AlfalfaGEDB | Msa0261170

M. sativa cultivar zhongmu-4 / Msa0261170

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261170	XP_003597059.2	96.809	188	6	0	1	188	1	188	3.12e-131	375

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261170	sp\|Q8LFR2\|DRE2C_ARATH	56.250	144	44	2	8	132	11	154	2.17e-48	163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261170	G7IRK1	96.809	188	6	0	1	188	1	188	1.49e-131	375

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TFs/TRs:

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Gene ID	Type	Classification
Msa0261170	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0261170	0.817618	3.003488e-52	-8.615850e-47
Msa0002680	Msa0261170	0.809923	1.488569e-50	-8.615850e-47
Msa0003720	Msa0261170	0.833280	5.838329e-56	-8.615850e-47
Msa0004540	Msa0261170	0.809801	1.580798e-50	-8.615850e-47
Msa0012940	Msa0261170	0.850865	1.287737e-60	-8.615850e-47
Msa0016540	Msa0261170	0.837860	4.050801e-57	-8.615850e-47
Msa0024710	Msa0261170	0.825638	4.202365e-54	-8.615850e-47
Msa0025720	Msa0261170	0.800117	1.675461e-48	-8.615850e-47
Msa0029630	Msa0261170	0.817876	2.626438e-52	-8.615850e-47
Msa0033880	Msa0261170	0.852861	3.495159e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261170	MtrunA17_Chr2g0323171	96.809	188	6	0	1	188	1	188	2.87e-135	375
Msa0261170	MtrunA17_Chr4g0023411	63.874	191	64	2	1	186	1	191	2.35e-69	209
Msa0261170	MtrunA17_Chr5g0437671	70.968	124	36	0	4	127	24	147	5.32e-45	153
Msa0261170	MtrunA17_Chr7g0243431	59.677	124	37	3	9	120	18	140	2.96e-41	145
Msa0261170	MtrunA17_Chr3g0142081	61.062	113	41	2	29	139	1	112	9.01e-35	122
Msa0261170	MtrunA17_Chr1g0189941	66.279	86	28	1	45	129	4	89	1.67e-33	117
Msa0261170	MtrunA17_Chr7g0257911	61.628	86	33	0	40	125	6	91	2.77e-33	120
Msa0261170	MtrunA17_Chr1g0155751	67.416	89	29	0	37	125	11	99	2.89e-33	119
Msa0261170	MtrunA17_Chr5g0437371	67.647	68	22	0	53	120	54	121	1.57e-26	103
Msa0261170	MtrunA17_Chr7g0221471	44.792	96	49	2	62	155	48	141	3.00e-23	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261170	AT2G40340.3	56.250	144	44	2	8	132	11	154	1.42e-49	162
Msa0261170	AT2G40340.1	56.250	144	44	2	8	132	11	154	2.20e-49	163
Msa0261170	AT2G40340.6	56.250	144	44	2	8	132	18	161	3.23e-49	163
Msa0261170	AT2G40350.2	58.065	124	48	1	8	127	13	136	1.25e-48	155
Msa0261170	AT2G40350.1	58.065	124	48	1	8	127	6	129	1.79e-48	155
Msa0261170	AT5G05410.2	63.359	131	44	2	4	134	22	148	6.94e-39	135
Msa0261170	AT5G05410.1	63.359	131	44	2	4	134	22	148	1.37e-38	135
Msa0261170	AT5G18450.1	68.675	83	26	0	38	120	7	89	1.23e-37	132
Msa0261170	AT1G75490.1	67.816	87	27	1	35	121	13	98	4.43e-37	127
Msa0261170	AT3G11020.1	49.711	173	77	3	11	180	22	187	1.10e-36	130

