AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261170 MtrunA17_Chr2g0323171 96.809 188 6 0 1 188 1 188 2.87e-135 375
Msa0261170 MtrunA17_Chr4g0023411 63.874 191 64 2 1 186 1 191 2.35e-69 209
Msa0261170 MtrunA17_Chr5g0437671 70.968 124 36 0 4 127 24 147 5.32e-45 153
Msa0261170 MtrunA17_Chr7g0243431 59.677 124 37 3 9 120 18 140 2.96e-41 145
Msa0261170 MtrunA17_Chr3g0142081 61.062 113 41 2 29 139 1 112 9.01e-35 122
Msa0261170 MtrunA17_Chr1g0189941 66.279 86 28 1 45 129 4 89 1.67e-33 117
Msa0261170 MtrunA17_Chr7g0257911 61.628 86 33 0 40 125 6 91 2.77e-33 120
Msa0261170 MtrunA17_Chr1g0155751 67.416 89 29 0 37 125 11 99 2.89e-33 119
Msa0261170 MtrunA17_Chr5g0437371 67.647 68 22 0 53 120 54 121 1.57e-26 103
Msa0261170 MtrunA17_Chr7g0221471 44.792 96 49 2 62 155 48 141 3.00e-23 91.3
Msa0261170 MtrunA17_Chr4g0044881 52.083 96 40 1 65 160 114 203 3.32e-23 92.4
Msa0261170 MtrunA17_Chr7g0221501 40.000 125 75 0 62 186 48 172 6.54e-23 90.1
Msa0261170 MtrunA17_Chr5g0425561 60.256 78 31 0 46 123 154 231 9.14e-23 93.6
Msa0261170 MtrunA17_Chr3g0137174 71.930 57 16 0 65 121 8 64 1.39e-22 89.7
Msa0261170 MtrunA17_Chr8g0375031 66.071 56 19 0 65 120 125 180 2.56e-22 89.7
Msa0261170 MtrunA17_Chr3g0115631 62.162 74 26 1 52 123 135 208 3.10e-22 91.7
Msa0261170 MtrunA17_Chr1g0170531 71.186 59 16 1 64 121 88 146 7.05e-22 89.0
Msa0261170 MtrunA17_Chr2g0295421 54.930 71 32 0 53 123 84 154 1.44e-21 88.6
Msa0261170 MtrunA17_Chr4g0002631 70.175 57 17 0 65 121 8 64 1.84e-21 87.0
Msa0261170 MtrunA17_Chr3g0134161 53.521 71 31 1 65 135 45 113 2.06e-21 86.3
Msa0261170 MtrunA17_Chr4g0044871 67.797 59 19 0 65 123 96 154 2.12e-21 87.4
Msa0261170 MtrunA17_Chr7g0232261 53.165 79 37 0 46 124 42 120 2.54e-21 87.4
Msa0261170 MtrunA17_Chr8g0382491 58.333 72 30 0 52 123 100 171 2.93e-21 88.2
Msa0261170 MtrunA17_Chr2g0334031 40.870 115 53 2 42 156 97 196 5.22e-21 88.6
Msa0261170 MtrunA17_Chr4g0044901 67.797 59 19 0 65 123 96 154 5.41e-21 86.7
Msa0261170 MtrunA17_Chr4g0055761 56.098 82 27 2 41 121 129 202 6.27e-21 87.0
Msa0261170 MtrunA17_Chr4g0044911 66.102 59 20 0 65 123 96 154 7.67e-21 86.3
Msa0261170 MtrunA17_Chr4g0055801 71.186 59 16 1 64 121 153 211 8.89e-21 87.4
Msa0261170 MtrunA17_Chr4g0055781 69.492 59 17 1 64 121 101 159 1.00e-20 86.3
Msa0261170 MtrunA17_Chr5g0399441 63.333 60 22 0 65 124 28 87 1.03e-20 84.7
Msa0261170 MtrunA17_Chr6g0486701 64.516 62 22 0 65 126 44 105 1.25e-20 85.5
Msa0261170 MtrunA17_Chr1g0195151 62.069 58 22 0 65 122 77 134 1.93e-20 86.3
Msa0261170 MtrunA17_Chr1g0153151 46.429 84 42 1 65 148 44 124 2.70e-20 83.6
Msa0261170 MtrunA17_Chr5g0401871 59.322 59 24 0 65 123 25 83 7.24e-20 82.4
Msa0261170 MtrunA17_Chr2g0324131 66.102 59 20 0 65 123 218 276 7.43e-20 85.9
Msa0261170 MtrunA17_Chr8g0335331 60.317 63 24 1 62 123 122 184 9.15e-20 82.4
Msa0261170 MtrunA17_Chr2g0331231 47.674 86 41 1 43 124 15 100 1.06e-19 82.4
Msa0261170 MtrunA17_Chr7g0265851 65.000 60 21 0 65 124 24 83 1.32e-19 82.4
Msa0261170 MtrunA17_Chr3g0140161 63.333 60 22 0 65 124 43 102 1.49e-19 81.6
Msa0261170 MtrunA17_Chr8g0390091 43.878 98 55 0 29 126 1 98 2.01e-19 82.4
Msa0261170 MtrunA17_Chr8g0340311 60.656 61 24 0 64 124 46 106 2.28e-19 81.6
Msa0261170 MtrunA17_Chr1g0196781 61.017 59 23 0 65 123 152 210 2.81e-19 83.6
Msa0261170 MtrunA17_Chr8g0344961 44.565 92 39 1 65 156 124 203 3.07e-19 84.0
Msa0261170 MtrunA17_Chr8g0383591 61.404 57 22 0 65 121 145 201 3.40e-19 83.2
Msa0261170 MtrunA17_Chr7g0275841 60.345 58 23 0 65 122 28 85 3.65e-19 80.5
Msa0261170 MtrunA17_Chr5g0396911 46.809 94 46 1 65 158 112 201 3.91e-19 82.8
Msa0261170 MtrunA17_Chr8g0335311 60.000 60 23 1 65 123 96 155 4.00e-19 80.9
Msa0261170 MtrunA17_Chr4g0055951 63.333 60 22 0 65 124 74 133 4.02e-19 82.0
Msa0261170 MtrunA17_Chr4g0046161 52.000 75 31 2 53 122 41 115 5.53e-19 78.6
Msa0261170 MtrunA17_Chr2g0283171 60.317 63 24 1 64 125 62 124 9.67e-19 79.0
Msa0261170 MtrunA17_Chr8g0346741 42.424 99 53 2 24 122 2 96 1.72e-18 78.6
Msa0261170 MtrunA17_Chr2g0333011 64.912 57 20 0 65 121 7 63 1.79e-18 78.6
Msa0261170 MtrunA17_Chr5g0432821 58.065 62 26 0 64 125 123 184 2.44e-18 80.5
Msa0261170 MtrunA17_Chr4g0003421 64.912 57 20 0 65 121 40 96 3.52e-18 79.3
Msa0261170 MtrunA17_Chr4g0063751 63.158 57 21 0 65 121 7 63 3.74e-18 78.6
Msa0261170 MtrunA17_Chr2g0316931 56.667 60 26 0 63 122 29 88 5.01e-18 78.2
Msa0261170 MtrunA17_Chr8g0334801 61.017 59 23 0 65 123 52 110 5.26e-18 78.2
Msa0261170 MtrunA17_Chr2g0282621 53.030 66 31 0 60 125 10 75 6.14e-18 77.0
Msa0261170 MtrunA17_Chr4g0062551 40.952 105 43 3 33 129 24 117 1.12e-17 75.5
Msa0261170 MtrunA17_Chr1g0150631 54.839 62 28 0 65 126 38 99 1.16e-17 77.8
Msa0261170 MtrunA17_Chr7g0250731 56.667 60 25 1 65 123 61 120 1.25e-17 77.0
Msa0261170 MtrunA17_Chr2g0283181 52.273 88 38 2 39 125 126 210 1.25e-17 78.6
Msa0261170 MtrunA17_Chr1g0150691 54.839 62 28 0 65 126 22 83 1.30e-17 77.4
Msa0261170 MtrunA17_Chr1g0184081 60.656 61 23 1 63 122 19 79 1.34e-17 75.5
Msa0261170 MtrunA17_Chr1g0196871 62.712 59 21 1 64 121 15 73 2.28e-17 73.6
Msa0261170 MtrunA17_Chr1g0186671 60.563 71 25 2 55 122 7 77 2.35e-17 74.7
Msa0261170 MtrunA17_Chr7g0250721 56.667 60 25 1 65 123 61 120 2.49e-17 76.3
Msa0261170 MtrunA17_Chr2g0301171 56.897 58 25 0 65 122 19 76 3.76e-17 75.9
