AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0305780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305780 MtrunA17_Chr2g0334051 94.809 366 6 1 1 353 1 366 0.0 707
Msa0305780 MtrunA17_Chr1g0209971 55.556 396 133 7 1 353 1 396 2.64e-136 393
Msa0305780 MtrunA17_Chr7g0214981 51.979 379 147 6 1 353 1 370 4.91e-120 351
Msa0305780 MtrunA17_Chr1g0146801 94.805 77 4 0 1 77 1 77 9.31e-47 155
Msa0305780 MtrunA17_Chr7g0226581 94.737 76 4 0 1 76 205 280 2.38e-44 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305780 AT1G79650.2 67.838 370 97 6 1 353 1 365 9.81e-178 498
Msa0305780 AT1G79650.1 66.489 376 98 6 1 353 1 371 5.15e-177 496
Msa0305780 AT1G79650.4 63.980 397 97 7 1 353 1 395 7.60e-174 489
Msa0305780 AT1G16190.1 63.684 380 99 10 1 353 1 368 1.49e-161 457
Msa0305780 AT1G79650.3 61.968 376 95 7 1 353 1 351 9.77e-159 449
Msa0305780 AT1G16190.2 62.185 357 96 10 24 353 1 345 3.38e-145 414
Msa0305780 AT5G38470.1 55.959 386 128 10 1 353 1 377 4.16e-132 382
Msa0305780 AT3G02540.3 49.282 418 147 8 1 353 1 418 7.14e-127 370
Msa0305780 AT3G02540.1 49.642 419 145 9 1 353 1 419 1.22e-126 370
Msa0305780 AT5G38470.2 54.769 325 106 9 1 292 1 317 2.39e-103 307
Msa0305780 AT3G02540.2 45.151 299 102 8 1 237 1 299 1.35e-68 218
Msa0305780 AT5G16090.1 46.067 89 42 1 1 83 1 89 1.43e-19 85.1
Msa0305780 AT5G16090.1 44.444 99 51 3 250 347 74 169 1.63e-17 79.7

Find 125 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCAGGAGACAATTTC+TGG 0.118069 2_3:-63784520 Msa0305780:intron
ATCCGTTACTCCTCTCCTTT+GGG 0.242686 2_3:+63783036 None:intergenic
TGGACATGGGTGGTGGCAGC+TGG 0.265592 2_3:-63784932 Msa0305780:CDS
GTCACTACCGGAGTTGTTCC+TGG 0.267181 2_3:-63784673 Msa0305780:CDS
ATCTTCCCTGATTTAGGCTT+TGG 0.268135 2_3:-63783118 Msa0305780:three_prime_UTR
CCTGTTTCAGTTGGATTACT+TGG 0.271776 2_3:+63784700 None:intergenic
GCAGACTATTCAACAACTTA+TGG 0.276186 2_3:-63784952 Msa0305780:CDS
ATTCCATTCGATTCTGATTC+CGG 0.281791 2_3:-63788030 Msa0305780:five_prime_UTR
CAAAATCATTAGTAAATAAA+TGG 0.283916 2_3:+63783175 None:intergenic
TTAGCTATCTTCCCTGATTT+AGG 0.287134 2_3:-63783124 Msa0305780:three_prime_UTR
TCTGGTGTTGGCACAGTTAT+AGG 0.298020 2_3:+63786147 None:intergenic
TCTATTGCAGCCTGTACTTC+AGG 0.312035 2_3:-63784248 Msa0305780:intron
ACAGCAATTTCTGCTGCTTC+AGG 0.324791 2_3:+63784739 None:intergenic
AATCCGTTACTCCTCTCCTT+TGG 0.328916 2_3:+63783035 None:intergenic
TGGGTGGTGGCAGCTGGGAC+AGG 0.346817 2_3:-63784926 Msa0305780:CDS
CAGGAGACAATTTCTGGTGC+TGG 0.348931 2_3:-63784514 Msa0305780:CDS
CCGATTGCCTCCTGCTCAGC+TGG 0.353647 2_3:+63783608 None:intergenic
ATATTCAAGGGAGACGAGTT+AGG 0.365109 2_3:+63784646 None:intergenic
GAGGAACCAAAGCCTAAATC+AGG 0.376114 2_3:+63783112 None:intergenic
ATTGGCAGCCAACTACTTAC+TGG 0.376662 2_3:-63783360 Msa0305780:CDS
GCTGCTTCAAATTTAGTTGC+TGG 0.382013 2_3:-63784987 Msa0305780:CDS
ATCAGAATCGAATGGAATAA+TGG 0.382127 2_3:+63788035 None:intergenic
AAACCACCCTCCTTGCAAAA+AGG 0.386993 2_3:+63783267 None:intergenic
TCTTGTTGTCATGCTTAGTA+AGG 0.396216 2_3:-63787682 Msa0305780:intron
TCACTACCGGAGTTGTTCCT+GGG 0.402891 2_3:-63784672 Msa0305780:CDS
ATAGTAATGTACAGGGGAAA+AGG 0.405477 2_3:+63782993 None:intergenic
CCAAGTAATCCAACTGAAAC+AGG 0.407427 2_3:-63784700 Msa0305780:CDS
TTAGATACCTGGAGAATTTG+TGG 0.408356 2_3:+63784338 None:intergenic
ACAATTTCTGGTGCTGGAGC+TGG 0.411957 2_3:-63784508 Msa0305780:CDS
ATGTGGTAGAGTTTCTGATT+TGG 0.412768 2_3:-63783212 Msa0305780:three_prime_UTR
TCTGGTGCTGGAGCTGGAGC+TGG 0.428394 2_3:-63784502 Msa0305780:CDS
TGTACTACAGGTGTGGAATC+TGG 0.428565 2_3:+63786129 None:intergenic
AGCACGAAGAGCACGATTGA+CGG 0.441378 2_3:+63784899 None:intergenic
CAGAGTTCATCCTTCTGATT+CGG 0.444243 2_3:-63787942 Msa0305780:intron
AAGAATATTGAAGACATTCA+AGG 0.452792 2_3:-63787807 Msa0305780:CDS
TGACATGCAGCTAGAGGCTA+TGG 0.454971 2_3:-63783438 Msa0305780:intron
AGACAAAAGCCATACATTGT+AGG 0.455071 2_3:+63785982 None:intergenic
GATGAACTCTGATTTCGAAA+TGG 0.460278 2_3:+63787954 None:intergenic
TAATGTGACGCCAGCTGAGC+AGG 0.461283 2_3:-63783618 Msa0305780:CDS
CCAGCTGAGCAGGAGGCAAT+CGG 0.461594 2_3:-63783608 Msa0305780:CDS
AGAGAAGAGAAGAGCGTGGT+GGG 0.469050 2_3:-63788102 Msa0305780:five_prime_UTR
GACAATAAAGTCTCTGAAGA+TGG 0.470434 2_3:-63787708 Msa0305780:CDS
GAGTAACGGATTGTGGAGTT+AGG 0.474994 2_3:-63783024 Msa0305780:three_prime_UTR
AGTGTTACTACAGATACTTA+TGG 0.475618 2_3:-63785014 Msa0305780:CDS
TAGTAATGTACAGGGGAAAA+GGG 0.480348 2_3:+63782994 None:intergenic
CTGTTTCAGTTGGATTACTT+GGG 0.481500 2_3:+63784701 None:intergenic
CAACTCATCTCCTGCAGTTG+TGG 0.483741 2_3:-63786007 Msa0305780:CDS
GTGACCCCACCTGTTTCAGT+TGG 0.484296 2_3:+63784691 None:intergenic
AACTACTTACTGGAAAATGC+TGG 0.492726 2_3:-63783350 Msa0305780:CDS
TCCCTTGAATATGTTTCCAC+AGG 0.499007 2_3:-63784635 Msa0305780:intron
CTGACTGACTGACACCGATC+CGG 0.499585 2_3:+63788011 None:intergenic
CTTCTTGAGGAACAATCCCC+AGG 0.503164 2_3:-63784470 Msa0305780:intron
TACCTGGAGAATTTGTGGAT+TGG 0.503302 2_3:+63784343 None:intergenic
AGCAGCAGAAATTGCTGTAC+CGG 0.508726 2_3:-63784734 Msa0305780:CDS
CTCACAGTGAAGACTTTGAA+AGG 0.508732 2_3:-63787980 Msa0305780:CDS
GTAGAGTTTCTGATTTGGAT+TGG 0.510419 2_3:-63783207 Msa0305780:three_prime_UTR
GAAAGTATACGACTATTGCT+AGG 0.510851 2_3:-63788069 Msa0305780:five_prime_UTR
