2 4 134 22 148 7.01e-39 135
Msa0336710 AT5G05410.1 63.359 131 44 2 4 134 22 148 1.32e-38 135
Msa0336710 AT5G18450.1 68.675 83 26 0 38 120 7 89 1.26e-37 132
Msa0336710 AT1G75490.1 67.816 87 27 1 35 121 13 98 4.53e-37 127
Msa0336710 AT3G11020.1 49.711 173 77 3 11 180 22 187 1.00e-36 130
Msa0336710 AT2G40340.2 62.500 96 21 1 52 132 1 96 3.70e-35 125
Msa0336710 AT2G40340.5 62.500 96 21 1 52 132 1 96 3.70e-35 125
Msa0336710 AT2G40340.4 62.500 96 21 1 52 132 1 96 3.70e-35 125
Msa0336710 AT2G38340.1 61.682 107 32 2 39 136 44 150 1.84e-32 117
Msa0336710 AT3G57600.1 62.963 81 30 0 43 123 6 86 3.21e-31 114
Msa0336710 AT5G61890.1 52.381 84 32 1 38 121 71 146 2.58e-23 93.6
Msa0336710 AT1G46768.1 52.439 82 36 1 61 139 27 108 6.01e-23 90.1
Msa0336710 AT1G46768.2 52.439 82 36 1 61 139 27 108 6.01e-23 90.1
Msa0336710 AT1G46768.3 52.439 82 36 1 61 139 27 108 6.84e-23 89.7
Msa0336710 AT2G33710.1 67.241 58 19 0 64 121 69 126 7.59e-23 91.7
Msa0336710 AT2G33710.2 67.241 58 19 0 64 121 69 126 7.69e-23 91.7
Msa0336710 AT1G78080.1 62.857 70 26 0 54 123 141 210 2.03e-22 92.4
Msa0336710 AT5G65130.2 67.797 59 19 0 65 123 113 171 2.86e-22 91.3
Msa0336710 AT5G65130.1 67.797 59 19 0 65 123 111 169 2.98e-22 91.3
Msa0336710 AT2G47520.1 49.438 89 39 2 65 151 50 134 3.41e-22 88.6
Msa0336710 AT5G13330.1 48.315 89 42 1 33 121 11 95 3.52e-22 89.7
Msa0336710 AT2G22200.1 67.797 59 19 0 65 123 71 129 5.26e-22 90.1
Msa0336710 AT5G47230.1 57.317 82 32 2 41 121 134 213 5.65e-22 90.9
Msa0336710 AT3G16770.1 45.263 95 45 1 65 152 79 173 1.15e-21 89.0
Msa0336710 AT5G25190.1 70.175 57 17 0 65 121 8 64 2.20e-21 86.7
Msa0336710 AT1G22190.1 64.179 67 21 1 65 131 83 146 2.31e-21 88.6
Msa0336710 AT1G71450.1 43.478 138 63 4 47 178 10 138 2.91e-21 86.7
Msa0336710 AT2G35700.1 63.934 61 22 0 64 124 44 104 5.55e-21 85.9
Msa0336710 AT4G16750.1 52.273 88 37 2 38 124 16 99 1.08e-20 84.7
Msa0336710 AT4G06746.1 61.404 57 22 0 65 121 36 92 1.24e-20 84.0
Msa0336710 AT2G40220.1 69.118 68 21 0 53 120 43 110 1.31e-20 87.4
Msa0336710 AT4G39780.1 66.102 59 20 0 65 123 93 151 3.81e-20 85.5
Msa0336710 AT4G32800.1 60.000 65 26 0 60 124 14 78 3.95e-20 84.3
Msa0336710 AT1G36060.1 67.797 59 19 0 65 123 143 201 5.26e-20 85.9
Msa0336710 AT5G67190.1 57.353 68 28 1 65 131 21 88 6.29e-20 83.2
Msa0336710 AT2G20880.1 60.317 63 25 0 65 127 187 249 1.30e-19 85.1
Msa0336710 AT4G28140.1 55.405 74 33 0 65 138 143 216 1.33e-19 84.3
Msa0336710 AT3G16280.1 61.667 60 23 0 65 124 61 120 1.48e-19 83.2
Msa0336710 AT3G16280.2 61.667 60 23 0 65 124 79 138 1.68e-19 83.6
Msa0336710 AT2G44940.1 56.944 72 29 1 53 124 90 159 1.86e-19 84.0
Msa0336710 AT4G13620.1 62.712 59 22 0 65 123 232 290 2.37e-19 84.7
Msa0336710 AT4G11140.1 54.930 71 32 0 65 135 87 157 2.45e-19 83.6
Msa0336710 AT4G17500.1 67.797 59 18 1 64 121 147 205 3.05e-19 82.8
Msa0336710 AT5G47220.1 67.797 59 18 1 64 121 116 174 3.15e-19 82.4
Msa0336710 AT5G51190.1 59.375 64 25 1 59 121 66 129 3.42e-19 82.0
Msa0336710 AT2G25820.1 63.333 60 22 0 65 124 26 85 3.42e-19 82.0
Msa0336710 AT3G60490.1 63.333 60 22 0 65 124 71 130 5.76e-19 82.0
Msa0336710 AT4G36900.1 57.627 59 25 0 65 123 30 88 7.27e-19 80.5
Msa0336710 AT1G72360.1 51.471 68 33 0 57 124 17 84 7.92e-19 80.9
Msa0336710 AT5G11590.1 49.438 89 39 1 36 124 28 110 9.56e-19 80.9
Msa0336710 AT2G36450.1 66.102 59 19 1 65 122 15 73 1.29e-18 79.7
Msa0336710 AT4G17490.1 45.833 96 41 2 37 121 99 194 1.39e-18 81.3
Msa0336710 AT1G72360.3 51.471 68 33 0 57 124 66 133 1.47e-18 80.9
Msa0336710 AT1G72360.2 51.471 68 33 0 57 124 68 135 1.55e-18 80.9
Msa0336710 AT2G44840.1 50.704 71 34 1 54 123 81 151 2.03e-18 80.1
Msa0336710 AT5G25810.1 60.000 60 24 0 65 124 36 95 2.10e-18 79.7
Msa0336710 AT3G23230.1 53.333 75 34 1 59 132 14 88 2.14e-18 77.8
Msa0336710 AT1G01250.1 39.098 133 71 4 42 167 19 148 2.39e-18 79.0