Msa0261170 MtrunA17_Chr1g0150661 53.226 62 29 0 65 126 35 96 3.90e-17 76.3
Msa0261170 MtrunA17_Chr2g0282651 55.932 59 26 0 63 121 68 126 4.41e-17 76.6
Msa0261170 MtrunA17_Chr7g0250711 55.000 60 26 1 65 123 60 119 4.49e-17 75.5
Msa0261170 MtrunA17_Chr1g0150671 54.839 62 28 0 65 126 46 107 5.05e-17 76.6
Msa0261170 MtrunA17_Chr7g0252381 58.824 68 22 1 65 126 42 109 5.19e-17 76.6
Msa0261170 MtrunA17_Chr1g0186731 52.703 74 31 2 53 122 6 79 5.33e-17 73.9
Msa0261170 MtrunA17_Chr4g0062161 40.952 105 43 3 33 129 24 117 5.79e-17 75.1
Msa0261170 MtrunA17_Chr8g0367911 60.714 56 22 0 65 120 44 99 8.78e-17 76.3
Msa0261170 MtrunA17_Chr6g0486711 57.500 80 33 1 65 144 49 127 9.55e-17 75.5
Msa0261170 MtrunA17_Chr3g0099871 57.895 57 24 0 65 121 27 83 9.82e-17 75.1
Msa0261170 MtrunA17_Chr4g0026881 56.250 64 27 1 59 121 91 154 2.06e-16 74.3
Msa0261170 MtrunA17_Chr3g0126321 60.714 56 22 0 65 120 113 168 2.35e-16 75.9
Msa0261170 MtrunA17_Chr5g0412641 52.778 72 27 1 65 129 46 117 2.37e-16 75.9
Msa0261170 MtrunA17_Chr1g0158971 60.714 56 22 0 65 120 115 170 4.10e-16 75.1
Msa0261170 MtrunA17_Chr8g0335321 53.333 60 27 1 65 123 96 155 5.28e-16 72.8
Msa0261170 MtrunA17_Chr2g0301181 55.172 58 26 0 65 122 19 76 5.60e-16 73.2
Msa0261170 MtrunA17_Chr2g0301191 56.897 58 25 0 65 122 19 76 6.37e-16 72.8
Msa0261170 MtrunA17_Chr4g0057241 53.333 75 32 3 64 138 14 85 6.91e-16 71.6
Msa0261170 MtrunA17_Chr5g0438801 56.140 57 25 0 65 121 51 107 9.05e-16 73.6
Msa0261170 MtrunA17_Chr6g0473941 52.703 74 34 1 65 138 33 105 1.20e-15 72.0
Msa0261170 MtrunA17_Chr7g0261101 59.677 62 24 1 62 122 17 78 1.24e-15 70.5
Msa0261170 MtrunA17_Chr1g0184061 57.143 63 26 1 64 125 76 138 1.39e-15 72.0
Msa0261170 MtrunA17_Chr1g0184031 54.839 62 27 1 60 120 79 140 1.98e-15 71.6
Msa0261170 MtrunA17_Chr5g0438831 56.140 57 25 0 65 121 46 102 2.03e-15 72.4
Msa0261170 MtrunA17_Chr7g0261151 60.656 61 23 1 62 121 17 77 2.26e-15 69.7
Msa0261170 MtrunA17_Chr4g0026931 56.250 64 27 1 59 121 125 188 2.40e-15 72.0
Msa0261170 MtrunA17_Chr1g0183981 59.649 57 22 1 65 120 75 131 2.43e-15 71.2
Msa0261170 MtrunA17_Chr1g0184011 54.839 62 27 1 60 120 79 140 2.67e-15 71.2
Msa0261170 MtrunA17_Chr6g0473961 41.880 117 64 3 41 157 31 143 2.99e-15 70.9
Msa0261170 MtrunA17_Chr8g0387801 49.296 71 36 0 65 135 107 177 3.03e-15 72.4
Msa0261170 MtrunA17_Chr1g0203861 60.714 56 22 0 65 120 44 99 3.57e-15 70.5
Msa0261170 MtrunA17_Chr4g0066931 57.143 56 24 0 65 120 53 108 3.66e-15 72.4
Msa0261170 MtrunA17_Chr3g0131601 49.474 95 41 2 62 154 73 162 3.93e-15 71.2
Msa0261170 MtrunA17_Chr6g0473861 54.839 62 28 0 65 126 63 124 3.98e-15 71.6
Msa0261170 MtrunA17_Chr4g0017851 54.386 57 26 0 65 121 118 174 5.41e-15 71.6
Msa0261170 MtrunA17_Chr6g0461271 43.023 86 47 1 35 120 5 88 5.57e-15 71.6
Msa0261170 MtrunA17_Chr6g0473931 60.714 56 22 0 65 120 33 88 5.89e-15 69.7
Msa0261170 MtrunA17_Chr6g0473881 48.750 80 40 1 41 120 87 165 6.75e-15 71.2
Msa0261170 MtrunA17_Chr7g0253424 49.315 73 37 0 48 120 22 94 6.90e-15 70.9
Msa0261170 MtrunA17_Chr6g0473741 38.136 118 71 2 26 143 28 143 7.15e-15 70.1
Msa0261170 MtrunA17_Chr1g0184071 52.000 75 27 2 55 120 51 125 1.05e-14 68.6
Msa0261170 MtrunA17_Chr7g0261181 51.685 89 37 3 52 139 1 84 1.13e-14 67.4
Msa0261170 MtrunA17_Chr1g0146191 60.938 64 25 0 60 123 42 105 1.25e-14 70.1
Msa0261170 MtrunA17_Chr6g0473971 48.750 80 40 1 41 120 31 109 1.29e-14 69.7
Msa0261170 MtrunA17_Chr6g0473771 40.816 98 51 3 26 120 5 98 1.33e-14 67.0
Msa0261170 MtrunA17_Chr6g0473781 38.655 119 69 3 41 159 34 148 1.39e-14 69.3
Msa0261170 MtrunA17_Chr2g0286161 47.368 76 31 1 45 120 39 105 1.58e-14 70.1
Msa0261170 MtrunA17_Chr5g0396191 42.063 126 57 4 65 178 11 132 1.62e-14 68.6
Msa0261170 MtrunA17_Chr2g0321071 51.389 72 32 3 65 133 47 118 1.81e-14 68.9
Msa0261170 MtrunA17_Chr6g0473981 46.237 93 47 2 65 157 54 143 2.48e-14 68.9
Msa0261170 MtrunA17_Chr8g0350701 57.143 56 24 0 65 120 27 82 3.98e-14 68.9
Msa0261170 MtrunA17_Chr6g0474001 58.929 56 23 0 65 120 54 109 4.54e-14 68.6
Msa0261170 MtrunA17_Chr3g0083501 51.020 49 24 0 73 121 3 51 7.39e-14 63.9
Msa0261170 MtrunA17_Chr5g0396301 49.180 61 29 1 65 123 18 78 8.96e-14 65.9
Msa0261170 MtrunA17_Chr3g0136551 45.833 72 39 0 65 136 65 136 1.33e-13 67.4
Msa0261170 MtrunA17_Chr2g0297331 53.623 69 29 2 55 122 6 72 1.56e-13 64.7
Msa0261170 MtrunA17_Chr1g0170471 62.000 50 18 1 73 121 91 140 1.59e-13 65.5
Msa0261170 MtrunA17_Chr1g0186681 54.839 62 26 1 63 122 17 78 1.71e-13 64.3
Msa0261170 MtrunA17_Chr7g0225131 51.613 62 27 1 65 126 29 87 1.95e-13 63.2
Msa0261170 MtrunA17_Chr3g0129421 62.903 62 22 1 65 125 170 231 2.09e-13 67.4
Msa0261170 MtrunA17_Chr6g0453661 50.769 65 32 0 56 120 29 93 3.79e-13 66.6
Msa0261170 MtrunA17_Chr1g0149331 61.667 60 23 0 62 121 4 63 4.69e-13 64.7
Msa0261170 MtrunA17_Chr7g0217991 55.000 60 27 0 61 120 38 97 4.83e-13 66.6
Msa0261170 MtrunA17_Chr1g0183961 59.677 62 24 1 62 122 24 85 4.89e-13 63.5
Msa0261170 MtrunA17_Chr5g0424051 42.697 89 50 1 41 128 72 160 7.28e-13 65.5
Msa0261170 MtrunA17_Chr8g0378811 50.847 59 29 0 62 120 52 110 7.95e-13 65.1
Msa0261170 MtrunA17_Chr4g0042761 53.333 60 28 0 61 120 44 103 9.24e-13 65.5
Msa0261170 MtrunA17_Chr5g0423811 40.426 94 46 2 38 123 63 154 1.94e-12 64.3
Msa0261170 MtrunA17_Chr3g0137831 55.405 74 29 2 65 137 8 78 2.06e-12 63.2
