AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449880 MtrunA17_Chr8g0372221 97.931 145 3 0 1 145 138 282 2.75e-98 284
Msa1449880 MtrunA17_Chr4g0062111 31.034 145 96 3 1 143 107 249 2.62e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449880 AT3G51140.1 64.583 144 49 1 1 144 136 277 2.45e-62 192
Msa1449880 AT3G51140.2 58.511 94 39 0 1 94 136 229 8.40e-33 115
Msa1449880 AT5G23040.2 32.432 148 92 4 1 144 114 257 1.21e-16 74.3
Msa1449880 AT5G23040.1 32.432 148 92 4 1 144 114 257 1.21e-16 74.3

Find 52 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGAGCATACATATTT+TGG 0.063893 tig0032732:-18556 Msa1449880:three_prime_UTR
AGGATAAGAGCTTTGCTTTA+TGG 0.229239 tig0032732:-19437 Msa1449880:CDS
ATGTCCAATGTACGTAAATT+TGG 0.262656 tig0032732:+18503 None:intergenic
GCCCTTGGTCCCTTGATTAT+AGG 0.265287 tig0032732:+18778 None:intergenic
GGATAAGAGCTTTGCTTTAT+GGG 0.286176 tig0032732:-19436 Msa1449880:intron
CTTATTCCAAGTCGTTTATA+CGG 0.293016 tig0032732:+19830 None:intergenic
GTCATACTCATGTCAAAATA+AGG 0.304751 tig0032732:+18478 None:intergenic
GTCAATAACTATGATGTTAT+AGG 0.321475 tig0032732:+18438 None:intergenic
GGATCGCTCACATTAATTCT+TGG 0.335746 tig0032732:+19851 None:intergenic
CGAGGAAGGGCCAACACTTC+AGG 0.348949 tig0032732:-19513 Msa1449880:CDS
GCCCTGCATATTTCTGAATC+AGG 0.356185 tig0032732:+19765 None:intergenic
GCTGTTGGGAACCTTCTTGA+TGG 0.390968 tig0032732:-18821 Msa1449880:CDS
CAATCAATCCCGATTCGTTC+AGG 0.407889 tig0032732:-19633 Msa1449880:CDS
CTCTGACAGCCTGAACGAAT+CGG 0.408522 tig0032732:+19624 None:intergenic
GATCGCTCACATTAATTCTT+GGG 0.413368 tig0032732:+19852 None:intergenic
ATAGGCAACAAGAATGGCTT+TGG 0.430861 tig0032732:+18456 None:intergenic
CAAGGGACCAAGGGCATTTG+AGG 0.437968 tig0032732:-18770 Msa1449880:CDS
CTTTAGCCTTCATATAAGAT+AGG 0.451503 tig0032732:+18702 None:intergenic
TCCTCCCATTCCTATAATCA+AGG 0.453208 tig0032732:-18788 Msa1449880:CDS
GCTTCCAAATTTACGTACAT+TGG 0.461390 tig0032732:-18507 Msa1449880:three_prime_UTR
TGGTCCCTTGATTATAGGAA+TGG 0.471280 tig0032732:+18783 None:intergenic
TCTGACAGCCTGAACGAATC+GGG 0.472429 tig0032732:+19625 None:intergenic
CTGAAGTGTTGGCCCTTCCT+CGG 0.475487 tig0032732:+19514 None:intergenic
CATCGACCTATCTTATATGA+AGG 0.484004 tig0032732:-18708 Msa1449880:exon
AGTGTTGGCCCTTCCTCGGT+TGG 0.487936 tig0032732:+19518 None:intergenic
TTCCTGATTCAGAAATATGC+AGG 0.491805 tig0032732:-19767 Msa1449880:five_prime_UTR
GGTCCCTTGATTATAGGAAT+GGG 0.504384 tig0032732:+18784 None:intergenic
