Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336860 | XP_003597072.1 | 95.595 | 227 | 6 | 2 | 52 | 277 | 1 | 224 | 5.58e-154 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336860 | sp|Q8VYN9|PHO32_ARATH | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 2.06e-64 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084680 | Msa0336860 | -0.808889 | 2.480832e-50 | -8.615850e-47 |
| Msa0261250 | Msa0336860 | 0.946811 | 2.261650e-105 | -8.615850e-47 |
| Msa0265580 | Msa0336860 | -0.805059 | 1.602758e-49 | -8.615850e-47 |
| Msa0303440 | Msa0336860 | -0.801816 | 7.533234e-49 | -8.615850e-47 |
| Msa0336860 | Msa0583740 | -0.809239 | 2.087455e-50 | -8.615850e-47 |
| Msa0336860 | Msa0607340 | 0.800381 | 1.480175e-48 | -8.615850e-47 |
| Msa0336860 | Msa0769830 | -0.805261 | 1.454054e-49 | -8.615850e-47 |
| Msa0336860 | Msa1037060 | 0.836040 | 1.181093e-56 | -8.615850e-47 |
| Msa0336860 | Msa1154330 | -0.839027 | 2.025130e-57 | -8.615850e-47 |
| Msa0336860 | Msa1164800 | 0.830546 | 2.762826e-55 | -8.615850e-47 |
| Msa0336860 | Msa1177240 | -0.819173 | 1.334279e-52 | -8.615850e-47 |
| Msa0336860 | Msa1222030 | 0.802964 | 4.368873e-49 | -8.615850e-47 |
| Msa0336860 | Msa1245120 | 0.820946 | 5.243697e-53 | -8.615850e-47 |
| Msa0336860 | Msa1317030 | -0.809791 | 1.589359e-50 | -8.615850e-47 |
| Msa0336860 | Msa1400700 | 0.831563 | 1.555264e-55 | -8.615850e-47 |
| Msa0336860 | Msa1449880 | -0.801002 | 1.105713e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336860 | MtrunA17_Chr2g0323291 | 95.595 | 227 | 6 | 2 | 52 | 277 | 1 | 224 | 5.13e-158 | 442 |
| Msa0336860 | MtrunA17_Chr8g0361111 | 60.748 | 214 | 69 | 4 | 72 | 271 | 38 | 250 | 1.62e-74 | 231 |
| Msa0336860 | MtrunA17_Chr2g0318741 | 41.333 | 150 | 64 | 4 | 55 | 204 | 16 | 141 | 2.19e-30 | 114 |
| Msa0336860 | MtrunA17_Chr1g0194801 | 32.164 | 171 | 89 | 7 | 76 | 237 | 6 | 158 | 6.19e-20 | 85.9 |
| Msa0336860 | MtrunA17_Chr1g0192651 | 30.000 | 170 | 102 | 5 | 76 | 243 | 9 | 163 | 6.14e-19 | 83.2 |
| Msa0336860 | MtrunA17_Chr5g0427291 | 35.028 | 177 | 92 | 8 | 72 | 235 | 4 | 170 | 2.67e-18 | 82.0 |
| Msa0336860 | MtrunA17_Chr1g0176321 | 30.387 | 181 | 96 | 6 | 77 | 239 | 4 | 172 | 1.05e-16 | 77.4 |
| Msa0336860 | MtrunA17_Chr1g0176311 | 30.857 | 175 | 97 | 5 | 77 | 239 | 23 | 185 | 6.31e-16 | 75.5 |
| Msa0336860 | MtrunA17_Chr2g0294421 | 29.697 | 165 | 105 | 3 | 73 | 235 | 2 | 157 | 8.58e-16 | 74.3 |
| Msa0336860 | MtrunA17_Chr1g0195661 | 29.630 | 162 | 98 | 3 | 80 | 238 | 16 | 164 | 3.49e-15 | 72.8 |
| Msa0336860 | MtrunA17_Chr4g0032261 | 30.120 | 166 | 103 | 4 | 73 | 235 | 2 | 157 | 1.54e-14 | 70.9 |
| Msa0336860 | MtrunA17_Chr7g0240701 | 27.160 | 162 | 107 | 3 | 76 | 235 | 5 | 157 | 4.30e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336860 | AT1G11360.2 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.94e-89 | 269 |
| Msa0336860 | AT1G11360.1 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.94e-89 | 269 |
| Msa0336860 | AT1G11360.4 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.94e-89 | 269 |
| Msa0336860 | AT1G11360.3 | 59.259 | 243 | 77 | 7 | 44 | 276 | 12 | 242 | 2.94e-89 | 269 |
| Msa0336860 | AT5G54430.1 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 2.09e-65 | 208 |
| Msa0336860 | AT5G54430.4 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 2.09e-65 | 208 |
| Msa0336860 | AT5G54430.2 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 2.54e-65 | 208 |
| Msa0336860 | AT5G54430.5 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 2.54e-65 | 208 |
| Msa0336860 | AT5G54430.3 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 4.49e-65 | 207 |
| Msa0336860 | AT5G54430.6 | 67.836 | 171 | 49 | 3 | 73 | 242 | 45 | 210 | 4.49e-65 | 207 |
| Msa0336860 | AT4G27320.1 | 64.912 | 171 | 60 | 0 | 72 | 242 | 41 | 211 | 5.62e-64 | 205 |
| Msa0336860 | AT4G27320.2 | 64.912 | 171 | 60 | 0 | 72 | 242 | 41 | 211 | 6.01e-64 | 205 |
| Msa0336860 | AT3G21210.1 | 47.959 | 196 | 59 | 7 | 58 | 250 | 2 | 157 | 2.36e-33 | 132 |
| Msa0336860 | AT3G58450.1 | 34.286 | 175 | 90 | 6 | 78 | 240 | 32 | 193 | 7.51e-19 | 84.3 |
| Msa0336860 | AT3G58450.2 | 33.143 | 175 | 85 | 6 | 78 | 240 | 32 | 186 | 1.70e-17 | 80.5 |
| Msa0336860 | AT1G09740.2 | 34.270 | 178 | 100 | 6 | 72 | 242 | 4 | 171 | 1.77e-17 | 79.7 |
| Msa0336860 | AT1G09740.1 | 34.270 | 178 | 100 | 6 | 72 | 242 | 4 | 171 | 1.77e-17 | 79.7 |
| Msa0336860 | AT3G03270.2 | 33.728 | 169 | 93 | 4 | 73 | 235 | 2 | 157 | 2.79e-17 | 79.0 |
| Msa0336860 | AT3G11930.1 | 27.411 | 197 | 117 | 7 | 56 | 239 | 13 | 196 | 4.84e-17 | 79.3 |
| Msa0336860 | AT3G11930.4 | 26.667 | 195 | 123 | 5 | 56 | 239 | 13 | 198 | 1.06e-16 | 78.2 |
| Msa0336860 | AT3G11930.2 | 28.283 | 198 | 115 | 8 | 56 | 239 | 13 | 197 | 1.69e-16 | 77.8 |
| Msa0336860 | AT3G17020.1 | 28.834 | 163 | 104 | 3 | 76 | 235 | 7 | 160 | 3.16e-16 | 75.9 |
| Msa0336860 | AT3G53990.1 | 29.697 | 165 | 99 | 5 | 76 | 235 | 5 | 157 | 4.98e-14 | 69.7 |
| Msa0336860 | AT3G62550.1 | 32.143 | 168 | 90 | 6 | 75 | 235 | 6 | 156 | 5.73e-14 | 69.7 |
| Msa0336860 | AT3G11930.3 | 25.339 | 221 | 118 | 8 | 56 | 239 | 13 | 223 | 1.96e-13 | 69.7 |
| Msa0336860 | AT2G47710.1 | 26.667 | 165 | 98 | 5 | 80 | 238 | 12 | 159 | 1.04e-11 | 63.2 |
| Msa0336860 | AT3G03270.1 | 31.944 | 144 | 82 | 3 | 73 | 210 | 2 | 135 | 2.90e-11 | 62.8 |
| Msa0336860 | AT1G68300.1 | 29.518 | 166 | 93 | 7 | 76 | 235 | 10 | 157 | 7.22e-11 | 60.8 |