Msa0261170 MtrunA17_Chr6g0461941 63.333 60 22 0 64 123 19 78 2.66e-12 62.8
Msa0261170 MtrunA17_Chr3g0136541 45.714 70 38 0 67 136 42 111 3.00e-12 63.2
Msa0261170 MtrunA17_Chr5g0396171 50.877 57 28 0 67 123 26 82 3.57e-12 60.1
Msa0261170 MtrunA17_Chr3g0108241 51.316 76 35 2 48 122 99 173 6.32e-12 62.4
Msa0261170 MtrunA17_Chr3g0114761 51.471 68 31 1 59 124 19 86 7.98e-12 61.6
Msa0261170 MtrunA17_Chr5g0396741 64.407 59 21 0 65 123 117 175 1.31e-11 62.0
Msa0261170 MtrunA17_Chr5g0398061 37.607 117 58 3 65 167 49 164 2.36e-11 60.5
Msa0261170 MtrunA17_Chr1g0200931 46.032 63 31 1 65 124 23 85 2.92e-11 58.5
Msa0261170 MtrunA17_Chr5g0398091 37.607 117 58 3 65 167 54 169 4.16e-11 59.7
Msa0261170 MtrunA17_Chr6g0473791 45.070 71 38 1 41 111 34 103 4.34e-11 58.5
Msa0261170 MtrunA17_Chr5g0396181 54.098 61 28 0 63 123 19 79 4.74e-11 59.3
Msa0261170 MtrunA17_Chr8g0345531 42.029 69 36 2 47 112 95 162 4.89e-11 60.5
Msa0261170 MtrunA17_Chr1g0186721 53.333 75 30 2 49 122 5 75 9.44e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261170 AT2G40340.3 56.250 144 44 2 8 132 11 154 1.42e-49 162
Msa0261170 AT2G40340.1 56.250 144 44 2 8 132 11 154 2.20e-49 163
Msa0261170 AT2G40340.6 56.250 144 44 2 8 132 18 161 3.23e-49 163
Msa0261170 AT2G40350.2 58.065 124 48 1 8 127 13 136 1.25e-48 155
Msa0261170 AT2G40350.1 58.065 124 48 1 8 127 6 129 1.79e-48 155
Msa0261170 AT5G05410.2 63.359 131 44 2 4 134 22 148 6.94e-39 135
Msa0261170 AT5G05410.1 63.359 131 44 2 4 134 22 148 1.37e-38 135
Msa0261170 AT5G18450.1 68.675 83 26 0 38 120 7 89 1.23e-37 132
Msa0261170 AT1G75490.1 67.816 87 27 1 35 121 13 98 4.43e-37 127
Msa0261170 AT3G11020.1 49.711 173 77 3 11 180 22 187 1.10e-36 130
Msa0261170 AT2G40340.2 62.500 96 21 1 52 132 1 96 3.74e-35 125
Msa0261170 AT2G40340.5 62.500 96 21 1 52 132 1 96 3.74e-35 125
Msa0261170 AT2G40340.4 62.500 96 21 1 52 132 1 96 3.74e-35 125
Msa0261170 AT2G38340.1 61.682 107 32 2 39 136 44 150 1.72e-32 117
Msa0261170 AT3G57600.1 62.963 81 30 0 43 123 6 86 3.05e-31 114
Msa0261170 AT5G61890.1 52.381 84 32 1 38 121 71 146 2.56e-23 93.6
Msa0261170 AT1G46768.1 52.439 82 36 1 61 139 27 108 5.69e-23 90.1
Msa0261170 AT1G46768.2 52.439 82 36 1 61 139 27 108 5.69e-23 90.1
Msa0261170 AT1G46768.3 52.439 82 36 1 61 139 27 108 6.55e-23 89.7
Msa0261170 AT2G33710.1 67.241 58 19 0 64 121 69 126 7.20e-23 91.7
Msa0261170 AT2G33710.2 67.241 58 19 0 64 121 69 126 7.53e-23 91.7
Msa0261170 AT1G78080.1 62.857 70 26 0 54 123 141 210 1.91e-22 92.8
Msa0261170 AT5G65130.2 67.797 59 19 0 65 123 113 171 2.86e-22 91.3
Msa0261170 AT5G65130.1 67.797 59 19 0 65 123 111 169 3.04e-22 91.3
Msa0261170 AT5G13330.1 48.315 89 42 1 33 121 11 95 3.24e-22 89.7
Msa0261170 AT2G47520.1 49.438 89 39 2 65 151 50 134 3.68e-22 88.6
Msa0261170 AT2G22200.1 67.797 59 19 0 65 123 71 129 4.94e-22 90.1
Msa0261170 AT5G47230.1 57.317 82 32 2 41 121 134 213 5.83e-22 90.9
Msa0261170 AT3G16770.1 45.263 95 45 1 65 152 79 173 1.22e-21 89.0
Msa0261170 AT1G22190.1 64.179 67 21 1 65 131 83 146 2.08e-21 88.6
Msa0261170 AT5G25190.1 70.175 57 17 0 65 121 8 64 2.27e-21 86.7
Msa0261170 AT1G71450.1 43.478 138 63 4 47 178 10 138 2.97e-21 86.3
Msa0261170 AT2G35700.1 63.934 61 22 0 64 124 44 104 5.61e-21 85.9
Msa0261170 AT4G16750.1 52.273 88 37 2 38 124 16 99 1.10e-20 84.7
Msa0261170 AT2G40220.1 69.118 68 21 0 53 120 43 110 1.30e-20 87.4
Msa0261170 AT4G06746.1 61.404 57 22 0 65 121 36 92 1.31e-20 84.0
Msa0261170 AT4G39780.1 66.102 59 20 0 65 123 93 151 3.66e-20 85.5
Msa0261170 AT4G32800.1 60.000 65 26 0 60 124 14 78 4.30e-20 84.3
Msa0261170 AT1G36060.1 67.797 59 19 0 65 123 143 201 5.00e-20 85.9
Msa0261170 AT5G67190.1 57.353 68 28 1 65 131 21 88 6.29e-20 83.2
Msa0261170 AT2G20880.1 60.317 63 25 0 65 127 187 249 1.26e-19 85.1
Msa0261170 AT4G28140.1 55.405 74 33 0 65 138 143 216 1.34e-19 84.3
Msa0261170 AT3G16280.1 61.667 60 23 0 65 124 61 120 1.56e-19 83.2
Msa0261170 AT3G16280.2 61.667 60 23 0 65 124 79 138 1.71e-19 83.6
Msa0261170 AT2G44940.1 56.944 72 29 1 53 124 90 159 1.82e-19 84.0
Msa0261170 AT4G13620.1 62.712 59 22 0 65 123 232 290 2.28e-19 84.7
Msa0261170 AT4G11140.1 54.930 71 32 0 65 135 87 157 2.30e-19 83.6
Msa0261170 AT4G17500.1 67.797 59 18 1 64 121 147 205 2.99e-19 82.8
Msa0261170 AT5G47220.1 67.797 59 18 1 64 121 116 174 3.15e-19 82.4
Msa0261170 AT5G51190.1 59.375 64 25 1 59 121 66 129 3.35e-19 82.0
Msa0261170 AT2G25820.1 63.333 60 22 0 65 124 26 85 3.61e-19 82.0
Msa0261170 AT3G60490.1 63.333 60 22 0 65 124 71 130 5.88e-19 82.0
Msa0261170 AT4G36900.1 57.627 59 25 0 65 123 30 88 7.50e-19 80.5
Msa0261170 AT1G72360.1 51.471 68 33 0 57 124 17 84 8.17e-19 80.9
Msa0261170 AT5G11590.1 49.438 89 39 1 36 124 28 110 1.03e-18 80.9
Msa0261170 AT2G36450.1 66.102 59 19 1 65 122 15 73 1.34e-18 79.3
Msa0261170 AT4G17490.1 45.833 96 41 2 37 121 99 194 1.45e-18 81.3
Msa0261170 AT1G72360.3 51.471 68 33 0 57 124 66 133 1.55e-18 80.9
Msa0261170 AT1G72360.2 51.471 68 33 0 57 124 68 135 1.63e-18 80.9
Msa0261170 AT2G44840.1 50.704 71 34 1 54 123 81 151 1.95e-18 80.1
Msa0261170 AT3G23230.1 53.333 75 34 1 59 132 14 88 2.05e-18 77.8
Msa0261170 AT5G25810.1 60.000 60 24 0 65 124 36 95 2.17e-18 79.7
Msa0261170 AT1G01250.1 39.098 133 71 4 42 167 19 148 2.47e-18 79.0