CTGGTTCGCTTGACTTCTTG+AGG 0.511578 2_3:-63784483 Msa0305780:CDS
ACTCACTGAGTCTGTACTAC+AGG 0.513693 2_3:+63786117 None:intergenic
TTTCCGAGCTCCTGAAGTAC+AGG 0.521041 2_3:+63784238 None:intergenic
AGGAGAGGAGTAACGGATTG+TGG 0.524303 2_3:-63783031 Msa0305780:three_prime_UTR
TACCTGTGGAAACATATTCA+AGG 0.524366 2_3:+63784633 None:intergenic
GGGTGGTGGCAGCTGGGACA+GGG 0.526645 2_3:-63784925 Msa0305780:CDS
TCTTTCTAGGGAAATTTATG+TGG 0.530069 2_3:-63783229 Msa0305780:three_prime_UTR
AAGTAATCTACAGCACGCTC+TGG 0.531024 2_3:+63784864 None:intergenic
ATTGTAGGTGCCACAACTGC+AGG 0.532602 2_3:+63785997 None:intergenic
ACTACTTACTGGAAAATGCT+GGG 0.533868 2_3:-63783349 Msa0305780:CDS
TACTACAGATACTTATGGAC+AGG 0.538234 2_3:-63785009 Msa0305780:CDS
ATCAGCAATTGTTGTCCGCA+TGG 0.538362 2_3:+63787771 None:intergenic
ACCTGTGGAAACATATTCAA+GGG 0.538673 2_3:+63784634 None:intergenic
GGACATGGGTGGTGGCAGCT+GGG 0.540658 2_3:-63784931 Msa0305780:CDS
TTACTTGGGTATTGAGCAGC+CGG 0.541551 2_3:+63784715 None:intergenic
TATTCAAGGGAGACGAGTTA+GGG 0.546347 2_3:+63784647 None:intergenic
TCACCCTTCAGTACCGTCCA+TGG 0.546504 2_3:+63784147 None:intergenic
ATCCAATCCACAAATTCTCC+AGG 0.549169 2_3:-63784345 Msa0305780:intron
GAACCCATGGACGGTACTGA+AGG 0.549758 2_3:-63784151 Msa0305780:CDS
CAACTTATGGACATGGGTGG+TGG 0.550778 2_3:-63784939 Msa0305780:CDS
ATGTGACCGTGATGAGCAAT+TGG 0.553039 2_3:-63783378 Msa0305780:CDS
GAGCTCGGAAAGCAAAATCC+AGG 0.561167 2_3:-63784226 Msa0305780:CDS
GAAACAGGTGGGGTCACTAC+CGG 0.561305 2_3:-63784685 Msa0305780:CDS
CACCCTTCAGTACCGTCCAT+GGG 0.562359 2_3:+63784148 None:intergenic
TCAGCAATTGTTGTCCGCAT+GGG 0.565758 2_3:+63787772 None:intergenic
GAGAAGAGAAGAGAAGAGCG+TGG 0.566820 2_3:-63788106 Msa0305780:five_prime_UTR
TCCCCAAAGGAGAGGAGTAA+CGG 0.567196 2_3:-63783038 Msa0305780:three_prime_UTR
AAGAGAAGAGAAGAGCGTGG+TGG 0.567267 2_3:-63788103 Msa0305780:five_prime_UTR
TATTGAAGACATTCAAGGAA+AGG 0.576284 2_3:-63787802 Msa0305780:CDS
TCACAGTGAAGACTTTGAAA+GGG 0.581575 2_3:-63787979 Msa0305780:CDS
AGGAACCAAAGCCTAAATCA+GGG 0.583656 2_3:+63783113 None:intergenic
AAAGTATACGACTATTGCTA+GGG 0.584949 2_3:-63788068 Msa0305780:five_prime_UTR
ATGTACAGGGGAAAAGGGAG+AGG 0.587334 2_3:+63782999 None:intergenic
GTTTCAAGCATTGCGGACAA+TGG 0.588792 2_3:-63784372 Msa0305780:CDS
TATTCAACAACTTATGGACA+TGG 0.590819 2_3:-63784946 Msa0305780:CDS
ATTCGATTCTGATTCCGGAT+CGG 0.592622 2_3:-63788025 Msa0305780:five_prime_UTR
CAACAATTGCTGATTCACAA+TGG 0.594059 2_3:-63787762 Msa0305780:CDS
TCAGTTGATAAATGAACCCA+TGG 0.600530 2_3:-63784164 Msa0305780:CDS
CTGAGCAGGAGGCAATCGGA+AGG 0.602554 2_3:-63783604 Msa0305780:CDS
TCAATAAGTCTCAAGAGACC+TGG 0.604931 2_3:+63784208 None:intergenic
CAGCCTGTACTTCAGGAGCT+CGG 0.605573 2_3:-63784241 Msa0305780:CDS
GGTGTTGGCACAGTTATAGG+TGG 0.606530 2_3:+63786150 None:intergenic
CTGAGTCTGTACTACAGGTG+TGG 0.617878 2_3:+63786122 None:intergenic
TGATAGAGCCTCTGTCATAG+AGG 0.619305 2_3:-63783411 Msa0305780:CDS
GACATGCAGCTAGAGGCTAT+GGG 0.619380 2_3:-63783437 Msa0305780:intron
TCCGTTACTCCTCTCCTTTG+GGG 0.621506 2_3:+63783037 None:intergenic
AACCCATGGACGGTACTGAA+GGG 0.627966 2_3:-63784150 Msa0305780:intron
GGAGACGAGTTAGGGACCCC+AGG 0.628070 2_3:+63784655 None:intergenic
TGTGACGCCAGCTGAGCAGG+AGG 0.630237 2_3:-63783615 Msa0305780:CDS
GATCCGGAATCAGAATCGAA+TGG 0.630640 2_3:+63788027 None:intergenic
CTACTTACTGGAAAATGCTG+GGG 0.630947 2_3:-63783348 Msa0305780:CDS
GGCGTCACATTAACAGCATG+AGG 0.631358 2_3:+63783629 None:intergenic
GTAATCCAACTGAAACAGGT+GGG 0.636270 2_3:-63784696 Msa0305780:CDS
AGTAATCCAACTGAAACAGG+TGG 0.636970 2_3:-63784697 Msa0305780:CDS
TTGATAAATGAACCCATGGA+CGG 0.638539 2_3:-63784160 Msa0305780:CDS
AACATACATACCGAATCAGA+AGG 0.642123 2_3:+63787932 None:intergenic
AGGGACCCCAGGAACAACTC+CGG 0.643664 2_3:+63784666 None:intergenic
TGGCTGCCAATTGCTCATCA+CGG 0.645634 2_3:+63783372 None:intergenic
ATTCAACAACTTATGGACAT+GGG 0.649122 2_3:-63784945 Msa0305780:CDS
TGAGCAGGAGGCAATCGGAA+GGG 0.655930 2_3:-63783603 Msa0305780:intron
TAATCCAACTGAAACAGGTG+GGG 0.656148 2_3:-63784695 Msa0305780:CDS
ATATTTAGTTTCAAGCATTG+CGG 0.659936 2_3:-63784379 Msa0305780:intron
ACAGGTGTGGAATCTGGTGT+TGG 0.666566 2_3:+63786135 None:intergenic
CAACAACTTATGGACATGGG+TGG 0.667629 2_3:-63784942 Msa0305780:CDS
CACTACCGGAGTTGTTCCTG+GGG 0.671383 2_3:-63784671 Msa0305780:CDS
AGTTATAGGTGGATTGCTAG+CGG 0.692438 2_3:+63786161 None:intergenic
GGAAAGGATAATTACCCATG+CGG 0.728873 2_3:-63787786 Msa0305780:CDS
AAAACAATAGTAATGTACAG+GGG 0.750821 2_3:+63782987 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTGAATGAATATT+GGG + chr2_3:63783257-63783276 None:intergenic 10.0%
!! AGGTATTATTATTATTATTA+TGG - chr2_3:63783459-63783478 Msa0305780:intron 10.0%
!! TTAGAATGTTATATATAATT+AGG + chr2_3:63783622-63783641 None:intergenic 10.0%
!!! TTCTATTATAAATAACTTTT+CGG - chr2_3:63787082-63787101 Msa0305780:intron 10.0%
!! AAAAAGAAGAAAAGAAAAAA+AGG - chr2_3:63782984-63783003 Msa0305780:three_prime_UTR 15.0%
!! AAAAGAAGAAAAGAAAAAAA+GGG - chr2_3:63782985-63783004 Msa0305780:three_prime_UTR 15.0%
!! AAGAATGTTAATAAAAAAAG+CGG + chr2_3:63783218-63783237 None:intergenic 15.0%
!! CAAAAAAATTGAATGAATAT+TGG + chr2_3:63783258-63783277 None:intergenic 15.0%
!! ATCTAAATTACTTTCAATTT+AGG - chr2_3:63783494-63783513 Msa0305780:intron 15.0%
!! TCTAAATTACTTTCAATTTA+GGG - chr2_3:63783495-63783514 Msa0305780:intron 15.0%