TATATGATCGGCTGAAGAGC+AGG 0.515820 tig0032732:-19457 Msa1449880:CDS
GACTCAATTGAATCTACACT+TGG 0.523228 tig0032732:+19737 None:intergenic
TTTATAATGAATATAGTGGA+TGG 0.536659 tig0032732:+19587 None:intergenic
GATATTGCAACCTGAAGTGT+TGG 0.544335 tig0032732:+19503 None:intergenic
CAAATCCCGATTCAACAAAA+CGG 0.547555 tig0032732:+18600 None:intergenic
GTTCTCTTTCCAACCGAGGA+AGG 0.550887 tig0032732:-19527 Msa1449880:CDS
GATGTTATAGGCAACAAGAA+TGG 0.553132 tig0032732:+18450 None:intergenic
TCCTATAATCAAGGGACCAA+GGG 0.560682 tig0032732:-18779 Msa1449880:CDS
GTGATCACCTCAAATGCCCT+TGG 0.562552 tig0032732:+18763 None:intergenic
CAACGTATTTCGTATATGAT+CGG 0.574288 tig0032732:-19469 Msa1449880:CDS
AGCGATCCGTATAAACGACT+TGG 0.578474 tig0032732:-19836 Msa1449880:five_prime_UTR
TTCTCTTTCCAACCGAGGAA+GGG 0.587448 tig0032732:-19526 Msa1449880:CDS
CCTCCCATTCCTATAATCAA+GGG 0.591184 tig0032732:-18787 Msa1449880:CDS
CCCTTGATTATAGGAATGGG+AGG 0.596769 tig0032732:+18787 None:intergenic
TTCCTATAATCAAGGGACCA+AGG 0.602791 tig0032732:-18780 Msa1449880:CDS
AAGAAGAAATTCAAGCAGCT+AGG 0.603879 tig0032732:-19793 Msa1449880:five_prime_UTR
AAGTGTAGATTCAATTGAGT+CGG 0.607184 tig0032732:-19735 Msa1449880:five_prime_UTR
TAAACGACTTGGAATAAGCA+AGG 0.615337 tig0032732:-19825 Msa1449880:five_prime_UTR
AATTACTGACACCATCAAGA+AGG 0.623704 tig0032732:+18810 None:intergenic
TCTCAATCTGAATGCCGCGG+CGG 0.636482 tig0032732:-18672 Msa1449880:three_prime_UTR
GACCGTTCTCTTTCCAACCG+AGG 0.637405 tig0032732:-19531 Msa1449880:CDS
TCCTGATTCAGAAATATGCA+GGG 0.647834 tig0032732:-19766 Msa1449880:five_prime_UTR
TTCCTCGGTTGGAAAGAGAA+CGG 0.656823 tig0032732:+19529 None:intergenic
GTATCTCAATCTGAATGCCG+CGG 0.659897 tig0032732:-18675 Msa1449880:three_prime_UTR
TCTTCTGCTAAAATCCGCCG+CGG 0.754859 tig0032732:+18658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTATAATGAATATAG+TGG + tig0032732:18650-18669 None:intergenic 15.0%
!!! AAAAAAAATAGATTTTGAGT+TGG - tig0032732:18954-18973 Msa1449880:intron 15.0%
!!! TCTATTTTTTTCTAAACATA+AGG + tig0032732:19092-19111 None:intergenic 15.0%
!!! GTTTAGAAAAAAATAGATTT+TGG - tig0032732:19095-19114 Msa1449880:intron 15.0%
!! TTAAAAAAATCCAAAACAAA+TGG - tig0032732:19252-19271 Msa1449880:intron 15.0%
!! TAAAAAAATCCAAAACAAAT+GGG - tig0032732:19253-19272 Msa1449880:intron 15.0%
!!! TGATAACATATGTTTTATTA+TGG - tig0032732:19495-19514 Msa1449880:CDS 15.0%
!!! GATAACATATGTTTTATTAT+GGG - tig0032732:19496-19515 Msa1449880:CDS 15.0%
!!! AGTTTTTATAATGAATATAG+TGG + tig0032732:18650-18669 None:intergenic 15.0%