Msa0336710 AT2G23340.1 57.627 59 25 0 65 123 28 86 2.72e-18 78.6
Msa0336710 AT5G25390.2 61.017 59 23 0 65 123 7 65 3.32e-18 78.6
Msa0336710 AT3G50260.1 55.932 59 26 0 65 123 21 79 5.14e-18 77.0
Msa0336710 AT1G15360.1 63.158 57 21 0 65 121 7 63 5.16e-18 78.2
Msa0336710 AT1G15360.2 63.158 57 21 0 65 121 7 63 5.16e-18 78.2
Msa0336710 AT1G21910.1 56.667 60 26 0 65 124 50 109 6.98e-18 78.6
Msa0336710 AT5G44210.1 47.727 88 44 2 63 149 31 117 1.26e-17 77.4
Msa0336710 AT3G20310.1 57.895 57 24 0 65 121 27 83 1.66e-17 77.8
Msa0336710 AT3G15210.1 55.932 59 26 0 65 123 25 83 2.64e-17 77.0
Msa0336710 AT5G61600.1 56.923 65 26 2 64 126 87 151 3.10e-17 77.0
Msa0336710 AT5G13910.1 55.882 68 24 1 65 126 20 87 4.56e-17 76.3
Msa0336710 AT4G25490.1 66.071 56 19 0 65 120 48 103 5.19e-17 75.9
Msa0336710 AT1G28360.1 55.000 60 27 0 63 122 10 69 5.71e-17 75.5
Msa0336710 AT1G12980.1 46.000 100 49 2 45 139 37 136 5.72e-17 77.4
Msa0336710 AT3G23240.1 47.674 86 30 2 36 120 67 138 6.75e-17 75.9
Msa0336710 AT1G71520.1 40.816 98 51 2 52 145 1 95 8.16e-17 73.9
Msa0336710 AT4G25470.1 46.939 98 44 2 32 122 12 108 1.06e-16 75.1
Msa0336710 AT2G31230.1 61.538 65 23 2 64 127 85 148 1.25e-16 75.5
Msa0336710 AT1G28160.1 49.383 81 41 0 65 145 39 119 1.66e-16 75.1
Msa0336710 AT1G03800.1 44.318 88 47 1 36 123 26 111 1.71e-16 75.1
Msa0336710 AT4G27950.1 58.929 56 23 0 65 120 118 173 1.81e-16 76.3
Msa0336710 AT5G07580.1 57.627 59 24 1 64 121 109 167 2.15e-16 74.3
Msa0336710 AT3G61630.1 58.929 56 23 0 65 120 105 160 2.93e-16 75.5
Msa0336710 AT1G22810.1 52.308 65 29 1 61 123 10 74 3.41e-16 72.0
Msa0336710 AT5G51990.1 64.286 56 20 0 65 120 54 109 3.79e-16 73.9
Msa0336710 AT5G25390.1 59.322 59 21 1 65 123 7 62 4.95e-16 72.8
Msa0336710 AT5G43410.1 59.322 59 23 1 65 122 15 73 7.01e-16 70.9
Msa0336710 AT4G25480.1 60.345 58 23 0 65 122 51 108 7.01e-16 73.2
Msa0336710 AT2G46310.1 56.667 60 26 0 61 120 95 154 7.17e-16 74.3
Msa0336710 AT4G31060.1 47.887 71 36 1 52 122 15 84 1.02e-15 72.0
Msa0336710 AT1G19210.1 47.059 68 36 0 55 122 2 69 1.20e-15 71.6
Msa0336710 AT1G24590.1 62.500 56 21 0 65 120 58 113 1.52e-15 73.6
Msa0336710 AT1G77200.1 62.295 61 23 0 65 125 43 103 2.33e-15 72.0
Msa0336710 AT5G18560.1 57.143 56 24 0 65 120 55 110 2.73e-15 73.2
Msa0336710 AT5G21960.1 38.532 109 47 2 65 153 7 115 2.98e-15 71.2
Msa0336710 AT1G74930.1 50.820 61 30 0 62 122 18 78 3.85e-15 70.5
Msa0336710 AT5G53290.1 57.143 56 24 0 65 120 125 180 3.98e-15 72.8
Msa0336710 AT1G28370.1 54.386 57 26 0 65 121 20 76 4.01e-15 70.1
Msa0336710 AT1G50640.1 54.386 57 26 0 65 121 28 84 5.01e-15 70.9
Msa0336710 AT5G50080.1 59.155 71 26 1 54 121 63 133 5.25e-15 70.9
Msa0336710 AT5G50080.2 60.000 70 25 1 55 121 73 142 5.26e-15 70.9
Msa0336710 AT5G07310.1 65.517 58 20 0 64 121 91 148 6.26e-15 71.2
Msa0336710 AT1G28370.2 54.386 57 26 0 65 121 58 114 6.27e-15 70.1
Msa0336710 AT4G23750.2 57.143 56 24 0 65 120 122 177 7.77e-15 71.6
Msa0336710 AT4G23750.1 57.143 56 24 0 65 120 122 177 7.77e-15 71.6
Msa0336710 AT1G77640.1 54.839 62 28 0 65 126 43 104 7.93e-15 70.5
Msa0336710 AT1G43160.1 64.912 57 20 0 65 121 61 117 1.04e-14 69.3
Msa0336710 AT4G34410.1 62.903 62 23 0 65 126 136 197 1.11e-14 70.5
Msa0336710 AT1G53910.1 41.007 139 75 2 37 168 90 228 1.55e-14 70.9
Msa0336710 AT1G53910.2 41.007 139 75 2 37 168 90 228 1.55e-14 70.9
Msa0336710 AT1G12890.1 50.704 71 32 1 65 132 21 91 1.76e-14 69.3
Msa0336710 AT1G71130.1 58.065 62 21 1 64 120 78 139 2.19e-14 67.8
Msa0336710 AT1G53910.3 45.192 104 57 0 65 168 123 226 2.84e-14 70.1
Msa0336710 AT5G64750.1 56.140 57 24 1 72 127 192 248 3.99e-14 70.1
Msa0336710 AT5G11190.1 43.750 112 56 3 65 176 7 111 4.09e-14 67.8
Msa0336710 AT3G14230.3 64.912 57 20 0 65 121 123 179 5.77e-14 69.3