Msa0261170 AT2G23340.1 57.627 59 25 0 65 123 28 86 2.72e-18 78.6
Msa0261170 AT5G25390.2 61.017 59 23 0 65 123 7 65 3.46e-18 78.6
Msa0261170 AT3G50260.1 55.932 59 26 0 65 123 21 79 4.88e-18 77.4
Msa0261170 AT1G15360.1 63.158 57 21 0 65 121 7 63 5.16e-18 78.2
Msa0261170 AT1G15360.2 63.158 57 21 0 65 121 7 63 5.16e-18 78.2
Msa0261170 AT1G21910.1 56.667 60 26 0 65 124 50 109 7.13e-18 78.6
Msa0261170 AT5G44210.1 47.727 88 44 2 63 149 31 117 1.26e-17 77.4
Msa0261170 AT3G20310.1 57.895 57 24 0 65 121 27 83 1.70e-17 77.8
Msa0261170 AT3G15210.1 55.932 59 26 0 65 123 25 83 2.69e-17 77.0
Msa0261170 AT5G61600.1 56.923 65 26 2 64 126 87 151 3.20e-17 77.0
Msa0261170 AT5G13910.1 55.882 68 24 1 65 126 20 87 4.42e-17 76.3
Msa0261170 AT4G25490.1 66.071 56 19 0 65 120 48 103 5.03e-17 75.9
Msa0261170 AT1G12980.1 46.000 100 49 2 45 139 37 136 5.72e-17 77.4
Msa0261170 AT1G28360.1 55.000 60 27 0 63 122 10 69 6.08e-17 75.1
Msa0261170 AT3G23240.1 47.674 86 30 2 36 120 67 138 6.82e-17 75.9
Msa0261170 AT1G71520.1 40.816 98 51 2 52 145 1 95 8.42e-17 73.9
Msa0261170 AT4G25470.1 46.939 98 44 2 32 122 12 108 1.11e-16 75.1
Msa0261170 AT2G31230.1 61.538 65 23 2 64 127 85 148 1.25e-16 75.5
Msa0261170 AT1G28160.1 49.383 81 41 0 65 145 39 119 1.78e-16 75.1
Msa0261170 AT1G03800.1 44.318 88 47 1 36 123 26 111 1.78e-16 75.1
Msa0261170 AT4G27950.1 58.929 56 23 0 65 120 118 173 1.86e-16 76.3
Msa0261170 AT5G07580.1 57.627 59 24 1 64 121 109 167 2.22e-16 74.3
Msa0261170 AT3G61630.1 58.929 56 23 0 65 120 105 160 3.02e-16 75.5
Msa0261170 AT1G22810.1 52.308 65 29 1 61 123 10 74 3.27e-16 72.4
Msa0261170 AT5G51990.1 64.286 56 20 0 65 120 54 109 3.64e-16 73.9
Msa0261170 AT5G25390.1 59.322 59 21 1 65 123 7 62 5.05e-16 72.8
Msa0261170 AT4G25480.1 60.345 58 23 0 65 122 51 108 6.80e-16 73.2
Msa0261170 AT5G43410.1 59.322 59 23 1 65 122 15 73 7.09e-16 70.9
Msa0261170 AT2G46310.1 56.667 60 26 0 61 120 95 154 7.54e-16 73.9
Msa0261170 AT4G31060.1 47.887 71 36 1 52 122 15 84 9.94e-16 72.0
Msa0261170 AT1G19210.1 47.059 68 36 0 55 122 2 69 1.22e-15 71.6
Msa0261170 AT1G24590.1 62.500 56 21 0 65 120 58 113 1.52e-15 73.6
Msa0261170 AT1G77200.1 62.295 61 23 0 65 125 43 103 2.26e-15 72.0
Msa0261170 AT5G18560.1 57.143 56 24 0 65 120 55 110 2.68e-15 73.2
Msa0261170 AT5G21960.1 38.532 109 47 2 65 153 7 115 2.77e-15 71.2
Msa0261170 AT1G74930.1 50.820 61 30 0 62 122 18 78 3.81e-15 70.5
Msa0261170 AT1G28370.1 54.386 57 26 0 65 121 20 76 4.09e-15 70.1
Msa0261170 AT5G53290.1 57.143 56 24 0 65 120 125 180 4.18e-15 72.4
Msa0261170 AT1G50640.1 54.386 57 26 0 65 121 28 84 5.01e-15 70.9
Msa0261170 AT5G50080.2 60.000 70 25 1 55 121 73 142 5.20e-15 70.9
Msa0261170 AT5G50080.1 59.155 71 26 1 54 121 63 133 5.25e-15 70.9
Msa0261170 AT5G07310.1 65.517 58 20 0 64 121 91 148 5.89e-15 71.2
Msa0261170 AT1G28370.2 54.386 57 26 0 65 121 58 114 6.47e-15 70.1
Msa0261170 AT4G23750.2 57.143 56 24 0 65 120 122 177 7.70e-15 71.6
Msa0261170 AT4G23750.1 57.143 56 24 0 65 120 122 177 7.70e-15 71.6
Msa0261170 AT1G77640.1 54.839 62 28 0 65 126 43 104 8.09e-15 70.5
Msa0261170 AT1G43160.1 64.912 57 20 0 65 121 61 117 1.04e-14 69.3
Msa0261170 AT4G34410.1 62.903 62 23 0 65 126 136 197 1.08e-14 70.5
Msa0261170 AT1G53910.1 41.007 139 75 2 37 168 90 228 1.53e-14 70.9
Msa0261170 AT1G53910.2 41.007 139 75 2 37 168 90 228 1.53e-14 70.9
Msa0261170 AT1G12890.1 50.704 71 32 1 65 132 21 91 1.74e-14 69.3
Msa0261170 AT1G71130.1 58.065 62 21 1 64 120 78 139 2.26e-14 67.8
Msa0261170 AT1G53910.3 45.192 104 57 0 65 168 123 226 2.71e-14 70.1
Msa0261170 AT5G11190.1 43.750 112 56 3 65 176 7 111 3.84e-14 67.8
Msa0261170 AT5G64750.1 56.140 57 24 1 72 127 192 248 3.99e-14 70.1
Msa0261170 AT3G14230.3 64.912 57 20 0 65 121 123 179 5.88e-14 69.3
Msa0261170 AT3G14230.2 64.912 57 20 0 65 121 124 180 6.07e-14 69.3
Msa0261170 AT1G22985.1 46.512 86 41 2 64 144 74 159 6.70e-14 66.6
Msa0261170 AT3G14230.1 64.912 57 20 0 65 121 128 184 6.84e-14 69.3
Msa0261170 AT5G19790.1 50.000 70 35 0 53 122 10 79 7.38e-14 68.2
Msa0261170 AT1G12610.1 44.444 99 50 4 65 161 30 125 8.32e-13 64.7
Msa0261170 AT4G18450.1 52.308 65 29 2 65 127 110 174 1.18e-12 65.5
Msa0261170 AT1G63030.2 42.857 98 53 3 65 161 30 125 2.26e-12 62.8
Msa0261170 AT1G63030.1 42.857 98 53 3 65 161 30 125 2.26e-12 62.8
Msa0261170 AT1G44830.1 53.846 65 29 1 65 128 35 99 2.28e-12 63.5
Msa0261170 AT1G64380.1 64.407 59 21 0 65 123 136 194 2.48e-12 64.7
Msa0261170 AT1G33760.1 53.968 63 29 0 61 123 16 78 4.49e-12 62.0
Msa0261170 AT3G23220.1 51.282 78 31 2 65 141 14 85 1.45e-11 59.7
Msa0261170 AT5G61590.1 59.322 59 23 1 64 121 106 164 1.50e-11 61.2

Find 86 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTTTAACACTGGATT+TGG 0.295520 2_2:+59405991 Msa0261170:three_prime_UTR
TTGGCGAAAGCTTGTGAAAA+AGG 0.300775 2_2:+59405050 Msa0261170:CDS
AGTGAAGAGGTGTGAGAAAT+TGG 0.338423 2_2:-59403397 None:intergenic
ACACCCTTTCTTCGATCCTT+TGG 0.358882 2_2:-59405177 None:intergenic
ACTCCTATCCCTGAGTTATC+TGG 0.383635 2_2:-59405506 None:intergenic
AGTAGAAGACAGTAATGATA+TGG 0.391317 2_2:+59405526 Msa0261170:CDS
TCTCAACTTTCCTAACGTTT+CGG 0.394413 2_2:+59405397 Msa0261170:CDS
TTGGCTGCAACTTTGCGAAC+AGG 0.401300 2_2:-59405158 None:intergenic
AATGTCAATTTCTTTAACAC+TGG 0.403663 2_2:+59405985 Msa0261170:three_prime_UTR