!! AATAATAAACATACAATACA+AGG - chr2_3:63783755-63783774 Msa0305780:intron 15.0%
!!! CTCATTTTTTAATATCTTTT+TGG - chr2_3:63784884-63784903 Msa0305780:CDS 15.0%
!!! TTTTCGTAACTTATTTTATT+TGG - chr2_3:63785071-63785090 Msa0305780:intron 15.0%
!! ATTAATTATAATATTAGACC+AGG + chr2_3:63785322-63785341 None:intergenic 15.0%
!!! ATGAACACTATTTTAATTTA+GGG + chr2_3:63785985-63786004 None:intergenic 15.0%
!!! TATGAACACTATTTTAATTT+AGG + chr2_3:63785986-63786005 None:intergenic 15.0%
!! TTTAACAATTATTTATATGC+AGG - chr2_3:63786354-63786373 Msa0305780:intron 15.0%
!! TTAACAATTATTTATATGCA+GGG - chr2_3:63786355-63786374 Msa0305780:intron 15.0%
!! GGTAAAAATAATAATTTGAA+TGG - chr2_3:63786507-63786526 Msa0305780:intron 15.0%
!!! TCTCCATTTATTTTTATAAA+TGG - chr2_3:63787278-63787297 Msa0305780:intron 15.0%
!! TCTCCATTTATAAAAATAAA+TGG + chr2_3:63787284-63787303 None:intergenic 15.0%
!!! ATTTATTTTTATAAATGGAG+AGG - chr2_3:63787283-63787302 Msa0305780:intron 15.0%
!! CAAAATCATTAGTAAATAAA+TGG + chr2_3:63787949-63787968 None:intergenic 15.0%
!!! ATTTACTAATGATTTTGTAT+TGG - chr2_3:63787952-63787971 Msa0305780:CDS 15.0%
!!! GTTTTGTTATTATCAGATAA+TGG - chr2_3:63783283-63783302 Msa0305780:three_prime_UTR 20.0%
!! CTAAATTACTTTCAATTTAG+GGG - chr2_3:63783496-63783515 Msa0305780:intron 20.0%
!! TCTTTAATTATTGAGTATGA+TGG - chr2_3:63784172-63784191 Msa0305780:CDS 20.0%
!!! AGAAATTATTTTTTCCTTCA+GGG + chr2_3:63784647-63784666 None:intergenic 20.0%
!!! TAGAAATTATTTTTTCCTTC+AGG + chr2_3:63784648-63784667 None:intergenic 20.0%
!! ACGTAGAATATAAATTTAGT+TGG - chr2_3:63784751-63784770 Msa0305780:intron 20.0%
!! TACGAAAAAACATAAGTTTA+TGG + chr2_3:63785059-63785078 None:intergenic 20.0%
!!! TGTATTACTGATTATAAGAA+TGG + chr2_3:63785260-63785279 None:intergenic 20.0%
!! GAGAAAAATAATTGAATAGA+TGG + chr2_3:63785357-63785376 None:intergenic 20.0%
!! ATTATTATTGAACAGAACTT+TGG + chr2_3:63785754-63785773 None:intergenic 20.0%
!! ATCAAATAAGATAAATCACA+AGG + chr2_3:63786330-63786349 None:intergenic 20.0%
!!! CAAATTATTATTTTTACCTG+TGG + chr2_3:63786505-63786524 None:intergenic 20.0%
!! TTGAAACTAATTAATGATGT+TGG - chr2_3:63787195-63787214 Msa0305780:intron 20.0%
!! TGAAACTAATTAATGATGTT+GGG - chr2_3:63787196-63787215 Msa0305780:intron 20.0%
!!! TATTAGAGATAATTTTGATC+AGG - chr2_3:63787455-63787474 Msa0305780:intron 20.0%
!! ATAAGGTAAATCAATTGAAA+TGG + chr2_3:63787608-63787627 None:intergenic 20.0%
!!! TCAATTTCATTTTTTTGCAA+AGG + chr2_3:63787632-63787651 None:intergenic 20.0%
!! AAAAACAATAGTAATGTACA+GGG + chr2_3:63788138-63788157 None:intergenic 20.0%
! AAGAATATTGAAGACATTCA+AGG - chr2_3:63783314-63783333 Msa0305780:three_prime_UTR 25.0%
! ATTAAACAACTTATAAGTGG+AGG + chr2_3:63783546-63783565 None:intergenic 25.0%
! TCCACTTATAAGTTGTTTAA+TGG - chr2_3:63783545-63783564 Msa0305780:intron 25.0%
! TATAAGAATTTAATGCAGCA+TGG - chr2_3:63783717-63783736 Msa0305780:intron 25.0%
!!! TCCTTAAATCCTTTTTTTGA+AGG - chr2_3:63783927-63783946 Msa0305780:intron 25.0%
!!! CCTTAAATCCTTTTTTTGAA+GGG - chr2_3:63783928-63783947 Msa0305780:intron 25.0%
!! AATTCGAATCCTTTTTCTAA+AGG - chr2_3:63783961-63783980 Msa0305780:intron 25.0%
!! ATTCGAATCCTTTTTCTAAA+GGG - chr2_3:63783962-63783981 Msa0305780:intron 25.0%
!! AATTCAAATCCTCTTTTTGA+AGG - chr2_3:63783995-63784014 Msa0305780:intron 25.0%
!! ATTCAAATCCTCTTTTTGAA+GGG - chr2_3:63783996-63784015 Msa0305780:intron 25.0%
! AACTGAACATTACTCTTAAA+AGG + chr2_3:63784041-63784060 None:intergenic 25.0%
! TAACAACATTGAAGTAAAGT+AGG + chr2_3:63784112-63784131 None:intergenic 25.0%
!!! GTTTTATTGCTATGTACTTT+AGG - chr2_3:63784148-63784167 Msa0305780:intron 25.0%
!! TATACCACTATAGCATTTTA+GGG - chr2_3:63784284-63784303 Msa0305780:intron 25.0%
!!! TGTTTTTTGGGATCTAATTT+AGG + chr2_3:63784699-63784718 None:intergenic 25.0%
! TTATATTCTACGTCCTAAAT+TGG + chr2_3:63784744-63784763 None:intergenic 25.0%
! AGACAAAATCTACATAAAGA+TGG + chr2_3:63785219-63785238 None:intergenic 25.0%
! ATTCTTGATGCTAAAAGTTA+TGG - chr2_3:63785279-63785298 Msa0305780:intron 25.0%
!! TTTTCTCTCTCAAAACTATA+AGG - chr2_3:63785370-63785389 Msa0305780:intron 25.0%
! TTTCTCTCTCAAAACTATAA+GGG - chr2_3:63785371-63785390 Msa0305780:intron 25.0%
!!! AATTTAATTTTACCATGACC+TGG + chr2_3:63785409-63785428 None:intergenic 25.0%
! AGGTCATGGTAAAATTAAAT+TGG - chr2_3:63785408-63785427 Msa0305780:intron 25.0%
! GGTCATGGTAAAATTAAATT+GGG - chr2_3:63785409-63785428 Msa0305780:intron 25.0%
!! TCTATTCTTCATTTTAGACT+AGG + chr2_3:63785873-63785892 None:intergenic 25.0%
!! TTTAGGGTGTAACTATAATT+AGG + chr2_3:63785969-63785988 None:intergenic 25.0%
! ACATTGAAATGTATTTCAGA+AGG + chr2_3:63786078-63786097 None:intergenic 25.0%
! GAAACTAAATATGCAGAATA+TGG + chr2_3:63786734-63786753 None:intergenic 25.0%
!! ATATTTAGTTTCAAGCATTG+CGG - chr2_3:63786742-63786761 Msa0305780:intron 25.0%
! AAAATAGATAGTTAGATACC+TGG + chr2_3:63786797-63786816 None:intergenic 25.0%
! ATGATTGTAAAAAGCAAAGA+TGG + chr2_3:63787041-63787060 None:intergenic 25.0%
!! TATAATAGAAGCATGACTAT+GGG + chr2_3:63787072-63787091 None:intergenic 25.0%
!! TTATAATAGAAGCATGACTA+TGG + chr2_3:63787073-63787092 None:intergenic 25.0%
! TACACACAAAATATAGATGT+GGG + chr2_3:63787240-63787259 None:intergenic 25.0%
! ATACACACAAAATATAGATG+TGG + chr2_3:63787241-63787260 None:intergenic 25.0%
