AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154330 MtrunA17_Chr7g0245291 95.894 341 10 1 4 340 5 345 0.0 652
Msa1154330 MtrunA17_Chr7g0245261 76.807 332 65 4 14 334 1 331 1.54e-160 452
Msa1154330 MtrunA17_Chr7g0240091 34.483 232 126 8 109 320 223 448 1.01e-29 118
Msa1154330 MtrunA17_Chr4g0020011 32.328 232 136 6 107 321 151 378 2.50e-28 113
Msa1154330 MtrunA17_Chr2g0320711 33.190 232 129 8 109 320 210 435 8.25e-25 104
Msa1154330 MtrunA17_Chr3g0090071 30.000 230 142 7 107 321 163 388 2.49e-23 99.4
Msa1154330 MtrunA17_Chr4g0039291 30.131 229 143 4 107 320 162 388 3.44e-23 99.0
Msa1154330 MtrunA17_Chr3g0114241 27.755 245 152 7 106 328 483 724 6.42e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154330 AT3G08640.1 69.323 251 69 3 90 337 90 335 8.68e-124 359
Msa1154330 AT3G08630.1 71.311 244 65 3 98 337 95 337 3.91e-120 350
Msa1154330 AT2G37860.3 32.258 248 141 8 95 320 190 432 2.19e-28 114
Msa1154330 AT2G37860.4 32.258 248 141 8 95 320 190 432 2.19e-28 114
Msa1154330 AT5G22790.1 34.061 229 132 7 109 320 207 433 6.70e-27 110
Msa1154330 AT5G12470.1 30.085 236 146 5 103 322 153 385 2.84e-24 102
Msa1154330 AT3G56140.2 26.667 240 157 5 101 321 251 490 1.08e-17 84.3
Msa1154330 AT2G40400.2 27.917 240 152 7 101 320 461 699 1.81e-17 84.0
Msa1154330 AT2G40400.1 27.917 240 152 7 101 320 461 699 1.81e-17 84.0
Msa1154330 AT3G56140.1 26.778 239 156 5 101 320 470 708 2.21e-17 83.6
Msa1154330 AT3G56140.3 26.778 239 156 5 101 320 470 708 2.21e-17 83.6
Msa1154330 AT2G37860.2 28.125 160 97 4 95 238 190 347 3.32e-12 67.0
Msa1154330 AT2G37860.1 28.125 160 97 4 95 238 190 347 3.32e-12 67.0
Msa1154330 AT5G24690.1 29.508 183 102 5 111 279 240 409 1.00e-11 66.2
Msa1154330 AT2G40400.3 25.131 191 125 4 101 274 461 650 1.05e-11 66.2

Find 123 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCCAAATGAAAACATTT+TGG 0.167163 7_4:-41741980 Msa1154330:three_prime_UTR
GGGGATTTGGAATAAGTTTC+TGG 0.173819 7_4:-41742096 Msa1154330:three_prime_UTR
AATACATGGTTATACTAATT+TGG 0.177826 7_4:+41742023 None:intergenic
TATAACCATGTATTGGATTT+TGG 0.192405 7_4:-41742014 Msa1154330:three_prime_UTR
ATTTGGCACGTTAATGTTTC+AGG 0.197131 7_4:+41742040 None:intergenic
ACCTGGTGCCTATAGTTTAT+TGG 0.200815 7_4:-41742726 Msa1154330:CDS
ATGGCTACAAGGCCTAATTT+TGG 0.232354 7_4:-41742899 Msa1154330:CDS
TCTCACTTGGGCTGCTCATA+TGG 0.247103 7_4:-41742540 Msa1154330:CDS
AGTTCATTCAACCCAAAATT+AGG 0.260795 7_4:+41742887 None:intergenic
AGATTAAAACTTAGCTTTGC+TGG 0.279181 7_4:-41743133 Msa1154330:CDS
AATGTAGGTGGAGGCTTGTT+TGG 0.286617 7_4:+41742572 None:intergenic
AAGTCAGGTGATTCATCTTT+TGG 0.290733 7_4:-41743037 Msa1154330:CDS
ATCGCTTTGTTGGTGTTGTT+TGG 0.296042 7_4:+41742265 None:intergenic
TACCTTGCTGTTCTAGAATC+AGG 0.298976 7_4:-41743491 Msa1154330:intron
TTTGGAACTTTGGTGTATAA+AGG 0.311619 7_4:-41742698 Msa1154330:CDS
ATGTAGGTGGAGGCTTGTTT+GGG 0.323476 7_4:+41742573 None:intergenic
TGATCCACAATTTCCTTTCA+AGG 0.333082 7_4:-41742969 Msa1154330:CDS
GGTTCAAACATGTGACTCTT+AGG 0.337899 7_4:+41742746 None:intergenic
GGAGTTGGTCGGGGTGGTGG+TGG 0.340875 7_4:-41743094 Msa1154330:CDS
GTTGGTCGGGGTGGTGGTGG+TGG 0.340934 7_4:-41743091 Msa1154330:CDS
TCACAATTGGAGGTTGGATT+AGG 0.342575 7_4:-41742329 Msa1154330:CDS
GGGCTAGGTGCTGGTCTTGT+TGG 0.343612 7_4:-41742656 Msa1154330:CDS
ACTCAACCCCATTGAGAGTT+TGG 0.360058 7_4:+41742495 None:intergenic
ATTGGATAGGTTTGGAACTT+TGG 0.360848 7_4:-41742708 Msa1154330:CDS
GGAGAAAGTGCTTAATCCTT+TGG 0.363328 7_4:-41742465 Msa1154330:CDS
GGTCGGGGTGGTGGTGGTGG+CGG 0.365606 7_4:-41743088 Msa1154330:CDS
TACAGATCAAATGGAAACTA+TGG 0.365842 7_4:-41743281 Msa1154330:intron
TATAGTTTATTGGATAGGTT+TGG 0.365890 7_4:-41742716 Msa1154330:CDS
CTCACTTGGGCTGCTCATAT+GGG 0.366434 7_4:-41742539 Msa1154330:CDS
CTTGTTTGGGGACTCAAAGC+TGG 0.378323 7_4:+41742586 None:intergenic
GGTGGTGGTGGTGGCGGAGA+TGG 0.378741 7_4:-41743082 Msa1154330:CDS
GATTGATGCTATCGCTTTGT+TGG 0.380735 7_4:+41742255 None:intergenic
ACGTTAATGTTTCAGGTTGT+AGG 0.381616 7_4:+41742047 None:intergenic
AGACCTCAGTTGTGGTTCTC+AGG 0.383144 7_4:-41742436 Msa1154330:CDS
TCGCTTTGTTGGTGTTGTTT+GGG 0.384484 7_4:+41742266 None:intergenic
TTCTGAATGGTTGGAGATCA+AGG 0.385618 7_4:-41743000 Msa1154330:CDS
GCCATTGTTGGGCTAGGTGC+TGG 0.386014 7_4:-41742665 Msa1154330:CDS
AACCGAGGTTGCGGAAATAA+TGG 0.396569 7_4:+41743202 None:intergenic
TGGTGGCGGAGATGGAAGTT+CGG 0.402305 7_4:-41743074 Msa1154330:CDS
AGGTGTGCGAACAATGTTCT+TGG 0.403297 7_4:-41742416 Msa1154330:CDS
CATTGCTGAATGGTCTCACT+TGG 0.404560 7_4:-41742553 Msa1154330:CDS
TTGCTTTGTTACAGATCAAA+TGG 0.408267 7_4:-41743290 Msa1154330:intron
AAATTAGTATAACCATGTAT+TGG 0.409196 7_4:-41742021 Msa1154330:three_prime_UTR
TTGGGGCAAATGGGTTGGTT+TGG 0.412361 7_4:+41743156 None:intergenic
GTTGGAACAGCACTTTCAAA+TGG 0.416673 7_4:-41742638 Msa1154330:CDS
GGTGTGCGAACAATGTTCTT+GGG 0.418885 7_4:-41742415 Msa1154330:CDS