Msa0336710 AT3G14230.2 64.912 57 20 0 65 121 124 180 5.84e-14 69.3
Msa0336710 AT1G22985.1 46.512 86 41 2 64 144 74 159 6.50e-14 66.6
Msa0336710 AT3G14230.1 64.912 57 20 0 65 121 128 184 6.58e-14 69.3
Msa0336710 AT5G19790.1 50.000 70 35 0 53 122 10 79 7.23e-14 68.2
Msa0336710 AT1G12610.1 44.444 99 50 4 65 161 30 125 7.91e-13 64.7
Msa0336710 AT4G18450.1 52.308 65 29 2 65 127 110 174 1.16e-12 65.5
Msa0336710 AT1G63030.2 42.857 98 53 3 65 161 30 125 2.10e-12 63.2
Msa0336710 AT1G63030.1 42.857 98 53 3 65 161 30 125 2.10e-12 63.2
Msa0336710 AT1G44830.1 53.846 65 29 1 65 128 35 99 2.35e-12 63.5
Msa0336710 AT1G64380.1 64.407 59 21 0 65 123 136 194 2.51e-12 64.7
Msa0336710 AT1G33760.1 53.968 63 29 0 61 123 16 78 4.54e-12 62.0
Msa0336710 AT5G61590.1 59.322 59 23 1 64 121 106 164 1.49e-11 61.2
Msa0336710 AT3G23220.1 51.282 78 31 2 65 141 14 85 1.49e-11 59.7

Find 87 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTTTAACACTGGATT+TGG 0.295520 2_4:+56252065 Msa0336710:three_prime_UTR
TTGGCGAAAGCTTGTGAAAA+AGG 0.300775 2_4:+56251124 Msa0336710:CDS
AGTGAAGAGGTGTGAGAAAT+TGG 0.338423 2_4:-56249491 None:intergenic
ACACCCTTTCTTCGATCCTT+TGG 0.358882 2_4:-56251251 None:intergenic
ACTCCTATCCCTGAGTTATC+TGG 0.383635 2_4:-56251580 None:intergenic
AGTAGAAGACAGTAATGATA+TGG 0.391317 2_4:+56251600 Msa0336710:CDS
TCTCAACTTTCCTAACGTTT+CGG 0.394413 2_4:+56251471 Msa0336710:CDS
TTGGCTGCAACTTTGCGAAC+AGG 0.401300 2_4:-56251232 None:intergenic
CTGAATATTAAGAGTGCATA+AGG 0.402987 2_4:-56251862 None:intergenic
AATGTCAATTTCTTTAACAC+TGG 0.403663 2_4:+56252059 Msa0336710:three_prime_UTR
TTCTTCTTTGAAGCTCTCTC+AGG 0.407623 2_4:+56249461 Msa0336710:five_prime_UTR
AGGCTTATCCACATCATTGC+CGG 0.425173 2_4:-56251212 None:intergenic
CTGCTTTATACTTAAGCATA+AGG 0.431779 2_4:-56251632 None:intergenic
TTATGTGTTGTAGTGCTACT+TGG 0.437902 2_4:+56251086 Msa0336710:intron
TGAGCCGGAGTTAAGTTAAT+CGG 0.439338 2_4:+56251669 Msa0336710:exon
TTGCTTATGACGAGGCAGCC+AGG 0.450923 2_4:+56251425 Msa0336710:CDS
TGAGTTATCTGGTATTATCA+TGG 0.471291 2_4:-56251569 None:intergenic
TAAGTCCCTGGGTAAGATAC+TGG 0.475551 2_4:+56251156 Msa0336710:CDS
ACAAAACCCTAGTTTCTTGT+CGG 0.478003 2_4:+56249346 Msa0336710:five_prime_UTR
AAAACTAAAATGAACTTGGT+TGG 0.478191 2_4:+56251832 Msa0336710:three_prime_UTR
ATCATTGCCGGCATCAAGTT+GGG 0.479760 2_4:-56251200 None:intergenic
GAGGTGTGAGACAAAGGACT+TGG 0.482842 2_4:+56251317 Msa0336710:CDS
TTGTAAAACTAAAATGAACT+TGG 0.490463 2_4:+56251828 Msa0336710:three_prime_UTR
AAAGGGTGTATGAAAGGTAA+AGG 0.503890 2_4:+56251265 Msa0336710:CDS
GATGACACCGACAAGAAACT+AGG 0.503980 2_4:-56249353 None:intergenic
CATCATTGCCGGCATCAAGT+TGG 0.505346 2_4:-56251201 None:intergenic
TTCTTGCTAATGATCAACTT+AGG 0.507229 2_4:+56251757 Msa0336710:three_prime_UTR
AAGTATAAAGCAGGAGAATG+AGG 0.509355 2_4:+56251642 Msa0336710:CDS
TTGGATTGAATTGCATATGT+TGG 0.511079 2_4:+56251105 Msa0336710:exon
GGAGAATGAGGAAGGTGAGC+CGG 0.511312 2_4:+56251654 Msa0336710:CDS
TGCTTATGACGAGGCAGCCA+GGG 0.511345 2_4:+56251426 Msa0336710:CDS
ACTGCCAAGTGATTTGCATC+TGG 0.512722 2_4:-56251529 None:intergenic
AGGGGATGGATCTAAGTCCC+TGG 0.516262 2_4:+56251144 Msa0336710:CDS
AATCTAGTAACCGAAACGTT+AGG 0.516531 2_4:-56251481 None:intergenic
TACTCCCTCGATTCGGCTCA+CGG 0.520241 2_4:-56251360 None:intergenic
CATAGCCTACTCCCTCGATT+CGG 0.522628 2_4:-56251367 None:intergenic
ATACTTAAGCATAAGGACAT+TGG 0.526606 2_4:-56251625 None:intergenic
ATCTGGTATTATCATGGACT+CGG 0.526869 2_4:-56251563 None:intergenic
GAGGCAGCCAGGGCAATGTA+TGG 0.529105 2_4:+56251436 Msa0336710:CDS
TATTGCAACAGCTAATCAAA+AGG 0.529508 2_4:-56251803 None:intergenic
AACTCGCGGTGTAATTATAG+AGG 0.530701 2_4:+56251298 Msa0336710:CDS
GCAGCCAAAGGATCGAAGAA+AGG 0.536603 2_4:+56251247 Msa0336710:CDS
CTTATGCTTAAGTATAAAGC+AGG 0.544467 2_4:+56251633 Msa0336710:CDS
ATAAAGCAGGAGAATGAGGA+AGG 0.546959 2_4:+56251646 Msa0336710:CDS