! TAAAAATGAATCAGCACATA+TGG + chr2_3:63787659-63787678 None:intergenic 25.0%
! CAAAAACTATGAATCATTGT+AGG + chr2_3:63787821-63787840 None:intergenic 25.0%
!! ATGATTCATAGTTTTTGTTC+AGG - chr2_3:63787824-63787843 Msa0305780:CDS 25.0%
!! AATTTTTCTTCTGTCTTTCT+AGG - chr2_3:63787879-63787898 Msa0305780:intron 25.0%
!! ATTTTTCTTCTGTCTTTCTA+GGG - chr2_3:63787880-63787899 Msa0305780:intron 25.0%
! AAAACAATAGTAATGTACAG+GGG + chr2_3:63788137-63788156 None:intergenic 25.0%
! GAAAAACAATAGTAATGTAC+AGG + chr2_3:63788139-63788158 None:intergenic 25.0%
AAAGTATACGACTATTGCTA+GGG - chr2_3:63783053-63783072 Msa0305780:three_prime_UTR 30.0%
ATCAGAATCGAATGGAATAA+TGG + chr2_3:63783089-63783108 None:intergenic 30.0%
TATTGAAGACATTCAAGGAA+AGG - chr2_3:63783319-63783338 Msa0305780:exon 30.0%
GCCATTAAACAACTTATAAG+TGG + chr2_3:63783549-63783568 None:intergenic 30.0%
ATACACTGAAATCCTAATAG+CGG + chr2_3:63783904-63783923 None:intergenic 30.0%
CCCTTCAAAAAAAGGATTTA+AGG + chr2_3:63783931-63783950 None:intergenic 30.0%
CATTTACACCCTTCAAAAAA+AGG + chr2_3:63783939-63783958 None:intergenic 30.0%
! CATTTACACCCTTTAGAAAA+AGG + chr2_3:63783973-63783992 None:intergenic 30.0%
AAAATGCTATAGTGGTATAG+CGG + chr2_3:63784283-63784302 None:intergenic 30.0%
! CTATACCACTATAGCATTTT+AGG - chr2_3:63784283-63784302 Msa0305780:intron 30.0%
! ATACCACTATAGCATTTTAG+GGG - chr2_3:63784285-63784304 Msa0305780:intron 30.0%
ATACCTCTAGCAAAACTATA+GGG - chr2_3:63784355-63784374 Msa0305780:CDS 30.0%
! TTCTCAACAGATTAGGTTTT+AGG - chr2_3:63784406-63784425 Msa0305780:intron 30.0%
AACAGTAAAATGGTAGATTG+TGG + chr2_3:63784803-63784822 None:intergenic 30.0%
CTGCAAATAGAACAGTAAAA+TGG + chr2_3:63784813-63784832 None:intergenic 30.0%
AAGTTTATGGAAAAGCTACA+CGG + chr2_3:63785046-63785065 None:intergenic 30.0%
! ATGTAGATTTTGTCTGATGA+AGG - chr2_3:63785224-63785243 Msa0305780:intron 30.0%
GTTGTAATTTGAATTTAGCC+TGG - chr2_3:63785301-63785320 Msa0305780:intron 30.0%
! ACAAGACTTGTTCAAGTATA+AGG + chr2_3:63785805-63785824 None:intergenic 30.0%
! TATACTTGAACAAGTCTTGT+AGG - chr2_3:63785805-63785824 Msa0305780:intron 30.0%
! ATTTTCTCAGCCTAAAGTTT+GGG + chr2_3:63785850-63785869 None:intergenic 30.0%
GAAACTTGAGTTAGTATGTA+GGG + chr2_3:63785947-63785966 None:intergenic 30.0%
! AATTTGTTTATTGCAGCAAG+AGG + chr2_3:63786019-63786038 None:intergenic 30.0%
! AGTGTTACTACAGATACTTA+TGG - chr2_3:63786107-63786126 Msa0305780:intron 30.0%
TATTCAACAACTTATGGACA+TGG - chr2_3:63786175-63786194 Msa0305780:intron 30.0%
ATTCAACAACTTATGGACAT+GGG - chr2_3:63786176-63786195 Msa0305780:intron 30.0%
AGCAAAAGATGTAAATGACA+AGG + chr2_3:63786552-63786571 None:intergenic 30.0%
!!! TTTTGAGTTGAAACTCTTTC+AGG - chr2_3:63786588-63786607 Msa0305780:intron 30.0%
! ATCATCTAATACCTGTCTTT+TGG - chr2_3:63786821-63786840 Msa0305780:intron 30.0%
TGTTTCTTTATCTCTCCAAA+TGG + chr2_3:63787168-63787187 None:intergenic 30.0%
TGTGTGTATCTCTTTCTAAA+TGG - chr2_3:63787252-63787271 Msa0305780:intron 30.0%
!! TAGAGATAATTTTGATCAGG+CGG - chr2_3:63787458-63787477 Msa0305780:intron 30.0%
!!! CATTTTTTTGCAAAGGCATA+AGG + chr2_3:63787625-63787644 None:intergenic 30.0%
! TCTTTCTAGGGAAATTTATG+TGG - chr2_3:63787892-63787911 Msa0305780:intron 30.0%
!! TTTCGTTTTTCTCTAGTAAG+AGG + chr2_3:63788031-63788050 None:intergenic 30.0%
! GAAAGTATACGACTATTGCT+AGG - chr2_3:63783052-63783071 Msa0305780:three_prime_UTR 35.0%
ATTCCATTCGATTCTGATTC+CGG - chr2_3:63783091-63783110 Msa0305780:three_prime_UTR 35.0%
! TCACAGTGAAGACTTTGAAA+GGG - chr2_3:63783142-63783161 Msa0305780:three_prime_UTR 35.0%
GATGAACTCTGATTTCGAAA+TGG + chr2_3:63783170-63783189 None:intergenic 35.0%
AACATACATACCGAATCAGA+AGG + chr2_3:63783192-63783211 None:intergenic 35.0%
!! CAACAATTGCTGATTCACAA+TGG - chr2_3:63783359-63783378 Msa0305780:CDS 35.0%
! GACAATAAAGTCTCTGAAGA+TGG - chr2_3:63783413-63783432 Msa0305780:CDS 35.0%
! TCTTGTTGTCATGCTTAGTA+AGG - chr2_3:63783439-63783458 Msa0305780:intron 35.0%
CATTAACACCCTTCAAAAAG+AGG + chr2_3:63784007-63784026 None:intergenic 35.0%
!!! TTTTGCTAGAGGTATCTTGT+AGG + chr2_3:63784350-63784369 None:intergenic 35.0%
GATACCTCTAGCAAAACTAT+AGG - chr2_3:63784354-63784373 Msa0305780:CDS 35.0%
TGTAGAGTTCTCAACAGATT+AGG - chr2_3:63784399-63784418 Msa0305780:intron 35.0%
! TCTTCTGGTTAATCTTAGCA+CGG + chr2_3:63784615-63784634 None:intergenic 35.0%
!!! AGGGTGACATAGTGTTTTTT+GGG + chr2_3:63784711-63784730 None:intergenic 35.0%
TATTTGCAGAGTAAAGCCTT+GGG - chr2_3:63784824-63784843 Msa0305780:intron 35.0%
AGACAAAAGCCATACATTGT+AGG + chr2_3:63785142-63785161 None:intergenic 35.0%
! CTTTTGTCTCTATGTTTCTC+TGG - chr2_3:63785153-63785172 Msa0305780:intron 35.0%
TCAGATCACAGAAAATCATC+AGG + chr2_3:63785439-63785458 None:intergenic 35.0%
ATTTGTACAACCCCAACTTA+GGG + chr2_3:63785512-63785531 None:intergenic 35.0%
! TGGGGTTGTACAAATGTTTT+TGG - chr2_3:63785517-63785536 Msa0305780:intron 35.0%
! GGGGTTGTACAAATGTTTTT+GGG - chr2_3:63785518-63785537 Msa0305780:intron 35.0%
!!! TTGTACAAATGTTTTTGGGC+TGG - chr2_3:63785522-63785541 Msa0305780:intron 35.0%
AATGAAGTTGTACACAAGTC+TGG + chr2_3:63785592-63785611 None:intergenic 35.0%
! AAAGTTTGGGTTACTCACAA+TGG + chr2_3:63785837-63785856 None:intergenic 35.0%
TTGTGAGTAACCCAAACTTT+AGG - chr2_3:63785837-63785856 Msa0305780:intron 35.0%