!!! AAAAAAAATAGATTTTGAGT+TGG - tig0032732:18954-18973 Msa1449880:intron 15.0%
!!! TCTATTTTTTTCTAAACATA+AGG + tig0032732:19092-19111 None:intergenic 15.0%
!!! GTTTAGAAAAAAATAGATTT+TGG - tig0032732:19095-19114 Msa1449880:intron 15.0%
!! TTAAAAAAATCCAAAACAAA+TGG - tig0032732:19252-19271 Msa1449880:intron 15.0%
!! TAAAAAAATCCAAAACAAAT+GGG - tig0032732:19253-19272 Msa1449880:intron 15.0%
!!! TGATAACATATGTTTTATTA+TGG - tig0032732:19495-19514 Msa1449880:CDS 15.0%
!!! GATAACATATGTTTTATTAT+GGG - tig0032732:19496-19515 Msa1449880:CDS 15.0%
!!! TTTATAATGAATATAGTGGA+TGG + tig0032732:18646-18665 None:intergenic 20.0%
!! ATTCATTATAAAAACTTCAC+TGG - tig0032732:18654-18673 Msa1449880:three_prime_UTR 20.0%
!!! TTTATAATGAATATAGTGGA+TGG + tig0032732:18646-18665 None:intergenic 20.0%
!! ATTCATTATAAAAACTTCAC+TGG - tig0032732:18654-18673 Msa1449880:three_prime_UTR 20.0%
!! TTTTGCTGATGTCAATTTTT+GGG + tig0032732:18564-18583 None:intergenic 25.0%
!! TTTTTGCTGATGTCAATTTT+TGG + tig0032732:18565-18584 None:intergenic 25.0%
! TTGACATCAGCAAAAAAATT+AGG - tig0032732:18569-18588 Msa1449880:three_prime_UTR 25.0%
! TGACATCAGCAAAAAAATTA+GGG - tig0032732:18570-18589 Msa1449880:three_prime_UTR 25.0%
!!! TCATTTTGATAGCATAACTT+AGG - tig0032732:18912-18931 Msa1449880:intron 25.0%
!!! CATTTTGATAGCATAACTTA+GGG - tig0032732:18913-18932 Msa1449880:intron 25.0%
!! TGAAATAGCTTTTCATTTTG+AGG - tig0032732:19128-19147 Msa1449880:intron 25.0%
!!! ATATCATTTTGATGCCTTTA+TGG - tig0032732:19309-19328 Msa1449880:intron 25.0%
!! TTGAATGAGCATACATATTT+TGG - tig0032732:19674-19693 Msa1449880:CDS 25.0%
!! TGAATGAGCATACATATTTT+GGG - tig0032732:19675-19694 Msa1449880:CDS 25.0%
!!! TACATATTTTGGGATTTTAG+AGG - tig0032732:19685-19704 Msa1449880:CDS 25.0%
! GTCAATAACTATGATGTTAT+AGG + tig0032732:19795-19814 None:intergenic 25.0%
!! TTTTGCTGATGTCAATTTTT+GGG + tig0032732:18564-18583 None:intergenic 25.0%
!! TTTTTGCTGATGTCAATTTT+TGG + tig0032732:18565-18584 None:intergenic 25.0%
! TTGACATCAGCAAAAAAATT+AGG - tig0032732:18569-18588 Msa1449880:three_prime_UTR 25.0%
! TGACATCAGCAAAAAAATTA+GGG - tig0032732:18570-18589 Msa1449880:three_prime_UTR 25.0%
!!! TCATTTTGATAGCATAACTT+AGG - tig0032732:18912-18931 Msa1449880:intron 25.0%
!!! CATTTTGATAGCATAACTTA+GGG - tig0032732:18913-18932 Msa1449880:intron 25.0%
!! TGAAATAGCTTTTCATTTTG+AGG - tig0032732:19128-19147 Msa1449880:intron 25.0%
!!! ATATCATTTTGATGCCTTTA+TGG - tig0032732:19309-19328 Msa1449880:intron 25.0%