TATAATGCCCAACTTGATGC+CGG 0.548013 2_4:+56251193 Msa0336710:CDS
GAAATCCGTGAGCCGAATCG+AGG 0.551198 2_4:+56251355 Msa0336710:CDS
AAATCCGTGAGCCGAATCGA+GGG 0.551988 2_4:+56251356 Msa0336710:CDS
ATGATAATACCAGATAACTC+AGG 0.552682 2_4:+56251571 Msa0336710:CDS
AGGTGTGAGACAAAGGACTT+GGG 0.555224 2_4:+56251318 Msa0336710:CDS
TTCTCCAGATGCAAATCACT+TGG 0.556031 2_4:+56251525 Msa0336710:CDS
ATACCAGATAACTCAGGGAT+AGG 0.558390 2_4:+56251577 Msa0336710:CDS
TAATATCTTGTGATCTGCCC+TGG 0.558557 2_4:+56251971 Msa0336710:three_prime_UTR
TGGGTAAGATACTGGCAAGA+TGG 0.562078 2_4:+56251164 Msa0336710:CDS
CAGCCAAAGGATCGAAGAAA+GGG 0.570936 2_4:+56251248 Msa0336710:CDS
TCGAAGAAAGGGTGTATGAA+AGG 0.574846 2_4:+56251259 Msa0336710:CDS
ATTATAGAGGTGTGAGACAA+AGG 0.574888 2_4:+56251311 Msa0336710:CDS
ATCTTGCCAGTATCTTACCC+AGG 0.580110 2_4:-56251162 None:intergenic
TATGAAAGGTAAAGGAGGGC+CGG 0.582521 2_4:+56251273 Msa0336710:CDS
GTAAGATACTGGCAAGATGG+AGG 0.583870 2_4:+56251167 Msa0336710:CDS
AAGAGCAGCACCAATGGCAG+TGG 0.584735 2_4:-56251404 None:intergenic
CGAATCGAGGGAGTAGGCTA+TGG 0.587506 2_4:+56251368 Msa0336710:CDS
GGGGATGGATCTAAGTCCCT+GGG 0.593610 2_4:+56251145 Msa0336710:CDS
ACTTGATGCCGGCAATGATG+TGG 0.594869 2_4:+56251204 Msa0336710:CDS
TAAGATACTGGCAAGATGGA+GGG 0.596457 2_4:+56251168 Msa0336710:CDS
GTTCGCAAAGTTGCAGCCAA+AGG 0.599394 2_4:+56251235 Msa0336710:CDS
ACGAGAACCATACATTGCCC+TGG 0.603747 2_4:-56251443 None:intergenic
GTGAGCCGAATCGAGGGAGT+AGG 0.603966 2_4:+56251362 Msa0336710:CDS
TACTAGAGCACTCTGATCTG+TGG 0.604104 2_4:+56252002 Msa0336710:three_prime_UTR
AACGTTAGGAAAGTTGAGAC+GGG 0.606145 2_4:-56251467 None:intergenic
CGAGGGAGTAGGCTATGGCT+AGG 0.607993 2_4:+56251373 Msa0336710:CDS
AAACGTTAGGAAAGTTGAGA+CGG 0.611794 2_4:-56251468 None:intergenic
GATAGATTACCTGAGTGAAG+AGG 0.614922 2_4:-56249504 None:intergenic
TGATAATACCAGATAACTCA+GGG 0.620246 2_4:+56251572 Msa0336710:CDS
ATGACACCGACAAGAAACTA+GGG 0.621562 2_4:-56249352 None:intergenic
TTTCTCACACCTCTTCACTC+AGG 0.624805 2_4:+56249495 Msa0336710:five_prime_UTR
GGGTGTATGAAAGGTAAAGG+AGG 0.630003 2_4:+56251268 Msa0336710:CDS
TCTTGCCAGTATCTTACCCA+GGG 0.645583 2_4:-56251161 None:intergenic
TGCTGCTCTTGCTTATGACG+AGG 0.649251 2_4:+56251417 Msa0336710:CDS
ATAAGCAAGAGCAGCACCAA+TGG 0.652121 2_4:-56251410 None:intergenic
GGTGTATGAAAGGTAAAGGA+GGG 0.659313 2_4:+56251269 Msa0336710:CDS
AAGGAGGGCCGGAAAACTCG+CGG 0.659892 2_4:+56251284 Msa0336710:CDS
GGAACCGATTAACTTAACTC+CGG 0.661366 2_4:-56251673 None:intergenic
CAAAATGTACATCATCAACA+AGG 0.664178 2_4:-56251694 None:intergenic
GGTGTGAGACAAAGGACTTG+GGG 0.669400 2_4:+56251319 Msa0336710:CDS
TCTCGAAAACGATGATGTAG+CGG 0.675731 2_4:+56249317 Msa0336710:five_prime_UTR
GTGTGAGACAAAGGACTTGG+GGG 0.684279 2_4:+56251320 Msa0336710:CDS
AGTGTATAGTGTATACCTAG+AGG 0.701995 2_4:-56251945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGATAAACATGAAAAAT+CGG - chr2_4:56250272-56250291 None:intergenic 15.0%
!! TTGAAGAATGAAAAGAAAAT+GGG - chr2_4:56249535-56249554 None:intergenic 20.0%
!! TTTGAAGAATGAAAAGAAAA+TGG - chr2_4:56249536-56249555 None:intergenic 20.0%
!!! TCTTTTCATTCTTCAAATTA+TGG + chr2_4:56249539-56249558 Msa0336710:intron 20.0%
!!! CTTTTCATTCTTCAAATTAT+GGG + chr2_4:56249540-56249559 Msa0336710:intron 20.0%
!!! AATTAATCTAGAATCAATTC+TGG + chr2_4:56249825-56249844 Msa0336710:intron 20.0%
!! TTAAAAGAAACATGTTTAGA+GGG + chr2_4:56250016-56250035 Msa0336710:intron 20.0%
!!! TTCATGTCACAATTTATTTT+TGG + chr2_4:56250329-56250348 Msa0336710:intron 20.0%
!! ATGTGTAATAATTGTGATAA+GGG - chr2_4:56250554-56250573 None:intergenic 20.0%
!!! TGTTCTGAAATTTTTTCTTA+TGG + chr2_4:56250579-56250598 Msa0336710:intron 20.0%
!! ATAAATCACTCAATTCATAT+TGG - chr2_4:56251011-56251030 None:intergenic 20.0%
!! AAAAATCTGAAAATGTTAAG+AGG - chr2_4:56251055-56251074 None:intergenic 20.0%