TTCTTCTTTGAAGCTCTCTC+AGG 0.407623 2_2:+59403367 Msa0261170:five_prime_UTR
AGGCTTATCCACATCATTGC+CGG 0.425173 2_2:-59405138 None:intergenic
CTGCTTTATACTTAAGCATA+AGG 0.431779 2_2:-59405558 None:intergenic
TTATGTGTTGTAGTGCTACT+TGG 0.437902 2_2:+59405012 Msa0261170:intron
TTGCTTATGACGAGGCAGCC+AGG 0.450923 2_2:+59405351 Msa0261170:CDS
TGAGTTATCTGGTATTATCA+TGG 0.471291 2_2:-59405495 None:intergenic
TAAGTCCCTGGGTAAGATAC+TGG 0.475551 2_2:+59405082 Msa0261170:CDS
ACAAAACCCTAGTTTCTTGT+CGG 0.478003 2_2:+59403252 Msa0261170:five_prime_UTR
AAAACTAAAATGAACTTGGT+TGG 0.478191 2_2:+59405758 Msa0261170:three_prime_UTR
ATCATTGCCGGCATCAAGTT+GGG 0.479760 2_2:-59405126 None:intergenic
GAGGTGTGAGACAAAGGACT+TGG 0.482842 2_2:+59405243 Msa0261170:CDS
TTGTAAAACTAAAATGAACT+TGG 0.490463 2_2:+59405754 Msa0261170:three_prime_UTR
AAAGGGTGTATGAAAGGTAA+AGG 0.503890 2_2:+59405191 Msa0261170:CDS
GATGACACCGACAAGAAACT+AGG 0.503980 2_2:-59403259 None:intergenic
CATCATTGCCGGCATCAAGT+TGG 0.505346 2_2:-59405127 None:intergenic
TTCTTGCTAATGATCAACTT+AGG 0.507229 2_2:+59405683 Msa0261170:three_prime_UTR
AAGTATAAAGCAGGAGAATG+AGG 0.509355 2_2:+59405568 Msa0261170:CDS
TTGGATTGAATTGCATATGT+TGG 0.511079 2_2:+59405031 Msa0261170:exon
GGAGAATGAGGAAGGTGAGC+CGG 0.511312 2_2:+59405580 Msa0261170:CDS
TGCTTATGACGAGGCAGCCA+GGG 0.511345 2_2:+59405352 Msa0261170:CDS
TGAGCCGGAGATAAGTTAAT+CGG 0.512309 2_2:+59405595 Msa0261170:exon
ACTGCCAAGTGATTTGCATC+TGG 0.512722 2_2:-59405455 None:intergenic
AGGGGATGGATCTAAGTCCC+TGG 0.516262 2_2:+59405070 Msa0261170:CDS
AATCTAGTAACCGAAACGTT+AGG 0.516531 2_2:-59405407 None:intergenic
TACTCCCTCGATTCGGCTCA+CGG 0.520241 2_2:-59405286 None:intergenic
CATAGCCTACTCCCTCGATT+CGG 0.522628 2_2:-59405293 None:intergenic
ATACTTAAGCATAAGGACAT+TGG 0.526606 2_2:-59405551 None:intergenic
ATCTGGTATTATCATGGACT+CGG 0.526869 2_2:-59405489 None:intergenic
GAGGCAGCCAGGGCAATGTA+TGG 0.529105 2_2:+59405362 Msa0261170:CDS
TATTGCAACAGCTAATCAAA+AGG 0.529508 2_2:-59405729 None:intergenic
AACTCGCGGTGTAATTATAG+AGG 0.530701 2_2:+59405224 Msa0261170:CDS
GCAGCCAAAGGATCGAAGAA+AGG 0.536603 2_2:+59405173 Msa0261170:CDS
CTTATGCTTAAGTATAAAGC+AGG 0.544467 2_2:+59405559 Msa0261170:CDS
ATAAAGCAGGAGAATGAGGA+AGG 0.546959 2_2:+59405572 Msa0261170:CDS
TATAATGCCCAACTTGATGC+CGG 0.548013 2_2:+59405119 Msa0261170:CDS
GAAATCCGTGAGCCGAATCG+AGG 0.551198 2_2:+59405281 Msa0261170:CDS
AAATCCGTGAGCCGAATCGA+GGG 0.551988 2_2:+59405282 Msa0261170:CDS
ATGATAATACCAGATAACTC+AGG 0.552682 2_2:+59405497 Msa0261170:CDS
AGGTGTGAGACAAAGGACTT+GGG 0.555224 2_2:+59405244 Msa0261170:CDS
TTCTCCAGATGCAAATCACT+TGG 0.556031 2_2:+59405451 Msa0261170:CDS
ATACCAGATAACTCAGGGAT+AGG 0.558390 2_2:+59405503 Msa0261170:CDS
TAATATCTTGTGATCTGCCC+TGG 0.558557 2_2:+59405897 Msa0261170:three_prime_UTR
TGGGTAAGATACTGGCAAGA+TGG 0.562078 2_2:+59405090 Msa0261170:CDS
CAGCCAAAGGATCGAAGAAA+GGG 0.570936 2_2:+59405174 Msa0261170:CDS
TCGAAGAAAGGGTGTATGAA+AGG 0.574846 2_2:+59405185 Msa0261170:CDS
ATTATAGAGGTGTGAGACAA+AGG 0.574888 2_2:+59405237 Msa0261170:CDS
ATCTTGCCAGTATCTTACCC+AGG 0.580110 2_2:-59405088 None:intergenic
TATGAAAGGTAAAGGAGGGC+CGG 0.582521 2_2:+59405199 Msa0261170:CDS
GTAAGATACTGGCAAGATGG+AGG 0.583870 2_2:+59405093 Msa0261170:CDS
AAGAGCAGCACCAATGGCAG+TGG 0.584735 2_2:-59405330 None:intergenic
CGAATCGAGGGAGTAGGCTA+TGG 0.587506 2_2:+59405294 Msa0261170:CDS
GGGGATGGATCTAAGTCCCT+GGG 0.593610 2_2:+59405071 Msa0261170:CDS
ACTTGATGCCGGCAATGATG+TGG 0.594869 2_2:+59405130 Msa0261170:CDS
TAAGATACTGGCAAGATGGA+GGG 0.596457 2_2:+59405094 Msa0261170:CDS
GGAACCGATTAACTTATCTC+CGG 0.598177 2_2:-59405599 None:intergenic
GTTCGCAAAGTTGCAGCCAA+AGG 0.599394 2_2:+59405161 Msa0261170:CDS
ACGAGAACCATACATTGCCC+TGG 0.603747 2_2:-59405369 None:intergenic
GTGAGCCGAATCGAGGGAGT+AGG 0.603966 2_2:+59405288 Msa0261170:CDS
TACTAGAGCACTCTGATCTG+TGG 0.604104 2_2:+59405928 Msa0261170:three_prime_UTR
AACGTTAGGAAAGTTGAGAC+GGG 0.606145 2_2:-59405393 None:intergenic
CGAGGGAGTAGGCTATGGCT+AGG 0.607993 2_2:+59405299 Msa0261170:CDS
AAACGTTAGGAAAGTTGAGA+CGG 0.611794 2_2:-59405394 None:intergenic
TGATAATACCAGATAACTCA+GGG 0.620246 2_2:+59405498 Msa0261170:CDS
ATGACACCGACAAGAAACTA+GGG 0.621562 2_2:-59403258 None:intergenic
TTTCTCACACCTCTTCACTC+AGG 0.624805 2_2:+59403401 Msa0261170:five_prime_UTR
GGGTGTATGAAAGGTAAAGG+AGG 0.630003 2_2:+59405194 Msa0261170:CDS
TCTTGCCAGTATCTTACCCA+GGG 0.645583 2_2:-59405087 None:intergenic
TGCTGCTCTTGCTTATGACG+AGG 0.649251 2_2:+59405343 Msa0261170:CDS
ATAAGCAAGAGCAGCACCAA+TGG 0.652121 2_2:-59405336 None:intergenic
GATAGATTACCTGAGTGAAG+AGG 0.655724 2_2:-59403410 None:intergenic
GGTGTATGAAAGGTAAAGGA+GGG 0.659313 2_2:+59405195 Msa0261170:CDS
AAGGAGGGCCGGAAAACTCG+CGG 0.659892 2_2:+59405210 Msa0261170:CDS
CAAAATGTACATCATCAACA+AGG 0.664178 2_2:-59405620 None:intergenic
GGTGTGAGACAAAGGACTTG+GGG 0.669400 2_2:+59405245 Msa0261170:CDS
TCTCGAAAACGATGATGTAG+CGG 0.675731 2_2:+59403223 Msa0261170:five_prime_UTR
GTGTGAGACAAAGGACTTGG+GGG 0.684279 2_2:+59405246 Msa0261170:CDS
AGTGTATAGTGTATACCTAG+AGG 0.701995 2_2:-59405871 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGATAAACATGAAAAAT+CGG - chr2_2:59404198-59404217 None:intergenic 15.0%
!! TTGAAGAATGAAAAGAAAAT+GGG - chr2_2:59403441-59403460 None:intergenic 20.0%
!! TTTGAAGAATGAAAAGAAAA+TGG - chr2_2:59403442-59403461 None:intergenic 20.0%