AAACCTATCCAATAAACTAT+AGG 0.423191 7_4:+41742718 None:intergenic
GTGCCTATAGTTTATTGGAT+AGG 0.425685 7_4:-41742721 Msa1154330:CDS
GTGATGTTGGCAAGGTTGAC+AGG 0.427456 7_4:-41742380 Msa1154330:CDS
CTCAGGTACCAAACTCTCAA+TGG 0.432392 7_4:-41742503 Msa1154330:CDS
TTGAAAGGTAAAAGAGGCTT+TGG 0.435948 7_4:-41742298 Msa1154330:exon
TCAGGTACCAAACTCTCAAT+GGG 0.440391 7_4:-41742502 Msa1154330:CDS
GGTGGCGGAGATGGAAGTTC+GGG 0.445041 7_4:-41743073 Msa1154330:CDS
TTCGTTTCTGCTTTATTGGT+AGG 0.445097 7_4:-41741940 Msa1154330:three_prime_UTR
TGAGAAGAAGCCATCACAAT+TGG 0.446713 7_4:-41742342 Msa1154330:CDS
TATGTAGCGTAGATTGAGAT+GGG 0.448626 7_4:-41742117 Msa1154330:three_prime_UTR
CTTAGCTTTGCTGGAGGAGA+TGG 0.452098 7_4:-41743124 Msa1154330:CDS
GGAAGTTCGGGACGTGATGA+TGG 0.460673 7_4:-41743061 Msa1154330:CDS
TATCTGTTGGCACCAACATT+GGG 0.462339 7_4:-41742809 Msa1154330:CDS
AATCTTTGGGGCAAATGGGT+TGG 0.471312 7_4:+41743151 None:intergenic
GCTGGAGGAGATGGTGGAGG+GGG 0.472702 7_4:-41743115 Msa1154330:CDS
ATTTGGAATAAGTTTCTGGC+TGG 0.476114 7_4:-41742092 Msa1154330:three_prime_UTR
TGGGTATGTTTCTGAATGGT+TGG 0.482195 7_4:-41743009 Msa1154330:CDS
TTTGCTGGAGGAGATGGTGG+AGG 0.482661 7_4:-41743118 Msa1154330:CDS
TTGGAACAGCACTTTCAAAT+GGG 0.488566 7_4:-41742637 Msa1154330:CDS
GGACGTGATGATGGAAAGTC+AGG 0.497516 7_4:-41743052 Msa1154330:CDS
TGCTGGAGGAGATGGTGGAG+GGG 0.499914 7_4:-41743116 Msa1154330:CDS
AACAGCACTTTCAAATGGGT+TGG 0.504935 7_4:-41742633 Msa1154330:CDS
CAATTATGAAACCGAGGTTG+CGG 0.505251 7_4:+41743193 None:intergenic
TTGCTGGAGGAGATGGTGGA+GGG 0.513636 7_4:-41743117 Msa1154330:CDS
GTGAGACCATTCAGCAATGT+AGG 0.514573 7_4:+41742557 None:intergenic
TCCTCGCTCAAAACCTTGAA+AGG 0.523234 7_4:+41742956 None:intergenic
GGTATTCAAGACCTCAGTTG+TGG 0.525273 7_4:-41742444 Msa1154330:CDS
GTATCTGTTGGCACCAACAT+TGG 0.527660 7_4:-41742810 Msa1154330:CDS
TGGGTTTCAGCAGCAACCTC+AGG 0.535353 7_4:-41742520 Msa1154330:CDS
GTATGTAGCGTAGATTGAGA+TGG 0.535679 7_4:-41742118 Msa1154330:three_prime_UTR
CCTCCACCTACATTGCTGAA+TGG 0.535956 7_4:-41742563 Msa1154330:CDS
GGAGGTTGGATTAGGTGAGA+AGG 0.538906 7_4:-41742321 Msa1154330:CDS
GAAGAAGCCATCACAATTGG+AGG 0.539032 7_4:-41742339 Msa1154330:CDS
TTGTTTGGGGACTCAAAGCT+GGG 0.541835 7_4:+41742587 None:intergenic
AAAACCTTGAAAGGAAATTG+TGG 0.543802 7_4:+41742965 None:intergenic
CGGAGGATTAAAACGCAGAA+GGG 0.545470 7_4:+41743258 None:intergenic
GGTCAGTACGAGGAAGAAGA+TGG 0.546188 7_4:-41742612 Msa1154330:CDS
TACCATTATTTCCGCAACCT+CGG 0.546217 7_4:-41743204 Msa1154330:CDS
AGCTTTGCTGGAGGAGATGG+TGG 0.549111 7_4:-41743121 Msa1154330:CDS
AAGCCATCACAATTGGAGGT+TGG 0.549494 7_4:-41742335 Msa1154330:CDS
AGTGCATGACTCTGACCAAA+CGG 0.550330 7_4:+41743238 None:intergenic
CGCGAGCTCTACAACAACCT+TGG 0.552559 7_4:+41742207 None:intergenic
AGAAGGTTGAAAGGTAAAAG+AGG 0.556993 7_4:-41742304 Msa1154330:exon
GTGTGCGAACAATGTTCTTG+GGG 0.557898 7_4:-41742414 Msa1154330:CDS
CTGAAAGAGTTTGTCAGAGT+AGG 0.565170 7_4:+41742151 None:intergenic
CAATGGGGTTGAGTTCATGT+TGG 0.565831 7_4:-41742486 Msa1154330:CDS
CATTGAGAGTTTGGTACCTG+AGG 0.567191 7_4:+41742504 None:intergenic
GATTAGGTGAGAAGGTTGAA+AGG 0.569180 7_4:-41742313 Msa1154330:CDS
CCATTCAGCAATGTAGGTGG+AGG 0.577563 7_4:+41742563 None:intergenic
GGACAAGATGCAAAGATAGC+CGG 0.583704 7_4:+41742767 None:intergenic
TTGACAGGGTCACAAAATGC+TGG 0.588376 7_4:-41742365 Msa1154330:CDS
TGTAGGTGGAGGCTTGTTTG+GGG 0.588831 7_4:+41742574 None:intergenic
ACGGAGGATTAAAACGCAGA+AGG 0.588940 7_4:+41743257 None:intergenic
TCCAATAAACTATAGGCACC+AGG 0.590594 7_4:+41742725 None:intergenic
CAAGGTTGTTGTAGAGCTCG+CGG 0.595690 7_4:-41742206 Msa1154330:three_prime_UTR
ACTGTAGCAGATCCCAATGT+TGG 0.599025 7_4:+41742797 None:intergenic
ATCTGCTACAGTCAAAGTGC+CGG 0.599258 7_4:-41742786 Msa1154330:CDS
TTAAAACTTAGCTTTGCTGG+AGG 0.601319 7_4:-41743130 Msa1154330:CDS
AAGAGTCACATGTTTGAACC+TGG 0.604135 7_4:-41742743 Msa1154330:CDS
TCTGAATGGTTGGAGATCAA+GGG 0.604644 7_4:-41742999 Msa1154330:CDS
GGAGACCAAAATCCAATACA+TGG 0.605524 7_4:+41742009 None:intergenic
AATCCAACCTCCAATTGTGA+TGG 0.614141 7_4:+41742332 None:intergenic
TGATGTTGGCAAGGTTGACA+GGG 0.615810 7_4:-41742379 Msa1154330:CDS
TGTAGCGTAGATTGAGATGG+GGG 0.617513 7_4:-41742115 Msa1154330:three_prime_UTR
ACCAGCACCTAGCCCAACAA+TGG 0.619549 7_4:+41742664 None:intergenic
ACTGAGGTCTTGAATACCAA+AGG 0.620635 7_4:+41742449 None:intergenic
ATTGCTGAATGGTCTCACTT+GGG 0.621562 7_4:-41742552 Msa1154330:CDS
CAAATGGGTTGGTCAGTACG+AGG 0.622120 7_4:-41742622 Msa1154330:CDS
AGACCATTCAGCAATGTAGG+TGG 0.628094 7_4:+41742560 None:intergenic
ATGTAGCGTAGATTGAGATG+GGG 0.668752 7_4:-41742116 Msa1154330:three_prime_UTR
TTTGACTATTGCATTGACCA+AGG 0.674682 7_4:-41742224 Msa1154330:three_prime_UTR
TGTGCGAACAATGTTCTTGG+GGG 0.675514 7_4:-41742413 Msa1154330:CDS
ATAGAACAATTATGAAACCG+AGG 0.678558 7_4:+41743187 None:intergenic