!! TTGTAAAACTAAAATGAACT+TGG + chr2_4:56251828-56251847 Msa0336710:three_prime_UTR 20.0%
! AGAATCAATGTGAAAAAGAT+GGG - chr2_4:56249441-56249460 None:intergenic 25.0%
! AAGAATCAATGTGAAAAAGA+TGG - chr2_4:56249442-56249461 None:intergenic 25.0%
!! AACACACTTTTGCAAAATTA+CGG - chr2_4:56249704-56249723 None:intergenic 25.0%
!! AAAATTGAAAAGTGAGTTGA+AGG + chr2_4:56249768-56249787 Msa0336710:intron 25.0%
! AAGGTAAAGTGATTTATGTT+TGG + chr2_4:56249787-56249806 Msa0336710:intron 25.0%
!! TAAACATGTTTCTTTTAACC+CGG - chr2_4:56250014-56250033 None:intergenic 25.0%
! GTTAAAAGAAACATGTTTAG+AGG + chr2_4:56250015-56250034 Msa0336710:intron 25.0%
! TAAAAGAAACATGTTTAGAG+GGG + chr2_4:56250017-56250036 Msa0336710:intron 25.0%
! TGATCATTAATGTATGATGA+AGG + chr2_4:56250042-56250061 Msa0336710:intron 25.0%
!! AGAAAAATCTGAAATGTCAA+TGG - chr2_4:56250196-56250215 None:intergenic 25.0%
! GATGTGTAATAATTGTGATA+AGG - chr2_4:56250555-56250574 None:intergenic 25.0%
! AAAACTAAAATGAACTTGGT+TGG + chr2_4:56251832-56251851 Msa0336710:three_prime_UTR 25.0%
! AATGTCAATTTCTTTAACAC+TGG + chr2_4:56252059-56252078 Msa0336710:three_prime_UTR 25.0%
! AATTTCTTTAACACTGGATT+TGG + chr2_4:56252065-56252084 Msa0336710:three_prime_UTR 25.0%
! ATGCTGTTTGTACTTTGAAT+TGG + chr2_4:56249641-56249660 Msa0336710:intron 30.0%
! TAATCTAGAATCAATTCTGG+AGG + chr2_4:56249828-56249847 Msa0336710:intron 30.0%
GATTTCGACAAGTTTGATTA+CGG - chr2_4:56249873-56249892 None:intergenic 30.0%
TCATTAATGTATGATGAAGG+TGG + chr2_4:56250045-56250064 Msa0336710:intron 30.0%
AATGACCAACACATTAATGA+AGG + chr2_4:56250074-56250093 Msa0336710:intron 30.0%
CATAACCTTCATTAATGTGT+TGG - chr2_4:56250082-56250101 None:intergenic 30.0%
CAACTTGTCAGATTATACAA+AGG - chr2_4:56250471-56250490 None:intergenic 30.0%
TGTAATAATTGTGATAAGGG+AGG - chr2_4:56250551-56250570 None:intergenic 30.0%
!!! GACTATTTTGATCTTCACAA+TGG + chr2_4:56250606-56250625 Msa0336710:intron 30.0%
TCTTCTGCTACAATTCATAT+TGG - chr2_4:56250978-56250997 None:intergenic 30.0%
TTGGATTGAATTGCATATGT+TGG + chr2_4:56251105-56251124 Msa0336710:exon 30.0%
TGAGTTATCTGGTATTATCA+TGG - chr2_4:56251572-56251591 None:intergenic 30.0%
ATGATAATACCAGATAACTC+AGG + chr2_4:56251571-56251590 Msa0336710:CDS 30.0%
TGATAATACCAGATAACTCA+GGG + chr2_4:56251572-56251591 Msa0336710:CDS 30.0%
AGTAGAAGACAGTAATGATA+TGG + chr2_4:56251600-56251619 Msa0336710:CDS 30.0%
ATACTTAAGCATAAGGACAT+TGG - chr2_4:56251628-56251647 None:intergenic 30.0%
CTGCTTTATACTTAAGCATA+AGG - chr2_4:56251635-56251654 None:intergenic 30.0%
CTTATGCTTAAGTATAAAGC+AGG + chr2_4:56251633-56251652 Msa0336710:CDS 30.0%
CAAAATGTACATCATCAACA+AGG - chr2_4:56251697-56251716 None:intergenic 30.0%
! ATGATGTACATTTTGCTTAC+TGG + chr2_4:56251702-56251721 Msa0336710:three_prime_UTR 30.0%
! TGATGTACATTTTGCTTACT+GGG + chr2_4:56251703-56251722 Msa0336710:three_prime_UTR 30.0%
TTCTTGCTAATGATCAACTT+AGG + chr2_4:56251757-56251776 Msa0336710:three_prime_UTR 30.0%
TATTGCAACAGCTAATCAAA+AGG - chr2_4:56251806-56251825 None:intergenic 30.0%
! CTGAATATTAAGAGTGCATA+AGG - chr2_4:56251865-56251884 None:intergenic 30.0%
!!! TACATTTTGTTTTTGCCTCT+AGG + chr2_4:56251930-56251949 Msa0336710:three_prime_UTR 30.0%
! GCTCTAGTATAATTTTACCA+GGG - chr2_4:56251991-56252010 None:intergenic 30.0%
! TGCTCTAGTATAATTTTACC+AGG - chr2_4:56251992-56252011 None:intergenic 30.0%
!! TTGAATAGTTCCATTTTTGC+TGG + chr2_4:56252035-56252054 Msa0336710:three_prime_UTR 30.0%
ATTGACATTTCCAGCAAAAA+TGG - chr2_4:56252048-56252067 None:intergenic 30.0%
!!! AAGAAACTAGGGTTTTGTTC+GGG - chr2_4:56249344-56249363 None:intergenic 35.0%
!!! CAAGAAACTAGGGTTTTGTT+CGG - chr2_4:56249345-56249364 None:intergenic 35.0%
ACAAAACCCTAGTTTCTTGT+CGG + chr2_4:56249346-56249365 Msa0336710:five_prime_UTR 35.0%
GAAAAAGATGGGTGCATATT+GGG - chr2_4:56249430-56249449 None:intergenic 35.0%