!! TTGAATGAGCATACATATTT+TGG - tig0032732:19674-19693 Msa1449880:CDS 25.0%
!! TGAATGAGCATACATATTTT+GGG - tig0032732:19675-19694 Msa1449880:CDS 25.0%
!!! TACATATTTTGGGATTTTAG+AGG - tig0032732:19685-19704 Msa1449880:CDS 25.0%
! GTCAATAACTATGATGTTAT+AGG + tig0032732:19795-19814 None:intergenic 25.0%
CTTATTCCAAGTCGTTTATA+CGG + tig0032732:18403-18422 None:intergenic 30.0%
AAGTGTAGATTCAATTGAGT+CGG - tig0032732:18495-18514 Msa1449880:three_prime_UTR 30.0%
CAACGTATTTCGTATATGAT+CGG - tig0032732:18761-18780 Msa1449880:CDS 30.0%
!! AAATGAAAAGTGCTCAACAA+TGG + tig0032732:18898-18917 None:intergenic 30.0%
ATGTCATACAATGAGAACAA+GGG + tig0032732:19279-19298 None:intergenic 30.0%
AATGTCATACAATGAGAACA+AGG + tig0032732:19280-19299 None:intergenic 30.0%
! CTTTAGCCTTCATATAAGAT+AGG + tig0032732:19531-19550 None:intergenic 30.0%
ATGTCCAATGTACGTAAATT+TGG + tig0032732:19730-19749 None:intergenic 30.0%
GTCATACTCATGTCAAAATA+AGG + tig0032732:19755-19774 None:intergenic 30.0%
CTTATTCCAAGTCGTTTATA+CGG + tig0032732:18403-18422 None:intergenic 30.0%
AAGTGTAGATTCAATTGAGT+CGG - tig0032732:18495-18514 Msa1449880:three_prime_UTR 30.0%
CAACGTATTTCGTATATGAT+CGG - tig0032732:18761-18780 Msa1449880:CDS 30.0%
!! AAATGAAAAGTGCTCAACAA+TGG + tig0032732:18898-18917 None:intergenic 30.0%
ATGTCATACAATGAGAACAA+GGG + tig0032732:19279-19298 None:intergenic 30.0%
AATGTCATACAATGAGAACA+AGG + tig0032732:19280-19299 None:intergenic 30.0%
! CTTTAGCCTTCATATAAGAT+AGG + tig0032732:19531-19550 None:intergenic 30.0%
ATGTCCAATGTACGTAAATT+TGG + tig0032732:19730-19749 None:intergenic 30.0%
GTCATACTCATGTCAAAATA+AGG + tig0032732:19755-19774 None:intergenic 30.0%
GATCGCTCACATTAATTCTT+GGG + tig0032732:18381-18400 None:intergenic 35.0%
! TAAACGACTTGGAATAAGCA+AGG - tig0032732:18405-18424 Msa1449880:three_prime_UTR 35.0%
AAGAAGAAATTCAAGCAGCT+AGG - tig0032732:18437-18456 Msa1449880:three_prime_UTR 35.0%
TTCCTGATTCAGAAATATGC+AGG - tig0032732:18463-18482 Msa1449880:three_prime_UTR 35.0%
TCCTGATTCAGAAATATGCA+GGG - tig0032732:18464-18483 Msa1449880:three_prime_UTR 35.0%
GACTCAATTGAATCTACACT+TGG + tig0032732:18496-18515 None:intergenic 35.0%
! TCACTGGCATTTTTGTTACT+TGG - tig0032732:18670-18689 Msa1449880:three_prime_UTR 35.0%
AGGATAAGAGCTTTGCTTTA+TGG - tig0032732:18793-18812 Msa1449880:CDS 35.0%
GGATAAGAGCTTTGCTTTAT+GGG - tig0032732:18794-18813 Msa1449880:CDS 35.0%
AGCTGAGAGAAAAACCATAA+AGG + tig0032732:19326-19345 None:intergenic 35.0%