ACACCTGAGAACCACAACTG+AGG 0.691783 7_4:+41742433 None:intergenic
TACCTGATTCTAGAACAGCA+AGG 0.723306 7_4:+41743489 None:intergenic
GCATGACTCTGACCAAACGG+AGG 0.725265 7_4:+41743241 None:intergenic
CAGGTACCAAACTCTCAATG+GGG 0.736143 7_4:-41742501 Msa1154330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTCATAAATTTTATTTTT+GGG - chr7_4:41742095-41742114 Msa1154330:three_prime_UTR 15.0%
!!! AAATATCAAATTTTTGAAAC+AGG + chr7_4:41742200-41742219 None:intergenic 15.0%
!!! TCCTCATAAATTTTATTTTT+GGG - chr7_4:41742095-41742114 Msa1154330:three_prime_UTR 15.0%
!!! AAATATCAAATTTTTGAAAC+AGG + chr7_4:41742200-41742219 None:intergenic 15.0%
!!! TAACACACATTCAATTTTTT+AGG - chr7_4:41742058-41742077 Msa1154330:three_prime_UTR 20.0%
!!! AACACACATTCAATTTTTTA+GGG - chr7_4:41742059-41742078 Msa1154330:three_prime_UTR 20.0%
!!! CTCCTCATAAATTTTATTTT+TGG - chr7_4:41742094-41742113 Msa1154330:three_prime_UTR 20.0%
!! ACCCAAAAATAAAATTTATG+AGG + chr7_4:41742099-41742118 None:intergenic 20.0%
!!! TTTCTTTTACTTTCATTTTC+AGG - chr7_4:41742123-41742142 Msa1154330:three_prime_UTR 20.0%
!!! AGTTATGCTTTATTTATGAA+TGG - chr7_4:41742278-41742297 Msa1154330:three_prime_UTR 20.0%
!!! GTTATGCTTTATTTATGAAT+GGG - chr7_4:41742279-41742298 Msa1154330:three_prime_UTR 20.0%
!!! AAAGCTAAGTTTTAATCTTT+GGG + chr7_4:41742505-41742524 None:intergenic 20.0%
!! AATACATGGTTATACTAATT+TGG + chr7_4:41743620-41743639 None:intergenic 20.0%
!! AAATTAGTATAACCATGTAT+TGG - chr7_4:41743619-41743638 Msa1154330:intron 20.0%
!!! AGTTTTGGTTATATAAAATG+AGG - chr7_4:41743783-41743802 Msa1154330:intron 20.0%
!!! TAACACACATTCAATTTTTT+AGG - chr7_4:41742058-41742077 Msa1154330:three_prime_UTR 20.0%
!!! AACACACATTCAATTTTTTA+GGG - chr7_4:41742059-41742078 Msa1154330:three_prime_UTR 20.0%
!!! CTCCTCATAAATTTTATTTT+TGG - chr7_4:41742094-41742113 Msa1154330:three_prime_UTR 20.0%
!! ACCCAAAAATAAAATTTATG+AGG + chr7_4:41742099-41742118 None:intergenic 20.0%
!!! TTTCTTTTACTTTCATTTTC+AGG - chr7_4:41742123-41742142 Msa1154330:three_prime_UTR 20.0%
!!! AGTTATGCTTTATTTATGAA+TGG - chr7_4:41742278-41742297 Msa1154330:three_prime_UTR 20.0%
!!! GTTATGCTTTATTTATGAAT+GGG - chr7_4:41742279-41742298 Msa1154330:three_prime_UTR 20.0%
!!! AAAGCTAAGTTTTAATCTTT+GGG + chr7_4:41742505-41742524 None:intergenic 20.0%
!! AATACATGGTTATACTAATT+TGG + chr7_4:41743620-41743639 None:intergenic 20.0%
!! AAATTAGTATAACCATGTAT+TGG - chr7_4:41743619-41743638 Msa1154330:intron 20.0%
!!! TGAATAATGATTTGTTGATG+TGG - chr7_4:41742253-41742272 Msa1154330:three_prime_UTR 25.0%
!!! AAGCTAAGTTTTAATCTTTG+GGG + chr7_4:41742504-41742523 None:intergenic 25.0%
!!! CAAAGCTAAGTTTTAATCTT+TGG + chr7_4:41742506-41742525 None:intergenic 25.0%
!!! TGATTCATCTTTTGGAATTT+TGG - chr7_4:41742611-41742630 Msa1154330:CDS 25.0%
!!! GATTCATCTTTTGGAATTTT+GGG - chr7_4:41742612-41742631 Msa1154330:CDS 25.0%
! AAACCTATCCAATAAACTAT+AGG + chr7_4:41742925-41742944 None:intergenic 25.0%
! TATAGTTTATTGGATAGGTT+TGG - chr7_4:41742924-41742943 Msa1154330:CDS 25.0%
!! TATAACCATGTATTGGATTT+TGG - chr7_4:41743626-41743645 Msa1154330:intron 25.0%
!! TAGCCAAAATGTTTTCATTT+GGG + chr7_4:41743666-41743685 None:intergenic 25.0%
!! ATAGCCAAAATGTTTTCATT+TGG + chr7_4:41743667-41743686 None:intergenic 25.0%
!! GACACTTTTACAATGATAAT+TGG + chr7_4:41743747-41743766 None:intergenic 25.0%
!!! TGAATAATGATTTGTTGATG+TGG - chr7_4:41742253-41742272 Msa1154330:three_prime_UTR 25.0%
!!! AAGCTAAGTTTTAATCTTTG+GGG + chr7_4:41742504-41742523 None:intergenic 25.0%
!!! CAAAGCTAAGTTTTAATCTT+TGG + chr7_4:41742506-41742525 None:intergenic 25.0%
!!! TGATTCATCTTTTGGAATTT+TGG - chr7_4:41742611-41742630 Msa1154330:CDS 25.0%
!!! GATTCATCTTTTGGAATTTT+GGG - chr7_4:41742612-41742631 Msa1154330:CDS 25.0%
! AAACCTATCCAATAAACTAT+AGG + chr7_4:41742925-41742944 None:intergenic 25.0%
! TATAGTTTATTGGATAGGTT+TGG - chr7_4:41742924-41742943 Msa1154330:CDS 25.0%
!! TATAACCATGTATTGGATTT+TGG - chr7_4:41743626-41743645 Msa1154330:intron 25.0%
!! TAGCCAAAATGTTTTCATTT+GGG + chr7_4:41743666-41743685 None:intergenic 25.0%
!! ATAGCCAAAATGTTTTCATT+TGG + chr7_4:41743667-41743686 None:intergenic 25.0%
!! GACACTTTTACAATGATAAT+TGG + chr7_4:41743747-41743766 None:intergenic 25.0%
CAGGTGAAACAAAATATCTT+TGG - chr7_4:41741862-41741881 Msa1154330:three_prime_UTR 30.0%
TAGGGTATAGAAAATCAACT+TGG + chr7_4:41742028-41742047 None:intergenic 30.0%
TTATTTATGAATGGGTGATG+TGG - chr7_4:41742287-41742306 Msa1154330:three_prime_UTR 30.0%
TATTTATGAATGGGTGATGT+GGG - chr7_4:41742288-41742307 Msa1154330:three_prime_UTR 30.0%
! TTGCTTTGTTACAGATCAAA+TGG - chr7_4:41742350-41742369 Msa1154330:CDS 30.0%
TACAGATCAAATGGAAACTA+TGG - chr7_4:41742359-41742378 Msa1154330:CDS 30.0%
ATAGAACAATTATGAAACCG+AGG + chr7_4:41742456-41742475 None:intergenic 30.0%
!!! TTTTAATCTTTGGGGCAAAT+GGG + chr7_4:41742496-41742515 None:intergenic 30.0%