! GATTTTCTCAGCCTAAAGTT+TGG + chr2_3:63785851-63785870 None:intergenic 35.0%
! GTAGGGATTTAGGTTTACTT+AGG + chr2_3:63785930-63785949 None:intergenic 35.0%
GAGTTAGTATGTAGGGATTT+AGG + chr2_3:63785940-63785959 None:intergenic 35.0%
GGAAACTTGAGTTAGTATGT+AGG + chr2_3:63785948-63785967 None:intergenic 35.0%
TACTACAGATACTTATGGAC+AGG - chr2_3:63786112-63786131 Msa0305780:intron 35.0%
GCAGACTATTCAACAACTTA+TGG - chr2_3:63786169-63786188 Msa0305780:intron 35.0%
GAATCAACAATGAGCAGTTT+AGG + chr2_3:63786295-63786314 None:intergenic 35.0%
CTGTTTCAGTTGGATTACTT+GGG + chr2_3:63786423-63786442 None:intergenic 35.0%
ACCTGTGGAAACATATTCAA+GGG + chr2_3:63786490-63786509 None:intergenic 35.0%
TACCTGTGGAAACATATTCA+AGG + chr2_3:63786491-63786510 None:intergenic 35.0%
ATGAAACAAAATGCCTACCT+GGG + chr2_3:63786671-63786690 None:intergenic 35.0%
TTAGATACCTGGAGAATTTG+TGG + chr2_3:63786786-63786805 None:intergenic 35.0%
CAAACAAATGACCAAAAGAC+AGG + chr2_3:63786835-63786854 None:intergenic 35.0%
!! TCAGTTGATAAATGAACCCA+TGG - chr2_3:63786957-63786976 Msa0305780:intron 35.0%
TTGATAAATGAACCCATGGA+CGG - chr2_3:63786961-63786980 Msa0305780:intron 35.0%
AGTATACTGCTTTCCATGTA+TGG - chr2_3:63786996-63787015 Msa0305780:intron 35.0%
AAACTATCACAGACCATACA+TGG + chr2_3:63787012-63787031 None:intergenic 35.0%
! AATGGAGATCTAAAATGGAG+AGG + chr2_3:63787141-63787160 None:intergenic 35.0%
GTAGGAATGGAGATCTAAAA+TGG + chr2_3:63787146-63787165 None:intergenic 35.0%
TCTTTATCTCTCCAAATGGT+AGG + chr2_3:63787164-63787183 None:intergenic 35.0%
TTACCTTCATGTCACAAACA+TGG + chr2_3:63787326-63787345 None:intergenic 35.0%
! AGCATTTTCCAGTAAGTAGT+TGG + chr2_3:63787772-63787791 None:intergenic 35.0%
AACTACTTACTGGAAAATGC+TGG - chr2_3:63787771-63787790 Msa0305780:CDS 35.0%
ACTACTTACTGGAAAATGCT+GGG - chr2_3:63787772-63787791 Msa0305780:CDS 35.0%
! TTTTCTCCTTTTTGCAAGGA+GGG - chr2_3:63787848-63787867 Msa0305780:intron 35.0%
ATGTGGTAGAGTTTCTGATT+TGG - chr2_3:63787909-63787928 Msa0305780:intron 35.0%
!! GTAGAGTTTCTGATTTGGAT+TGG - chr2_3:63787914-63787933 Msa0305780:intron 35.0%
TTAGCTATCTTCCCTGATTT+AGG - chr2_3:63787997-63788016 Msa0305780:exon 35.0%
!!! CTATTTTTTTCTCTCCCCAA+AGG - chr2_3:63788070-63788089 Msa0305780:five_prime_UTR 35.0%
TAGTAATGTACAGGGGAAAA+GGG + chr2_3:63788130-63788149 None:intergenic 35.0%
ATAGTAATGTACAGGGGAAA+AGG + chr2_3:63788131-63788150 None:intergenic 35.0%
ATTCGATTCTGATTCCGGAT+CGG - chr2_3:63783096-63783115 Msa0305780:three_prime_UTR 40.0%
CTCACAGTGAAGACTTTGAA+AGG - chr2_3:63783141-63783160 Msa0305780:three_prime_UTR 40.0%
CAGAGTTCATCCTTCTGATT+CGG - chr2_3:63783179-63783198 Msa0305780:three_prime_UTR 40.0%
GGAAAGGATAATTACCCATG+CGG - chr2_3:63783335-63783354 Msa0305780:CDS 40.0%
! GGCTGAATTTTGCACTATCA+GGG - chr2_3:63783517-63783536 Msa0305780:intron 40.0%
!! TATAGTGGTATAGCGGATAG+CGG + chr2_3:63784276-63784295 None:intergenic 40.0%
!! CTACCCTATAGTTTTGCTAG+AGG + chr2_3:63784361-63784380 None:intergenic 40.0%
GGTAGAGTTCTCAACAGATT+AGG - chr2_3:63784376-63784395 Msa0305780:intron 40.0%
!! AATGCAGGCTAGTTCTATCT+TGG + chr2_3:63784523-63784542 None:intergenic 40.0%
! AGATAGAACTAGCCTGCATT+TGG - chr2_3:63784523-63784542 Msa0305780:intron 40.0%
TCAGGGACTTTATACTCTTC+TGG + chr2_3:63784630-63784649 None:intergenic 40.0%
! GAAGAGTATAAAGTCCCTGA+AGG - chr2_3:63784630-63784649 Msa0305780:intron 40.0%
!!! GAGGGTGACATAGTGTTTTT+TGG + chr2_3:63784712-63784731 None:intergenic 40.0%
CTATTTGCAGAGTAAAGCCT+TGG - chr2_3:63784823-63784842 Msa0305780:intron 40.0%
CAGTCACTAACTCATACAAG+AGG + chr2_3:63784925-63784944 None:intergenic 40.0%
!! AGTTATAGGTGGATTGCTAG+CGG + chr2_3:63784963-63784982 None:intergenic 40.0%
TTTACCATGACCTGGTCTAT+TGG + chr2_3:63785401-63785420 None:intergenic 40.0%
! TGTTTCGTTCAAAGCTCTGA+AGG - chr2_3:63785467-63785486 Msa0305780:intron 40.0%
!! GTTTCGTTCAAAGCTCTGAA+GGG - chr2_3:63785468-63785487 Msa0305780:intron 40.0%
CATTTGTACAACCCCAACTT+AGG + chr2_3:63785513-63785532 None:intergenic 40.0%
TAGAATCCTAATCGAACCAC+AGG - chr2_3:63785889-63785908 Msa0305780:intron 40.0%
AGAATCCTAATCGAACCACA+GGG - chr2_3:63785890-63785909 Msa0305780:intron 40.0%
ATTTCAGAAGGTTTGACGAC+AGG + chr2_3:63786066-63786085 None:intergenic 40.0%
GCTGCTTCAAATTTAGTTGC+TGG - chr2_3:63786134-63786153 Msa0305780:CDS 40.0%
CCTGTTTCAGTTGGATTACT+TGG + chr2_3:63786424-63786443 None:intergenic 40.0%
CCAAGTAATCCAACTGAAAC+AGG - chr2_3:63786421-63786440 Msa0305780:intron 40.0%
AGTAATCCAACTGAAACAGG+TGG - chr2_3:63786424-63786443 Msa0305780:intron 40.0%
GTAATCCAACTGAAACAGGT+GGG - chr2_3:63786425-63786444 Msa0305780:intron 40.0%
TAATCCAACTGAAACAGGTG+GGG - chr2_3:63786426-63786445 Msa0305780:intron 40.0%
TATTCAAGGGAGACGAGTTA+GGG + chr2_3:63786477-63786496 None:intergenic 40.0%
ATATTCAAGGGAGACGAGTT+AGG + chr2_3:63786478-63786497 None:intergenic 40.0%
TCCCTTGAATATGTTTCCAC+AGG - chr2_3:63786486-63786505 Msa0305780:intron 40.0%
CTCTTTCAGGAGACAATTTC+TGG - chr2_3:63786601-63786620 Msa0305780:intron 40.0%
TGAAACAAAATGCCTACCTG+GGG + chr2_3:63786670-63786689 None:intergenic 40.0%
GATGAAACAAAATGCCTACC+TGG + chr2_3:63786672-63786691 None:intergenic 40.0%
ATCCAATCCACAAATTCTCC+AGG - chr2_3:63786776-63786795 Msa0305780:intron 40.0%
TACCTGGAGAATTTGTGGAT+TGG + chr2_3:63786781-63786800 None:intergenic 40.0%
TCAATAAGTCTCAAGAGACC+TGG + chr2_3:63786916-63786935 None:intergenic 40.0%