GCTTATTTATATCCGTGCTT+TGG - tig0032732:19357-19376 Msa1449880:intron 35.0%
!! TTGGAGCATTTATCTTTTCG+TGG - tig0032732:19387-19406 Msa1449880:intron 35.0%
! ATTTATCTTTTCGTGGCTGT+TGG - tig0032732:19394-19413 Msa1449880:intron 35.0%
! TTTATCTTTTCGTGGCTGTT+GGG - tig0032732:19395-19414 Msa1449880:intron 35.0%
AATTACTGACACCATCAAGA+AGG + tig0032732:19423-19442 None:intergenic 35.0%
CATCGACCTATCTTATATGA+AGG - tig0032732:19522-19541 Msa1449880:CDS 35.0%
!!! GTTATGCCGTTTTGTTGAAT+CGG - tig0032732:19624-19643 Msa1449880:CDS 35.0%
!!! TTATGCCGTTTTGTTGAATC+GGG - tig0032732:19625-19644 Msa1449880:CDS 35.0%
CAAATCCCGATTCAACAAAA+CGG + tig0032732:19633-19652 None:intergenic 35.0%
!! TGGGATTTTAGAGGCATATA+TGG - tig0032732:19694-19713 Msa1449880:CDS 35.0%
GCTTCCAAATTTACGTACAT+TGG - tig0032732:19723-19742 Msa1449880:five_prime_UTR 35.0%
GATGTTATAGGCAACAAGAA+TGG + tig0032732:19783-19802 None:intergenic 35.0%
GATCGCTCACATTAATTCTT+GGG + tig0032732:18381-18400 None:intergenic 35.0%
! TAAACGACTTGGAATAAGCA+AGG - tig0032732:18405-18424 Msa1449880:three_prime_UTR 35.0%
AAGAAGAAATTCAAGCAGCT+AGG - tig0032732:18437-18456 Msa1449880:three_prime_UTR 35.0%
TTCCTGATTCAGAAATATGC+AGG - tig0032732:18463-18482 Msa1449880:three_prime_UTR 35.0%
TCCTGATTCAGAAATATGCA+GGG - tig0032732:18464-18483 Msa1449880:three_prime_UTR 35.0%
GACTCAATTGAATCTACACT+TGG + tig0032732:18496-18515 None:intergenic 35.0%
! TCACTGGCATTTTTGTTACT+TGG - tig0032732:18670-18689 Msa1449880:three_prime_UTR 35.0%
AGGATAAGAGCTTTGCTTTA+TGG - tig0032732:18793-18812 Msa1449880:CDS 35.0%
GGATAAGAGCTTTGCTTTAT+GGG - tig0032732:18794-18813 Msa1449880:CDS 35.0%
AGCTGAGAGAAAAACCATAA+AGG + tig0032732:19326-19345 None:intergenic 35.0%
GCTTATTTATATCCGTGCTT+TGG - tig0032732:19357-19376 Msa1449880:intron 35.0%
!! TTGGAGCATTTATCTTTTCG+TGG - tig0032732:19387-19406 Msa1449880:intron 35.0%
! ATTTATCTTTTCGTGGCTGT+TGG - tig0032732:19394-19413 Msa1449880:intron 35.0%
! TTTATCTTTTCGTGGCTGTT+GGG - tig0032732:19395-19414 Msa1449880:intron 35.0%
AATTACTGACACCATCAAGA+AGG + tig0032732:19423-19442 None:intergenic 35.0%
CATCGACCTATCTTATATGA+AGG - tig0032732:19522-19541 Msa1449880:CDS 35.0%
!!! GTTATGCCGTTTTGTTGAAT+CGG - tig0032732:19624-19643 Msa1449880:CDS 35.0%
!!! TTATGCCGTTTTGTTGAATC+GGG - tig0032732:19625-19644 Msa1449880:CDS 35.0%
CAAATCCCGATTCAACAAAA+CGG + tig0032732:19633-19652 None:intergenic 35.0%
!! TGGGATTTTAGAGGCATATA+TGG - tig0032732:19694-19713 Msa1449880:CDS 35.0%
GCTTCCAAATTTACGTACAT+TGG - tig0032732:19723-19742 Msa1449880:five_prime_UTR 35.0%