!! AGATTAAAACTTAGCTTTGC+TGG - chr7_4:41742507-41742526 Msa1154330:CDS 30.0%
!! ATTTTGGGTATGTTTCTGAA+TGG - chr7_4:41742627-41742646 Msa1154330:CDS 30.0%
AAAACCTTGAAAGGAAATTG+TGG + chr7_4:41742678-41742697 None:intergenic 30.0%
AGTTCATTCAACCCAAAATT+AGG + chr7_4:41742756-41742775 None:intergenic 30.0%
!! GTATTTTCAACTCTTGTTGT+TGG - chr7_4:41742783-41742802 Msa1154330:CDS 30.0%
! TTTTACACTCATGTATCTGT+TGG - chr7_4:41742818-41742837 Msa1154330:CDS 30.0%
! TTTGGAACTTTGGTGTATAA+AGG - chr7_4:41742942-41742961 Msa1154330:CDS 30.0%
!!! GAACTATTTTTGCCATTGTT+GGG - chr7_4:41742964-41742983 Msa1154330:CDS 30.0%
! CAAAATGTTTTCATTTGGGA+AGG + chr7_4:41743662-41743681 None:intergenic 30.0%
! CTTCCCAAATGAAAACATTT+TGG - chr7_4:41743660-41743679 Msa1154330:intron 30.0%
! GTTTTTCGTTTCTGCTTTAT+TGG - chr7_4:41743696-41743715 Msa1154330:intron 30.0%
! AAGTGTCACAAATCTTTTTG+CGG - chr7_4:41743760-41743779 Msa1154330:intron 30.0%
CAGGTGAAACAAAATATCTT+TGG - chr7_4:41741862-41741881 Msa1154330:three_prime_UTR 30.0%
TAGGGTATAGAAAATCAACT+TGG + chr7_4:41742028-41742047 None:intergenic 30.0%
TTATTTATGAATGGGTGATG+TGG - chr7_4:41742287-41742306 Msa1154330:three_prime_UTR 30.0%
TATTTATGAATGGGTGATGT+GGG - chr7_4:41742288-41742307 Msa1154330:three_prime_UTR 30.0%
! TTGCTTTGTTACAGATCAAA+TGG - chr7_4:41742350-41742369 Msa1154330:CDS 30.0%
TACAGATCAAATGGAAACTA+TGG - chr7_4:41742359-41742378 Msa1154330:CDS 30.0%
ATAGAACAATTATGAAACCG+AGG + chr7_4:41742456-41742475 None:intergenic 30.0%
!!! TTTTAATCTTTGGGGCAAAT+GGG + chr7_4:41742496-41742515 None:intergenic 30.0%
!! AGATTAAAACTTAGCTTTGC+TGG - chr7_4:41742507-41742526 Msa1154330:CDS 30.0%
!! ATTTTGGGTATGTTTCTGAA+TGG - chr7_4:41742627-41742646 Msa1154330:CDS 30.0%
AAAACCTTGAAAGGAAATTG+TGG + chr7_4:41742678-41742697 None:intergenic 30.0%
AGTTCATTCAACCCAAAATT+AGG + chr7_4:41742756-41742775 None:intergenic 30.0%
!! GTATTTTCAACTCTTGTTGT+TGG - chr7_4:41742783-41742802 Msa1154330:CDS 30.0%
! TTTTACACTCATGTATCTGT+TGG - chr7_4:41742818-41742837 Msa1154330:CDS 30.0%
! TTTGGAACTTTGGTGTATAA+AGG - chr7_4:41742942-41742961 Msa1154330:CDS 30.0%
!!! GAACTATTTTTGCCATTGTT+GGG - chr7_4:41742964-41742983 Msa1154330:CDS 30.0%
! CAAAATGTTTTCATTTGGGA+AGG + chr7_4:41743662-41743681 None:intergenic 30.0%
! CTTCCCAAATGAAAACATTT+TGG - chr7_4:41743660-41743679 Msa1154330:intron 30.0%
! GTTTTTCGTTTCTGCTTTAT+TGG - chr7_4:41743696-41743715 Msa1154330:intron 30.0%
! AAGTGTCACAAATCTTTTTG+CGG - chr7_4:41743760-41743779 Msa1154330:intron 30.0%
AATATCTTTGGCTGCTACAT+TGG - chr7_4:41741874-41741893 Msa1154330:three_prime_UTR 35.0%
ATCTGATCCTCACATAACTA+TGG + chr7_4:41741932-41741951 None:intergenic 35.0%
!! TCAACTTGGTGTTCATCTAT+TGG + chr7_4:41742014-41742033 None:intergenic 35.0%
GTGTGTTATACAGTAGTGTA+GGG + chr7_4:41742046-41742065 None:intergenic 35.0%
TGTGTGTTATACAGTAGTGT+AGG + chr7_4:41742047-41742066 None:intergenic 35.0%
!!! GTTTTAATCTTTGGGGCAAA+TGG + chr7_4:41742497-41742516 None:intergenic 35.0%
!! TTAAAACTTAGCTTTGCTGG+AGG - chr7_4:41742510-41742529 Msa1154330:CDS 35.0%
! AAGTCAGGTGATTCATCTTT+TGG - chr7_4:41742603-41742622 Msa1154330:CDS 35.0%
TGATCCACAATTTCCTTTCA+AGG - chr7_4:41742671-41742690 Msa1154330:CDS 35.0%
GTGCCTATAGTTTATTGGAT+AGG - chr7_4:41742919-41742938 Msa1154330:CDS 35.0%
! ATTGGATAGGTTTGGAACTT+TGG - chr7_4:41742932-41742951 Msa1154330:CDS 35.0%
!!! GGAACTATTTTTGCCATTGT+TGG - chr7_4:41742963-41742982 Msa1154330:CDS 35.0%
TTGGAACAGCACTTTCAAAT+GGG - chr7_4:41743003-41743022 Msa1154330:CDS 35.0%
AGAAGGTTGAAAGGTAAAAG+AGG - chr7_4:41743336-41743355 Msa1154330:intron 35.0%
TTGAAAGGTAAAAGAGGCTT+TGG - chr7_4:41743342-41743361 Msa1154330:intron 35.0%
! TTTGACTATTGCATTGACCA+AGG - chr7_4:41743416-41743435 Msa1154330:intron 35.0%
TATGTAGCGTAGATTGAGAT+GGG - chr7_4:41743523-41743542 Msa1154330:intron 35.0%
!! ATTTGGAATAAGTTTCTGGC+TGG - chr7_4:41743548-41743567 Msa1154330:intron 35.0%
!! ACGTTAATGTTTCAGGTTGT+AGG + chr7_4:41743596-41743615 None:intergenic 35.0%
ATTTGGCACGTTAATGTTTC+AGG + chr7_4:41743603-41743622 None:intergenic 35.0%
! TTTTCATTTGGGAAGGTAGT+TGG + chr7_4:41743655-41743674 None:intergenic 35.0%
! TTCGTTTCTGCTTTATTGGT+AGG - chr7_4:41743700-41743719 Msa1154330:intron 35.0%
! CAAATCTTTTTGCGGAGTTT+TGG - chr7_4:41743768-41743787 Msa1154330:intron 35.0%
AATATCTTTGGCTGCTACAT+TGG - chr7_4:41741874-41741893 Msa1154330:three_prime_UTR 35.0%
ATCTGATCCTCACATAACTA+TGG + chr7_4:41741932-41741951 None:intergenic 35.0%
!! TCAACTTGGTGTTCATCTAT+TGG + chr7_4:41742014-41742033 None:intergenic 35.0%
GTGTGTTATACAGTAGTGTA+GGG + chr7_4:41742046-41742065 None:intergenic 35.0%
TGTGTGTTATACAGTAGTGT+AGG + chr7_4:41742047-41742066 None:intergenic 35.0%
!!! GTTTTAATCTTTGGGGCAAA+TGG + chr7_4:41742497-41742516 None:intergenic 35.0%
!! TTAAAACTTAGCTTTGCTGG+AGG - chr7_4:41742510-41742529 Msa1154330:CDS 35.0%