TGAAAAAGATGGGTGCATAT+TGG - chr2_4:56249431-56249450 None:intergenic 35.0%
TTGATATCATGCCGAAATCA+CGG + chr2_4:56249671-56249690 Msa0336710:intron 35.0%
! ACACTTTTGCAAAATTACGG+TGG - chr2_4:56249701-56249720 None:intergenic 35.0%
GGAGTCAAAAATGATTCTTG+AGG - chr2_4:56249905-56249924 None:intergenic 35.0%
!! ATTTTTGACTCCTCCAAAAG+TGG + chr2_4:56249913-56249932 Msa0336710:intron 35.0%
!! TGTAAGTTTGGTTCCACTTT+TGG - chr2_4:56249929-56249948 None:intergenic 35.0%
ATCTAACTGTGATACCTAAC+CGG + chr2_4:56249992-56250011 Msa0336710:intron 35.0%
! ATGTTTCTTTTAACCCGGTT+AGG - chr2_4:56250009-56250028 None:intergenic 35.0%
ATGTATGATGAAGGTGGTTA+TGG + chr2_4:56250051-56250070 Msa0336710:intron 35.0%
TGAATAAGAACAACCAGTTC+AGG + chr2_4:56250402-56250421 Msa0336710:intron 35.0%
ACATCGAACAACTTCTGTAT+TGG + chr2_4:56250515-56250534 Msa0336710:intron 35.0%
CAACTTCTGTATTGGAAGTT+TGG + chr2_4:56250523-56250542 Msa0336710:intron 35.0%
GTGAAGTGATAATTCTGTCA+TGG - chr2_4:56250678-56250697 None:intergenic 35.0%
ATTTCCTATCCCACTGAATT+TGG - chr2_4:56250921-56250940 None:intergenic 35.0%
TTCAGTGGGATAGGAAATTA+TGG + chr2_4:56250923-56250942 Msa0336710:intron 35.0%
! TTATGTGTTGTAGTGCTACT+TGG + chr2_4:56251086-56251105 Msa0336710:intron 35.0%
! AAAGGGTGTATGAAAGGTAA+AGG + chr2_4:56251265-56251284 Msa0336710:CDS 35.0%
! ATTATAGAGGTGTGAGACAA+AGG + chr2_4:56251311-56251330 Msa0336710:CDS 35.0%
AAACGTTAGGAAAGTTGAGA+CGG - chr2_4:56251471-56251490 None:intergenic 35.0%
TCTCAACTTTCCTAACGTTT+CGG + chr2_4:56251471-56251490 Msa0336710:CDS 35.0%
AATCTAGTAACCGAAACGTT+AGG - chr2_4:56251484-56251503 None:intergenic 35.0%
ATCTGGTATTATCATGGACT+CGG - chr2_4:56251566-56251585 None:intergenic 35.0%
AAGTATAAAGCAGGAGAATG+AGG + chr2_4:56251642-56251661 Msa0336710:CDS 35.0%
!! TGCTTACTGGGATTTTGATA+TGG + chr2_4:56251715-56251734 Msa0336710:three_prime_UTR 35.0%
AGTGTATAGTGTATACCTAG+AGG - chr2_4:56251948-56251967 None:intergenic 35.0%
TCTCGAAAACGATGATGTAG+CGG + chr2_4:56249317-56249336 Msa0336710:five_prime_UTR 40.0%
!!! AGAAACTAGGGTTTTGTTCG+GGG - chr2_4:56249343-56249362 None:intergenic 40.0%
ATGACACCGACAAGAAACTA+GGG - chr2_4:56249355-56249374 None:intergenic 40.0%
!! TTCTTCTTTGAAGCTCTCTC+AGG + chr2_4:56249461-56249480 Msa0336710:five_prime_UTR 40.0%
! AGTGAAGAGGTGTGAGAAAT+TGG - chr2_4:56249494-56249513 None:intergenic 40.0%
GATAGATTACCTGAGTGAAG+AGG - chr2_4:56249507-56249526 None:intergenic 40.0%
!! AAGTTTGGTTCCACTTTTGG+AGG - chr2_4:56249926-56249945 None:intergenic 40.0%
GCGAAAGCTCAATGTAAGTT+TGG - chr2_4:56249941-56249960 None:intergenic 40.0%
CAGTTAGATTGCCGAAATCA+CGG - chr2_4:56249981-56250000 None:intergenic 40.0%
TCTAACTGTGATACCTAACC+GGG + chr2_4:56249993-56250012 Msa0336710:intron 40.0%
TTGTCAGTGTCATGCTATAC+TGG + chr2_4:56250102-56250121 Msa0336710:intron 40.0%
! TGCTATACTGGTTAGCGAAT+TGG + chr2_4:56250114-56250133 Msa0336710:intron 40.0%
! GCTATACTGGTTAGCGAATT+GGG + chr2_4:56250115-56250134 Msa0336710:intron 40.0%
GTCAGACAATTGAATCGACA+AGG - chr2_4:56250363-56250382 None:intergenic 40.0%
ACTGGTTGTTCTTATTCACG+AGG - chr2_4:56250400-56250419 None:intergenic 40.0%
TAATTCTGTCATGGTCAGAG+TGG - chr2_4:56250669-56250688 None:intergenic 40.0%
TTGTAGGCTAGAATGGGATA+TGG + chr2_4:56250725-56250744 Msa0336710:intron 40.0%
TTTCACGCAGTAAACAGTCT+CGG + chr2_4:56250775-56250794 Msa0336710:intron 40.0%
GCTGTTAATCAGAGATCAGA+TGG + chr2_4:56250797-56250816 Msa0336710:intron 40.0%
AGTTACTGCACCAAATTCAG+TGG + chr2_4:56250908-56250927 Msa0336710:intron 40.0%
GTTACTGCACCAAATTCAGT+GGG + chr2_4:56250909-56250928 Msa0336710:intron 40.0%
TTGGCGAAAGCTTGTGAAAA+AGG + chr2_4:56251124-56251143 Msa0336710:CDS 40.0%
TGGCGAAAGCTTGTGAAAAA+GGG + chr2_4:56251125-56251144 Msa0336710:CDS 40.0%
AAAGCTTGTGAAAAAGGGGA+TGG + chr2_4:56251130-56251149 Msa0336710:CDS 40.0%