Find 112 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATCTTTCTTTCTTTCT+TGG | 0.165673 | 2_4:+56412430 | None:intergenic |
| CTTGGATGATGCATCATTTA+AGG | 0.170680 | 2_4:-56410768 | Msa0336860:CDS |
| AACCTCACTTTGAGTCTTAT+TGG | 0.171123 | 2_4:+56410889 | None:intergenic |
| GTCTTGATGTTGTTGAATTT+TGG | 0.195981 | 2_4:+56412452 | None:intergenic |
| TGGATTGAGTGCTGTGATTA+TGG | 0.202284 | 2_4:-56411890 | Msa0336860:CDS |
| ACCGTCGGCGGTGGCGGCGG+TGG | 0.208659 | 2_4:+56412086 | None:intergenic |
| CGTCGGCGGTGGCGGCGGTG+GGG | 0.235216 | 2_4:+56412088 | None:intergenic |
| CTATGATAGCGATCATATTT+AGG | 0.240995 | 2_4:-56411188 | Msa0336860:intron |
| ACCTCACTTTGAGTCTTATT+GGG | 0.252222 | 2_4:+56410890 | None:intergenic |
| GTCGGCGGTGGCGGCGGTGG+GGG | 0.286804 | 2_4:+56412089 | None:intergenic |
| CCGTCGGCGGTGGCGGCGGT+GGG | 0.293253 | 2_4:+56412087 | None:intergenic |
| AAGTTGCGCAGATTAATATT+TGG | 0.309939 | 2_4:+56412375 | None:intergenic |
| AGAGGAATGACATCACTTTC+AGG | 0.315306 | 2_4:-56411161 | Msa0336860:CDS |
| CGTTCTCTACGGCGCCGATT+GGG | 0.323896 | 2_4:-56412124 | Msa0336860:CDS |
| TTGAGTCTTATTGGGGATCT+TGG | 0.324929 | 2_4:+56410898 | None:intergenic |
| CCGTTCTCTACGGCGCCGAT+TGG | 0.330764 | 2_4:-56412125 | Msa0336860:CDS |
| TCATGTTCTTCCTCAATAAC+AGG | 0.333897 | 2_4:+56411694 | None:intergenic |
| AGAATCATCCAAAGCTCTAT+TGG | 0.365393 | 2_4:+56410955 | None:intergenic |
| TCGAGCCGGGTGATCCGGTT+CGG | 0.366540 | 2_4:+56412290 | None:intergenic |
| TTTGTCCTGTTGTTGTTGTA+AGG | 0.379033 | 2_4:-56411786 | Msa0336860:CDS |
| ATCGCCACCGTCGGCGGTGG+CGG | 0.381717 | 2_4:+56412080 | None:intergenic |
| GGATTGAGTGCTGTGATTAT+GGG | 0.392819 | 2_4:-56411889 | Msa0336860:CDS |
| GCCACCGTCGGCGGTGGCGG+CGG | 0.401210 | 2_4:+56412083 | None:intergenic |
| AATATTAATCTGCGCAACTT+TGG | 0.403368 | 2_4:-56412372 | Msa0336860:CDS |
| ATTCATGTTGGAGAAAATTA+CGG | 0.409949 | 2_4:+56412332 | None:intergenic |
| TATGAAGGAAAGATTGTGTT+TGG | 0.411316 | 2_4:-56411926 | Msa0336860:CDS |
| TTCACAATGTGAATCTTAAA+CGG | 0.413061 | 2_4:+56411958 | None:intergenic |
| GGCGGTGGCGCCGGAGTTGA+AGG | 0.418319 | 2_4:-56411745 | Msa0336860:CDS |
| GAGAATCGAGCCGGGTGATC+CGG | 0.418386 | 2_4:+56412285 | None:intergenic |
| CGAGCCGGGTGATCCGGTTC+GGG | 0.434205 | 2_4:+56412291 | None:intergenic |
| GGCACTCCCGTGCCACTAGC+AGG | 0.436548 | 2_4:+56410809 | None:intergenic |
| ACCATCATTCCCTTCAACTC+CGG | 0.437183 | 2_4:+56411735 | None:intergenic |
| CCCGTGCCACTAGCAGGCAT+TGG | 0.438693 | 2_4:+56410815 | None:intergenic |
| CCCACCGCCGCCACCGCCGA+CGG | 0.446499 | 2_4:-56412087 | Msa0336860:CDS |
| GGAGGGGACGGAACCCCAAT+CGG | 0.448915 | 2_4:+56412110 | None:intergenic |
| TGCGACTTTGCGGTGTGAAC+CGG | 0.449024 | 2_4:+56412254 | None:intergenic |
| ACCGCCGCCACCGCCGACGG+TGG | 0.455733 | 2_4:-56412084 | Msa0336860:CDS |
| GCGACGAAGAGAAGTTCTAA+TGG | 0.460127 | 2_4:-56411850 | Msa0336860:CDS |
| CCGTGCCACTAGCAGGCATT+GGG | 0.461976 | 2_4:+56410816 | None:intergenic |
| TGTTGTTGTTGTAAGGTATC+CGG | 0.464214 | 2_4:-56411779 | Msa0336860:CDS |
| CACCAATGGTTGTGCAAGAT+CGG | 0.464706 | 2_4:+56411993 | None:intergenic |
| TTTCGTATCCAATAGAGCTT+TGG | 0.466621 | 2_4:-56410963 | Msa0336860:CDS |
| GAGAGTGATGGCGGTGGCGC+CGG | 0.471955 | 2_4:-56411754 | Msa0336860:CDS |
| GGATACCTTACAACAACAAC+AGG | 0.473220 | 2_4:+56411781 | None:intergenic |
| AGAAGTTCTAATGGGAAGCT+TGG | 0.473262 | 2_4:-56411841 | Msa0336860:CDS |
| ATCACCGGTTCGGCCCGAAC+CGG | 0.473685 | 2_4:-56412304 | Msa0336860:CDS |
| ATAAGACTCAAAGTGAGGTT+AGG | 0.474616 | 2_4:-56410886 | Msa0336860:CDS |
| TGATCCGGTTCGGGCCGAAC+CGG | 0.474957 | 2_4:+56412300 | None:intergenic |
| TGTGTTGAAGTGGGAGGAAG+AGG | 0.480328 | 2_4:-56410999 | Msa0336860:intron |
| GGCATCGCCACCGTCGGCGG+TGG | 0.483223 | 2_4:+56412077 | None:intergenic |
| GTAACGGATCAAAGAGTTTG+AGG | 0.483366 | 2_4:+56412409 | None:intergenic |
| TGAACTTCATCCTGTTATTG+AGG | 0.483983 | 2_4:-56411704 | Msa0336860:CDS |
| CAACGGCGATTGCGACTTTG+CGG | 0.486543 | 2_4:+56412244 | None:intergenic |
| ATTATGGGAAGCCGTGGATT+CGG | 0.487024 | 2_4:-56411874 | Msa0336860:CDS |
| TGTGAAAGATCATGATATGA+AGG | 0.493312 | 2_4:-56411941 | Msa0336860:CDS |
| AGGAGGATGACGGTGTCGCC+TGG | 0.496895 | 2_4:+56412165 | None:intergenic |
| CGACGAAGAGAAGTTCTAAT+GGG | 0.501552 | 2_4:-56411849 | Msa0336860:CDS |
| CGATCTTGCACAACCATTGG+TGG | 0.502670 | 2_4:-56411992 | Msa0336860:CDS |
| CCCAATGCCTGCTAGTGGCA+CGG | 0.505492 | 2_4:-56410816 | Msa0336860:CDS |
| AAAGCGCCTACGCCGTCCGA+TGG | 0.507961 | 2_4:-56412209 | Msa0336860:CDS |
| CCAATGCCTGCTAGTGGCAC+GGG | 0.512889 | 2_4:-56410815 | Msa0336860:CDS |
| TCGGGCCGAACCGGTGATTG+TGG | 0.519250 | 2_4:+56412309 | None:intergenic |
| GCTCGATTCTCTCTCCCATC+CGG | 0.521090 | 2_4:-56412273 | Msa0336860:CDS |
| GAGGAATGACATCACTTTCA+GGG | 0.522359 | 2_4:-56411160 | Msa0336860:intron |
| AACCGATCTTGCACAACCAT+TGG | 0.523574 | 2_4:-56411995 | Msa0336860:CDS |
| TGAATCCACAATCACCGGTT+CGG | 0.526182 | 2_4:-56412314 | Msa0336860:CDS |
| GGAGTTTCTGATTCCACCAA+TGG | 0.528495 | 2_4:+56411979 | None:intergenic |
| GCGCCGTAGAGAACGGAAGT+TGG | 0.529716 | 2_4:+56412132 | None:intergenic |
| AAGTTGGACGGACGTGGAGG+AGG | 0.532912 | 2_4:+56412148 | None:intergenic |
| AAGTTGGTCATGACTGCTGC+TGG | 0.534126 | 2_4:+56410788 | None:intergenic |
| CCTCACTTTGAGTCTTATTG+GGG | 0.541523 | 2_4:+56410891 | None:intergenic |
| GATTGTGTTTGGAAGTTGAA+CGG | 0.542960 | 2_4:-56411915 | Msa0336860:CDS |