! AAGTCAGGTGATTCATCTTT+TGG - chr7_4:41742603-41742622 Msa1154330:CDS 35.0%
TGATCCACAATTTCCTTTCA+AGG - chr7_4:41742671-41742690 Msa1154330:CDS 35.0%
GTGCCTATAGTTTATTGGAT+AGG - chr7_4:41742919-41742938 Msa1154330:CDS 35.0%
! ATTGGATAGGTTTGGAACTT+TGG - chr7_4:41742932-41742951 Msa1154330:CDS 35.0%
!!! GGAACTATTTTTGCCATTGT+TGG - chr7_4:41742963-41742982 Msa1154330:CDS 35.0%
TTGGAACAGCACTTTCAAAT+GGG - chr7_4:41743003-41743022 Msa1154330:CDS 35.0%
AGAAGGTTGAAAGGTAAAAG+AGG - chr7_4:41743336-41743355 Msa1154330:intron 35.0%
TTGAAAGGTAAAAGAGGCTT+TGG - chr7_4:41743342-41743361 Msa1154330:intron 35.0%
! TTTGACTATTGCATTGACCA+AGG - chr7_4:41743416-41743435 Msa1154330:intron 35.0%
TATGTAGCGTAGATTGAGAT+GGG - chr7_4:41743523-41743542 Msa1154330:intron 35.0%
!! ATTTGGAATAAGTTTCTGGC+TGG - chr7_4:41743548-41743567 Msa1154330:intron 35.0%
!! ACGTTAATGTTTCAGGTTGT+AGG + chr7_4:41743596-41743615 None:intergenic 35.0%
ATTTGGCACGTTAATGTTTC+AGG + chr7_4:41743603-41743622 None:intergenic 35.0%
! TTTTCATTTGGGAAGGTAGT+TGG + chr7_4:41743655-41743674 None:intergenic 35.0%
! TTCGTTTCTGCTTTATTGGT+AGG - chr7_4:41743700-41743719 Msa1154330:intron 35.0%
! CAAATCTTTTTGCGGAGTTT+TGG - chr7_4:41743768-41743787 Msa1154330:intron 35.0%
GAAGGAGAATGAATCTGCTA+TGG - chr7_4:41741898-41741917 Msa1154330:three_prime_UTR 40.0%
GGATACACCATAGTTATGTG+AGG - chr7_4:41741922-41741941 Msa1154330:three_prime_UTR 40.0%
! CCACAAAAACTTCTAGCCTT+TGG + chr7_4:41741958-41741977 None:intergenic 40.0%
! CCAAAGGCTAGAAGTTTTTG+TGG - chr7_4:41741955-41741974 Msa1154330:three_prime_UTR 40.0%
GATGATGAGTGTGACAAACA+TGG + chr7_4:41741982-41742001 None:intergenic 40.0%
!! ACTTGGTGTTCATCTATTGG+CGG + chr7_4:41742011-41742030 None:intergenic 40.0%
!! TACCTTGCTGTTCTAGAATC+AGG - chr7_4:41742149-41742168 Msa1154330:three_prime_UTR 40.0%
!! TACCTGATTCTAGAACAGCA+AGG + chr7_4:41742154-41742173 None:intergenic 40.0%
ATGGGTGATGTGGGATTTAT+TGG - chr7_4:41742297-41742316 Msa1154330:exon 40.0%
TACCATTATTTCCGCAACCT+CGG - chr7_4:41742436-41742455 Msa1154330:CDS 40.0%
CAATTATGAAACCGAGGTTG+CGG + chr7_4:41742450-41742469 None:intergenic 40.0%
! TGGGTATGTTTCTGAATGGT+TGG - chr7_4:41742631-41742650 Msa1154330:CDS 40.0%
TTCTGAATGGTTGGAGATCA+AGG - chr7_4:41742640-41742659 Msa1154330:CDS 40.0%
TCTGAATGGTTGGAGATCAA+GGG - chr7_4:41742641-41742660 Msa1154330:CDS 40.0%
!!! TTCTGCTGTTTTAGGTGACA+TGG - chr7_4:41742722-41742741 Msa1154330:CDS 40.0%
!! TTTTAGGTGACATGGCTACA+AGG - chr7_4:41742730-41742749 Msa1154330:CDS 40.0%
! ATGGCTACAAGGCCTAATTT+TGG - chr7_4:41742741-41742760 Msa1154330:CDS 40.0%
! TGGCTACAAGGCCTAATTTT+GGG - chr7_4:41742742-41742761 Msa1154330:CDS 40.0%
TATCTGTTGGCACCAACATT+GGG - chr7_4:41742831-41742850 Msa1154330:CDS 40.0%
GGTTCAAACATGTGACTCTT+AGG + chr7_4:41742897-41742916 None:intergenic 40.0%
AAGAGTCACATGTTTGAACC+TGG - chr7_4:41742897-41742916 Msa1154330:CDS 40.0%
ACCTGGTGCCTATAGTTTAT+TGG - chr7_4:41742914-41742933 Msa1154330:CDS 40.0%
TCCAATAAACTATAGGCACC+AGG + chr7_4:41742918-41742937 None:intergenic 40.0%
! ATTTTTGCCATTGTTGGGCT+AGG - chr7_4:41742969-41742988 Msa1154330:CDS 40.0%
GTTGGAACAGCACTTTCAAA+TGG - chr7_4:41743002-41743021 Msa1154330:CDS 40.0%
AACAGCACTTTCAAATGGGT+TGG - chr7_4:41743007-41743026 Msa1154330:CDS 40.0%
ATTGCTGAATGGTCTCACTT+GGG - chr7_4:41743088-41743107 Msa1154330:CDS 40.0%
TCAGGTACCAAACTCTCAAT+GGG - chr7_4:41743138-41743157 Msa1154330:CDS 40.0%
!! GGAGAAAGTGCTTAATCCTT+TGG - chr7_4:41743175-41743194 Msa1154330:CDS 40.0%
ACTGAGGTCTTGAATACCAA+AGG + chr7_4:41743194-41743213 None:intergenic 40.0%
! GGGAATGACTTTTGTGATGT+TGG - chr7_4:41743247-41743266 Msa1154330:CDS 40.0%
! TGACTTTTGTGATGTTGGCA+AGG - chr7_4:41743252-41743271 Msa1154330:CDS 40.0%
TGAGAAGAAGCCATCACAAT+TGG - chr7_4:41743298-41743317 Msa1154330:intron 40.0%
AATCCAACCTCCAATTGTGA+TGG + chr7_4:41743311-41743330 None:intergenic 40.0%
TCACAATTGGAGGTTGGATT+AGG - chr7_4:41743311-41743330 Msa1154330:intron 40.0%
GATTAGGTGAGAAGGTTGAA+AGG - chr7_4:41743327-41743346 Msa1154330:intron 40.0%
!! TCGCTTTGTTGGTGTTGTTT+GGG + chr7_4:41743377-41743396 None:intergenic 40.0%
!! ATCGCTTTGTTGGTGTTGTT+TGG + chr7_4:41743378-41743397 None:intergenic 40.0%
GATTGATGCTATCGCTTTGT+TGG + chr7_4:41743388-41743407 None:intergenic 40.0%
CTGAAAGAGTTTGTCAGAGT+AGG + chr7_4:41743492-41743511 None:intergenic 40.0%
GTATGTAGCGTAGATTGAGA+TGG - chr7_4:41743522-41743541 Msa1154330:intron 40.0%
ATGTAGCGTAGATTGAGATG+GGG - chr7_4:41743524-41743543 Msa1154330:intron 40.0%
! GGGGATTTGGAATAAGTTTC+TGG - chr7_4:41743544-41743563 Msa1154330:intron 40.0%
GGAGACCAAAATCCAATACA+TGG + chr7_4:41743634-41743653 None:intergenic 40.0%
GAAGGAGAATGAATCTGCTA+TGG - chr7_4:41741898-41741917 Msa1154330:three_prime_UTR 40.0%
GGATACACCATAGTTATGTG+AGG - chr7_4:41741922-41741941 Msa1154330:three_prime_UTR 40.0%