GATGTTATAGGCAACAAGAA+TGG + tig0032732:19783-19802 None:intergenic 35.0%
GGATCGCTCACATTAATTCT+TGG + tig0032732:18382-18401 None:intergenic 40.0%
GATATTGCAACCTGAAGTGT+TGG + tig0032732:18730-18749 None:intergenic 40.0%
GTCTAGCAGACAATATCATC+AGG + tig0032732:18876-18895 None:intergenic 40.0%
! GGTTTTTCTCTCAGCTTCTT+AGG - tig0032732:19330-19349 Msa1449880:intron 40.0%
TCCTCCCATTCCTATAATCA+AGG - tig0032732:19442-19461 Msa1449880:CDS 40.0%
CCTCCCATTCCTATAATCAA+GGG - tig0032732:19443-19462 Msa1449880:CDS 40.0%
GGTCCCTTGATTATAGGAAT+GGG + tig0032732:19449-19468 None:intergenic 40.0%
TGGTCCCTTGATTATAGGAA+TGG + tig0032732:19450-19469 None:intergenic 40.0%
TTCCTATAATCAAGGGACCA+AGG - tig0032732:19450-19469 Msa1449880:CDS 40.0%
TCCTATAATCAAGGGACCAA+GGG - tig0032732:19451-19470 Msa1449880:CDS 40.0%
ATAGGCAACAAGAATGGCTT+TGG + tig0032732:19777-19796 None:intergenic 40.0%
GGATCGCTCACATTAATTCT+TGG + tig0032732:18382-18401 None:intergenic 40.0%
GATATTGCAACCTGAAGTGT+TGG + tig0032732:18730-18749 None:intergenic 40.0%
GTCTAGCAGACAATATCATC+AGG + tig0032732:18876-18895 None:intergenic 40.0%
! GGTTTTTCTCTCAGCTTCTT+AGG - tig0032732:19330-19349 Msa1449880:intron 40.0%
TCCTCCCATTCCTATAATCA+AGG - tig0032732:19442-19461 Msa1449880:CDS 40.0%
CCTCCCATTCCTATAATCAA+GGG - tig0032732:19443-19462 Msa1449880:CDS 40.0%
GGTCCCTTGATTATAGGAAT+GGG + tig0032732:19449-19468 None:intergenic 40.0%
TGGTCCCTTGATTATAGGAA+TGG + tig0032732:19450-19469 None:intergenic 40.0%
TTCCTATAATCAAGGGACCA+AGG - tig0032732:19450-19469 Msa1449880:CDS 40.0%
TCCTATAATCAAGGGACCAA+GGG - tig0032732:19451-19470 Msa1449880:CDS 40.0%
ATAGGCAACAAGAATGGCTT+TGG + tig0032732:19777-19796 None:intergenic 40.0%
AGCGATCCGTATAAACGACT+TGG - tig0032732:18394-18413 Msa1449880:three_prime_UTR 45.0%
! GCCCTGCATATTTCTGAATC+AGG + tig0032732:18468-18487 None:intergenic 45.0%
! CAATCAATCCCGATTCGTTC+AGG - tig0032732:18597-18616 Msa1449880:three_prime_UTR 45.0%
TTCCTCGGTTGGAAAGAGAA+CGG + tig0032732:18704-18723 None:intergenic 45.0%
TTCTCTTTCCAACCGAGGAA+GGG - tig0032732:18704-18723 Msa1449880:exon 45.0%
TATATGATCGGCTGAAGAGC+AGG - tig0032732:18773-18792 Msa1449880:CDS 45.0%
! GAACAAGGGCCCATTTGTTT+TGG + tig0032732:19265-19284 None:intergenic 45.0%
! TTATATCCGTGCTTTGGTGC+AGG - tig0032732:19363-19382 Msa1449880:intron 45.0%
! TATATCCGTGCTTTGGTGCA+GGG - tig0032732:19364-19383 Msa1449880:intron 45.0%
CCCTTGATTATAGGAATGGG+AGG + tig0032732:19446-19465 None:intergenic 45.0%