!!! TCTTTTCATTCTTCAAATTA+TGG + chr2_2:59403445-59403464 Msa0261170:intron 20.0%
!!! CTTTTCATTCTTCAAATTAT+GGG + chr2_2:59403446-59403465 Msa0261170:intron 20.0%
!! TTAAAAGAAACATGTTTAGA+GGG + chr2_2:59403942-59403961 Msa0261170:intron 20.0%
!!! TTCATGTCACAATTTATTTT+TGG + chr2_2:59404255-59404274 Msa0261170:intron 20.0%
!! ATGTGTAATAATTGTGATAA+GGG - chr2_2:59404480-59404499 None:intergenic 20.0%
!!! TGTTCTGAAATTTTTTCTTA+TGG + chr2_2:59404505-59404524 Msa0261170:intron 20.0%
!! ATAAATCACTCAATTCATAT+TGG - chr2_2:59404937-59404956 None:intergenic 20.0%
!! AAAAATCTGAAAATGTTAAG+AGG - chr2_2:59404981-59405000 None:intergenic 20.0%
!! TTGTAAAACTAAAATGAACT+TGG + chr2_2:59405754-59405773 Msa0261170:three_prime_UTR 20.0%
! AGAATCAATGTGAAAAAGAT+GGG - chr2_2:59403347-59403366 None:intergenic 25.0%
! AAGAATCAATGTGAAAAAGA+TGG - chr2_2:59403348-59403367 None:intergenic 25.0%
! AATGAAAAGAAAATGGGAAA+AGG - chr2_2:59403435-59403454 None:intergenic 25.0%
!! AACACACTTTTGCAAAATTA+CGG - chr2_2:59403610-59403629 None:intergenic 25.0%
!! AAAATTGAAAAGTGAGTTGA+AGG + chr2_2:59403674-59403693 Msa0261170:intron 25.0%
! AAGGTAAAGTGATTTATGTT+TGG + chr2_2:59403693-59403712 Msa0261170:intron 25.0%
!! CTTTAAGTTAGAATCAATTC+TGG + chr2_2:59403751-59403770 Msa0261170:intron 25.0%
!! TAAACATGTTTCTTTTAACC+CGG - chr2_2:59403940-59403959 None:intergenic 25.0%
! GTTAAAAGAAACATGTTTAG+AGG + chr2_2:59403941-59403960 Msa0261170:intron 25.0%
! TAAAAGAAACATGTTTAGAG+GGG + chr2_2:59403943-59403962 Msa0261170:intron 25.0%
! TGATCATTAATGTATGATGA+AGG + chr2_2:59403968-59403987 Msa0261170:intron 25.0%
!! AGAAAAATCTGAAATGTCAA+TGG - chr2_2:59404122-59404141 None:intergenic 25.0%
! GATGTGTAATAATTGTGATA+AGG - chr2_2:59404481-59404500 None:intergenic 25.0%
! AAAACTAAAATGAACTTGGT+TGG + chr2_2:59405758-59405777 Msa0261170:three_prime_UTR 25.0%
! AATGTCAATTTCTTTAACAC+TGG + chr2_2:59405985-59406004 Msa0261170:three_prime_UTR 25.0%
! AATTTCTTTAACACTGGATT+TGG + chr2_2:59405991-59406010 Msa0261170:three_prime_UTR 25.0%
! ATGCTGTTTGTACTTTGAAT+TGG + chr2_2:59403547-59403566 Msa0261170:intron 30.0%
TAAGTTAGAATCAATTCTGG+AGG + chr2_2:59403754-59403773 Msa0261170:intron 30.0%
GCAAAATCAATTCTACTTGA+CGG + chr2_2:59403776-59403795 Msa0261170:intron 30.0%
! TGTAAGTTTGATTCCACTTT+TGG - chr2_2:59403855-59403874 None:intergenic 30.0%
TCATTAATGTATGATGAAGG+TGG + chr2_2:59403971-59403990 Msa0261170:intron 30.0%
AATGACCAACACATTAATGA+AGG + chr2_2:59404000-59404019 Msa0261170:intron 30.0%
CATAACCTTCATTAATGTGT+TGG - chr2_2:59404008-59404027 None:intergenic 30.0%
CAACTTGTCAGATTATACAA+AGG - chr2_2:59404397-59404416 None:intergenic 30.0%
TGTAATAATTGTGATAAGGG+AGG - chr2_2:59404477-59404496 None:intergenic 30.0%
!!! GACTATTTTGATCTTCACAA+TGG + chr2_2:59404532-59404551 Msa0261170:intron 30.0%
TCTTCTGCTACAATTCATAT+TGG - chr2_2:59404904-59404923 None:intergenic 30.0%
TTGGATTGAATTGCATATGT+TGG + chr2_2:59405031-59405050 Msa0261170:exon 30.0%
TGAGTTATCTGGTATTATCA+TGG - chr2_2:59405498-59405517 None:intergenic 30.0%
ATGATAATACCAGATAACTC+AGG + chr2_2:59405497-59405516 Msa0261170:CDS 30.0%
TGATAATACCAGATAACTCA+GGG + chr2_2:59405498-59405517 Msa0261170:CDS 30.0%
AGTAGAAGACAGTAATGATA+TGG + chr2_2:59405526-59405545 Msa0261170:CDS 30.0%
ATACTTAAGCATAAGGACAT+TGG - chr2_2:59405554-59405573 None:intergenic 30.0%
CTGCTTTATACTTAAGCATA+AGG - chr2_2:59405561-59405580 None:intergenic 30.0%
CTTATGCTTAAGTATAAAGC+AGG + chr2_2:59405559-59405578 Msa0261170:CDS 30.0%
CAAAATGTACATCATCAACA+AGG - chr2_2:59405623-59405642 None:intergenic 30.0%
! ATGATGTACATTTTGCTTAC+TGG + chr2_2:59405628-59405647 Msa0261170:three_prime_UTR 30.0%
! TGATGTACATTTTGCTTACT+GGG + chr2_2:59405629-59405648 Msa0261170:three_prime_UTR 30.0%
TTCTTGCTAATGATCAACTT+AGG + chr2_2:59405683-59405702 Msa0261170:three_prime_UTR 30.0%
TATTGCAACAGCTAATCAAA+AGG - chr2_2:59405732-59405751 None:intergenic 30.0%
!!! TACATTTTGTTTTTGCCTCT+AGG + chr2_2:59405856-59405875 Msa0261170:three_prime_UTR 30.0%
! GCTCTAGTATAATTTTACCA+GGG - chr2_2:59405917-59405936 None:intergenic 30.0%
! TGCTCTAGTATAATTTTACC+AGG - chr2_2:59405918-59405937 None:intergenic 30.0%
!! TTGAATAGTTCCATTTTTGC+TGG + chr2_2:59405961-59405980 Msa0261170:three_prime_UTR 30.0%
ATTGACATTTCCAGCAAAAA+TGG - chr2_2:59405974-59405993 None:intergenic 30.0%
!!! AAGAAACTAGGGTTTTGTTC+GGG - chr2_2:59403250-59403269 None:intergenic 35.0%
!!! CAAGAAACTAGGGTTTTGTT+CGG - chr2_2:59403251-59403270 None:intergenic 35.0%
ACAAAACCCTAGTTTCTTGT+CGG + chr2_2:59403252-59403271 Msa0261170:five_prime_UTR 35.0%
GAAAAAGATGGGTGCATATT+GGG - chr2_2:59403336-59403355 None:intergenic 35.0%
TGAAAAAGATGGGTGCATAT+TGG - chr2_2:59403337-59403356 None:intergenic 35.0%
TTGATATCATGCCGAAATCA+CGG + chr2_2:59403577-59403596 Msa0261170:intron 35.0%
! ACACTTTTGCAAAATTACGG+TGG - chr2_2:59403607-59403626 None:intergenic 35.0%
GGAGTCAAAAATGATTCTTG+AGG - chr2_2:59403831-59403850 None:intergenic 35.0%
!! ATTTTTGACTCCTCCAAAAG+TGG + chr2_2:59403839-59403858 Msa0261170:intron 35.0%
!! AAGTTTGATTCCACTTTTGG+AGG - chr2_2:59403852-59403871 None:intergenic 35.0%
ATCTAACTGTGATACCTAAC+CGG + chr2_2:59403918-59403937 Msa0261170:intron 35.0%
! ATGTTTCTTTTAACCCGGTT+AGG - chr2_2:59403935-59403954 None:intergenic 35.0%
ATGTATGATGAAGGTGGTTA+TGG + chr2_2:59403977-59403996 Msa0261170:intron 35.0%