! CCACAAAAACTTCTAGCCTT+TGG + chr7_4:41741958-41741977 None:intergenic 40.0%
! CCAAAGGCTAGAAGTTTTTG+TGG - chr7_4:41741955-41741974 Msa1154330:three_prime_UTR 40.0%
GATGATGAGTGTGACAAACA+TGG + chr7_4:41741982-41742001 None:intergenic 40.0%
!! ACTTGGTGTTCATCTATTGG+CGG + chr7_4:41742011-41742030 None:intergenic 40.0%
!! TACCTTGCTGTTCTAGAATC+AGG - chr7_4:41742149-41742168 Msa1154330:three_prime_UTR 40.0%
!! TACCTGATTCTAGAACAGCA+AGG + chr7_4:41742154-41742173 None:intergenic 40.0%
ATGGGTGATGTGGGATTTAT+TGG - chr7_4:41742297-41742316 Msa1154330:exon 40.0%
TACCATTATTTCCGCAACCT+CGG - chr7_4:41742436-41742455 Msa1154330:CDS 40.0%
CAATTATGAAACCGAGGTTG+CGG + chr7_4:41742450-41742469 None:intergenic 40.0%
! TGGGTATGTTTCTGAATGGT+TGG - chr7_4:41742631-41742650 Msa1154330:CDS 40.0%
TTCTGAATGGTTGGAGATCA+AGG - chr7_4:41742640-41742659 Msa1154330:CDS 40.0%
TCTGAATGGTTGGAGATCAA+GGG - chr7_4:41742641-41742660 Msa1154330:CDS 40.0%
!!! TTCTGCTGTTTTAGGTGACA+TGG - chr7_4:41742722-41742741 Msa1154330:CDS 40.0%
!! TTTTAGGTGACATGGCTACA+AGG - chr7_4:41742730-41742749 Msa1154330:CDS 40.0%
! ATGGCTACAAGGCCTAATTT+TGG - chr7_4:41742741-41742760 Msa1154330:CDS 40.0%
! TGGCTACAAGGCCTAATTTT+GGG - chr7_4:41742742-41742761 Msa1154330:CDS 40.0%
TATCTGTTGGCACCAACATT+GGG - chr7_4:41742831-41742850 Msa1154330:CDS 40.0%
GGTTCAAACATGTGACTCTT+AGG + chr7_4:41742897-41742916 None:intergenic 40.0%
AAGAGTCACATGTTTGAACC+TGG - chr7_4:41742897-41742916 Msa1154330:CDS 40.0%
ACCTGGTGCCTATAGTTTAT+TGG - chr7_4:41742914-41742933 Msa1154330:CDS 40.0%
TCCAATAAACTATAGGCACC+AGG + chr7_4:41742918-41742937 None:intergenic 40.0%
! ATTTTTGCCATTGTTGGGCT+AGG - chr7_4:41742969-41742988 Msa1154330:CDS 40.0%
GTTGGAACAGCACTTTCAAA+TGG - chr7_4:41743002-41743021 Msa1154330:CDS 40.0%
AACAGCACTTTCAAATGGGT+TGG - chr7_4:41743007-41743026 Msa1154330:CDS 40.0%
ATTGCTGAATGGTCTCACTT+GGG - chr7_4:41743088-41743107 Msa1154330:CDS 40.0%
TCAGGTACCAAACTCTCAAT+GGG - chr7_4:41743138-41743157 Msa1154330:CDS 40.0%
!! GGAGAAAGTGCTTAATCCTT+TGG - chr7_4:41743175-41743194 Msa1154330:CDS 40.0%
ACTGAGGTCTTGAATACCAA+AGG + chr7_4:41743194-41743213 None:intergenic 40.0%
! GGGAATGACTTTTGTGATGT+TGG - chr7_4:41743247-41743266 Msa1154330:CDS 40.0%
! TGACTTTTGTGATGTTGGCA+AGG - chr7_4:41743252-41743271 Msa1154330:CDS 40.0%
TGAGAAGAAGCCATCACAAT+TGG - chr7_4:41743298-41743317 Msa1154330:intron 40.0%
AATCCAACCTCCAATTGTGA+TGG + chr7_4:41743311-41743330 None:intergenic 40.0%
TCACAATTGGAGGTTGGATT+AGG - chr7_4:41743311-41743330 Msa1154330:intron 40.0%
GATTAGGTGAGAAGGTTGAA+AGG - chr7_4:41743327-41743346 Msa1154330:intron 40.0%
!! TCGCTTTGTTGGTGTTGTTT+GGG + chr7_4:41743377-41743396 None:intergenic 40.0%
!! ATCGCTTTGTTGGTGTTGTT+TGG + chr7_4:41743378-41743397 None:intergenic 40.0%
GATTGATGCTATCGCTTTGT+TGG + chr7_4:41743388-41743407 None:intergenic 40.0%
CTGAAAGAGTTTGTCAGAGT+AGG + chr7_4:41743492-41743511 None:intergenic 40.0%
GTATGTAGCGTAGATTGAGA+TGG - chr7_4:41743522-41743541 Msa1154330:intron 40.0%
ATGTAGCGTAGATTGAGATG+GGG - chr7_4:41743524-41743543 Msa1154330:intron 40.0%
! GGGGATTTGGAATAAGTTTC+TGG - chr7_4:41743544-41743563 Msa1154330:intron 40.0%
GGAGACCAAAATCCAATACA+TGG + chr7_4:41743634-41743653 None:intergenic 40.0%
TTTGGCTGCTACATTGGTGA+AGG - chr7_4:41741880-41741899 Msa1154330:three_prime_UTR 45.0%
GGAGAATGAATCTGCTATGG+AGG - chr7_4:41741901-41741920 Msa1154330:three_prime_UTR 45.0%
GTGAGGATCAGATGATCCAA+AGG - chr7_4:41741939-41741958 Msa1154330:three_prime_UTR 45.0%
CGGAGGATTAAAACGCAGAA+GGG + chr7_4:41742385-41742404 None:intergenic 45.0%
ACGGAGGATTAAAACGCAGA+AGG + chr7_4:41742386-41742405 None:intergenic 45.0%
!! CTGCGTTTTAATCCTCCGTT+TGG - chr7_4:41742387-41742406 Msa1154330:CDS 45.0%
AGTGCATGACTCTGACCAAA+CGG + chr7_4:41742405-41742424 None:intergenic 45.0%
AACCGAGGTTGCGGAAATAA+TGG + chr7_4:41742441-41742460 None:intergenic 45.0%
!! AATCTTTGGGGCAAATGGGT+TGG + chr7_4:41742492-41742511 None:intergenic 45.0%
!!! TCCTTTCAAGGTTTTGAGCG+AGG - chr7_4:41742683-41742702 Msa1154330:CDS 45.0%
TCCTCGCTCAAAACCTTGAA+AGG + chr7_4:41742687-41742706 None:intergenic 45.0%
!!! GGTGTCAGTTCTGCTGTTTT+AGG - chr7_4:41742714-41742733 Msa1154330:CDS 45.0%
GTATCTGTTGGCACCAACAT+TGG - chr7_4:41742830-41742849 Msa1154330:CDS 45.0%
ACTGTAGCAGATCCCAATGT+TGG + chr7_4:41742846-41742865 None:intergenic 45.0%
ATCTGCTACAGTCAAAGTGC+CGG - chr7_4:41742854-41742873 Msa1154330:CDS 45.0%
GGACAAGATGCAAAGATAGC+CGG + chr7_4:41742876-41742895 None:intergenic 45.0%
TTGTTTGGGGACTCAAAGCT+GGG + chr7_4:41743056-41743075 None:intergenic 45.0%
! ATGTAGGTGGAGGCTTGTTT+GGG + chr7_4:41743070-41743089 None:intergenic 45.0%
! AATGTAGGTGGAGGCTTGTT+TGG + chr7_4:41743071-41743090 None:intergenic 45.0%
AGACCATTCAGCAATGTAGG+TGG + chr7_4:41743083-41743102 None:intergenic 45.0%
GTGAGACCATTCAGCAATGT+AGG + chr7_4:41743086-41743105 None:intergenic 45.0%