GTATCTCAATCTGAATGCCG+CGG - tig0032732:19555-19574 Msa1449880:CDS 45.0%
AGCGATCCGTATAAACGACT+TGG - tig0032732:18394-18413 Msa1449880:three_prime_UTR 45.0%
! GCCCTGCATATTTCTGAATC+AGG + tig0032732:18468-18487 None:intergenic 45.0%
! CAATCAATCCCGATTCGTTC+AGG - tig0032732:18597-18616 Msa1449880:three_prime_UTR 45.0%
TTCCTCGGTTGGAAAGAGAA+CGG + tig0032732:18704-18723 None:intergenic 45.0%
TTCTCTTTCCAACCGAGGAA+GGG - tig0032732:18704-18723 Msa1449880:exon 45.0%
TATATGATCGGCTGAAGAGC+AGG - tig0032732:18773-18792 Msa1449880:CDS 45.0%
! GAACAAGGGCCCATTTGTTT+TGG + tig0032732:19265-19284 None:intergenic 45.0%
! TTATATCCGTGCTTTGGTGC+AGG - tig0032732:19363-19382 Msa1449880:intron 45.0%
! TATATCCGTGCTTTGGTGCA+GGG - tig0032732:19364-19383 Msa1449880:intron 45.0%
CCCTTGATTATAGGAATGGG+AGG + tig0032732:19446-19465 None:intergenic 45.0%
GTATCTCAATCTGAATGCCG+CGG - tig0032732:19555-19574 Msa1449880:CDS 45.0%
!!! AATGATTTTTTTTTTTTTAA+TGG - tig0032732:19156-19175 Msa1449880:intron 5.0%
!!! AATGATTTTTTTTTTTTTAA+TGG - tig0032732:19156-19175 Msa1449880:intron 5.0%
TCTGACAGCCTGAACGAATC+GGG + tig0032732:18608-18627 None:intergenic 50.0%
CTCTGACAGCCTGAACGAAT+CGG + tig0032732:18609-18628 None:intergenic 50.0%
GTTCTCTTTCCAACCGAGGA+AGG - tig0032732:18703-18722 Msa1449880:exon 50.0%
GCTGTTGGGAACCTTCTTGA+TGG - tig0032732:19409-19428 Msa1449880:intron 50.0%
GCCCTTGGTCCCTTGATTAT+AGG + tig0032732:19455-19474 None:intergenic 50.0%
GTGATCACCTCAAATGCCCT+TGG + tig0032732:19470-19489 None:intergenic 50.0%
TCTTCTGCTAAAATCCGCCG+CGG + tig0032732:19575-19594 None:intergenic 50.0%
TCTGACAGCCTGAACGAATC+GGG + tig0032732:18608-18627 None:intergenic 50.0%
CTCTGACAGCCTGAACGAAT+CGG + tig0032732:18609-18628 None:intergenic 50.0%
GTTCTCTTTCCAACCGAGGA+AGG - tig0032732:18703-18722 Msa1449880:exon 50.0%
GCTGTTGGGAACCTTCTTGA+TGG - tig0032732:19409-19428 Msa1449880:intron 50.0%
GCCCTTGGTCCCTTGATTAT+AGG + tig0032732:19455-19474 None:intergenic 50.0%
GTGATCACCTCAAATGCCCT+TGG + tig0032732:19470-19489 None:intergenic 50.0%
TCTTCTGCTAAAATCCGCCG+CGG + tig0032732:19575-19594 None:intergenic 50.0%
CGATTCGTTCAGGCTGTCAG+AGG - tig0032732:18607-18626 Msa1449880:three_prime_UTR 55.0%
GACCGTTCTCTTTCCAACCG+AGG - tig0032732:18699-18718 Msa1449880:exon 55.0%
!! CTGAAGTGTTGGCCCTTCCT+CGG + tig0032732:18719-18738 None:intergenic 55.0%
TCCAACCCTGCACCAAAGCA+CGG + tig0032732:19372-19391 None:intergenic 55.0%
!! CAAGGGACCAAGGGCATTTG+AGG - tig0032732:19460-19479 Msa1449880:CDS 55.0%