TAAGATACTGGCAAGATGGA+GGG + chr2_4:56251168-56251187 Msa0336710:CDS 40.0%
TATAATGCCCAACTTGATGC+CGG + chr2_4:56251193-56251212 Msa0336710:CDS 40.0%
! TCGAAGAAAGGGTGTATGAA+AGG + chr2_4:56251259-56251278 Msa0336710:CDS 40.0%
GGTGTATGAAAGGTAAAGGA+GGG + chr2_4:56251269-56251288 Msa0336710:CDS 40.0%
! TAATTACACCGCGAGTTTTC+CGG - chr2_4:56251295-56251314 None:intergenic 40.0%
AACTCGCGGTGTAATTATAG+AGG + chr2_4:56251298-56251317 Msa0336710:CDS 40.0%
AACGTTAGGAAAGTTGAGAC+GGG - chr2_4:56251470-56251489 None:intergenic 40.0%
TTCTCCAGATGCAAATCACT+TGG + chr2_4:56251525-56251544 Msa0336710:CDS 40.0%
ATACCAGATAACTCAGGGAT+AGG + chr2_4:56251577-56251596 Msa0336710:CDS 40.0%
ATAAAGCAGGAGAATGAGGA+AGG + chr2_4:56251646-56251665 Msa0336710:CDS 40.0%
TGAGCCGGAGTTAAGTTAAT+CGG + chr2_4:56251669-56251688 Msa0336710:exon 40.0%
GGAACCGATTAACTTAACTC+CGG - chr2_4:56251676-56251695 None:intergenic 40.0%
TAATATCTTGTGATCTGCCC+TGG + chr2_4:56251971-56251990 Msa0336710:three_prime_UTR 40.0%
GATGACACCGACAAGAAACT+AGG - chr2_4:56249356-56249375 None:intergenic 45.0%
TTTCTCACACCTCTTCACTC+AGG + chr2_4:56249495-56249514 Msa0336710:five_prime_UTR 45.0%
ATATCATGCCGAAATCACGG+TGG + chr2_4:56249674-56249693 Msa0336710:intron 45.0%
TATCATGCCGAAATCACGGT+GGG + chr2_4:56249675-56249694 Msa0336710:intron 45.0%
GAGCTTTCGCAAAACCACTA+TGG + chr2_4:56249951-56249970 Msa0336710:intron 45.0%
ACTATGGCTCACCGTGATTT+CGG + chr2_4:56249967-56249986 Msa0336710:intron 45.0%
TTCAGGCATATCGTGGTCTA+TGG + chr2_4:56250419-56250438 Msa0336710:intron 45.0%
CACACTGCATCGAAAAAGAG+TGG + chr2_4:56250695-56250714 Msa0336710:intron 45.0%
GCATCGAAAAAGAGTGGTGT+CGG + chr2_4:56250701-56250720 Msa0336710:intron 45.0%
!! AAAGAGTGGTGTCGGTTTGT+AGG + chr2_4:56250709-56250728 Msa0336710:intron 45.0%
!! TGTCGGTTTGTAGGCTAGAA+TGG + chr2_4:56250718-56250737 Msa0336710:intron 45.0%
!! GTCGGTTTGTAGGCTAGAAT+GGG + chr2_4:56250719-56250738 Msa0336710:intron 45.0%
TGCACCAAATTCAGTGGGAT+AGG + chr2_4:56250914-56250933 Msa0336710:intron 45.0%
GGCGAAAGCTTGTGAAAAAG+GGG + chr2_4:56251126-56251145 Msa0336710:CDS 45.0%
TAAGTCCCTGGGTAAGATAC+TGG + chr2_4:56251156-56251175 Msa0336710:CDS 45.0%
TCTTGCCAGTATCTTACCCA+GGG - chr2_4:56251164-56251183 None:intergenic 45.0%
ATCTTGCCAGTATCTTACCC+AGG - chr2_4:56251165-56251184 None:intergenic 45.0%
TGGGTAAGATACTGGCAAGA+TGG + chr2_4:56251164-56251183 Msa0336710:CDS 45.0%
GTAAGATACTGGCAAGATGG+AGG + chr2_4:56251167-56251186 Msa0336710:CDS 45.0%
ATCATTGCCGGCATCAAGTT+GGG - chr2_4:56251203-56251222 None:intergenic 45.0%
AGGCTTATCCACATCATTGC+CGG - chr2_4:56251215-56251234 None:intergenic 45.0%
CAGCCAAAGGATCGAAGAAA+GGG + chr2_4:56251248-56251267 Msa0336710:CDS 45.0%
ACACCCTTTCTTCGATCCTT+TGG - chr2_4:56251254-56251273 None:intergenic 45.0%
GGGTGTATGAAAGGTAAAGG+AGG + chr2_4:56251268-56251287 Msa0336710:CDS 45.0%
TATGAAAGGTAAAGGAGGGC+CGG + chr2_4:56251273-56251292 Msa0336710:CDS 45.0%
AGGTGTGAGACAAAGGACTT+GGG + chr2_4:56251318-56251337 Msa0336710:CDS 45.0%
ACAAAGGACTTGGGGGAAAT+GGG + chr2_4:56251327-56251346 Msa0336710:CDS 45.0%
! GGTACTTTTACCACTGCCAT+TGG + chr2_4:56251394-56251413 Msa0336710:CDS 45.0%
ATAAGCAAGAGCAGCACCAA+TGG - chr2_4:56251413-56251432 None:intergenic 45.0%
! ACTGCCAAGTGATTTGCATC+TGG - chr2_4:56251532-56251551 None:intergenic 45.0%
ACTCCTATCCCTGAGTTATC+TGG - chr2_4:56251583-56251602 None:intergenic 45.0%
! TACTAGAGCACTCTGATCTG+TGG + chr2_4:56252002-56252021 Msa0336710:three_prime_UTR 45.0%
GAAATCACGGTGAGCCATAG+TGG - chr2_4:56249968-56249987 None:intergenic 50.0%
CAACCAGTTCAGGCATATCG+TGG + chr2_4:56250412-56250431 Msa0336710:intron 50.0%
AGACCACGATATGCCTGAAC+TGG - chr2_4:56250418-56250437 None:intergenic 50.0%
GGGATATGGATTTCCTGCTG+TGG + chr2_4:56250739-56250758 Msa0336710:intron 50.0%
ACGTGTGCTTTAACCACAGC+AGG - chr2_4:56250755-56250774 None:intergenic 50.0%