CATTGCTGAATGGTCTCACT+TGG - chr7_4:41743087-41743106 Msa1154330:CDS 45.0%
CATTGAGAGTTTGGTACCTG+AGG + chr7_4:41743139-41743158 None:intergenic 45.0%
CTCAGGTACCAAACTCTCAA+TGG - chr7_4:41743137-41743156 Msa1154330:CDS 45.0%
CAGGTACCAAACTCTCAATG+GGG - chr7_4:41743139-41743158 Msa1154330:CDS 45.0%
ACTCAACCCCATTGAGAGTT+TGG + chr7_4:41743148-41743167 None:intergenic 45.0%
CAATGGGGTTGAGTTCATGT+TGG - chr7_4:41743154-41743173 Msa1154330:CDS 45.0%
GGTATTCAAGACCTCAGTTG+TGG - chr7_4:41743196-41743215 Msa1154330:CDS 45.0%
AGGTGTGCGAACAATGTTCT+TGG - chr7_4:41743224-41743243 Msa1154330:CDS 45.0%
GGTGTGCGAACAATGTTCTT+GGG - chr7_4:41743225-41743244 Msa1154330:CDS 45.0%
GTGTGCGAACAATGTTCTTG+GGG - chr7_4:41743226-41743245 Msa1154330:CDS 45.0%
TGTGCGAACAATGTTCTTGG+GGG - chr7_4:41743227-41743246 Msa1154330:CDS 45.0%
TGATGTTGGCAAGGTTGACA+GGG - chr7_4:41743261-41743280 Msa1154330:CDS 45.0%
TTGACAGGGTCACAAAATGC+TGG - chr7_4:41743275-41743294 Msa1154330:CDS 45.0%
GAAGAAGCCATCACAATTGG+AGG - chr7_4:41743301-41743320 Msa1154330:intron 45.0%
AAGCCATCACAATTGGAGGT+TGG - chr7_4:41743305-41743324 Msa1154330:intron 45.0%
TGTAGCGTAGATTGAGATGG+GGG - chr7_4:41743525-41743544 Msa1154330:intron 45.0%
GTAGATTGAGATGGGGGATT+TGG - chr7_4:41743531-41743550 Msa1154330:intron 45.0%
TTTGGCTGCTACATTGGTGA+AGG - chr7_4:41741880-41741899 Msa1154330:three_prime_UTR 45.0%
GGAGAATGAATCTGCTATGG+AGG - chr7_4:41741901-41741920 Msa1154330:three_prime_UTR 45.0%
GTGAGGATCAGATGATCCAA+AGG - chr7_4:41741939-41741958 Msa1154330:three_prime_UTR 45.0%
CGGAGGATTAAAACGCAGAA+GGG + chr7_4:41742385-41742404 None:intergenic 45.0%
ACGGAGGATTAAAACGCAGA+AGG + chr7_4:41742386-41742405 None:intergenic 45.0%
!! CTGCGTTTTAATCCTCCGTT+TGG - chr7_4:41742387-41742406 Msa1154330:CDS 45.0%
AGTGCATGACTCTGACCAAA+CGG + chr7_4:41742405-41742424 None:intergenic 45.0%
AACCGAGGTTGCGGAAATAA+TGG + chr7_4:41742441-41742460 None:intergenic 45.0%
!! AATCTTTGGGGCAAATGGGT+TGG + chr7_4:41742492-41742511 None:intergenic 45.0%
!!! TCCTTTCAAGGTTTTGAGCG+AGG - chr7_4:41742683-41742702 Msa1154330:CDS 45.0%
TCCTCGCTCAAAACCTTGAA+AGG + chr7_4:41742687-41742706 None:intergenic 45.0%
!!! GGTGTCAGTTCTGCTGTTTT+AGG - chr7_4:41742714-41742733 Msa1154330:CDS 45.0%
GTATCTGTTGGCACCAACAT+TGG - chr7_4:41742830-41742849 Msa1154330:CDS 45.0%
ACTGTAGCAGATCCCAATGT+TGG + chr7_4:41742846-41742865 None:intergenic 45.0%
ATCTGCTACAGTCAAAGTGC+CGG - chr7_4:41742854-41742873 Msa1154330:CDS 45.0%
GGACAAGATGCAAAGATAGC+CGG + chr7_4:41742876-41742895 None:intergenic 45.0%
TTGTTTGGGGACTCAAAGCT+GGG + chr7_4:41743056-41743075 None:intergenic 45.0%
! ATGTAGGTGGAGGCTTGTTT+GGG + chr7_4:41743070-41743089 None:intergenic 45.0%
! AATGTAGGTGGAGGCTTGTT+TGG + chr7_4:41743071-41743090 None:intergenic 45.0%
AGACCATTCAGCAATGTAGG+TGG + chr7_4:41743083-41743102 None:intergenic 45.0%
GTGAGACCATTCAGCAATGT+AGG + chr7_4:41743086-41743105 None:intergenic 45.0%
CATTGCTGAATGGTCTCACT+TGG - chr7_4:41743087-41743106 Msa1154330:CDS 45.0%
CATTGAGAGTTTGGTACCTG+AGG + chr7_4:41743139-41743158 None:intergenic 45.0%
CTCAGGTACCAAACTCTCAA+TGG - chr7_4:41743137-41743156 Msa1154330:CDS 45.0%
CAGGTACCAAACTCTCAATG+GGG - chr7_4:41743139-41743158 Msa1154330:CDS 45.0%
ACTCAACCCCATTGAGAGTT+TGG + chr7_4:41743148-41743167 None:intergenic 45.0%
CAATGGGGTTGAGTTCATGT+TGG - chr7_4:41743154-41743173 Msa1154330:CDS 45.0%
GGTATTCAAGACCTCAGTTG+TGG - chr7_4:41743196-41743215 Msa1154330:CDS 45.0%
AGGTGTGCGAACAATGTTCT+TGG - chr7_4:41743224-41743243 Msa1154330:CDS 45.0%
GGTGTGCGAACAATGTTCTT+GGG - chr7_4:41743225-41743244 Msa1154330:CDS 45.0%
GTGTGCGAACAATGTTCTTG+GGG - chr7_4:41743226-41743245 Msa1154330:CDS 45.0%
TGTGCGAACAATGTTCTTGG+GGG - chr7_4:41743227-41743246 Msa1154330:CDS 45.0%
TGATGTTGGCAAGGTTGACA+GGG - chr7_4:41743261-41743280 Msa1154330:CDS 45.0%
TTGACAGGGTCACAAAATGC+TGG - chr7_4:41743275-41743294 Msa1154330:CDS 45.0%
GAAGAAGCCATCACAATTGG+AGG - chr7_4:41743301-41743320 Msa1154330:intron 45.0%
AAGCCATCACAATTGGAGGT+TGG - chr7_4:41743305-41743324 Msa1154330:intron 45.0%
TGTAGCGTAGATTGAGATGG+GGG - chr7_4:41743525-41743544 Msa1154330:intron 45.0%
GTAGATTGAGATGGGGGATT+TGG - chr7_4:41743531-41743550 Msa1154330:intron 45.0%
!! TTGGGGCAAATGGGTTGGTT+TGG + chr7_4:41742487-41742506 None:intergenic 50.0%
!! CTTAGCTTTGCTGGAGGAGA+TGG - chr7_4:41742516-41742535 Msa1154330:CDS 50.0%
!! GGACGTGATGATGGAAAGTC+AGG - chr7_4:41742588-41742607 Msa1154330:CDS 50.0%
!!! CAAGGTTTTGAGCGAGGAGT+TGG - chr7_4:41742689-41742708 Msa1154330:CDS 50.0%
!! GTTTTGAGCGAGGAGTTGGT+TGG - chr7_4:41742693-41742712 Msa1154330:CDS 50.0%
!! CAAATGGGTTGGTCAGTACG+AGG - chr7_4:41743018-41743037 Msa1154330:CDS 50.0%
GGTCAGTACGAGGAAGAAGA+TGG - chr7_4:41743028-41743047 Msa1154330:CDS 50.0%
CTTGTTTGGGGACTCAAAGC+TGG + chr7_4:41743057-41743076 None:intergenic 50.0%
! TGTAGGTGGAGGCTTGTTTG+GGG + chr7_4:41743069-41743088 None:intergenic 50.0%