TCTCAATCTGAATGCCGCGG+CGG - tig0032732:19558-19577 Msa1449880:CDS 55.0%
CGATTCGTTCAGGCTGTCAG+AGG - tig0032732:18607-18626 Msa1449880:three_prime_UTR 55.0%
GACCGTTCTCTTTCCAACCG+AGG - tig0032732:18699-18718 Msa1449880:exon 55.0%
!! CTGAAGTGTTGGCCCTTCCT+CGG + tig0032732:18719-18738 None:intergenic 55.0%
TCCAACCCTGCACCAAAGCA+CGG + tig0032732:19372-19391 None:intergenic 55.0%
!! CAAGGGACCAAGGGCATTTG+AGG - tig0032732:19460-19479 Msa1449880:CDS 55.0%
TCTCAATCTGAATGCCGCGG+CGG - tig0032732:19558-19577 Msa1449880:CDS 55.0%
!! AGTGTTGGCCCTTCCTCGGT+TGG + tig0032732:18715-18734 None:intergenic 60.0%
CGAGGAAGGGCCAACACTTC+AGG - tig0032732:18717-18736 Msa1449880:CDS 60.0%
! TCCGTGCTTTGGTGCAGGGT+TGG - tig0032732:19368-19387 Msa1449880:intron 60.0%
!! AGTGTTGGCCCTTCCTCGGT+TGG + tig0032732:18715-18734 None:intergenic 60.0%
CGAGGAAGGGCCAACACTTC+AGG - tig0032732:18717-18736 Msa1449880:CDS 60.0%
! TCCGTGCTTTGGTGCAGGGT+TGG - tig0032732:19368-19387 Msa1449880:intron 60.0%
Chromosome Type Strat End Strand Name
tig0032732 gene 18371 19881 18371 ID=Msa1449880;Name=Msa1449880
tig0032732 mRNA 18371 19881 18371 ID=Msa1449880-mRNA-1;Parent=Msa1449880;Name=Msa1449880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=164|1|1|1|0|0.5|2|340|145
tig0032732 exon 18371 18867 18371 ID=Msa1449880-mRNA-1:exon:17180;Parent=Msa1449880-mRNA-1
tig0032732 exon 19437 19881 19437 ID=Msa1449880-mRNA-1:exon:17179;Parent=Msa1449880-mRNA-1
tig0032732 five_prime_UTR 19718 19881 19718 ID=Msa1449880-mRNA-1:five_prime_utr;Parent=Msa1449880-mRNA-1
tig0032732 CDS 19437 19717 19437 ID=Msa1449880-mRNA-1:cds;Parent=Msa1449880-mRNA-1
tig0032732 CDS 18711 18867 18711 ID=Msa1449880-mRNA-1:cds;Parent=Msa1449880-mRNA-1
tig0032732 three_prime_UTR 18371 18710 18371 ID=Msa1449880-mRNA-1:three_prime_utr;Parent=Msa1449880-mRNA-1
Gene Sequence

>Msa1449880

ATGAAGAAATTCTACGAGCGCAGAAACCCAAAAATTGACATCAGCAAAAAAATTAGGGCAGTCAATCAATCCCGATTCGTTCAGGCTGTCAGAGGCAGATTTCGCACTCCATCCACTATATTCATTATAAAAACTTCACTGGCATTTTTGTTACTTGGTGTTCTGACCGTTCTCTTTCCAACCGAGGAAGGGCCAACACTTCAGGTTGCAATATCTTTGTTCGTCACAACGTATTTCGTATATGATCGGCTGAAGAGCAGGATAAGAGCTTTGCTTTATGGGGTTGGAGCATTTATCTTTTCGTGGCTGTTGGGAACCTTCTTGATGGTGTCAGTAATTCCTCCCATTCCTATAATCAAGGGACCAAGGGCATTTGAGGTGATCACATCGTTGATAACATATGTTTTATTATGGGTTTCATCGACCTATCTTATATGA

Protein sequence

>Msa1449880

MKKFYERRNPKIDISKKIRAVNQSRFVQAVRGRFRTPSTIFIIKTSLAFLLLGVLTVLFPTEEGPTLQVAISLFVTTYFVYDRLKSRIRALLYGVGAFIFSWLLGTFLMVSVIPPIPIIKGPRAFEVITSLITYVLLWVSSTYLI*