TGAATAAGAACAACCAGTTC+AGG + chr2_2:59404328-59404347 Msa0261170:intron 35.0%
ACATCGAACAACTTCTGTAT+TGG + chr2_2:59404441-59404460 Msa0261170:intron 35.0%
CAACTTCTGTATTGGAAGTT+TGG + chr2_2:59404449-59404468 Msa0261170:intron 35.0%
GTGAAGTGATAATTCTGTCA+TGG - chr2_2:59404604-59404623 None:intergenic 35.0%
ATTTCCTATCCCACTGAATT+TGG - chr2_2:59404847-59404866 None:intergenic 35.0%
TTCAGTGGGATAGGAAATTA+TGG + chr2_2:59404849-59404868 Msa0261170:intron 35.0%
! TTATGTGTTGTAGTGCTACT+TGG + chr2_2:59405012-59405031 Msa0261170:intron 35.0%
! AAAGGGTGTATGAAAGGTAA+AGG + chr2_2:59405191-59405210 Msa0261170:CDS 35.0%
! ATTATAGAGGTGTGAGACAA+AGG + chr2_2:59405237-59405256 Msa0261170:CDS 35.0%
AAACGTTAGGAAAGTTGAGA+CGG - chr2_2:59405397-59405416 None:intergenic 35.0%
TCTCAACTTTCCTAACGTTT+CGG + chr2_2:59405397-59405416 Msa0261170:CDS 35.0%
AATCTAGTAACCGAAACGTT+AGG - chr2_2:59405410-59405429 None:intergenic 35.0%
ATCTGGTATTATCATGGACT+CGG - chr2_2:59405492-59405511 None:intergenic 35.0%
AAGTATAAAGCAGGAGAATG+AGG + chr2_2:59405568-59405587 Msa0261170:CDS 35.0%
!! TGCTTACTGGGATTTTGATA+TGG + chr2_2:59405641-59405660 Msa0261170:three_prime_UTR 35.0%
AGTGTATAGTGTATACCTAG+AGG - chr2_2:59405874-59405893 None:intergenic 35.0%
TCTCGAAAACGATGATGTAG+CGG + chr2_2:59403223-59403242 Msa0261170:five_prime_UTR 40.0%
!!! AGAAACTAGGGTTTTGTTCG+GGG - chr2_2:59403249-59403268 None:intergenic 40.0%
ATGACACCGACAAGAAACTA+GGG - chr2_2:59403261-59403280 None:intergenic 40.0%
!! TTCTTCTTTGAAGCTCTCTC+AGG + chr2_2:59403367-59403386 Msa0261170:five_prime_UTR 40.0%
! AGTGAAGAGGTGTGAGAAAT+TGG - chr2_2:59403400-59403419 None:intergenic 40.0%
GATAGATTACCTGAGTGAAG+AGG - chr2_2:59403413-59403432 None:intergenic 40.0%
CAGTTAGATTGCCGAAATCA+CGG - chr2_2:59403907-59403926 None:intergenic 40.0%
TCTAACTGTGATACCTAACC+GGG + chr2_2:59403919-59403938 Msa0261170:intron 40.0%
TTGTCAGTGTCATGCTATAC+TGG + chr2_2:59404028-59404047 Msa0261170:intron 40.0%
! TGCTATACTGGTTAGCGAAT+TGG + chr2_2:59404040-59404059 Msa0261170:intron 40.0%
! GCTATACTGGTTAGCGAATT+GGG + chr2_2:59404041-59404060 Msa0261170:intron 40.0%
GTCAGACAATTGAATCGACA+AGG - chr2_2:59404289-59404308 None:intergenic 40.0%
ACTGGTTGTTCTTATTCACG+AGG - chr2_2:59404326-59404345 None:intergenic 40.0%
TAATTCTGTCATGGTCAGAG+TGG - chr2_2:59404595-59404614 None:intergenic 40.0%
TTGTAGGCTAGAATGGGATA+TGG + chr2_2:59404651-59404670 Msa0261170:intron 40.0%
TTTCACGCAGTAAACAGTCT+CGG + chr2_2:59404701-59404720 Msa0261170:intron 40.0%
GCTGTTAATCAGAGATCAGA+TGG + chr2_2:59404723-59404742 Msa0261170:intron 40.0%
AGTTACTGCACCAAATTCAG+TGG + chr2_2:59404834-59404853 Msa0261170:intron 40.0%
GTTACTGCACCAAATTCAGT+GGG + chr2_2:59404835-59404854 Msa0261170:intron 40.0%
TTGGCGAAAGCTTGTGAAAA+AGG + chr2_2:59405050-59405069 Msa0261170:CDS 40.0%
TGGCGAAAGCTTGTGAAAAA+GGG + chr2_2:59405051-59405070 Msa0261170:CDS 40.0%
AAAGCTTGTGAAAAAGGGGA+TGG + chr2_2:59405056-59405075 Msa0261170:CDS 40.0%
TAAGATACTGGCAAGATGGA+GGG + chr2_2:59405094-59405113 Msa0261170:CDS 40.0%
TATAATGCCCAACTTGATGC+CGG + chr2_2:59405119-59405138 Msa0261170:CDS 40.0%
! TCGAAGAAAGGGTGTATGAA+AGG + chr2_2:59405185-59405204 Msa0261170:CDS 40.0%
GGTGTATGAAAGGTAAAGGA+GGG + chr2_2:59405195-59405214 Msa0261170:CDS 40.0%
! TAATTACACCGCGAGTTTTC+CGG - chr2_2:59405221-59405240 None:intergenic 40.0%
AACTCGCGGTGTAATTATAG+AGG + chr2_2:59405224-59405243 Msa0261170:CDS 40.0%
AACGTTAGGAAAGTTGAGAC+GGG - chr2_2:59405396-59405415 None:intergenic 40.0%
TTCTCCAGATGCAAATCACT+TGG + chr2_2:59405451-59405470 Msa0261170:CDS 40.0%
ATACCAGATAACTCAGGGAT+AGG + chr2_2:59405503-59405522 Msa0261170:CDS 40.0%
ATAAAGCAGGAGAATGAGGA+AGG + chr2_2:59405572-59405591 Msa0261170:CDS 40.0%
TGAGCCGGAGATAAGTTAAT+CGG + chr2_2:59405595-59405614 Msa0261170:exon 40.0%
GGAACCGATTAACTTATCTC+CGG - chr2_2:59405602-59405621 None:intergenic 40.0%
TAATATCTTGTGATCTGCCC+TGG + chr2_2:59405897-59405916 Msa0261170:three_prime_UTR 40.0%
GATGACACCGACAAGAAACT+AGG - chr2_2:59403262-59403281 None:intergenic 45.0%
TTTCTCACACCTCTTCACTC+AGG + chr2_2:59403401-59403420 Msa0261170:five_prime_UTR 45.0%
ATATCATGCCGAAATCACGG+TGG + chr2_2:59403580-59403599 Msa0261170:intron 45.0%
TATCATGCCGAAATCACGGT+GGG + chr2_2:59403581-59403600 Msa0261170:intron 45.0%
GAGCTTTCGCAAAACCACTA+TGG + chr2_2:59403877-59403896 Msa0261170:intron 45.0%
ACTATGGCTCACCGTGATTT+CGG + chr2_2:59403893-59403912 Msa0261170:intron 45.0%
TTCAGGCATATCGTGGTCTA+TGG + chr2_2:59404345-59404364 Msa0261170:intron 45.0%
CACACTGCATCGAAAAAGAG+TGG + chr2_2:59404621-59404640 Msa0261170:intron 45.0%
GCATCGAAAAAGAGTGGTGT+CGG + chr2_2:59404627-59404646 Msa0261170:intron 45.0%
!! AAAGAGTGGTGTCGGTTTGT+AGG + chr2_2:59404635-59404654 Msa0261170:intron 45.0%
!! TGTCGGTTTGTAGGCTAGAA+TGG + chr2_2:59404644-59404663 Msa0261170:intron 45.0%
!! GTCGGTTTGTAGGCTAGAAT+GGG + chr2_2:59404645-59404664 Msa0261170:intron 45.0%
TGCACCAAATTCAGTGGGAT+AGG + chr2_2:59404840-59404859 Msa0261170:intron 45.0%
GGCGAAAGCTTGTGAAAAAG+GGG + chr2_2:59405052-59405071 Msa0261170:CDS 45.0%
TAAGTCCCTGGGTAAGATAC+TGG + chr2_2:59405082-59405101 Msa0261170:CDS 45.0%
TCTTGCCAGTATCTTACCCA+GGG - chr2_2:59405090-59405109 None:intergenic 45.0%
ATCTTGCCAGTATCTTACCC+AGG - chr2_2:59405091-59405110 None:intergenic 45.0%