AAATGGAGAGGATCTTGACT+CGG + chr2_3:63787129-63787148 None:intergenic 40.0%
AGATCTCCATTCCTACCATT+TGG - chr2_3:63787150-63787169 Msa0305780:intron 40.0%
ATCTCTCCAAATGGTAGGAA+TGG + chr2_3:63787159-63787178 None:intergenic 40.0%
AAACATGGCAAAGACGAGTT+AGG + chr2_3:63787311-63787330 None:intergenic 40.0%
TTGCCATGTTTGTGACATGA+AGG - chr2_3:63787320-63787339 Msa0305780:intron 40.0%
!!! GGTAATGTTTTGACCTGTTG+TGG - chr2_3:63787341-63787360 Msa0305780:intron 40.0%
TAAATGCTACAGATGCTTCC+TGG + chr2_3:63787375-63787394 None:intergenic 40.0%
CAAAAATGCCTCTATGACAG+AGG + chr2_3:63787721-63787740 None:intergenic 40.0%
!!! CTCTGTCATAGAGGCATTTT+TGG - chr2_3:63787719-63787738 Msa0305780:CDS 40.0%
CTACTTACTGGAAAATGCTG+GGG - chr2_3:63787773-63787792 Msa0305780:CDS 40.0%
! AGGCTTTTCTCCTTTTTGCA+AGG - chr2_3:63787844-63787863 Msa0305780:intron 40.0%
! CTTTTCTCCTTTTTGCAAGG+AGG - chr2_3:63787847-63787866 Msa0305780:intron 40.0%
ATCTTCCCTGATTTAGGCTT+TGG - chr2_3:63788003-63788022 Msa0305780:exon 40.0%
AGGAACCAAAGCCTAAATCA+GGG + chr2_3:63788011-63788030 None:intergenic 40.0%
GATCCGGAATCAGAATCGAA+TGG + chr2_3:63783097-63783116 None:intergenic 45.0%
TCAGCAATTGTTGTCCGCAT+GGG + chr2_3:63783352-63783371 None:intergenic 45.0%
ATCAGCAATTGTTGTCCGCA+TGG + chr2_3:63783353-63783372 None:intergenic 45.0%
! GGGCTGAATTTTGCACTATC+AGG - chr2_3:63783516-63783535 Msa0305780:intron 45.0%
CGACAGAGGAATAGAGTGAA+AGG + chr2_3:63783571-63783590 None:intergenic 45.0%
GTGATGAATGTTGTCGACAG+AGG + chr2_3:63783585-63783604 None:intergenic 45.0%
TCGAAAAAGAGCTGTAGCGA+TGG - chr2_3:63783668-63783687 Msa0305780:intron 45.0%
GCTACACTATTCTGCTAGAG+TGG + chr2_3:63783797-63783816 None:intergenic 45.0%
TGTGTGAGCAAGAACACAAC+AGG + chr2_3:63784070-63784089 None:intergenic 45.0%
GAGCCCCTAAAATGCTATAG+TGG + chr2_3:63784291-63784310 None:intergenic 45.0%
AAGCAACATGTGAGAGAAGC+GGG + chr2_3:63784551-63784570 None:intergenic 45.0%
GAAGCAACATGTGAGAGAAG+CGG + chr2_3:63784552-63784571 None:intergenic 45.0%
!! CGGACTCGGAAATCTTGTTT+TGG + chr2_3:63784595-63784614 None:intergenic 45.0%
GGTTAATCTTAGCACGGACT+CGG + chr2_3:63784609-63784628 None:intergenic 45.0%
!! TCTGGTGTTGGCACAGTTAT+AGG + chr2_3:63784977-63784996 None:intergenic 45.0%
TGTACTACAGGTGTGGAATC+TGG + chr2_3:63784995-63785014 None:intergenic 45.0%
ACTCACTGAGTCTGTACTAC+AGG + chr2_3:63785007-63785026 None:intergenic 45.0%
GTTGTGGCACCTACAATGTA+TGG - chr2_3:63785130-63785149 Msa0305780:intron 45.0%
AACTTAGGGTTGGGCAGAAT+TGG + chr2_3:63785498-63785517 None:intergenic 45.0%
AATTCTGCCCAACCCTAAGT+TGG - chr2_3:63785497-63785516 Msa0305780:intron 45.0%
ATTCTGCCCAACCCTAAGTT+GGG - chr2_3:63785498-63785517 Msa0305780:intron 45.0%
TACAACCCCAACTTAGGGTT+GGG + chr2_3:63785507-63785526 None:intergenic 45.0%
CTGTCTCATTGCCATGAGAA+AGG - chr2_3:63785566-63785585 Msa0305780:intron 45.0%
GTGATGTCTGAATGCAGTCA+GGG + chr2_3:63785617-63785636 None:intergenic 45.0%
AGTGATGTCTGAATGCAGTC+AGG + chr2_3:63785618-63785637 None:intergenic 45.0%
GACGACAGGATAGAGGTAAA+TGG + chr2_3:63786052-63786071 None:intergenic 45.0%
AAGGTTTGACGACAGGATAG+AGG + chr2_3:63786059-63786078 None:intergenic 45.0%
CAACAACTTATGGACATGGG+TGG - chr2_3:63786179-63786198 Msa0305780:intron 45.0%
AAGTAATCTACAGCACGCTC+TGG + chr2_3:63786260-63786279 None:intergenic 45.0%
! ACAGCAATTTCTGCTGCTTC+AGG + chr2_3:63786385-63786404 None:intergenic 45.0%
AGCAGCAGAAATTGCTGTAC+CGG - chr2_3:63786387-63786406 Msa0305780:intron 45.0%
!! TTACTTGGGTATTGAGCAGC+CGG + chr2_3:63786409-63786428 None:intergenic 45.0%
! GTTTCAAGCATTGCGGACAA+TGG - chr2_3:63786749-63786768 Msa0305780:intron 45.0%
TCTATTGCAGCCTGTACTTC+AGG - chr2_3:63786873-63786892 Msa0305780:intron 45.0%
! CCTGGATTAGATACCACAAC+AGG + chr2_3:63787357-63787376 None:intergenic 45.0%
CCTGTTGTGGTATCTAATCC+AGG - chr2_3:63787354-63787373 Msa0305780:intron 45.0%
TACCTATGACATGCAGCTAG+AGG - chr2_3:63787677-63787696 Msa0305780:intron 45.0%
TGATAGAGCCTCTGTCATAG+AGG - chr2_3:63787710-63787729 Msa0305780:CDS 45.0%
ATGTGACCGTGATGAGCAAT+TGG - chr2_3:63787743-63787762 Msa0305780:CDS 45.0%
ATTGGCAGCCAACTACTTAC+TGG - chr2_3:63787761-63787780 Msa0305780:CDS 45.0%
! GGAAAATGCTGGGGATTTTG+AGG - chr2_3:63787782-63787801 Msa0305780:CDS 45.0%
AAACCACCCTCCTTGCAAAA+AGG + chr2_3:63787857-63787876 None:intergenic 45.0%
GAGGAACCAAAGCCTAAATC+AGG + chr2_3:63788012-63788031 None:intergenic 45.0%
! TTTTTCTCTCCCCAAAGGAG+AGG - chr2_3:63788075-63788094 Msa0305780:five_prime_UTR 45.0%
ATCCGTTACTCCTCTCCTTT+GGG + chr2_3:63788088-63788107 None:intergenic 45.0%
AATCCGTTACTCCTCTCCTT+TGG + chr2_3:63788089-63788108 None:intergenic 45.0%
!! GAGTAACGGATTGTGGAGTT+AGG - chr2_3:63788097-63788116 Msa0305780:five_prime_UTR 45.0%
GAGAAGAGAAGAGAAGAGCG+TGG - chr2_3:63783015-63783034 Msa0305780:three_prime_UTR 50.0%
! AAGAGAAGAGAAGAGCGTGG+TGG - chr2_3:63783018-63783037 Msa0305780:three_prime_UTR 50.0%
! AGAGAAGAGAAGAGCGTGGT+GGG - chr2_3:63783019-63783038 Msa0305780:three_prime_UTR 50.0%
CTAGCAGAATAGTGTAGCCG+TGG - chr2_3:63783799-63783818 Msa0305780:intron 50.0%
!!! GGAGTTTGGTGCAACGCTTT+TGG - chr2_3:63783823-63783842 Msa0305780:intron 50.0%
ACAACCGGTATTGCTGACAG+CGG + chr2_3:63783857-63783876 None:intergenic 50.0%
! GTCAGCAATACCGGTTGTTG+CGG - chr2_3:63783859-63783878 Msa0305780:intron 50.0%