| CTCGGAGGCATCGCCACCGT+CGG | 0.543219 | 2_4:+56412071 | None:intergenic |
| TCGGCCCGAACCGGATCACC+CGG | 0.544498 | 2_4:-56412295 | Msa0336860:CDS |
| CGATCATATTTAGGTTGAAG+AGG | 0.545213 | 2_4:-56411179 | Msa0336860:CDS |
| GTTCTCTACGGCGCCGATTG+GGG | 0.546679 | 2_4:-56412123 | Msa0336860:CDS |
| AGCAGCAGTCATGACCAACT+TGG | 0.552750 | 2_4:-56410786 | Msa0336860:CDS |
| CCACCGCCATCACTCTCCTC+CGG | 0.553044 | 2_4:+56411760 | None:intergenic |
| CGTCCAACTTCCGTTCTCTA+CGG | 0.556201 | 2_4:-56412135 | Msa0336860:CDS |
| GAACGGAAGTTGGACGGACG+TGG | 0.556761 | 2_4:+56412142 | None:intergenic |
| AAGCGCCTACGCCGTCCGAT+GGG | 0.559124 | 2_4:-56412208 | Msa0336860:CDS |
| CCAATCGGCGCCGTAGAGAA+CGG | 0.564627 | 2_4:+56412125 | None:intergenic |
| CAACATGAATCCACAATCAC+CGG | 0.570327 | 2_4:-56412319 | Msa0336860:CDS |
| AAATGATGCATCATCCAAGT+TGG | 0.570890 | 2_4:+56410772 | None:intergenic |
| TTTGGAGTTTGATTCAGTAA+CGG | 0.572913 | 2_4:+56412393 | None:intergenic |
| GATGGGAGAGAGAATCGAGC+CGG | 0.579454 | 2_4:+56412276 | None:intergenic |
| ATGGGAGAGAGAATCGAGCC+GGG | 0.583700 | 2_4:+56412277 | None:intergenic |
| CTTTGCGGTGTGAACCGGAT+GGG | 0.583999 | 2_4:+56412259 | None:intergenic |
| TCTTCGTCGCACCGAATCCA+CGG | 0.588772 | 2_4:+56411863 | None:intergenic |
| AACTGCCCATCGGACGGCGT+AGG | 0.589727 | 2_4:+56412203 | None:intergenic |
| CGTAGAGAACGGAAGTTGGA+CGG | 0.593295 | 2_4:+56412136 | None:intergenic |
| GGAGGCATCGCCACCGTCGG+CGG | 0.602626 | 2_4:+56412074 | None:intergenic |
| CGGTGATTGTGGATTCATGT+TGG | 0.604905 | 2_4:+56412320 | None:intergenic |
| TGTTTGGAAGTTGAACGGCT+TGG | 0.605669 | 2_4:-56411910 | Msa0336860:CDS |
| GGATGACGGTGTCGCCTGGT+CGG | 0.607279 | 2_4:+56412169 | None:intergenic |
| TATTGAGGAAGAACATGAAG+AGG | 0.612634 | 2_4:-56411689 | Msa0336860:CDS |
| CCGGAGGAGAGTGATGGCGG+TGG | 0.619622 | 2_4:-56411760 | Msa0336860:CDS |
| ACTTTGCGGTGTGAACCGGA+TGG | 0.620134 | 2_4:+56412258 | None:intergenic |
| GCTTTCGTCGCTGAGATCAA+CGG | 0.620909 | 2_4:+56412227 | None:intergenic |
| AGGTATCCGGAGGAGAGTGA+TGG | 0.623434 | 2_4:-56411766 | Msa0336860:CDS |
| GTTCAAAATTATCTCCGACC+AGG | 0.624222 | 2_4:-56412183 | Msa0336860:CDS |
| GCCGGAGTTGAAGGGAATGA+TGG | 0.624545 | 2_4:-56411736 | Msa0336860:CDS |
| CGACGGTGGCGATGCCTCCG+AGG | 0.636822 | 2_4:-56412070 | Msa0336860:CDS |
| GCGGTGGCGCCGGAGTTGAA+GGG | 0.640757 | 2_4:-56411744 | Msa0336860:CDS |
| ACAGACCCAATGCCTGCTAG+TGG | 0.643490 | 2_4:-56410821 | Msa0336860:CDS |
| CCCCAATAAGACTCAAAGTG+AGG | 0.655344 | 2_4:-56410891 | Msa0336860:CDS |
| TATCCGGAGGAGAGTGATGG+CGG | 0.657096 | 2_4:-56411763 | Msa0336860:CDS |
| TGTTGTTGTAAGGTATCCGG+AGG | 0.667970 | 2_4:-56411776 | Msa0336860:CDS |
| CGGAAGTTGGACGGACGTGG+AGG | 0.669422 | 2_4:+56412145 | None:intergenic |
| ACGGACGTGGAGGAGGATGA+CGG | 0.677052 | 2_4:+56412155 | None:intergenic |
| GCTGTGATTATGGGAAGCCG+TGG | 0.685112 | 2_4:-56411880 | Msa0336860:CDS |
| GATGCTGATGATGAACACAA+AGG | 0.760715 | 2_4:-56411658 | Msa0336860:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAGTTATTTTTAAAAGA+TGG | - | chr2_4:56411749-56411768 | Msa0336860:CDS | 15.0% |
| !!! | ACTTTTCATTGTTATTAATT+TGG | - | chr2_4:56411912-56411931 | Msa0336860:CDS | 15.0% |
| !! | TTAGTATATTTCACATATTA+AGG | + | chr2_4:56412201-56412220 | None:intergenic | 15.0% |
| !!! | TTGTAGTTATTTTTAAAAGA+TGG | - | chr2_4:56411749-56411768 | Msa0336860:CDS | 15.0% |
| !!! | ACTTTTCATTGTTATTAATT+TGG | - | chr2_4:56411912-56411931 | Msa0336860:CDS | 15.0% |
| !! | TTAGTATATTTCACATATTA+AGG | + | chr2_4:56412201-56412220 | None:intergenic | 15.0% |
| !!! | TTTGGATTTTTGGAATTATA+TGG | - | chr2_4:56411955-56411974 | Msa0336860:CDS | 20.0% |
| !!! | TTGGATTTTTGGAATTATAT+GGG | - | chr2_4:56411956-56411975 | Msa0336860:CDS | 20.0% |
| !! | ATTAGTATATTTCACATCTT+AGG | + | chr2_4:56412147-56412166 | None:intergenic | 20.0% |
| !!! | TTTGGATTTTTGGAATTATA+TGG | - | chr2_4:56411955-56411974 | Msa0336860:CDS | 20.0% |
| !!! | TTGGATTTTTGGAATTATAT+GGG | - | chr2_4:56411956-56411975 | Msa0336860:CDS | 20.0% |
| !! | ATTAGTATATTTCACATCTT+AGG | + | chr2_4:56412147-56412166 | None:intergenic | 20.0% |
| !!! | GTTGAATTTTGGTATTCTTT+CGG | + | chr2_4:56410793-56410812 | None:intergenic | 25.0% |
| ! | ATTCATGTTGGAGAAAATTA+CGG | + | chr2_4:56410924-56410943 | None:intergenic | 25.0% |
| ! | TTCACAATGTGAATCTTAAA+CGG | + | chr2_4:56411298-56411317 | None:intergenic | 25.0% |
| !! | AGTGAATATTTTCTATTCGA+TGG | - | chr2_4:56411708-56411727 | Msa0336860:CDS | 25.0% |
| ! | TTAAAAGATGGTTACAAAGT+AGG | - | chr2_4:56411761-56411780 | Msa0336860:CDS | 25.0% |
| !! | TCATTGTTATTAATTTGGCA+TGG | - | chr2_4:56411917-56411936 | Msa0336860:CDS | 25.0% |
| !!! | ATTGTCATGTTTTGGATTTT+TGG | - | chr2_4:56411945-56411964 | Msa0336860:CDS | 25.0% |
| !!! | ATTTTTGGAATTATATGGGT+TGG | - | chr2_4:56411960-56411979 | Msa0336860:CDS | 25.0% |
| !!! | TTTTTGGAATTATATGGGTT+GGG | - | chr2_4:56411961-56411980 | Msa0336860:CDS | 25.0% |
| ! | AATCCAAAAACAAAACACAA+AGG | + | chr2_4:56412004-56412023 | None:intergenic | 25.0% |
| !! | TATGATTGGATTTTGCATAT+TGG | - | chr2_4:56412119-56412138 | Msa0336860:CDS | 25.0% |
| ! | AAAAAAAGACAAGATAGTTG+TGG | - | chr2_4:56412407-56412426 | Msa0336860:CDS | 25.0% |
| !!! | GTTGAATTTTGGTATTCTTT+CGG | + | chr2_4:56410793-56410812 | None:intergenic | 25.0% |
| ! | ATTCATGTTGGAGAAAATTA+CGG | + | chr2_4:56410924-56410943 | None:intergenic | 25.0% |