TGGGTAAGATACTGGCAAGA+TGG + chr2_2:59405090-59405109 Msa0261170:CDS 45.0%
GTAAGATACTGGCAAGATGG+AGG + chr2_2:59405093-59405112 Msa0261170:CDS 45.0%
ATCATTGCCGGCATCAAGTT+GGG - chr2_2:59405129-59405148 None:intergenic 45.0%
AGGCTTATCCACATCATTGC+CGG - chr2_2:59405141-59405160 None:intergenic 45.0%
CAGCCAAAGGATCGAAGAAA+GGG + chr2_2:59405174-59405193 Msa0261170:CDS 45.0%
ACACCCTTTCTTCGATCCTT+TGG - chr2_2:59405180-59405199 None:intergenic 45.0%
GGGTGTATGAAAGGTAAAGG+AGG + chr2_2:59405194-59405213 Msa0261170:CDS 45.0%
TATGAAAGGTAAAGGAGGGC+CGG + chr2_2:59405199-59405218 Msa0261170:CDS 45.0%
AGGTGTGAGACAAAGGACTT+GGG + chr2_2:59405244-59405263 Msa0261170:CDS 45.0%
ACAAAGGACTTGGGGGAAAT+GGG + chr2_2:59405253-59405272 Msa0261170:CDS 45.0%
! GGTACTTTTACCACTGCCAT+TGG + chr2_2:59405320-59405339 Msa0261170:CDS 45.0%
ATAAGCAAGAGCAGCACCAA+TGG - chr2_2:59405339-59405358 None:intergenic 45.0%
! ACTGCCAAGTGATTTGCATC+TGG - chr2_2:59405458-59405477 None:intergenic 45.0%
ACTCCTATCCCTGAGTTATC+TGG - chr2_2:59405509-59405528 None:intergenic 45.0%
! TACTAGAGCACTCTGATCTG+TGG + chr2_2:59405928-59405947 Msa0261170:three_prime_UTR 45.0%
GAAATCACGGTGAGCCATAG+TGG - chr2_2:59403894-59403913 None:intergenic 50.0%
CAACCAGTTCAGGCATATCG+TGG + chr2_2:59404338-59404357 Msa0261170:intron 50.0%
AGACCACGATATGCCTGAAC+TGG - chr2_2:59404344-59404363 None:intergenic 50.0%
GGGATATGGATTTCCTGCTG+TGG + chr2_2:59404665-59404684 Msa0261170:intron 50.0%
ACGTGTGCTTTAACCACAGC+AGG - chr2_2:59404681-59404700 None:intergenic 50.0%
CATCATTGCCGGCATCAAGT+TGG - chr2_2:59405130-59405149 None:intergenic 50.0%
ACTTGATGCCGGCAATGATG+TGG + chr2_2:59405130-59405149 Msa0261170:CDS 50.0%
TTGGCTGCAACTTTGCGAAC+AGG - chr2_2:59405161-59405180 None:intergenic 50.0%
GTTCGCAAAGTTGCAGCCAA+AGG + chr2_2:59405161-59405180 Msa0261170:CDS 50.0%
GCAGCCAAAGGATCGAAGAA+AGG + chr2_2:59405173-59405192 Msa0261170:CDS 50.0%
GAGGTGTGAGACAAAGGACT+TGG + chr2_2:59405243-59405262 Msa0261170:CDS 50.0%
GGTGTGAGACAAAGGACTTG+GGG + chr2_2:59405245-59405264 Msa0261170:CDS 50.0%
GTGTGAGACAAAGGACTTGG+GGG + chr2_2:59405246-59405265 Msa0261170:CDS 50.0%
GACAAAGGACTTGGGGGAAA+TGG + chr2_2:59405252-59405271 Msa0261170:CDS 50.0%
AAATCCGTGAGCCGAATCGA+GGG + chr2_2:59405282-59405301 Msa0261170:CDS 50.0%
CATAGCCTACTCCCTCGATT+CGG - chr2_2:59405296-59405315 None:intergenic 50.0%
TGCTGCTCTTGCTTATGACG+AGG + chr2_2:59405343-59405362 Msa0261170:CDS 50.0%
ACGAGAACCATACATTGCCC+TGG - chr2_2:59405372-59405391 None:intergenic 50.0%
AGGGGATGGATCTAAGTCCC+TGG + chr2_2:59405070-59405089 Msa0261170:CDS 55.0%
GGGGATGGATCTAAGTCCCT+GGG + chr2_2:59405071-59405090 Msa0261170:CDS 55.0%
GAAATCCGTGAGCCGAATCG+AGG + chr2_2:59405281-59405300 Msa0261170:CDS 55.0%
!! TACTCCCTCGATTCGGCTCA+CGG - chr2_2:59405289-59405308 None:intergenic 55.0%
CGAATCGAGGGAGTAGGCTA+TGG + chr2_2:59405294-59405313 Msa0261170:CDS 55.0%
AAGAGCAGCACCAATGGCAG+TGG - chr2_2:59405333-59405352 None:intergenic 55.0%
TTGCTTATGACGAGGCAGCC+AGG + chr2_2:59405351-59405370 Msa0261170:CDS 55.0%
TGCTTATGACGAGGCAGCCA+GGG + chr2_2:59405352-59405371 Msa0261170:CDS 55.0%
GGAGAATGAGGAAGGTGAGC+CGG + chr2_2:59405580-59405599 Msa0261170:CDS 55.0%
ACGGTGGCCCACCGTGATTT+CGG - chr2_2:59403591-59403610 None:intergenic 60.0%
AAGGAGGGCCGGAAAACTCG+CGG + chr2_2:59405210-59405229 Msa0261170:CDS 60.0%
GTGAGCCGAATCGAGGGAGT+AGG + chr2_2:59405288-59405307 Msa0261170:CDS 60.0%
CGAGGGAGTAGGCTATGGCT+AGG + chr2_2:59405299-59405318 Msa0261170:CDS 60.0%
GAGGCAGCCAGGGCAATGTA+TGG + chr2_2:59405362-59405381 Msa0261170:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59403212 59406014 59403212 ID=Msa0261170;Name=Msa0261170
chr2_2 mRNA 59403212 59406014 59403212 ID=Msa0261170-mRNA-1;Parent=Msa0261170;Name=Msa0261170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|0|0.5|2|401|188
chr2_2 exon 59403212 59403422 59403212 ID=Msa0261170-mRNA-1:exon:18308;Parent=Msa0261170-mRNA-1
chr2_2 exon 59405025 59406014 59405025 ID=Msa0261170-mRNA-1:exon:18309;Parent=Msa0261170-mRNA-1
chr2_2 five_prime_UTR 59403212 59403422 59403212 ID=Msa0261170-mRNA-1:five_prime_utr;Parent=Msa0261170-mRNA-1
chr2_2 five_prime_UTR 59405025 59405046 59405025 ID=Msa0261170-mRNA-1:five_prime_utr;Parent=Msa0261170-mRNA-1
chr2_2 CDS 59405047 59405613 59405047 ID=Msa0261170-mRNA-1:cds;Parent=Msa0261170-mRNA-1
chr2_2 three_prime_UTR 59405614 59406014 59405614 ID=Msa0261170-mRNA-1:three_prime_utr;Parent=Msa0261170-mRNA-1
Gene Sequence

>Msa0261170

ATGTTGGCGAAAGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAGATGGAGGGAATATAATGCCCAACTTGATGCCGGCAATGATGTGGATAAGCCTGTTCGCAAAGTTGCAGCCAAAGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCGGAAAACTCGCGGTGTAATTATAGAGGTGTGAGACAAAGGACTTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCGAATCGAGGGAGTAGGCTATGGCTAGGTACTTTTACCACTGCCATTGGTGCTGCTCTTGCTTATGACGAGGCAGCCAGGGCAATGTATGGTTCTCGTGCCCGTCTCAACTTTCCTAACGTTTCGGTTACTAGATTCTCTGATGAATCTTCAAACGATTCTCCAGATGCAAATCACTTGGCAGTATCAACAAATACCGAGTCCATGATAATACCAGATAACTCAGGGATAGGAGTAGAAGACAGTAATGATATGGAACCAATGTCCTTATGCTTAAGTATAAAGCAGGAGAATGAGGAAGGTGAGCCGGAGATAAGTTAA
Protein sequence

>Msa0261170

MLAKACEKGDGSKSLGKILARWREYNAQLDAGNDVDKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGSRLWLGTFTTAIGAALAYDEAARAMYGSRARLNFPNVSVTRFSDESSNDSPDANHLAVSTNTESMIIPDNSGIGVEDSNDMEPMSLCLSIKQENEEGEPEIS*