!! TCCTAATAGCGGACGCGATA+GGG + chr2_3:63783893-63783912 None:intergenic 50.0%
!! ATCCTAATAGCGGACGCGAT+AGG + chr2_3:63783894-63783913 None:intergenic 50.0%
TAATCCCAGACAGTGTCACG+TGG + chr2_3:63784318-63784337 None:intergenic 50.0%
ACACTATGTCACCCTCTCTC+TGG - chr2_3:63784716-63784735 Msa0305780:CDS 50.0%
CACTATGTCACCCTCTCTCT+GGG - chr2_3:63784717-63784736 Msa0305780:CDS 50.0%
ACTATGTCACCCTCTCTCTG+GGG - chr2_3:63784718-63784737 Msa0305780:CDS 50.0%
CTAAATTGGCCCCAGAGAGA+GGG + chr2_3:63784730-63784749 None:intergenic 50.0%
AGTAAAGCCTTGGGATCTGC+TGG - chr2_3:63784833-63784852 Msa0305780:intron 50.0%
TGCTGGAACTTCGTCTACTC+AGG - chr2_3:63784850-63784869 Msa0305780:intron 50.0%
!! GGTGTTGGCACAGTTATAGG+TGG + chr2_3:63784974-63784993 None:intergenic 50.0%
ACAGGTGTGGAATCTGGTGT+TGG + chr2_3:63784989-63785008 None:intergenic 50.0%
CTGAGTCTGTACTACAGGTG+TGG + chr2_3:63785002-63785021 None:intergenic 50.0%
CAACTCATCTCCTGCAGTTG+TGG - chr2_3:63785114-63785133 Msa0305780:intron 50.0%
! ATTGTAGGTGCCACAACTGC+AGG + chr2_3:63785127-63785146 None:intergenic 50.0%
TAAGGGCAAGCCAATAGACC+AGG - chr2_3:63785388-63785407 Msa0305780:intron 50.0%
CAAGCCAATAGACCAGGTCA+TGG - chr2_3:63785394-63785413 Msa0305780:intron 50.0%
!! CGTTCAAAGCTCTGAAGGGA+AGG - chr2_3:63785472-63785491 Msa0305780:intron 50.0%
TTCTGCCCAACCCTAAGTTG+GGG - chr2_3:63785499-63785518 Msa0305780:intron 50.0%
GTACAACCCCAACTTAGGGT+TGG + chr2_3:63785508-63785527 None:intergenic 50.0%
! CACAAGTCTGGCCTTTCTCA+TGG + chr2_3:63785580-63785599 None:intergenic 50.0%
GCATTCCCTGTGGTTCGATT+AGG + chr2_3:63785898-63785917 None:intergenic 50.0%
GTCTAGTACAGCATTCCCTG+TGG + chr2_3:63785908-63785927 None:intergenic 50.0%
CAACTTATGGACATGGGTGG+TGG - chr2_3:63786182-63786201 Msa0305780:intron 50.0%
! AGCACGAAGAGCACGATTGA+CGG + chr2_3:63786225-63786244 None:intergenic 50.0%
TCACTACCGGAGTTGTTCCT+GGG - chr2_3:63786449-63786468 Msa0305780:intron 50.0%
!! CAGGAGACAATTTCTGGTGC+TGG - chr2_3:63786607-63786626 Msa0305780:intron 50.0%
!! ACAATTTCTGGTGCTGGAGC+TGG - chr2_3:63786613-63786632 Msa0305780:intron 50.0%
! CTGGTTCGCTTGACTTCTTG+AGG - chr2_3:63786638-63786657 Msa0305780:intron 50.0%
CTTCTTGAGGAACAATCCCC+AGG - chr2_3:63786651-63786670 Msa0305780:intron 50.0%
TTGAGGAACAATCCCCAGGT+AGG - chr2_3:63786655-63786674 Msa0305780:intron 50.0%
TTTCCGAGCTCCTGAAGTAC+AGG + chr2_3:63786886-63786905 None:intergenic 50.0%
GAGCTCGGAAAGCAAAATCC+AGG - chr2_3:63786895-63786914 Msa0305780:intron 50.0%
! AACCCATGGACGGTACTGAA+GGG - chr2_3:63786971-63786990 Msa0305780:intron 50.0%
TGATGTTGGGACCCACTTGT+TGG - chr2_3:63787209-63787228 Msa0305780:intron 50.0%
TGTGGGTCCTACCAACAAGT+GGG + chr2_3:63787223-63787242 None:intergenic 50.0%
ATGTGGGTCCTACCAACAAG+TGG + chr2_3:63787224-63787243 None:intergenic 50.0%
GGCGTCACATTAACAGCATG+AGG + chr2_3:63787495-63787514 None:intergenic 50.0%
AGCCTCTAGCTGCATGTCAT+AGG + chr2_3:63787682-63787701 None:intergenic 50.0%
TGACATGCAGCTAGAGGCTA+TGG - chr2_3:63787683-63787702 Msa0305780:CDS 50.0%
GACATGCAGCTAGAGGCTAT+GGG - chr2_3:63787684-63787703 Msa0305780:CDS 50.0%
TGGCTGCCAATTGCTCATCA+CGG + chr2_3:63787752-63787771 None:intergenic 50.0%
! TCTCCTTTTTGCAAGGAGGG+TGG - chr2_3:63787851-63787870 Msa0305780:intron 50.0%
TCCCCAAAGGAGAGGAGTAA+CGG - chr2_3:63788083-63788102 Msa0305780:five_prime_UTR 50.0%
TCCGTTACTCCTCTCCTTTG+GGG + chr2_3:63788087-63788106 None:intergenic 50.0%
!! AGGAGAGGAGTAACGGATTG+TGG - chr2_3:63788090-63788109 Msa0305780:five_prime_UTR 50.0%
ATGTACAGGGGAAAAGGGAG+AGG + chr2_3:63788125-63788144 None:intergenic 50.0%
!! GAGCGTGGTGGGTGAAAAAG+AGG - chr2_3:63783030-63783049 Msa0305780:three_prime_UTR 55.0%
CTGACTGACTGACACCGATC+CGG + chr2_3:63783113-63783132 None:intergenic 55.0%
GCAGAATAGTGTAGCCGTGG+TGG - chr2_3:63783802-63783821 Msa0305780:intron 55.0%
! AGTGTAGCCGTGGTGGAGTT+TGG - chr2_3:63783809-63783828 Msa0305780:intron 55.0%
CGTTGCACCAAACTCCACCA+CGG + chr2_3:63783819-63783838 None:intergenic 55.0%
TATTGCTGACAGCGGCTTGC+AGG + chr2_3:63783849-63783868 None:intergenic 55.0%
CAAGCCGCTGTCAGCAATAC+CGG - chr2_3:63783850-63783869 Msa0305780:intron 55.0%
AGCACCACGTGACACTGTCT+GGG - chr2_3:63784311-63784330 Msa0305780:intron 55.0%
CCTAAATTGGCCCCAGAGAG+AGG + chr2_3:63784731-63784750 None:intergenic 55.0%
!! CCTCTCTCTGGGGCCAATTT+AGG - chr2_3:63784728-63784747 Msa0305780:CDS 55.0%
CGAAGTTCCAGCAGATCCCA+AGG + chr2_3:63784843-63784862 None:intergenic 55.0%
GTGACCCCACCTGTTTCAGT+TGG + chr2_3:63786433-63786452 None:intergenic 55.0%
GAAACAGGTGGGGTCACTAC+CGG - chr2_3:63786436-63786455 Msa0305780:intron 55.0%
GTCACTACCGGAGTTGTTCC+TGG - chr2_3:63786448-63786467 Msa0305780:intron 55.0%
CACTACCGGAGTTGTTCCTG+GGG - chr2_3:63786450-63786469 Msa0305780:intron 55.0%
CAGCCTGTACTTCAGGAGCT+CGG - chr2_3:63786880-63786899 Msa0305780:intron 55.0%
! GAACCCATGGACGGTACTGA+AGG - chr2_3:63786970-63786989 Msa0305780:intron 55.0%
CACCCTTCAGTACCGTCCAT+GGG + chr2_3:63786976-63786995 None:intergenic 55.0%
TCACCCTTCAGTACCGTCCA+TGG + chr2_3:63786977-63786996 None:intergenic 55.0%
! GTTGGGACCCACTTGTTGGT+AGG - chr2_3:63787213-63787232 Msa0305780:intron 55.0%
TAATGTGACGCCAGCTGAGC+AGG - chr2_3:63787503-63787522 Msa0305780:intron 55.0%
TGAGCAGGAGGCAATCGGAA+GGG - chr2_3:63787518-63787537 Msa0305780:intron 55.0%