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Find 86 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAAATGAACTTGGT+TGG	0.478191	2_2:+59405758	Msa0261170:three_prime_UTR
AAACGTTAGGAAAGTTGAGA+CGG	0.611794	2_2:-59405394	None:intergenic
AAAGGGTGTATGAAAGGTAA+AGG	0.503890	2_2:+59405191	Msa0261170:CDS
AAATCCGTGAGCCGAATCGA+GGG	0.551988	2_2:+59405282	Msa0261170:CDS
AACGTTAGGAAAGTTGAGAC+GGG	0.606145	2_2:-59405393	None:intergenic
AACTCGCGGTGTAATTATAG+AGG	0.530701	2_2:+59405224	Msa0261170:CDS
AAGAGCAGCACCAATGGCAG+TGG	0.584735	2_2:-59405330	None:intergenic
AAGGAGGGCCGGAAAACTCG+CGG	0.659892	2_2:+59405210	Msa0261170:CDS
AAGTATAAAGCAGGAGAATG+AGG	0.509355	2_2:+59405568	Msa0261170:CDS
AATCTAGTAACCGAAACGTT+AGG	0.516531	2_2:-59405407	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGTTAGAATCAATTCTGG+AGG	+	chr2_2:59403754-59403773	Msa0261170:intron	30.0%
GCAAAATCAATTCTACTTGA+CGG	+	chr2_2:59403776-59403795	Msa0261170:intron	30.0%
TCATTAATGTATGATGAAGG+TGG	+	chr2_2:59403971-59403990	Msa0261170:intron	30.0%
AATGACCAACACATTAATGA+AGG	+	chr2_2:59404000-59404019	Msa0261170:intron	30.0%
CATAACCTTCATTAATGTGT+TGG	-	chr2_2:59404008-59404027	None:intergenic	30.0%
CAACTTGTCAGATTATACAA+AGG	-	chr2_2:59404397-59404416	None:intergenic	30.0%
TGTAATAATTGTGATAAGGG+AGG	-	chr2_2:59404477-59404496	None:intergenic	30.0%
TCTTCTGCTACAATTCATAT+TGG	-	chr2_2:59404904-59404923	None:intergenic	30.0%
TTGGATTGAATTGCATATGT+TGG	+	chr2_2:59405031-59405050	Msa0261170:exon	30.0%
TGAGTTATCTGGTATTATCA+TGG	-	chr2_2:59405498-59405517	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	59403212	59406014	59403212	ID=Msa0261170;Name=Msa0261170
chr2_2	mRNA	59403212	59406014	59403212	ID=Msa0261170-mRNA-1;Parent=Msa0261170;Name=Msa0261170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233\|1\|1\|1\|0\|0.5\|2\|401\|188
chr2_2	exon	59403212	59403422	59403212	ID=Msa0261170-mRNA-1:exon:18308;Parent=Msa0261170-mRNA-1
chr2_2	exon	59405025	59406014	59405025	ID=Msa0261170-mRNA-1:exon:18309;Parent=Msa0261170-mRNA-1
chr2_2	five_prime_UTR	59403212	59403422	59403212	ID=Msa0261170-mRNA-1:five_prime_utr;Parent=Msa0261170-mRNA-1
chr2_2	five_prime_UTR	59405025	59405046	59405025	ID=Msa0261170-mRNA-1:five_prime_utr;Parent=Msa0261170-mRNA-1
chr2_2	CDS	59405047	59405613	59405047	ID=Msa0261170-mRNA-1:cds;Parent=Msa0261170-mRNA-1
chr2_2	three_prime_UTR	59405614	59406014	59405614	ID=Msa0261170-mRNA-1:three_prime_utr;Parent=Msa0261170-mRNA-1

Gene Sequence

>Msa0261170

ATGTTGGCGAAAGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAGATGGAGGGAATATAATGCCCAACTTGATGCCGGCAATGATGTGGATAAGCCTGTTCGCAAAGTTGCAGCCAAAGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCGGAAAACTCGCGGTGTAATTATAGAGGTGTGAGACAAAGGACTTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCGAATCGAGGGAGTAGGCTATGGCTAGGTACTTTTACCACTGCCATTGGTGCTGCTCTTGCTTATGACGAGGCAGCCAGGGCAATGTATGGTTCTCGTGCCCGTCTCAACTTTCCTAACGTTTCGGTTACTAGATTCTCTGATGAATCTTCAAACGATTCTCCAGATGCAAATCACTTGGCAGTATCAACAAATACCGAGTCCATGATAATACCAGATAACTCAGGGATAGGAGTAGAAGACAGTAATGATATGGAACCAATGTCCTTATGCTTAAGTATAAAGCAGGAGAATGAGGAAGGTGAGCCGGAGATAAGTTAA

Protein sequence

>Msa0261170

MLAKACEKGDGSKSLGKILARWREYNAQLDAGNDVDKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGSRLWLGTFTTAIGAALAYDEAARAMYGSRARLNFPNVSVTRFSDESSNDSPDANHLAVSTNTESMIIPDNSGIGVEDSNDMEPMSLCLSIKQENEEGEPEIS*