| ! | TTCACAATGTGAATCTTAAA+CGG | + | chr2_4:56411298-56411317 | None:intergenic | 25.0% |
| !! | AGTGAATATTTTCTATTCGA+TGG | - | chr2_4:56411708-56411727 | Msa0336860:CDS | 25.0% |
| ! | TTAAAAGATGGTTACAAAGT+AGG | - | chr2_4:56411761-56411780 | Msa0336860:CDS | 25.0% |
| !! | TCATTGTTATTAATTTGGCA+TGG | - | chr2_4:56411917-56411936 | Msa0336860:CDS | 25.0% |
| !!! | ATTGTCATGTTTTGGATTTT+TGG | - | chr2_4:56411945-56411964 | Msa0336860:CDS | 25.0% |
| !!! | ATTTTTGGAATTATATGGGT+TGG | - | chr2_4:56411960-56411979 | Msa0336860:CDS | 25.0% |
| !!! | TTTTTGGAATTATATGGGTT+GGG | - | chr2_4:56411961-56411980 | Msa0336860:CDS | 25.0% |
| ! | AATCCAAAAACAAAACACAA+AGG | + | chr2_4:56412004-56412023 | None:intergenic | 25.0% |
| !! | TATGATTGGATTTTGCATAT+TGG | - | chr2_4:56412119-56412138 | Msa0336860:CDS | 25.0% |
| ! | AAAAAAAGACAAGATAGTTG+TGG | - | chr2_4:56412407-56412426 | Msa0336860:CDS | 25.0% |
| ! | GTCTTGATGTTGTTGAATTT+TGG | + | chr2_4:56410804-56410823 | None:intergenic | 30.0% |
| GGAAATCTTTCTTTCTTTCT+TGG | + | chr2_4:56410826-56410845 | None:intergenic | 30.0% | |
| ! | TTTGGAGTTTGATTCAGTAA+CGG | + | chr2_4:56410863-56410882 | None:intergenic | 30.0% |
| AAGTTGCGCAGATTAATATT+TGG | + | chr2_4:56410881-56410900 | None:intergenic | 30.0% | |
| AATATTAATCTGCGCAACTT+TGG | - | chr2_4:56410881-56410900 | Msa0336860:CDS | 30.0% | |
| !!! | TGGAGAAAATTACGGTTTTT+TGG | + | chr2_4:56410916-56410935 | None:intergenic | 30.0% |
| TGTGAAAGATCATGATATGA+AGG | - | chr2_4:56411312-56411331 | Msa0336860:intron | 30.0% | |
| TATGAAGGAAAGATTGTGTT+TGG | - | chr2_4:56411327-56411346 | Msa0336860:intron | 30.0% | |
| !! | AGAAGATGATGGATTTCTAT+TGG | - | chr2_4:56411792-56411811 | Msa0336860:CDS | 30.0% |
| GTTAAATGACTATGTACTGA+CGG | + | chr2_4:56411842-56411861 | None:intergenic | 30.0% | |
| !!! | CTTCCTTTGTGTTTTGTTTT+TGG | - | chr2_4:56411998-56412017 | Msa0336860:CDS | 30.0% |
| ! | CTATGATAGCGATCATATTT+AGG | - | chr2_4:56412065-56412084 | Msa0336860:CDS | 30.0% |
| CATATTAAGGAGCAAACAAA+GGG | + | chr2_4:56412188-56412207 | None:intergenic | 30.0% | |
| ACATATTAAGGAGCAAACAA+AGG | + | chr2_4:56412189-56412208 | None:intergenic | 30.0% | |
| ! | GTCTTGATGTTGTTGAATTT+TGG | + | chr2_4:56410804-56410823 | None:intergenic | 30.0% |
| GGAAATCTTTCTTTCTTTCT+TGG | + | chr2_4:56410826-56410845 | None:intergenic | 30.0% | |
| ! | TTTGGAGTTTGATTCAGTAA+CGG | + | chr2_4:56410863-56410882 | None:intergenic | 30.0% |
| AAGTTGCGCAGATTAATATT+TGG | + | chr2_4:56410881-56410900 | None:intergenic | 30.0% | |
| AATATTAATCTGCGCAACTT+TGG | - | chr2_4:56410881-56410900 | Msa0336860:CDS | 30.0% | |
| !!! | TGGAGAAAATTACGGTTTTT+TGG | + | chr2_4:56410916-56410935 | None:intergenic | 30.0% |
| TGTGAAAGATCATGATATGA+AGG | - | chr2_4:56411312-56411331 | Msa0336860:intron | 30.0% | |
| TATGAAGGAAAGATTGTGTT+TGG | - | chr2_4:56411327-56411346 | Msa0336860:intron | 30.0% | |
| !! | AGAAGATGATGGATTTCTAT+TGG | - | chr2_4:56411792-56411811 | Msa0336860:CDS | 30.0% |
| GTTAAATGACTATGTACTGA+CGG | + | chr2_4:56411842-56411861 | None:intergenic | 30.0% | |
| !!! | CTTCCTTTGTGTTTTGTTTT+TGG | - | chr2_4:56411998-56412017 | Msa0336860:CDS | 30.0% |
| ! | CTATGATAGCGATCATATTT+AGG | - | chr2_4:56412065-56412084 | Msa0336860:CDS | 30.0% |
| CATATTAAGGAGCAAACAAA+GGG | + | chr2_4:56412188-56412207 | None:intergenic | 30.0% | |
| ACATATTAAGGAGCAAACAA+AGG | + | chr2_4:56412189-56412208 | None:intergenic | 30.0% | |
| ! | GATAATTTTGAACTGCCCAT+CGG | + | chr2_4:56411063-56411082 | None:intergenic | 35.0% |
| !!! | CATTTTTTGACGTGATTCCT+CGG | + | chr2_4:56411203-56411222 | None:intergenic | 35.0% |
| GATTGTGTTTGGAAGTTGAA+CGG | - | chr2_4:56411338-56411357 | Msa0336860:intron | 35.0% | |
| ! | TTTGTCCTGTTGTTGTTGTA+AGG | - | chr2_4:56411467-56411486 | Msa0336860:intron | 35.0% |
| ! | TGTTGTTGTTGTAAGGTATC+CGG | - | chr2_4:56411474-56411493 | Msa0336860:intron | 35.0% |
| TGAACTTCATCCTGTTATTG+AGG | - | chr2_4:56411549-56411568 | Msa0336860:intron | 35.0% | |
| TCATGTTCTTCCTCAATAAC+AGG | + | chr2_4:56411562-56411581 | None:intergenic | 35.0% | |
| TATTGAGGAAGAACATGAAG+AGG | - | chr2_4:56411564-56411583 | Msa0336860:intron | 35.0% | |
| !! | AGATGATGGATTTCTATTGG+AGG | - | chr2_4:56411795-56411814 | Msa0336860:CDS | 35.0% |
| ! | GTTATTAATTTGGCATGGAG+TGG | - | chr2_4:56411922-56411941 | Msa0336860:CDS | 35.0% |
| !! | CGATCATATTTAGGTTGAAG+AGG | - | chr2_4:56412074-56412093 | Msa0336860:CDS | 35.0% |
| ! | CACTTTCAGGGTATTATGAT+TGG | - | chr2_4:56412105-56412124 | Msa0336860:CDS | 35.0% |
| ACTTCAACACATGTTGTTCA+AGG | + | chr2_4:56412245-56412264 | None:intergenic | 35.0% | |
| TTGAACAACATGTGTTGAAG+TGG | - | chr2_4:56412244-56412263 | Msa0336860:CDS | 35.0% | |
| TGAACAACATGTGTTGAAGT+GGG | - | chr2_4:56412245-56412264 | Msa0336860:CDS | 35.0% | |
| TTTCGTATCCAATAGAGCTT+TGG | - | chr2_4:56412290-56412309 | Msa0336860:CDS | 35.0% | |
| AGAATCATCCAAAGCTCTAT+TGG | + | chr2_4:56412301-56412320 | None:intergenic | 35.0% | |
| !! | ACCTCACTTTGAGTCTTATT+GGG | + | chr2_4:56412366-56412385 | None:intergenic | 35.0% |
| ! | AACCTCACTTTGAGTCTTAT+TGG | + | chr2_4:56412367-56412386 | None:intergenic | 35.0% |
| ATAAGACTCAAAGTGAGGTT+AGG | - | chr2_4:56412367-56412386 | Msa0336860:CDS | 35.0% | |
| AAATGATGCATCATCCAAGT+TGG | + | chr2_4:56412484-56412503 | None:intergenic | 35.0% | |
| CTTGGATGATGCATCATTTA+AGG | - | chr2_4:56412485-56412504 | Msa0336860:exon | 35.0% | |
| ! | GATAATTTTGAACTGCCCAT+CGG | + | chr2_4:56411063-56411082 | None:intergenic | 35.0% |
| !!! | CATTTTTTGACGTGATTCCT+CGG | + | chr2_4:56411203-56411222 | None:intergenic | 35.0% |
| GATTGTGTTTGGAAGTTGAA+CGG | - | chr2_4:56411338-56411357 | Msa0336860:intron | 35.0% | |
| ! | TTTGTCCTGTTGTTGTTGTA+AGG | - | chr2_4:56411467-56411486 | Msa0336860:intron | 35.0% |
| ! | TGTTGTTGTTGTAAGGTATC+CGG | - | chr2_4:56411474-56411493 | Msa0336860:intron | 35.0% |
| TGAACTTCATCCTGTTATTG+AGG | - | chr2_4:56411549-56411568 | Msa0336860:intron | 35.0% | |
| TCATGTTCTTCCTCAATAAC+AGG | + | chr2_4:56411562-56411581 | None:intergenic | 35.0% | |
| TATTGAGGAAGAACATGAAG+AGG | - | chr2_4:56411564-56411583 | Msa0336860:intron | 35.0% | |
| !! | AGATGATGGATTTCTATTGG+AGG | - | chr2_4:56411795-56411814 | Msa0336860:CDS | 35.0% |
| ! | GTTATTAATTTGGCATGGAG+TGG | - | chr2_4:56411922-56411941 | Msa0336860:CDS | 35.0% |
| !! | CGATCATATTTAGGTTGAAG+AGG | - | chr2_4:56412074-56412093 | Msa0336860:CDS | 35.0% |
| ! | CACTTTCAGGGTATTATGAT+TGG | - | chr2_4:56412105-56412124 | Msa0336860:CDS | 35.0% |
| ACTTCAACACATGTTGTTCA+AGG | + | chr2_4:56412245-56412264 | None:intergenic | 35.0% | |
| TTGAACAACATGTGTTGAAG+TGG | - | chr2_4:56412244-56412263 | Msa0336860:CDS | 35.0% | |
| TGAACAACATGTGTTGAAGT+GGG | - | chr2_4:56412245-56412264 | Msa0336860:CDS | 35.0% | |
| TTTCGTATCCAATAGAGCTT+TGG | - | chr2_4:56412290-56412309 | Msa0336860:CDS | 35.0% | |
| AGAATCATCCAAAGCTCTAT+TGG | + | chr2_4:56412301-56412320 | None:intergenic | 35.0% | |
| !! | ACCTCACTTTGAGTCTTATT+GGG | + | chr2_4:56412366-56412385 | None:intergenic | 35.0% |
| ! | AACCTCACTTTGAGTCTTAT+TGG | + | chr2_4:56412367-56412386 | None:intergenic | 35.0% |
| ATAAGACTCAAAGTGAGGTT+AGG | - | chr2_4:56412367-56412386 | Msa0336860:CDS | 35.0% | |
| AAATGATGCATCATCCAAGT+TGG | + | chr2_4:56412484-56412503 | None:intergenic | 35.0% | |
| CTTGGATGATGCATCATTTA+AGG | - | chr2_4:56412485-56412504 | Msa0336860:exon | 35.0% | |
| !! | GTAACGGATCAAAGAGTTTG+AGG | + | chr2_4:56410847-56410866 | None:intergenic | 40.0% |
| CAACATGAATCCACAATCAC+CGG | - | chr2_4:56410934-56410953 | Msa0336860:CDS | 40.0% | |
| GTTCAAAATTATCTCCGACC+AGG | - | chr2_4:56411070-56411089 | Msa0336860:intron | 40.0% | |
| CGAGGAATCACGTCAAAAAA+TGG | - | chr2_4:56411201-56411220 | Msa0336860:intron | 40.0% | |
| !!! | AAGATCGGTTGCTTTTGTTG+AGG | + | chr2_4:56411248-56411267 | None:intergenic | 40.0% |
| ! | TGGATTGAGTGCTGTGATTA+TGG | - | chr2_4:56411363-56411382 | Msa0336860:intron | 40.0% |
| ! | GGATTGAGTGCTGTGATTAT+GGG | - | chr2_4:56411364-56411383 | Msa0336860:intron | 40.0% |
| ! | CGACGAAGAGAAGTTCTAAT+GGG | - | chr2_4:56411404-56411423 | Msa0336860:intron | 40.0% |
| ! | AGAAGTTCTAATGGGAAGCT+TGG | - | chr2_4:56411412-56411431 | Msa0336860:intron | 40.0% |
| GGATACCTTACAACAACAAC+AGG | + | chr2_4:56411475-56411494 | None:intergenic | 40.0% | |
| ! | GATGCTGATGATGAACACAA+AGG | - | chr2_4:56411595-56411614 | Msa0336860:intron | 40.0% |
| AGGCTTACATGAGAAGATGA+TGG | - | chr2_4:56411781-56411800 | Msa0336860:CDS | 40.0% | |
| ! | GATGGATTTCTATTGGAGGA+CGG | - | chr2_4:56411799-56411818 | Msa0336860:CDS | 40.0% |
| !!! | TGGAGTGGATTGTCATGTTT+TGG | - | chr2_4:56411937-56411956 | Msa0336860:CDS | 40.0% |
| !! | GAATTATATGGGTTGGGAGA+GGG | - | chr2_4:56411967-56411986 | Msa0336860:CDS | 40.0% |
| !! | TTTGCAATTCGAGTTGAGCT+TGG | - | chr2_4:56412035-56412054 | Msa0336860:CDS | 40.0% |
| AGAGGAATGACATCACTTTC+AGG | - | chr2_4:56412092-56412111 | Msa0336860:CDS | 40.0% | |
| GAGGAATGACATCACTTTCA+GGG | - | chr2_4:56412093-56412112 | Msa0336860:CDS | 40.0% | |
| !! | TTGAGTCTTATTGGGGATCT+TGG | + | chr2_4:56412358-56412377 | None:intergenic | 40.0% |
| !! | CCTCACTTTGAGTCTTATTG+GGG | + | chr2_4:56412365-56412384 | None:intergenic | 40.0% |
| !! | GTAACGGATCAAAGAGTTTG+AGG | + | chr2_4:56410847-56410866 | None:intergenic | 40.0% |
| CAACATGAATCCACAATCAC+CGG | - | chr2_4:56410934-56410953 | Msa0336860:CDS | 40.0% | |
| GTTCAAAATTATCTCCGACC+AGG | - | chr2_4:56411070-56411089 | Msa0336860:intron | 40.0% | |
| CGAGGAATCACGTCAAAAAA+TGG | - | chr2_4:56411201-56411220 | Msa0336860:intron | 40.0% | |
| !!! | AAGATCGGTTGCTTTTGTTG+AGG | + | chr2_4:56411248-56411267 | None:intergenic | 40.0% |
| ! | TGGATTGAGTGCTGTGATTA+TGG | - | chr2_4:56411363-56411382 | Msa0336860:intron | 40.0% |
| ! | GGATTGAGTGCTGTGATTAT+GGG | - | chr2_4:56411364-56411383 | Msa0336860:intron | 40.0% |
| ! | CGACGAAGAGAAGTTCTAAT+GGG | - | chr2_4:56411404-56411423 | Msa0336860:intron | 40.0% |
| ! | AGAAGTTCTAATGGGAAGCT+TGG | - | chr2_4:56411412-56411431 | Msa0336860:intron | 40.0% |
| GGATACCTTACAACAACAAC+AGG | + | chr2_4:56411475-56411494 | None:intergenic | 40.0% | |
| ! | GATGCTGATGATGAACACAA+AGG | - | chr2_4:56411595-56411614 | Msa0336860:intron | 40.0% |
| AGGCTTACATGAGAAGATGA+TGG | - | chr2_4:56411781-56411800 | Msa0336860:CDS | 40.0% | |
| ! | GATGGATTTCTATTGGAGGA+CGG | - | chr2_4:56411799-56411818 | Msa0336860:CDS | 40.0% |
| !!! | TGGAGTGGATTGTCATGTTT+TGG | - | chr2_4:56411937-56411956 | Msa0336860:CDS | 40.0% |
| !! | GAATTATATGGGTTGGGAGA+GGG | - | chr2_4:56411967-56411986 | Msa0336860:CDS | 40.0% |
| !! | TTTGCAATTCGAGTTGAGCT+TGG | - | chr2_4:56412035-56412054 | Msa0336860:CDS | 40.0% |
| AGAGGAATGACATCACTTTC+AGG | - | chr2_4:56412092-56412111 | Msa0336860:CDS | 40.0% | |
| GAGGAATGACATCACTTTCA+GGG | - | chr2_4:56412093-56412112 | Msa0336860:CDS | 40.0% | |
| !! | TTGAGTCTTATTGGGGATCT+TGG | + | chr2_4:56412358-56412377 | None:intergenic | 40.0% |
| !! | CCTCACTTTGAGTCTTATTG+GGG | + | chr2_4:56412365-56412384 | None:intergenic | 40.0% |
| CGGTGATTGTGGATTCATGT+TGG | + | chr2_4:56410936-56410955 | None:intergenic | 45.0% | |
| ! | TGAATCCACAATCACCGGTT+CGG | - | chr2_4:56410939-56410958 | Msa0336860:CDS | 45.0% |
| ! | ATTTTGAACTGCCCATCGGA+CGG | + | chr2_4:56411059-56411078 | None:intergenic | 45.0% |
| ! | TTTTTGACGTGATTCCTCGG+AGG | + | chr2_4:56411200-56411219 | None:intergenic | 45.0% |
| AACCGATCTTGCACAACCAT+TGG | - | chr2_4:56411258-56411277 | Msa0336860:intron | 45.0% | |
| CACCAATGGTTGTGCAAGAT+CGG | + | chr2_4:56411263-56411282 | None:intergenic | 45.0% | |
| GGAGTTTCTGATTCCACCAA+TGG | + | chr2_4:56411277-56411296 | None:intergenic | 45.0% | |
| TGTTTGGAAGTTGAACGGCT+TGG | - | chr2_4:56411343-56411362 | Msa0336860:intron | 45.0% | |
| ATTATGGGAAGCCGTGGATT+CGG | - | chr2_4:56411379-56411398 | Msa0336860:intron | 45.0% | |
| ! | GCGACGAAGAGAAGTTCTAA+TGG | - | chr2_4:56411403-56411422 | Msa0336860:intron | 45.0% |
| ! | TGTTGTTGTAAGGTATCCGG+AGG | - | chr2_4:56411477-56411496 | Msa0336860:intron | 45.0% |
| ACCATCATTCCCTTCAACTC+CGG | + | chr2_4:56411521-56411540 | None:intergenic | 45.0% | |
| !! | GGAATTATATGGGTTGGGAG+AGG | - | chr2_4:56411966-56411985 | Msa0336860:CDS | 45.0% |
| ACAACATGTGTTGAAGTGGG+AGG | - | chr2_4:56412248-56412267 | Msa0336860:CDS | 45.0% | |
| CCCCAATAAGACTCAAAGTG+AGG | - | chr2_4:56412362-56412381 | Msa0336860:CDS | 45.0% | |
| CGGTGATTGTGGATTCATGT+TGG | + | chr2_4:56410936-56410955 | None:intergenic | 45.0% | |
| ! | TGAATCCACAATCACCGGTT+CGG | - | chr2_4:56410939-56410958 | Msa0336860:CDS | 45.0% |
| ! | ATTTTGAACTGCCCATCGGA+CGG | + | chr2_4:56411059-56411078 | None:intergenic | 45.0% |
| ! | TTTTTGACGTGATTCCTCGG+AGG | + | chr2_4:56411200-56411219 | None:intergenic | 45.0% |
| AACCGATCTTGCACAACCAT+TGG | - | chr2_4:56411258-56411277 | Msa0336860:intron | 45.0% | |
| CACCAATGGTTGTGCAAGAT+CGG | + | chr2_4:56411263-56411282 | None:intergenic | 45.0% | |
| GGAGTTTCTGATTCCACCAA+TGG | + | chr2_4:56411277-56411296 | None:intergenic | 45.0% | |
| TGTTTGGAAGTTGAACGGCT+TGG | - | chr2_4:56411343-56411362 | Msa0336860:intron | 45.0% | |
| ATTATGGGAAGCCGTGGATT+CGG | - | chr2_4:56411379-56411398 | Msa0336860:intron | 45.0% | |
| ! | GCGACGAAGAGAAGTTCTAA+TGG | - | chr2_4:56411403-56411422 | Msa0336860:intron | 45.0% |
| ! | TGTTGTTGTAAGGTATCCGG+AGG | - | chr2_4:56411477-56411496 | Msa0336860:intron | 45.0% |
| ACCATCATTCCCTTCAACTC+CGG | + | chr2_4:56411521-56411540 | None:intergenic | 45.0% | |
| !! | GGAATTATATGGGTTGGGAG+AGG | - | chr2_4:56411966-56411985 | Msa0336860:CDS | 45.0% |
| ACAACATGTGTTGAAGTGGG+AGG | - | chr2_4:56412248-56412267 | Msa0336860:CDS | 45.0% | |
| CCCCAATAAGACTCAAAGTG+AGG | - | chr2_4:56412362-56412381 | Msa0336860:CDS | 45.0% | |
| GCTTTCGTCGCTGAGATCAA+CGG | + | chr2_4:56411029-56411048 | None:intergenic | 50.0% | |
| CGTAGAGAACGGAAGTTGGA+CGG | + | chr2_4:56411120-56411139 | None:intergenic | 50.0% | |
| CGTCCAACTTCCGTTCTCTA+CGG | - | chr2_4:56411118-56411137 | Msa0336860:intron | 50.0% | |
| CGATCTTGCACAACCATTGG+TGG | - | chr2_4:56411261-56411280 | Msa0336860:intron | 50.0% | |
| TGTGTTGAAGTGGGAGGAAG+AGG | - | chr2_4:56412254-56412273 | Msa0336860:CDS | 50.0% | |
| ! | AAGTTGGTCATGACTGCTGC+TGG | + | chr2_4:56412468-56412487 | None:intergenic | 50.0% |
| AGCAGCAGTCATGACCAACT+TGG | - | chr2_4:56412467-56412486 | Msa0336860:CDS | 50.0% | |
| GCTTTCGTCGCTGAGATCAA+CGG | + | chr2_4:56411029-56411048 | None:intergenic | 50.0% | |
| CGTAGAGAACGGAAGTTGGA+CGG | + | chr2_4:56411120-56411139 | None:intergenic | 50.0% | |
| CGTCCAACTTCCGTTCTCTA+CGG | - | chr2_4:56411118-56411137 | Msa0336860:intron | 50.0% | |
| CGATCTTGCACAACCATTGG+TGG | - | chr2_4:56411261-56411280 | Msa0336860:intron | 50.0% | |
| TGTGTTGAAGTGGGAGGAAG+AGG | - | chr2_4:56412254-56412273 | Msa0336860:CDS | 50.0% | |
| ! | AAGTTGGTCATGACTGCTGC+TGG | + | chr2_4:56412468-56412487 | None:intergenic | 50.0% |
| AGCAGCAGTCATGACCAACT+TGG | - | chr2_4:56412467-56412486 | Msa0336860:CDS | 50.0% | |
| ATGGGAGAGAGAATCGAGCC+GGG | + | chr2_4:56410979-56410998 | None:intergenic | 55.0% | |
| GATGGGAGAGAGAATCGAGC+CGG | + | chr2_4:56410980-56410999 | None:intergenic | 55.0% | |
| GCTCGATTCTCTCTCCCATC+CGG | - | chr2_4:56410980-56410999 | Msa0336860:CDS | 55.0% | |
| CTTTGCGGTGTGAACCGGAT+GGG | + | chr2_4:56410997-56411016 | None:intergenic | 55.0% | |
| ACTTTGCGGTGTGAACCGGA+TGG | + | chr2_4:56410998-56411017 | None:intergenic | 55.0% | |
| TGCGACTTTGCGGTGTGAAC+CGG | + | chr2_4:56411002-56411021 | None:intergenic | 55.0% | |
| CAACGGCGATTGCGACTTTG+CGG | + | chr2_4:56411012-56411031 | None:intergenic | 55.0% | |
| GCTGTGATTATGGGAAGCCG+TGG | - | chr2_4:56411373-56411392 | Msa0336860:intron | 55.0% | |
| TCTTCGTCGCACCGAATCCA+CGG | + | chr2_4:56411393-56411412 | None:intergenic | 55.0% | |
| AGGTATCCGGAGGAGAGTGA+TGG | - | chr2_4:56411487-56411506 | Msa0336860:intron | 55.0% | |
| TATCCGGAGGAGAGTGATGG+CGG | - | chr2_4:56411490-56411509 | Msa0336860:intron | 55.0% | |
| GCCGGAGTTGAAGGGAATGA+TGG | - | chr2_4:56411517-56411536 | Msa0336860:intron | 55.0% | |
| ACAGACCCAATGCCTGCTAG+TGG | - | chr2_4:56412432-56412451 | Msa0336860:CDS | 55.0% | |
| ATGGGAGAGAGAATCGAGCC+GGG | + | chr2_4:56410979-56410998 | None:intergenic | 55.0% | |
| GATGGGAGAGAGAATCGAGC+CGG | + | chr2_4:56410980-56410999 | None:intergenic | 55.0% | |
| GCTCGATTCTCTCTCCCATC+CGG | - | chr2_4:56410980-56410999 | Msa0336860:CDS | 55.0% | |
| CTTTGCGGTGTGAACCGGAT+GGG | + | chr2_4:56410997-56411016 | None:intergenic | 55.0% | |
| ACTTTGCGGTGTGAACCGGA+TGG | + | chr2_4:56410998-56411017 | None:intergenic | 55.0% | |
| TGCGACTTTGCGGTGTGAAC+CGG | + | chr2_4:56411002-56411021 | None:intergenic | 55.0% | |
| CAACGGCGATTGCGACTTTG+CGG | + | chr2_4:56411012-56411031 | None:intergenic | 55.0% | |
| GCTGTGATTATGGGAAGCCG+TGG | - | chr2_4:56411373-56411392 | Msa0336860:intron | 55.0% | |
| TCTTCGTCGCACCGAATCCA+CGG | + | chr2_4:56411393-56411412 | None:intergenic | 55.0% | |
| AGGTATCCGGAGGAGAGTGA+TGG | - | chr2_4:56411487-56411506 | Msa0336860:intron | 55.0% | |
| TATCCGGAGGAGAGTGATGG+CGG | - | chr2_4:56411490-56411509 | Msa0336860:intron | 55.0% | |
| GCCGGAGTTGAAGGGAATGA+TGG | - | chr2_4:56411517-56411536 | Msa0336860:intron | 55.0% | |
| ACAGACCCAATGCCTGCTAG+TGG | - | chr2_4:56412432-56412451 | Msa0336860:CDS | 55.0% | |
| GAGAATCGAGCCGGGTGATC+CGG | + | chr2_4:56410971-56410990 | None:intergenic | 60.0% | |
| ACGGACGTGGAGGAGGATGA+CGG | + | chr2_4:56411101-56411120 | None:intergenic | 60.0% | |
| AAGTTGGACGGACGTGGAGG+AGG | + | chr2_4:56411108-56411127 | None:intergenic | 60.0% | |
| GAACGGAAGTTGGACGGACG+TGG | + | chr2_4:56411114-56411133 | None:intergenic | 60.0% | |
| GCGCCGTAGAGAACGGAAGT+TGG | + | chr2_4:56411124-56411143 | None:intergenic | 60.0% | |
| CCAATCGGCGCCGTAGAGAA+CGG | + | chr2_4:56411131-56411150 | None:intergenic | 60.0% | |
| !! | CGTTCTCTACGGCGCCGATT+GGG | - | chr2_4:56411129-56411148 | Msa0336860:intron | 60.0% |
| !! | GTTCTCTACGGCGCCGATTG+GGG | - | chr2_4:56411130-56411149 | Msa0336860:intron | 60.0% |
| ! | CCGTGCCACTAGCAGGCATT+GGG | + | chr2_4:56412440-56412459 | None:intergenic | 60.0% |
| CCCAATGCCTGCTAGTGGCA+CGG | - | chr2_4:56412437-56412456 | Msa0336860:CDS | 60.0% | |
| CCAATGCCTGCTAGTGGCAC+GGG | - | chr2_4:56412438-56412457 | Msa0336860:CDS | 60.0% | |
| GAGAATCGAGCCGGGTGATC+CGG | + | chr2_4:56410971-56410990 | None:intergenic | 60.0% | |
| ACGGACGTGGAGGAGGATGA+CGG | + | chr2_4:56411101-56411120 | None:intergenic | 60.0% | |
| AAGTTGGACGGACGTGGAGG+AGG | + | chr2_4:56411108-56411127 | None:intergenic | 60.0% | |
| GAACGGAAGTTGGACGGACG+TGG | + | chr2_4:56411114-56411133 | None:intergenic | 60.0% | |
| GCGCCGTAGAGAACGGAAGT+TGG | + | chr2_4:56411124-56411143 | None:intergenic | 60.0% | |
| CCAATCGGCGCCGTAGAGAA+CGG | + | chr2_4:56411131-56411150 | None:intergenic | 60.0% | |
| !! | CGTTCTCTACGGCGCCGATT+GGG | - | chr2_4:56411129-56411148 | Msa0336860:intron | 60.0% |
| !! | GTTCTCTACGGCGCCGATTG+GGG | - | chr2_4:56411130-56411149 | Msa0336860:intron | 60.0% |
| ! | CCGTGCCACTAGCAGGCATT+GGG | + | chr2_4:56412440-56412459 | None:intergenic | 60.0% |
| CCCAATGCCTGCTAGTGGCA+CGG | - | chr2_4:56412437-56412456 | Msa0336860:CDS | 60.0% | |
| CCAATGCCTGCTAGTGGCAC+GGG | - | chr2_4:56412438-56412457 | Msa0336860:CDS | 60.0% | |
| TCGGGCCGAACCGGTGATTG+TGG | + | chr2_4:56410947-56410966 | None:intergenic | 65.0% | |
| !! | ATCACCGGTTCGGCCCGAAC+CGG | - | chr2_4:56410949-56410968 | Msa0336860:CDS | 65.0% |
| !! | TGATCCGGTTCGGGCCGAAC+CGG | + | chr2_4:56410956-56410975 | None:intergenic | 65.0% |
| TCGAGCCGGGTGATCCGGTT+CGG | + | chr2_4:56410966-56410985 | None:intergenic | 65.0% | |
| ! | AAAGCGCCTACGCCGTCCGA+TGG | - | chr2_4:56411044-56411063 | Msa0336860:intron | 65.0% |
| AAGCGCCTACGCCGTCCGAT+GGG | - | chr2_4:56411045-56411064 | Msa0336860:intron | 65.0% | |
| AACTGCCCATCGGACGGCGT+AGG | + | chr2_4:56411053-56411072 | None:intergenic | 65.0% | |
| !! | GGATGACGGTGTCGCCTGGT+CGG | + | chr2_4:56411087-56411106 | None:intergenic | 65.0% |
| !! | AGGAGGATGACGGTGTCGCC+TGG | + | chr2_4:56411091-56411110 | None:intergenic | 65.0% |
| CGGAAGTTGGACGGACGTGG+AGG | + | chr2_4:56411111-56411130 | None:intergenic | 65.0% | |
| !! | CCGTTCTCTACGGCGCCGAT+TGG | - | chr2_4:56411128-56411147 | Msa0336860:intron | 65.0% |
| GGAGGGGACGGAACCCCAAT+CGG | + | chr2_4:56411146-56411165 | None:intergenic | 65.0% | |
| CCACCGCCATCACTCTCCTC+CGG | + | chr2_4:56411496-56411515 | None:intergenic | 65.0% | |
| ! | CCCGTGCCACTAGCAGGCAT+TGG | + | chr2_4:56412441-56412460 | None:intergenic | 65.0% |
| TCGGGCCGAACCGGTGATTG+TGG | + | chr2_4:56410947-56410966 | None:intergenic | 65.0% | |
| !! | ATCACCGGTTCGGCCCGAAC+CGG | - | chr2_4:56410949-56410968 | Msa0336860:CDS | 65.0% |
| !! | TGATCCGGTTCGGGCCGAAC+CGG | + | chr2_4:56410956-56410975 | None:intergenic | 65.0% |
| TCGAGCCGGGTGATCCGGTT+CGG | + | chr2_4:56410966-56410985 | None:intergenic | 65.0% | |
| ! | AAAGCGCCTACGCCGTCCGA+TGG | - | chr2_4:56411044-56411063 | Msa0336860:intron | 65.0% |
| AAGCGCCTACGCCGTCCGAT+GGG | - | chr2_4:56411045-56411064 | Msa0336860:intron | 65.0% | |
| AACTGCCCATCGGACGGCGT+AGG | + | chr2_4:56411053-56411072 | None:intergenic | 65.0% | |
| !! | GGATGACGGTGTCGCCTGGT+CGG | + | chr2_4:56411087-56411106 | None:intergenic | 65.0% |
| !! | AGGAGGATGACGGTGTCGCC+TGG | + | chr2_4:56411091-56411110 | None:intergenic | 65.0% |
| CGGAAGTTGGACGGACGTGG+AGG | + | chr2_4:56411111-56411130 | None:intergenic | 65.0% | |
| !! | CCGTTCTCTACGGCGCCGAT+TGG | - | chr2_4:56411128-56411147 | Msa0336860:intron | 65.0% |
| GGAGGGGACGGAACCCCAAT+CGG | + | chr2_4:56411146-56411165 | None:intergenic | 65.0% | |
| CCACCGCCATCACTCTCCTC+CGG | + | chr2_4:56411496-56411515 | None:intergenic | 65.0% | |
| ! | CCCGTGCCACTAGCAGGCAT+TGG | + | chr2_4:56412441-56412460 | None:intergenic | 65.0% |
| TCGGCCCGAACCGGATCACC+CGG | - | chr2_4:56410958-56410977 | Msa0336860:CDS | 70.0% | |
| CGAGCCGGGTGATCCGGTTC+GGG | + | chr2_4:56410965-56410984 | None:intergenic | 70.0% | |
| !! | CTCGGAGGCATCGCCACCGT+CGG | + | chr2_4:56411185-56411204 | None:intergenic | 70.0% |
| !! | CCGGAGGAGAGTGATGGCGG+TGG | - | chr2_4:56411493-56411512 | Msa0336860:intron | 70.0% |
| !! | GAGAGTGATGGCGGTGGCGC+CGG | - | chr2_4:56411499-56411518 | Msa0336860:intron | 70.0% |
| ! | GCGGTGGCGCCGGAGTTGAA+GGG | - | chr2_4:56411509-56411528 | Msa0336860:intron | 70.0% |
| ! | GGCACTCCCGTGCCACTAGC+AGG | + | chr2_4:56412447-56412466 | None:intergenic | 70.0% |
| TCGGCCCGAACCGGATCACC+CGG | - | chr2_4:56410958-56410977 | Msa0336860:CDS | 70.0% | |
| CGAGCCGGGTGATCCGGTTC+GGG | + | chr2_4:56410965-56410984 | None:intergenic | 70.0% | |
| !! | CTCGGAGGCATCGCCACCGT+CGG | + | chr2_4:56411185-56411204 | None:intergenic | 70.0% |
| !! | CCGGAGGAGAGTGATGGCGG+TGG | - | chr2_4:56411493-56411512 | Msa0336860:intron | 70.0% |
| !! | GAGAGTGATGGCGGTGGCGC+CGG | - | chr2_4:56411499-56411518 | Msa0336860:intron | 70.0% |
| ! | GCGGTGGCGCCGGAGTTGAA+GGG | - | chr2_4:56411509-56411528 | Msa0336860:intron | 70.0% |
| ! | GGCACTCCCGTGCCACTAGC+AGG | + | chr2_4:56412447-56412466 | None:intergenic | 70.0% |
| ATCGCCACCGTCGGCGGTGG+CGG | + | chr2_4:56411176-56411195 | None:intergenic | 75.0% | |
| !! | GGAGGCATCGCCACCGTCGG+CGG | + | chr2_4:56411182-56411201 | None:intergenic | 75.0% |
| CGACGGTGGCGATGCCTCCG+AGG | - | chr2_4:56411183-56411202 | Msa0336860:intron | 75.0% | |
| ! | GGCGGTGGCGCCGGAGTTGA+AGG | - | chr2_4:56411508-56411527 | Msa0336860:intron | 75.0% |
| ATCGCCACCGTCGGCGGTGG+CGG | + | chr2_4:56411176-56411195 | None:intergenic | 75.0% | |
| !! | GGAGGCATCGCCACCGTCGG+CGG | + | chr2_4:56411182-56411201 | None:intergenic | 75.0% |
| CGACGGTGGCGATGCCTCCG+AGG | - | chr2_4:56411183-56411202 | Msa0336860:intron | 75.0% | |
| ! | GGCGGTGGCGCCGGAGTTGA+AGG | - | chr2_4:56411508-56411527 | Msa0336860:intron | 75.0% |
| ! | GGCATCGCCACCGTCGGCGG+TGG | + | chr2_4:56411179-56411198 | None:intergenic | 80.0% |
| ! | GGCATCGCCACCGTCGGCGG+TGG | + | chr2_4:56411179-56411198 | None:intergenic | 80.0% |
| ! | GGCGGCGGTGGGGGAGGGGA+CGG | + | chr2_4:56411158-56411177 | None:intergenic | 85.0% |
| !! | CGGTGGCGGCGGTGGGGGAG+GGG | + | chr2_4:56411162-56411181 | None:intergenic | 85.0% |
| !! | GCGGTGGCGGCGGTGGGGGA+GGG | + | chr2_4:56411163-56411182 | None:intergenic | 85.0% |
| !! | GTCGGCGGTGGCGGCGGTGG+GGG | + | chr2_4:56411167-56411186 | None:intergenic | 85.0% |
| !! | CGTCGGCGGTGGCGGCGGTG+GGG | + | chr2_4:56411168-56411187 | None:intergenic | 85.0% |
| !! | CCGTCGGCGGTGGCGGCGGT+GGG | + | chr2_4:56411169-56411188 | None:intergenic | 85.0% |
| ! | CCCACCGCCGCCACCGCCGA+CGG | - | chr2_4:56411166-56411185 | Msa0336860:CDS | 85.0% |
| !! | ACCGTCGGCGGTGGCGGCGG+TGG | + | chr2_4:56411170-56411189 | None:intergenic | 85.0% |
| ! | ACCGCCGCCACCGCCGACGG+TGG | - | chr2_4:56411169-56411188 | Msa0336860:CDS | 85.0% |
| !! | GCCACCGTCGGCGGTGGCGG+CGG | + | chr2_4:56411173-56411192 | None:intergenic | 85.0% |
| ! | GGCGGCGGTGGGGGAGGGGA+CGG | + | chr2_4:56411158-56411177 | None:intergenic | 85.0% |
| !! | CGGTGGCGGCGGTGGGGGAG+GGG | + | chr2_4:56411162-56411181 | None:intergenic | 85.0% |
| !! | GCGGTGGCGGCGGTGGGGGA+GGG | + | chr2_4:56411163-56411182 | None:intergenic | 85.0% |
| !! | GTCGGCGGTGGCGGCGGTGG+GGG | + | chr2_4:56411167-56411186 | None:intergenic | 85.0% |
| !! | CGTCGGCGGTGGCGGCGGTG+GGG | + | chr2_4:56411168-56411187 | None:intergenic | 85.0% |
| !! | CCGTCGGCGGTGGCGGCGGT+GGG | + | chr2_4:56411169-56411188 | None:intergenic | 85.0% |
| ! | CCCACCGCCGCCACCGCCGA+CGG | - | chr2_4:56411166-56411185 | Msa0336860:CDS | 85.0% |
| !! | ACCGTCGGCGGTGGCGGCGG+TGG | + | chr2_4:56411170-56411189 | None:intergenic | 85.0% |
| ! | ACCGCCGCCACCGCCGACGG+TGG | - | chr2_4:56411169-56411188 | Msa0336860:CDS | 85.0% |
| !! | GCCACCGTCGGCGGTGGCGG+CGG | + | chr2_4:56411173-56411192 | None:intergenic | 85.0% |
| !! | GGCGGTGGCGGCGGTGGGGG+AGG | + | chr2_4:56411164-56411183 | None:intergenic | 90.0% |
| !! | GGCGGTGGCGGCGGTGGGGG+AGG | + | chr2_4:56411164-56411183 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 56410751 | 56412524 | 56410751 | ID=Msa0336860;Name=Msa0336860 |
| chr2_4 | mRNA | 56410751 | 56412524 | 56410751 | ID=Msa0336860-mRNA-1;Parent=Msa0336860;Name=Msa0336860-mRNA-1;_AED=0.42;_eAED=0.42;_QI=34|0|0.33|0.33|1|1|3|0|377 |
| chr2_4 | exon | 56410751 | 56411011 | 56410751 | ID=Msa0336860-mRNA-1:exon:17253;Parent=Msa0336860-mRNA-1 |
| chr2_4 | exon | 56411161 | 56411201 | 56411161 | ID=Msa0336860-mRNA-1:exon:17252;Parent=Msa0336860-mRNA-1 |
| chr2_4 | exon | 56411659 | 56412524 | 56411659 | ID=Msa0336860-mRNA-1:exon:17251;Parent=Msa0336860-mRNA-1 |
| chr2_4 | five_prime_UTR | 56412491 | 56412524 | 56412491 | ID=Msa0336860-mRNA-1:five_prime_utr;Parent=Msa0336860-mRNA-1 |
| chr2_4 | CDS | 56411659 | 56412490 | 56411659 | ID=Msa0336860-mRNA-1:cds;Parent=Msa0336860-mRNA-1 |
| chr2_4 | CDS | 56411161 | 56411201 | 56411161 | ID=Msa0336860-mRNA-1:cds;Parent=Msa0336860-mRNA-1 |
| chr2_4 | CDS | 56410751 | 56411011 | 56410751 | ID=Msa0336860-mRNA-1:cds;Parent=Msa0336860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