CATCATTGCCGGCATCAAGT+TGG - chr2_4:56251204-56251223 None:intergenic 50.0%
ACTTGATGCCGGCAATGATG+TGG + chr2_4:56251204-56251223 Msa0336710:CDS 50.0%
TTGGCTGCAACTTTGCGAAC+AGG - chr2_4:56251235-56251254 None:intergenic 50.0%
GTTCGCAAAGTTGCAGCCAA+AGG + chr2_4:56251235-56251254 Msa0336710:CDS 50.0%
GCAGCCAAAGGATCGAAGAA+AGG + chr2_4:56251247-56251266 Msa0336710:CDS 50.0%
GAGGTGTGAGACAAAGGACT+TGG + chr2_4:56251317-56251336 Msa0336710:CDS 50.0%
GGTGTGAGACAAAGGACTTG+GGG + chr2_4:56251319-56251338 Msa0336710:CDS 50.0%
GTGTGAGACAAAGGACTTGG+GGG + chr2_4:56251320-56251339 Msa0336710:CDS 50.0%
GACAAAGGACTTGGGGGAAA+TGG + chr2_4:56251326-56251345 Msa0336710:CDS 50.0%
AAATCCGTGAGCCGAATCGA+GGG + chr2_4:56251356-56251375 Msa0336710:CDS 50.0%
CATAGCCTACTCCCTCGATT+CGG - chr2_4:56251370-56251389 None:intergenic 50.0%
TGCTGCTCTTGCTTATGACG+AGG + chr2_4:56251417-56251436 Msa0336710:CDS 50.0%
ACGAGAACCATACATTGCCC+TGG - chr2_4:56251446-56251465 None:intergenic 50.0%
AGGGGATGGATCTAAGTCCC+TGG + chr2_4:56251144-56251163 Msa0336710:CDS 55.0%
GGGGATGGATCTAAGTCCCT+GGG + chr2_4:56251145-56251164 Msa0336710:CDS 55.0%
GAAATCCGTGAGCCGAATCG+AGG + chr2_4:56251355-56251374 Msa0336710:CDS 55.0%
!! TACTCCCTCGATTCGGCTCA+CGG - chr2_4:56251363-56251382 None:intergenic 55.0%
CGAATCGAGGGAGTAGGCTA+TGG + chr2_4:56251368-56251387 Msa0336710:CDS 55.0%
AAGAGCAGCACCAATGGCAG+TGG - chr2_4:56251407-56251426 None:intergenic 55.0%
TTGCTTATGACGAGGCAGCC+AGG + chr2_4:56251425-56251444 Msa0336710:CDS 55.0%
TGCTTATGACGAGGCAGCCA+GGG + chr2_4:56251426-56251445 Msa0336710:CDS 55.0%
GGAGAATGAGGAAGGTGAGC+CGG + chr2_4:56251654-56251673 Msa0336710:CDS 55.0%
ACGGTGGCCCACCGTGATTT+CGG - chr2_4:56249685-56249704 None:intergenic 60.0%
AAGGAGGGCCGGAAAACTCG+CGG + chr2_4:56251284-56251303 Msa0336710:CDS 60.0%
GTGAGCCGAATCGAGGGAGT+AGG + chr2_4:56251362-56251381 Msa0336710:CDS 60.0%
CGAGGGAGTAGGCTATGGCT+AGG + chr2_4:56251373-56251392 Msa0336710:CDS 60.0%
GAGGCAGCCAGGGCAATGTA+TGG + chr2_4:56251436-56251455 Msa0336710:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 56249306 56252088 56249306 ID=Msa0336710;Name=Msa0336710
chr2_4 mRNA 56249306 56252088 56249306 ID=Msa0336710-mRNA-1;Parent=Msa0336710;Name=Msa0336710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|0|0.5|2|401|188
chr2_4 exon 56249306 56249516 56249306 ID=Msa0336710-mRNA-1:exon:17167;Parent=Msa0336710-mRNA-1
chr2_4 exon 56251099 56252088 56251099 ID=Msa0336710-mRNA-1:exon:17168;Parent=Msa0336710-mRNA-1
chr2_4 five_prime_UTR 56249306 56249516 56249306 ID=Msa0336710-mRNA-1:five_prime_utr;Parent=Msa0336710-mRNA-1
chr2_4 five_prime_UTR 56251099 56251120 56251099 ID=Msa0336710-mRNA-1:five_prime_utr;Parent=Msa0336710-mRNA-1
chr2_4 CDS 56251121 56251687 56251121 ID=Msa0336710-mRNA-1:cds;Parent=Msa0336710-mRNA-1
chr2_4 three_prime_UTR 56251688 56252088 56251688 ID=Msa0336710-mRNA-1:three_prime_utr;Parent=Msa0336710-mRNA-1
Gene Sequence

>Msa0336710

ATGTTGGCGAAAGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAGATGGAGGGAATATAATGCCCAACTTGATGCCGGCAATGATGTGGATAAGCCTGTTCGCAAAGTTGCAGCCAAAGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCGGAAAACTCGCGGTGTAATTATAGAGGTGTGAGACAAAGGACTTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCGAATCGAGGGAGTAGGCTATGGCTAGGTACTTTTACCACTGCCATTGGTGCTGCTCTTGCTTATGACGAGGCAGCCAGGGCAATGTATGGTTCTCGTGCCCGTCTCAACTTTCCTAACGTTTCGGTTACTAGATTCTCTGATGAATCTTCAAACGATTCTCCAGATGCAAATCACTTGGCAGTATCAACAAATACCGAGTCCATGATAATACCAGATAACTCAGGGATAGGAGTAGAAGACAGTAATGATATGGAACCAATGTCCTTATGCTTAAGTATAAAGCAGGAGAATGAGGAAGGTGAGCCGGAGTTAAGTTAA
Protein sequence

>Msa0336710

MLAKACEKGDGSKSLGKILARWREYNAQLDAGNDVDKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGSRLWLGTFTTAIGAALAYDEAARAMYGSRARLNFPNVSVTRFSDESSNDSPDANHLAVSTNTESMIIPDNSGIGVEDSNDMEPMSLCLSIKQENEEGEPELS*