GGCATTAGGGCCGCAACAAC+CGG + chr2_3:63783872-63783891 None:intergenic 60.0%
! GCGGACGCGATAGGGCATTA+GGG + chr2_3:63783885-63783904 None:intergenic 60.0%
! AGCGGACGCGATAGGGCATT+AGG + chr2_3:63783886-63783905 None:intergenic 60.0%
GCCCTATCGCGTCCGCTATT+AGG - chr2_3:63783889-63783908 Msa0305780:intron 60.0%
CAGCACCACGTGACACTGTC+TGG - chr2_3:63784310-63784329 Msa0305780:intron 60.0%
! GAGAAGCGGGCTCCAAATGC+AGG + chr2_3:63784538-63784557 None:intergenic 60.0%
AGGGACCCCAGGAACAACTC+CGG + chr2_3:63786458-63786477 None:intergenic 60.0%
CCAGCTGAGCAGGAGGCAAT+CGG - chr2_3:63787513-63787532 Msa0305780:intron 60.0%
CTGAGCAGGAGGCAATCGGA+AGG - chr2_3:63787517-63787536 Msa0305780:intron 60.0%
! TGGACATGGGTGGTGGCAGC+TGG - chr2_3:63786189-63786208 Msa0305780:intron 65.0%
! GGACATGGGTGGTGGCAGCT+GGG - chr2_3:63786190-63786209 Msa0305780:intron 65.0%
GGAGACGAGTTAGGGACCCC+AGG + chr2_3:63786469-63786488 None:intergenic 65.0%
! TCTGGTGCTGGAGCTGGAGC+TGG - chr2_3:63786619-63786638 Msa0305780:intron 65.0%
TGTGACGCCAGCTGAGCAGG+AGG - chr2_3:63787506-63787525 Msa0305780:intron 65.0%
CCGATTGCCTCCTGCTCAGC+TGG + chr2_3:63787516-63787535 None:intergenic 65.0%
! TGGGTGGTGGCAGCTGGGAC+AGG - chr2_3:63786195-63786214 Msa0305780:intron 70.0%
! GGGTGGTGGCAGCTGGGACA+GGG - chr2_3:63786196-63786215 Msa0305780:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 63782983 63788160 63782983 ID=Msa0305780;Name=Msa0305780
chr2_3 mRNA 63782983 63788160 63782983 ID=Msa0305780-mRNA-1;Parent=Msa0305780;Name=Msa0305780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=152|0.9|1|1|1|1|11|351|353
chr2_3 exon 63782983 63783450 63782983 ID=Msa0305780-mRNA-1:exon:21318;Parent=Msa0305780-mRNA-1
chr2_3 exon 63783604 63783682 63783604 ID=Msa0305780-mRNA-1:exon:21317;Parent=Msa0305780-mRNA-1
chr2_3 exon 63784151 63784260 63784151 ID=Msa0305780-mRNA-1:exon:21316;Parent=Msa0305780-mRNA-1
chr2_3 exon 63784346 63784393 63784346 ID=Msa0305780-mRNA-1:exon:21315;Parent=Msa0305780-mRNA-1
chr2_3 exon 63784471 63784533 63784471 ID=Msa0305780-mRNA-1:exon:21314;Parent=Msa0305780-mRNA-1
chr2_3 exon 63784636 63784767 63784636 ID=Msa0305780-mRNA-1:exon:21313;Parent=Msa0305780-mRNA-1
chr2_3 exon 63784857 63785034 63784857 ID=Msa0305780-mRNA-1:exon:21312;Parent=Msa0305780-mRNA-1
chr2_3 exon 63785997 63786041 63785997 ID=Msa0305780-mRNA-1:exon:21311;Parent=Msa0305780-mRNA-1
chr2_3 exon 63786123 63786184 63786123 ID=Msa0305780-mRNA-1:exon:21310;Parent=Msa0305780-mRNA-1
chr2_3 exon 63787683 63787844 63787683 ID=Msa0305780-mRNA-1:exon:21309;Parent=Msa0305780-mRNA-1
chr2_3 exon 63787943 63788160 63787943 ID=Msa0305780-mRNA-1:exon:21308;Parent=Msa0305780-mRNA-1
chr2_3 five_prime_UTR 63788009 63788160 63788009 ID=Msa0305780-mRNA-1:five_prime_utr;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63787943 63788008 63787943 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63787683 63787844 63787683 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63786123 63786184 63786123 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63785997 63786041 63785997 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63784857 63785034 63784857 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63784636 63784767 63784636 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63784471 63784533 63784471 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63784346 63784393 63784346 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63784151 63784260 63784151 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63783604 63783682 63783604 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 CDS 63783334 63783450 63783334 ID=Msa0305780-mRNA-1:cds;Parent=Msa0305780-mRNA-1
chr2_3 three_prime_UTR 63782983 63783333 63782983 ID=Msa0305780-mRNA-1:three_prime_utr;Parent=Msa0305780-mRNA-1
Gene Sequence

>Msa0305780

ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGAGTTCATCCTTCTGATTCGATAATGGCTGTAAAAAAGAATATTGAAGACATTCAAGGAAAGGATAATTACCCATGCGGACAACAATTGCTGATTCACAATGGAAAAGTTCTCAAAGATGAAACTACTTTAGCTGACAATAAAGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGTAAGACCGCTAGCAATCCACCTATAACTGTGCCAACACCAGATTCCACACCTGTAGTACAGACTCAATCTGCAAACAACAACTCATCTCCTGCAGTTGTGGCACCTACAATTGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGAAGTAATCTTGAGCAGACTATTCAACAACTTATGGACATGGGTGGTGGCAGCTGGGACAGGGATACCGTCAATCGTGCTCTTCGTGCTGCTTTCAATAATCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAATTGCTGTACCGGCTGCTCAATACCCAAGTAATCCAACTGAAACAGGTGGGGTCACTACCGGAGTTGTTCCTGGGGTCCCTAACTCGTCTCCCTTGAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGAGCTGGTTCGCTTGACTTCTTGAGGAACAATCCCCAGTTTCAAGCATTGCGGACAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTACTTCAGGAGCTCGGAAAGCAAAATCCAGGTCTCTTGAGACTTATTGACGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGACGGTACTGAAGGAGATAATTTTGATCAGGCGGAGCAAGACATGCCTCATGCTGTTAATGTGACGCCAGCTGAGCAGGAGGCAATCGGAAGGCTAGAGGCTATGGGATTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA

Protein sequence

>Msa0305780

MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKTASNPPITVPTPDSTPVVQTQSANNNSSPAVVAPTIVTTDTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEIAVPAAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETISGAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED*