AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261250 MtrunA17_Chr2g0323291 95.595 227 6 2 52 277 1 224 1.30e-158 440
Msa0261250 MtrunA17_Chr8g0361111 58.079 229 81 4 57 271 23 250 1.35e-75 231
Msa0261250 MtrunA17_Chr2g0318741 41.333 150 64 4 55 204 16 141 2.67e-31 114
Msa0261250 MtrunA17_Chr1g0194801 32.164 171 89 7 76 237 6 158 1.39e-20 85.9
Msa0261250 MtrunA17_Chr1g0192651 30.000 170 102 5 76 243 9 163 1.51e-19 83.6
Msa0261250 MtrunA17_Chr5g0427291 35.028 177 92 8 72 235 4 170 1.07e-18 81.6
Msa0261250 MtrunA17_Chr1g0176321 30.387 181 96 6 77 239 4 172 4.83e-17 77.0
Msa0261250 MtrunA17_Chr2g0294421 29.697 165 105 3 73 235 2 157 2.28e-16 74.7
Msa0261250 MtrunA17_Chr1g0176311 30.857 175 97 5 77 239 23 185 2.84e-16 75.1
Msa0261250 MtrunA17_Chr1g0195661 29.630 162 98 3 80 238 16 164 1.49e-15 72.8
Msa0261250 MtrunA17_Chr4g0032261 30.120 166 103 4 73 235 2 157 6.65e-15 70.9
Msa0261250 MtrunA17_Chr7g0240701 27.160 162 107 3 76 235 5 157 1.64e-13 67.0
Msa0261250 MtrunA17_Chr4g0008801 25.000 168 103 4 76 235 5 157 8.32e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261250 AT1G11360.2 59.259 243 77 7 44 276 12 242 2.49e-90 268
Msa0261250 AT1G11360.1 59.259 243 77 7 44 276 12 242 2.49e-90 268
Msa0261250 AT1G11360.4 59.259 243 77 7 44 276 12 242 2.49e-90 268
Msa0261250 AT1G11360.3 59.259 243 77 7 44 276 12 242 2.49e-90 268
Msa0261250 AT5G54430.2 67.836 171 49 3 73 242 45 210 5.03e-66 206
Msa0261250 AT5G54430.5 67.836 171 49 3 73 242 45 210 5.03e-66 206
Msa0261250 AT5G54430.1 67.836 171 49 3 73 242 45 210 5.26e-66 206
Msa0261250 AT5G54430.4 67.836 171 49 3 73 242 45 210 5.26e-66 206
Msa0261250 AT5G54430.3 67.836 171 49 3 73 242 45 210 9.40e-66 206
Msa0261250 AT5G54430.6 67.836 171 49 3 73 242 45 210 9.40e-66 206
Msa0261250 AT4G27320.2 64.912 171 60 0 72 242 41 211 9.97e-65 204
Msa0261250 AT4G27320.1 64.912 171 60 0 72 242 41 211 1.06e-64 203
Msa0261250 AT3G21210.1 46.766 201 64 7 58 255 2 162 5.75e-34 130
Msa0261250 AT3G58450.1 34.286 175 90 6 78 240 32 193 3.35e-19 84.0
Msa0261250 AT1G09740.2 34.270 178 100 6 72 242 4 171 5.27e-18 79.7
Msa0261250 AT1G09740.1 34.270 178 100 6 72 242 4 171 5.27e-18 79.7
Msa0261250 AT3G58450.2 33.143 175 85 6 78 240 32 186 7.42e-18 80.1
Msa0261250 AT3G03270.2 33.728 169 93 4 73 235 2 157 1.10e-17 78.6
Msa0261250 AT3G11930.1 27.411 197 117 7 56 239 13 196 1.82e-17 79.0
Msa0261250 AT3G11930.4 26.667 195 123 5 56 239 13 198 4.77e-17 78.2
Msa0261250 AT3G11930.2 28.283 198 115 8 56 239 13 197 6.34e-17 77.8
Msa0261250 AT3G17020.1 28.834 163 104 3 76 235 7 160 7.68e-17 76.6
Msa0261250 AT3G53990.1 29.697 165 99 5 76 235 5 157 2.42e-14 69.7
Msa0261250 AT3G62550.1 32.143 168 90 6 75 235 6 156 3.12e-14 69.3
Msa0261250 AT3G11930.3 25.792 221 117 8 56 239 13 223 1.20e-13 68.9
Msa0261250 AT2G47710.1 26.667 165 98 5 80 238 12 159 7.95e-12 62.8
Msa0261250 AT3G03270.1 31.944 144 82 3 73 210 2 135 1.99e-11 62.4
Msa0261250 AT1G68300.1 28.743 167 93 7 76 235 10 157 4.52e-11 60.5

Find 89 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATCTTTCTTTCTTTCT+TGG 0.165673 2_2:+59534417 None:intergenic
GTCTTGATGTTGTTGAATTT+TGG 0.195981 2_2:+59534439 None:intergenic
TGGATTGAGTGCTGTGATTA+TGG 0.202284 2_2:-59533877 Msa0261250:CDS
ACCGTCGGCGGTGGCGGCGG+TGG 0.208659 2_2:+59534073 None:intergenic
CGTCGGCGGTGGCGGCGGTG+GGG 0.235216 2_2:+59534075 None:intergenic
GTCGGCGGTGGCGGCGGTGG+GGG 0.286804 2_2:+59534076 None:intergenic
CCGTCGGCGGTGGCGGCGGT+GGG 0.293253 2_2:+59534074 None:intergenic
CGTTCTCTACGGCGCCGATT+GGG 0.323896 2_2:-59534111 Msa0261250:CDS
CCGTTCTCTACGGCGCCGAT+TGG 0.330764 2_2:-59534112 Msa0261250:CDS
TCATGTTCTTCCTCAATAAC+AGG 0.333897 2_2:+59533681 None:intergenic
TCGAGCCGGGTGATCCGGTT+CGG 0.366540 2_2:+59534277 None:intergenic
TTTGTCCTGTTGTTGTTGTA+AGG 0.379033 2_2:-59533773 Msa0261250:CDS
ATCGCCACCGTCGGCGGTGG+CGG 0.381717 2_2:+59534067 None:intergenic
GGATTGAGTGCTGTGATTAT+GGG 0.392819 2_2:-59533876 Msa0261250:CDS
GCCACCGTCGGCGGTGGCGG+CGG 0.401210 2_2:+59534070 None:intergenic
ATTCATGTTGGAGAAAATTA+CGG 0.409949 2_2:+59534319 None:intergenic
TATGAAGGAAAGATTGTGTT+TGG 0.411316 2_2:-59533913 Msa0261250:CDS
TTCACAATGTGAATCTTAAA+CGG 0.413061 2_2:+59533945 None:intergenic
GGCGGTGGCGCCGGAGTTGA+AGG 0.418319 2_2:-59533732 Msa0261250:CDS
GAGAATCGAGCCGGGTGATC+CGG 0.418386 2_2:+59534272 None:intergenic
CGAGCCGGGTGATCCGGTTC+GGG 0.434205 2_2:+59534278 None:intergenic
AGTATTAATCTGCGCAACTT+TGG 0.436069 2_2:-59534359 Msa0261250:CDS
ACCATCATTCCCTTCAACTC+CGG 0.437183 2_2:+59533722 None:intergenic
CCCACCGCCGCCACCGCCGA+CGG 0.446499 2_2:-59534074 Msa0261250:CDS
GGAGGGGACGGAACCCCAAT+CGG 0.448915 2_2:+59534097 None:intergenic
TGCGACTTTGCGGTGTGAAC+CGG 0.449024 2_2:+59534241 None:intergenic
ACCGCCGCCACCGCCGACGG+TGG 0.455733 2_2:-59534071 Msa0261250:CDS
GCGACGAAGAGAAGTTCTAA+TGG 0.460127 2_2:-59533837 Msa0261250:CDS
TGTTGTTGTTGTAAGGTATC+CGG 0.464214 2_2:-59533766 Msa0261250:CDS
CACCAATGGTTGTGCAAGAT+CGG 0.464706 2_2:+59533980 None:intergenic
GAGAGTGATGGCGGTGGCGC+CGG 0.471955 2_2:-59533741 Msa0261250:CDS
GGATACCTTACAACAACAAC+AGG 0.473220 2_2:+59533768 None:intergenic
AGAAGTTCTAATGGGAAGCT+TGG 0.473262 2_2:-59533828 Msa0261250:CDS
ATCACCGGTTCGGCCCGAAC+CGG 0.473685 2_2:-59534291 Msa0261250:CDS
TGATCCGGTTCGGGCCGAAC+CGG 0.474957 2_2:+59534287 None:intergenic
GGCATCGCCACCGTCGGCGG+TGG 0.483223 2_2:+59534064 None:intergenic
GTAACGGATCAAAGAGTTTG+AGG 0.483366 2_2:+59534396 None:intergenic
TGAACTTCATCCTGTTATTG+AGG 0.483983 2_2:-59533691 Msa0261250:CDS
CAACGGCGATTGCGACTTTG+CGG 0.486543 2_2:+59534231 None:intergenic
ATTATGGGAAGCCGTGGATT+CGG 0.487024 2_2:-59533861 Msa0261250:CDS
TGTGAAAGATCATGATATGA+AGG 0.493312 2_2:-59533928 Msa0261250:CDS
AGGAGGATGACGGTGTCGCC+TGG 0.496895 2_2:+59534152 None:intergenic
CGACGAAGAGAAGTTCTAAT+GGG 0.501552 2_2:-59533836 Msa0261250:CDS
CGATCTTGCACAACCATTGG+TGG 0.502670 2_2:-59533979 Msa0261250:CDS
AAAGCGCCTACGCCGTCCGA+TGG 0.507961 2_2:-59534196 Msa0261250:CDS
TCGGGCCGAACCGGTGATTG+TGG 0.519250 2_2:+59534296 None:intergenic
GCTCGATTCTCTCTCCCATC+CGG 0.521090 2_2:-59534260 Msa0261250:CDS
AACCGATCTTGCACAACCAT+TGG 0.523574 2_2:-59533982 Msa0261250:CDS
TGAATCCACAATCACCGGTT+CGG 0.526182 2_2:-59534301 Msa0261250:CDS
GGAGTTTCTGATTCCACCAA+TGG 0.528495 2_2:+59533966 None:intergenic
GCGCCGTAGAGAACGGAAGT+TGG 0.529716 2_2:+59534119 None:intergenic
AAGTTGGACGGACGTGGAGG+AGG 0.532912 2_2:+59534135 None:intergenic
GATTGTGTTTGGAAGTTGAA+CGG 0.542960 2_2:-59533902 Msa0261250:CDS
CTCGGAGGCATCGCCACCGT+CGG 0.543219 2_2:+59534058 None:intergenic
TCGGCCCGAACCGGATCACC+CGG 0.544498 2_2:-59534282 Msa0261250:CDS
GTTCTCTACGGCGCCGATTG+GGG 0.546679 2_2:-59534110 Msa0261250:CDS
CCACCGCCATCACTCTCCTC+CGG 0.553044 2_2:+59533747 None:intergenic
CGTCCAACTTCCGTTCTCTA+CGG 0.556201 2_2:-59534122 Msa0261250:CDS
GAACGGAAGTTGGACGGACG+TGG 0.556761 2_2:+59534129 None:intergenic
AAGCGCCTACGCCGTCCGAT+GGG 0.559124 2_2:-59534195 Msa0261250:CDS
CTTGGAGTTTGATTCAGTAA+CGG 0.559749 2_2:+59534380 None:intergenic
AAGTTGCGCAGATTAATACT+TGG 0.563471 2_2:+59534362 None:intergenic
CCAATCGGCGCCGTAGAGAA+CGG 0.564627 2_2:+59534112 None:intergenic
CAACATGAATCCACAATCAC+CGG 0.570327 2_2:-59534306 Msa0261250:CDS
GATGGGAGAGAGAATCGAGC+CGG 0.579454 2_2:+59534263 None:intergenic
ATGGGAGAGAGAATCGAGCC+GGG 0.583700 2_2:+59534264 None:intergenic
CTTTGCGGTGTGAACCGGAT+GGG 0.583999 2_2:+59534246 None:intergenic
TCTTCGTCGCACCGAATCCA+CGG 0.588772 2_2:+59533850 None:intergenic
AACTGCCCATCGGACGGCGT+AGG 0.589727 2_2:+59534190 None:intergenic
CGTAGAGAACGGAAGTTGGA+CGG 0.593295 2_2:+59534123 None:intergenic
GGAGGCATCGCCACCGTCGG+CGG 0.602626 2_2:+59534061 None:intergenic
CGGTGATTGTGGATTCATGT+TGG 0.604905 2_2:+59534307 None:intergenic
TGTTTGGAAGTTGAACGGCT+TGG 0.605669 2_2:-59533897 Msa0261250:CDS
GGATGACGGTGTCGCCTGGT+CGG 0.607279 2_2:+59534156 None:intergenic
TATTGAGGAAGAACATGAAG+AGG 0.612634 2_2:-59533676 Msa0261250:CDS
CCGGAGGAGAGTGATGGCGG+TGG 0.619622 2_2:-59533747 Msa0261250:CDS
ACTTTGCGGTGTGAACCGGA+TGG 0.620134 2_2:+59534245 None:intergenic
GCTTTCGTCGCTGAGATCAA+CGG 0.620909 2_2:+59534214 None:intergenic
AGGTATCCGGAGGAGAGTGA+TGG 0.623434 2_2:-59533753 Msa0261250:CDS
GTTCAAAATTATCTCCGACC+AGG 0.624222 2_2:-59534170 Msa0261250:CDS
GCCGGAGTTGAAGGGAATGA+TGG 0.624545 2_2:-59533723 Msa0261250:CDS
CGACGGTGGCGATGCCTCCG+AGG 0.636822 2_2:-59534057 Msa0261250:CDS
GCGGTGGCGCCGGAGTTGAA+GGG 0.640757 2_2:-59533731 Msa0261250:CDS
TATCCGGAGGAGAGTGATGG+CGG 0.657096 2_2:-59533750 Msa0261250:CDS
TGTTGTTGTAAGGTATCCGG+AGG 0.667970 2_2:-59533763 Msa0261250:CDS
CGGAAGTTGGACGGACGTGG+AGG 0.669422 2_2:+59534132 None:intergenic
ACGGACGTGGAGGAGGATGA+CGG 0.677052 2_2:+59534142 None:intergenic
GCTGTGATTATGGGAAGCCG+TGG 0.685112 2_2:-59533867 Msa0261250:CDS
GATGCTGATGATGAACACAA+AGG 0.760715 2_2:-59533645 Msa0261250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGAATTTTGGTATTCTTT+CGG + chr2_2:59533640-59533659 None:intergenic 25.0%
! ATTCATGTTGGAGAAAATTA+CGG + chr2_2:59533771-59533790 None:intergenic 25.0%
! TTCACAATGTGAATCTTAAA+CGG + chr2_2:59534145-59534164 None:intergenic 25.0%
!!! GTTGAATTTTGGTATTCTTT+CGG + chr2_2:59533640-59533659 None:intergenic 25.0%
! ATTCATGTTGGAGAAAATTA+CGG + chr2_2:59533771-59533790 None:intergenic 25.0%
! TTCACAATGTGAATCTTAAA+CGG + chr2_2:59534145-59534164 None:intergenic 25.0%
! GTCTTGATGTTGTTGAATTT+TGG + chr2_2:59533651-59533670 None:intergenic 30.0%
GGAAATCTTTCTTTCTTTCT+TGG + chr2_2:59533673-59533692 None:intergenic 30.0%
!!! TGGAGAAAATTACGGTTTTT+TGG + chr2_2:59533763-59533782 None:intergenic 30.0%
TGTGAAAGATCATGATATGA+AGG - chr2_2:59534159-59534178 Msa0261250:CDS 30.0%
TATGAAGGAAAGATTGTGTT+TGG - chr2_2:59534174-59534193 Msa0261250:CDS 30.0%
! GTCTTGATGTTGTTGAATTT+TGG + chr2_2:59533651-59533670 None:intergenic 30.0%
GGAAATCTTTCTTTCTTTCT+TGG + chr2_2:59533673-59533692 None:intergenic 30.0%
!!! TGGAGAAAATTACGGTTTTT+TGG + chr2_2:59533763-59533782 None:intergenic 30.0%
TGTGAAAGATCATGATATGA+AGG - chr2_2:59534159-59534178 Msa0261250:CDS 30.0%
TATGAAGGAAAGATTGTGTT+TGG - chr2_2:59534174-59534193 Msa0261250:CDS 30.0%
CTTGGAGTTTGATTCAGTAA+CGG + chr2_2:59533710-59533729 None:intergenic 35.0%
AAGTTGCGCAGATTAATACT+TGG + chr2_2:59533728-59533747 None:intergenic 35.0%
AGTATTAATCTGCGCAACTT+TGG - chr2_2:59533728-59533747 Msa0261250:CDS 35.0%
! GATAATTTTGAACTGCCCAT+CGG + chr2_2:59533910-59533929 None:intergenic 35.0%
!!! CATTTTTTGACGTGATTCCT+CGG + chr2_2:59534050-59534069 None:intergenic 35.0%
GATTGTGTTTGGAAGTTGAA+CGG - chr2_2:59534185-59534204 Msa0261250:CDS 35.0%
! TTTGTCCTGTTGTTGTTGTA+AGG - chr2_2:59534314-59534333 Msa0261250:CDS 35.0%
! TGTTGTTGTTGTAAGGTATC+CGG - chr2_2:59534321-59534340 Msa0261250:CDS 35.0%
TGAACTTCATCCTGTTATTG+AGG - chr2_2:59534396-59534415 Msa0261250:CDS 35.0%
TCATGTTCTTCCTCAATAAC+AGG + chr2_2:59534409-59534428 None:intergenic 35.0%
TATTGAGGAAGAACATGAAG+AGG - chr2_2:59534411-59534430 Msa0261250:CDS 35.0%
CTTGGAGTTTGATTCAGTAA+CGG + chr2_2:59533710-59533729 None:intergenic 35.0%
AAGTTGCGCAGATTAATACT+TGG + chr2_2:59533728-59533747 None:intergenic 35.0%
AGTATTAATCTGCGCAACTT+TGG - chr2_2:59533728-59533747 Msa0261250:CDS 35.0%
! GATAATTTTGAACTGCCCAT+CGG + chr2_2:59533910-59533929 None:intergenic 35.0%
!!! CATTTTTTGACGTGATTCCT+CGG + chr2_2:59534050-59534069 None:intergenic 35.0%
GATTGTGTTTGGAAGTTGAA+CGG - chr2_2:59534185-59534204 Msa0261250:CDS 35.0%
! TTTGTCCTGTTGTTGTTGTA+AGG - chr2_2:59534314-59534333 Msa0261250:CDS 35.0%
! TGTTGTTGTTGTAAGGTATC+CGG - chr2_2:59534321-59534340 Msa0261250:CDS 35.0%
TGAACTTCATCCTGTTATTG+AGG - chr2_2:59534396-59534415 Msa0261250:CDS 35.0%
TCATGTTCTTCCTCAATAAC+AGG + chr2_2:59534409-59534428 None:intergenic 35.0%
TATTGAGGAAGAACATGAAG+AGG - chr2_2:59534411-59534430 Msa0261250:CDS 35.0%
!! GTAACGGATCAAAGAGTTTG+AGG + chr2_2:59533694-59533713 None:intergenic 40.0%
CAACATGAATCCACAATCAC+CGG - chr2_2:59533781-59533800 Msa0261250:CDS 40.0%
GTTCAAAATTATCTCCGACC+AGG - chr2_2:59533917-59533936 Msa0261250:CDS 40.0%
CGAGGAATCACGTCAAAAAA+TGG - chr2_2:59534048-59534067 Msa0261250:CDS 40.0%
!!! AAGATCGGTTGCTTTTGTTG+AGG + chr2_2:59534095-59534114 None:intergenic 40.0%
! TGGATTGAGTGCTGTGATTA+TGG - chr2_2:59534210-59534229 Msa0261250:CDS 40.0%
! GGATTGAGTGCTGTGATTAT+GGG - chr2_2:59534211-59534230 Msa0261250:CDS 40.0%
! CGACGAAGAGAAGTTCTAAT+GGG - chr2_2:59534251-59534270 Msa0261250:CDS 40.0%
! AGAAGTTCTAATGGGAAGCT+TGG - chr2_2:59534259-59534278 Msa0261250:CDS 40.0%
GGATACCTTACAACAACAAC+AGG + chr2_2:59534322-59534341 None:intergenic 40.0%
! GATGCTGATGATGAACACAA+AGG - chr2_2:59534442-59534461 Msa0261250:CDS 40.0%
!! GTAACGGATCAAAGAGTTTG+AGG + chr2_2:59533694-59533713 None:intergenic 40.0%
CAACATGAATCCACAATCAC+CGG - chr2_2:59533781-59533800 Msa0261250:CDS 40.0%
GTTCAAAATTATCTCCGACC+AGG - chr2_2:59533917-59533936 Msa0261250:CDS 40.0%
CGAGGAATCACGTCAAAAAA+TGG - chr2_2:59534048-59534067 Msa0261250:CDS 40.0%
!!! AAGATCGGTTGCTTTTGTTG+AGG + chr2_2:59534095-59534114 None:intergenic 40.0%
! TGGATTGAGTGCTGTGATTA+TGG - chr2_2:59534210-59534229 Msa0261250:CDS 40.0%
! GGATTGAGTGCTGTGATTAT+GGG - chr2_2:59534211-59534230 Msa0261250:CDS 40.0%
! CGACGAAGAGAAGTTCTAAT+GGG - chr2_2:59534251-59534270 Msa0261250:CDS 40.0%
! AGAAGTTCTAATGGGAAGCT+TGG - chr2_2:59534259-59534278 Msa0261250:CDS 40.0%
GGATACCTTACAACAACAAC+AGG + chr2_2:59534322-59534341 None:intergenic 40.0%
! GATGCTGATGATGAACACAA+AGG - chr2_2:59534442-59534461 Msa0261250:CDS 40.0%
CGGTGATTGTGGATTCATGT+TGG + chr2_2:59533783-59533802 None:intergenic 45.0%
! TGAATCCACAATCACCGGTT+CGG - chr2_2:59533786-59533805 Msa0261250:CDS 45.0%
! ATTTTGAACTGCCCATCGGA+CGG + chr2_2:59533906-59533925 None:intergenic 45.0%
! TTTTTGACGTGATTCCTCGG+AGG + chr2_2:59534047-59534066 None:intergenic 45.0%
AACCGATCTTGCACAACCAT+TGG - chr2_2:59534105-59534124 Msa0261250:CDS 45.0%
CACCAATGGTTGTGCAAGAT+CGG + chr2_2:59534110-59534129 None:intergenic 45.0%
GGAGTTTCTGATTCCACCAA+TGG + chr2_2:59534124-59534143 None:intergenic 45.0%
TGTTTGGAAGTTGAACGGCT+TGG - chr2_2:59534190-59534209 Msa0261250:CDS 45.0%
ATTATGGGAAGCCGTGGATT+CGG - chr2_2:59534226-59534245 Msa0261250:CDS 45.0%
! GCGACGAAGAGAAGTTCTAA+TGG - chr2_2:59534250-59534269 Msa0261250:CDS 45.0%
! TGTTGTTGTAAGGTATCCGG+AGG - chr2_2:59534324-59534343 Msa0261250:CDS 45.0%
ACCATCATTCCCTTCAACTC+CGG + chr2_2:59534368-59534387 None:intergenic 45.0%
CGGTGATTGTGGATTCATGT+TGG + chr2_2:59533783-59533802 None:intergenic 45.0%
! TGAATCCACAATCACCGGTT+CGG - chr2_2:59533786-59533805 Msa0261250:CDS 45.0%
! ATTTTGAACTGCCCATCGGA+CGG + chr2_2:59533906-59533925 None:intergenic 45.0%
! TTTTTGACGTGATTCCTCGG+AGG + chr2_2:59534047-59534066 None:intergenic 45.0%
AACCGATCTTGCACAACCAT+TGG - chr2_2:59534105-59534124 Msa0261250:CDS 45.0%
CACCAATGGTTGTGCAAGAT+CGG + chr2_2:59534110-59534129 None:intergenic 45.0%
GGAGTTTCTGATTCCACCAA+TGG + chr2_2:59534124-59534143 None:intergenic 45.0%
TGTTTGGAAGTTGAACGGCT+TGG - chr2_2:59534190-59534209 Msa0261250:CDS 45.0%
ATTATGGGAAGCCGTGGATT+CGG - chr2_2:59534226-59534245 Msa0261250:CDS 45.0%
! GCGACGAAGAGAAGTTCTAA+TGG - chr2_2:59534250-59534269 Msa0261250:CDS 45.0%
! TGTTGTTGTAAGGTATCCGG+AGG - chr2_2:59534324-59534343 Msa0261250:CDS 45.0%
ACCATCATTCCCTTCAACTC+CGG + chr2_2:59534368-59534387 None:intergenic 45.0%
GCTTTCGTCGCTGAGATCAA+CGG + chr2_2:59533876-59533895 None:intergenic 50.0%
CGTAGAGAACGGAAGTTGGA+CGG + chr2_2:59533967-59533986 None:intergenic 50.0%
CGTCCAACTTCCGTTCTCTA+CGG - chr2_2:59533965-59533984 Msa0261250:CDS 50.0%
CGATCTTGCACAACCATTGG+TGG - chr2_2:59534108-59534127 Msa0261250:CDS 50.0%
GCTTTCGTCGCTGAGATCAA+CGG + chr2_2:59533876-59533895 None:intergenic 50.0%
CGTAGAGAACGGAAGTTGGA+CGG + chr2_2:59533967-59533986 None:intergenic 50.0%
CGTCCAACTTCCGTTCTCTA+CGG - chr2_2:59533965-59533984 Msa0261250:CDS 50.0%
CGATCTTGCACAACCATTGG+TGG - chr2_2:59534108-59534127 Msa0261250:CDS 50.0%
ATGGGAGAGAGAATCGAGCC+GGG + chr2_2:59533826-59533845 None:intergenic 55.0%
GATGGGAGAGAGAATCGAGC+CGG + chr2_2:59533827-59533846 None:intergenic 55.0%
GCTCGATTCTCTCTCCCATC+CGG - chr2_2:59533827-59533846 Msa0261250:CDS 55.0%
CTTTGCGGTGTGAACCGGAT+GGG + chr2_2:59533844-59533863 None:intergenic 55.0%
ACTTTGCGGTGTGAACCGGA+TGG + chr2_2:59533845-59533864 None:intergenic 55.0%
TGCGACTTTGCGGTGTGAAC+CGG + chr2_2:59533849-59533868 None:intergenic 55.0%
CAACGGCGATTGCGACTTTG+CGG + chr2_2:59533859-59533878 None:intergenic 55.0%
GCTGTGATTATGGGAAGCCG+TGG - chr2_2:59534220-59534239 Msa0261250:CDS 55.0%
TCTTCGTCGCACCGAATCCA+CGG + chr2_2:59534240-59534259 None:intergenic 55.0%
AGGTATCCGGAGGAGAGTGA+TGG - chr2_2:59534334-59534353 Msa0261250:CDS 55.0%
TATCCGGAGGAGAGTGATGG+CGG - chr2_2:59534337-59534356 Msa0261250:CDS 55.0%
GCCGGAGTTGAAGGGAATGA+TGG - chr2_2:59534364-59534383 Msa0261250:CDS 55.0%
ATGGGAGAGAGAATCGAGCC+GGG + chr2_2:59533826-59533845 None:intergenic 55.0%
GATGGGAGAGAGAATCGAGC+CGG + chr2_2:59533827-59533846 None:intergenic 55.0%
GCTCGATTCTCTCTCCCATC+CGG - chr2_2:59533827-59533846 Msa0261250:CDS 55.0%
CTTTGCGGTGTGAACCGGAT+GGG + chr2_2:59533844-59533863 None:intergenic 55.0%
ACTTTGCGGTGTGAACCGGA+TGG + chr2_2:59533845-59533864 None:intergenic 55.0%
TGCGACTTTGCGGTGTGAAC+CGG + chr2_2:59533849-59533868 None:intergenic 55.0%
CAACGGCGATTGCGACTTTG+CGG + chr2_2:59533859-59533878 None:intergenic 55.0%
GCTGTGATTATGGGAAGCCG+TGG - chr2_2:59534220-59534239 Msa0261250:CDS 55.0%
TCTTCGTCGCACCGAATCCA+CGG + chr2_2:59534240-59534259 None:intergenic 55.0%
AGGTATCCGGAGGAGAGTGA+TGG - chr2_2:59534334-59534353 Msa0261250:CDS 55.0%
TATCCGGAGGAGAGTGATGG+CGG - chr2_2:59534337-59534356 Msa0261250:CDS 55.0%
GCCGGAGTTGAAGGGAATGA+TGG - chr2_2:59534364-59534383 Msa0261250:CDS 55.0%
GAGAATCGAGCCGGGTGATC+CGG + chr2_2:59533818-59533837 None:intergenic 60.0%
ACGGACGTGGAGGAGGATGA+CGG + chr2_2:59533948-59533967 None:intergenic 60.0%
AAGTTGGACGGACGTGGAGG+AGG + chr2_2:59533955-59533974 None:intergenic 60.0%
GAACGGAAGTTGGACGGACG+TGG + chr2_2:59533961-59533980 None:intergenic 60.0%
GCGCCGTAGAGAACGGAAGT+TGG + chr2_2:59533971-59533990 None:intergenic 60.0%
CCAATCGGCGCCGTAGAGAA+CGG + chr2_2:59533978-59533997 None:intergenic 60.0%
!! CGTTCTCTACGGCGCCGATT+GGG - chr2_2:59533976-59533995 Msa0261250:CDS 60.0%
!! GTTCTCTACGGCGCCGATTG+GGG - chr2_2:59533977-59533996 Msa0261250:CDS 60.0%
GAGAATCGAGCCGGGTGATC+CGG + chr2_2:59533818-59533837 None:intergenic 60.0%
ACGGACGTGGAGGAGGATGA+CGG + chr2_2:59533948-59533967 None:intergenic 60.0%
AAGTTGGACGGACGTGGAGG+AGG + chr2_2:59533955-59533974 None:intergenic 60.0%
GAACGGAAGTTGGACGGACG+TGG + chr2_2:59533961-59533980 None:intergenic 60.0%
GCGCCGTAGAGAACGGAAGT+TGG + chr2_2:59533971-59533990 None:intergenic 60.0%
CCAATCGGCGCCGTAGAGAA+CGG + chr2_2:59533978-59533997 None:intergenic 60.0%
!! CGTTCTCTACGGCGCCGATT+GGG - chr2_2:59533976-59533995 Msa0261250:CDS 60.0%
!! GTTCTCTACGGCGCCGATTG+GGG - chr2_2:59533977-59533996 Msa0261250:CDS 60.0%
TCGGGCCGAACCGGTGATTG+TGG + chr2_2:59533794-59533813 None:intergenic 65.0%
!! ATCACCGGTTCGGCCCGAAC+CGG - chr2_2:59533796-59533815 Msa0261250:CDS 65.0%
!! TGATCCGGTTCGGGCCGAAC+CGG + chr2_2:59533803-59533822 None:intergenic 65.0%
TCGAGCCGGGTGATCCGGTT+CGG + chr2_2:59533813-59533832 None:intergenic 65.0%
! AAAGCGCCTACGCCGTCCGA+TGG - chr2_2:59533891-59533910 Msa0261250:CDS 65.0%
AAGCGCCTACGCCGTCCGAT+GGG - chr2_2:59533892-59533911 Msa0261250:CDS 65.0%
AACTGCCCATCGGACGGCGT+AGG + chr2_2:59533900-59533919 None:intergenic 65.0%
!! GGATGACGGTGTCGCCTGGT+CGG + chr2_2:59533934-59533953 None:intergenic 65.0%
!! AGGAGGATGACGGTGTCGCC+TGG + chr2_2:59533938-59533957 None:intergenic 65.0%
CGGAAGTTGGACGGACGTGG+AGG + chr2_2:59533958-59533977 None:intergenic 65.0%
!! CCGTTCTCTACGGCGCCGAT+TGG - chr2_2:59533975-59533994 Msa0261250:CDS 65.0%
GGAGGGGACGGAACCCCAAT+CGG + chr2_2:59533993-59534012 None:intergenic 65.0%
CCACCGCCATCACTCTCCTC+CGG + chr2_2:59534343-59534362 None:intergenic 65.0%
TCGGGCCGAACCGGTGATTG+TGG + chr2_2:59533794-59533813 None:intergenic 65.0%
!! ATCACCGGTTCGGCCCGAAC+CGG - chr2_2:59533796-59533815 Msa0261250:CDS 65.0%
!! TGATCCGGTTCGGGCCGAAC+CGG + chr2_2:59533803-59533822 None:intergenic 65.0%
TCGAGCCGGGTGATCCGGTT+CGG + chr2_2:59533813-59533832 None:intergenic 65.0%
! AAAGCGCCTACGCCGTCCGA+TGG - chr2_2:59533891-59533910 Msa0261250:CDS 65.0%
AAGCGCCTACGCCGTCCGAT+GGG - chr2_2:59533892-59533911 Msa0261250:CDS 65.0%
AACTGCCCATCGGACGGCGT+AGG + chr2_2:59533900-59533919 None:intergenic 65.0%
!! GGATGACGGTGTCGCCTGGT+CGG + chr2_2:59533934-59533953 None:intergenic 65.0%
!! AGGAGGATGACGGTGTCGCC+TGG + chr2_2:59533938-59533957 None:intergenic 65.0%
CGGAAGTTGGACGGACGTGG+AGG + chr2_2:59533958-59533977 None:intergenic 65.0%
!! CCGTTCTCTACGGCGCCGAT+TGG - chr2_2:59533975-59533994 Msa0261250:CDS 65.0%
GGAGGGGACGGAACCCCAAT+CGG + chr2_2:59533993-59534012 None:intergenic 65.0%
CCACCGCCATCACTCTCCTC+CGG + chr2_2:59534343-59534362 None:intergenic 65.0%
TCGGCCCGAACCGGATCACC+CGG - chr2_2:59533805-59533824 Msa0261250:CDS 70.0%
CGAGCCGGGTGATCCGGTTC+GGG + chr2_2:59533812-59533831 None:intergenic 70.0%
!! CTCGGAGGCATCGCCACCGT+CGG + chr2_2:59534032-59534051 None:intergenic 70.0%
!! CCGGAGGAGAGTGATGGCGG+TGG - chr2_2:59534340-59534359 Msa0261250:CDS 70.0%
!! GAGAGTGATGGCGGTGGCGC+CGG - chr2_2:59534346-59534365 Msa0261250:CDS 70.0%
! GCGGTGGCGCCGGAGTTGAA+GGG - chr2_2:59534356-59534375 Msa0261250:CDS 70.0%
TCGGCCCGAACCGGATCACC+CGG - chr2_2:59533805-59533824 Msa0261250:CDS 70.0%
CGAGCCGGGTGATCCGGTTC+GGG + chr2_2:59533812-59533831 None:intergenic 70.0%
!! CTCGGAGGCATCGCCACCGT+CGG + chr2_2:59534032-59534051 None:intergenic 70.0%
!! CCGGAGGAGAGTGATGGCGG+TGG - chr2_2:59534340-59534359 Msa0261250:CDS 70.0%
!! GAGAGTGATGGCGGTGGCGC+CGG - chr2_2:59534346-59534365 Msa0261250:CDS 70.0%
! GCGGTGGCGCCGGAGTTGAA+GGG - chr2_2:59534356-59534375 Msa0261250:CDS 70.0%
ATCGCCACCGTCGGCGGTGG+CGG + chr2_2:59534023-59534042 None:intergenic 75.0%
!! GGAGGCATCGCCACCGTCGG+CGG + chr2_2:59534029-59534048 None:intergenic 75.0%
CGACGGTGGCGATGCCTCCG+AGG - chr2_2:59534030-59534049 Msa0261250:CDS 75.0%
! GGCGGTGGCGCCGGAGTTGA+AGG - chr2_2:59534355-59534374 Msa0261250:CDS 75.0%
ATCGCCACCGTCGGCGGTGG+CGG + chr2_2:59534023-59534042 None:intergenic 75.0%
!! GGAGGCATCGCCACCGTCGG+CGG + chr2_2:59534029-59534048 None:intergenic 75.0%
CGACGGTGGCGATGCCTCCG+AGG - chr2_2:59534030-59534049 Msa0261250:CDS 75.0%
! GGCGGTGGCGCCGGAGTTGA+AGG - chr2_2:59534355-59534374 Msa0261250:CDS 75.0%
! GGCATCGCCACCGTCGGCGG+TGG + chr2_2:59534026-59534045 None:intergenic 80.0%
! GGCATCGCCACCGTCGGCGG+TGG + chr2_2:59534026-59534045 None:intergenic 80.0%
! GGCGGCGGTGGGGGAGGGGA+CGG + chr2_2:59534005-59534024 None:intergenic 85.0%
!! CGGTGGCGGCGGTGGGGGAG+GGG + chr2_2:59534009-59534028 None:intergenic 85.0%
!! GCGGTGGCGGCGGTGGGGGA+GGG + chr2_2:59534010-59534029 None:intergenic 85.0%
!! GTCGGCGGTGGCGGCGGTGG+GGG + chr2_2:59534014-59534033 None:intergenic 85.0%
!! CGTCGGCGGTGGCGGCGGTG+GGG + chr2_2:59534015-59534034 None:intergenic 85.0%
!! CCGTCGGCGGTGGCGGCGGT+GGG + chr2_2:59534016-59534035 None:intergenic 85.0%
! CCCACCGCCGCCACCGCCGA+CGG - chr2_2:59534013-59534032 Msa0261250:CDS 85.0%
!! ACCGTCGGCGGTGGCGGCGG+TGG + chr2_2:59534017-59534036 None:intergenic 85.0%
! ACCGCCGCCACCGCCGACGG+TGG - chr2_2:59534016-59534035 Msa0261250:CDS 85.0%
!! GCCACCGTCGGCGGTGGCGG+CGG + chr2_2:59534020-59534039 None:intergenic 85.0%
! GGCGGCGGTGGGGGAGGGGA+CGG + chr2_2:59534005-59534024 None:intergenic 85.0%
!! CGGTGGCGGCGGTGGGGGAG+GGG + chr2_2:59534009-59534028 None:intergenic 85.0%
!! GCGGTGGCGGCGGTGGGGGA+GGG + chr2_2:59534010-59534029 None:intergenic 85.0%
!! GTCGGCGGTGGCGGCGGTGG+GGG + chr2_2:59534014-59534033 None:intergenic 85.0%
!! CGTCGGCGGTGGCGGCGGTG+GGG + chr2_2:59534015-59534034 None:intergenic 85.0%
!! CCGTCGGCGGTGGCGGCGGT+GGG + chr2_2:59534016-59534035 None:intergenic 85.0%
! CCCACCGCCGCCACCGCCGA+CGG - chr2_2:59534013-59534032 Msa0261250:CDS 85.0%
!! ACCGTCGGCGGTGGCGGCGG+TGG + chr2_2:59534017-59534036 None:intergenic 85.0%
! ACCGCCGCCACCGCCGACGG+TGG - chr2_2:59534016-59534035 Msa0261250:CDS 85.0%
!! GCCACCGTCGGCGGTGGCGG+CGG + chr2_2:59534020-59534039 None:intergenic 85.0%
!! GGCGGTGGCGGCGGTGGGGG+AGG + chr2_2:59534011-59534030 None:intergenic 90.0%
!! GGCGGTGGCGGCGGTGGGGG+AGG + chr2_2:59534011-59534030 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59533632 59534477 59533632 ID=Msa0261250;Name=Msa0261250
chr2_2 mRNA 59533632 59534477 59533632 ID=Msa0261250-mRNA-1;Parent=Msa0261250;Name=Msa0261250-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|281
chr2_2 exon 59533632 59534477 59533632 ID=Msa0261250-mRNA-1:exon:18360;Parent=Msa0261250-mRNA-1
chr2_2 CDS 59533632 59534477 59533632 ID=Msa0261250-mRNA-1:cds;Parent=Msa0261250-mRNA-1
Gene Sequence

>Msa0261250

ATGAACCGAAAGAATACCAAAATTCAACAACATCAAGACCAAGAAAGAAAGAAAGATTTCCTCAAACTCTTTGATCCGTTACTGAATCAAACTCCAAGTATTAATCTGCGCAACTTTGGAATTTTAATCCAAAAAACCGTAATTTTCTCCAACATGAATCCACAATCACCGGTTCGGCCCGAACCGGATCACCCGGCTCGATTCTCTCTCCCATCCGGTTCACACCGCAAAGTCGCAATCGCCGTTGATCTCAGCGACGAAAGCGCCTACGCCGTCCGATGGGCAGTTCAAAATTATCTCCGACCAGGCGACACCGTCATCCTCCTCCACGTCCGTCCAACTTCCGTTCTCTACGGCGCCGATTGGGGTTCCGTCCCCTCCCCCACCGCCGCCACCGCCGACGGTGGCGATGCCTCCGAGGAATCACGTCAAAAAATGGAAGACGAATTCGACAATTTCACCTCAACAAAAGCAACCGATCTTGCACAACCATTGGTGGAATCAGAAACTCCGTTTAAGATTCACATTGTGAAAGATCATGATATGAAGGAAAGATTGTGTTTGGAAGTTGAACGGCTTGGATTGAGTGCTGTGATTATGGGAAGCCGTGGATTCGGTGCGACGAAGAGAAGTTCTAATGGGAAGCTTGGAAGTGTGAGTGATTATTGTGTTCGTCATTGTGTTTGTCCTGTTGTTGTTGTAAGGTATCCGGAGGAGAGTGATGGCGGTGGCGCCGGAGTTGAAGGGAATGATGGTGAAAAAGTTGAACTTCATCCTGTTATTGAGGAAGAACATGAAGAGGAGTATCATGATGCTGATGATGAACACAAAGGTTTAATCTTTTAA

Protein sequence

>Msa0261250

MNRKNTKIQQHQDQERKKDFLKLFDPLLNQTPSINLRNFGILIQKTVIFSNMNPQSPVRPEPDHPARFSLPSGSHRKVAIAVDLSDESAYAVRWAVQNYLRPGDTVILLHVRPTSVLYGADWGSVPSPTAATADGGDASEESRQKMEDEFDNFTSTKATDLAQPLVESETPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRSSNGKLGSVSDYCVRHCVCPVVVVRYPEESDGGGAGVEGNDGEKVELHPVIEEEHEEEYHDADDEHKGLIF*