CCATTCAGCAATGTAGGTGG+AGG + chr7_4:41743080-41743099 None:intergenic 50.0%
CCTCCACCTACATTGCTGAA+TGG - chr7_4:41743077-41743096 Msa1154330:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG - chr7_4:41743100-41743119 Msa1154330:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG - chr7_4:41743101-41743120 Msa1154330:CDS 50.0%
AGACCTCAGTTGTGGTTCTC+AGG - chr7_4:41743204-41743223 Msa1154330:CDS 50.0%
ACACCTGAGAACCACAACTG+AGG + chr7_4:41743210-41743229 None:intergenic 50.0%
GTGATGTTGGCAAGGTTGAC+AGG - chr7_4:41743260-41743279 Msa1154330:CDS 50.0%
! GGAGGTTGGATTAGGTGAGA+AGG - chr7_4:41743319-41743338 Msa1154330:intron 50.0%
CAAGGTTGTTGTAGAGCTCG+CGG - chr7_4:41743434-41743453 Msa1154330:intron 50.0%
!! TTGGGGCAAATGGGTTGGTT+TGG + chr7_4:41742487-41742506 None:intergenic 50.0%
!! CTTAGCTTTGCTGGAGGAGA+TGG - chr7_4:41742516-41742535 Msa1154330:CDS 50.0%
!! GGACGTGATGATGGAAAGTC+AGG - chr7_4:41742588-41742607 Msa1154330:CDS 50.0%
!!! CAAGGTTTTGAGCGAGGAGT+TGG - chr7_4:41742689-41742708 Msa1154330:CDS 50.0%
!! GTTTTGAGCGAGGAGTTGGT+TGG - chr7_4:41742693-41742712 Msa1154330:CDS 50.0%
!! CAAATGGGTTGGTCAGTACG+AGG - chr7_4:41743018-41743037 Msa1154330:CDS 50.0%
GGTCAGTACGAGGAAGAAGA+TGG - chr7_4:41743028-41743047 Msa1154330:CDS 50.0%
CTTGTTTGGGGACTCAAAGC+TGG + chr7_4:41743057-41743076 None:intergenic 50.0%
! TGTAGGTGGAGGCTTGTTTG+GGG + chr7_4:41743069-41743088 None:intergenic 50.0%
CCATTCAGCAATGTAGGTGG+AGG + chr7_4:41743080-41743099 None:intergenic 50.0%
CCTCCACCTACATTGCTGAA+TGG - chr7_4:41743077-41743096 Msa1154330:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG - chr7_4:41743100-41743119 Msa1154330:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG - chr7_4:41743101-41743120 Msa1154330:CDS 50.0%
AGACCTCAGTTGTGGTTCTC+AGG - chr7_4:41743204-41743223 Msa1154330:CDS 50.0%
ACACCTGAGAACCACAACTG+AGG + chr7_4:41743210-41743229 None:intergenic 50.0%
GTGATGTTGGCAAGGTTGAC+AGG - chr7_4:41743260-41743279 Msa1154330:CDS 50.0%
! GGAGGTTGGATTAGGTGAGA+AGG - chr7_4:41743319-41743338 Msa1154330:intron 50.0%
CAAGGTTGTTGTAGAGCTCG+CGG - chr7_4:41743434-41743453 Msa1154330:intron 50.0%
GCATGACTCTGACCAAACGG+AGG + chr7_4:41742402-41742421 None:intergenic 55.0%
AGCTTTGCTGGAGGAGATGG+TGG - chr7_4:41742519-41742538 Msa1154330:CDS 55.0%
! TTTGCTGGAGGAGATGGTGG+AGG - chr7_4:41742522-41742541 Msa1154330:CDS 55.0%
!! TTGCTGGAGGAGATGGTGGA+GGG - chr7_4:41742523-41742542 Msa1154330:CDS 55.0%
!! TGGTGGCGGAGATGGAAGTT+CGG - chr7_4:41742566-41742585 Msa1154330:CDS 55.0%
GGAAGTTCGGGACGTGATGA+TGG - chr7_4:41742579-41742598 Msa1154330:CDS 55.0%
ACCAGCACCTAGCCCAACAA+TGG + chr7_4:41742979-41742998 None:intergenic 55.0%
TGGGTTTCAGCAGCAACCTC+AGG - chr7_4:41743120-41743139 Msa1154330:CDS 55.0%
CGCGAGCTCTACAACAACCT+TGG + chr7_4:41743436-41743455 None:intergenic 55.0%
GCATGACTCTGACCAAACGG+AGG + chr7_4:41742402-41742421 None:intergenic 55.0%
AGCTTTGCTGGAGGAGATGG+TGG - chr7_4:41742519-41742538 Msa1154330:CDS 55.0%
! TTTGCTGGAGGAGATGGTGG+AGG - chr7_4:41742522-41742541 Msa1154330:CDS 55.0%
!! TTGCTGGAGGAGATGGTGGA+GGG - chr7_4:41742523-41742542 Msa1154330:CDS 55.0%
!! TGGTGGCGGAGATGGAAGTT+CGG - chr7_4:41742566-41742585 Msa1154330:CDS 55.0%
GGAAGTTCGGGACGTGATGA+TGG - chr7_4:41742579-41742598 Msa1154330:CDS 55.0%
ACCAGCACCTAGCCCAACAA+TGG + chr7_4:41742979-41742998 None:intergenic 55.0%
TGGGTTTCAGCAGCAACCTC+AGG - chr7_4:41743120-41743139 Msa1154330:CDS 55.0%
CGCGAGCTCTACAACAACCT+TGG + chr7_4:41743436-41743455 None:intergenic 55.0%
!! TGCTGGAGGAGATGGTGGAG+GGG - chr7_4:41742524-41742543 Msa1154330:CDS 60.0%
! ATGGTGGAGGGGGAGTTGGT+CGG - chr7_4:41742535-41742554 Msa1154330:CDS 60.0%
!! GGTGGCGGAGATGGAAGTTC+GGG - chr7_4:41742567-41742586 Msa1154330:CDS 60.0%
! GCCATTGTTGGGCTAGGTGC+TGG - chr7_4:41742975-41742994 Msa1154330:CDS 60.0%
!! GGGCTAGGTGCTGGTCTTGT+TGG - chr7_4:41742984-41743003 Msa1154330:CDS 60.0%
!! TGCTGGAGGAGATGGTGGAG+GGG - chr7_4:41742524-41742543 Msa1154330:CDS 60.0%
! ATGGTGGAGGGGGAGTTGGT+CGG - chr7_4:41742535-41742554 Msa1154330:CDS 60.0%
!! GGTGGCGGAGATGGAAGTTC+GGG - chr7_4:41742567-41742586 Msa1154330:CDS 60.0%
! GCCATTGTTGGGCTAGGTGC+TGG - chr7_4:41742975-41742994 Msa1154330:CDS 60.0%
!! GGGCTAGGTGCTGGTCTTGT+TGG - chr7_4:41742984-41743003 Msa1154330:CDS 60.0%
!! GCTGGAGGAGATGGTGGAGG+GGG - chr7_4:41742525-41742544 Msa1154330:CDS 65.0%
!! GGAGATGGTGGAGGGGGAGT+TGG - chr7_4:41742531-41742550 Msa1154330:CDS 65.0%
! TGGTGGAGGGGGAGTTGGTC+GGG - chr7_4:41742536-41742555 Msa1154330:CDS 65.0%
!! GCTGGAGGAGATGGTGGAGG+GGG - chr7_4:41742525-41742544 Msa1154330:CDS 65.0%
!! GGAGATGGTGGAGGGGGAGT+TGG - chr7_4:41742531-41742550 Msa1154330:CDS 65.0%
! TGGTGGAGGGGGAGTTGGTC+GGG - chr7_4:41742536-41742555 Msa1154330:CDS 65.0%
! GGTGGAGGGGGAGTTGGTCG+GGG - chr7_4:41742537-41742556 Msa1154330:CDS 70.0%
! GGAGTTGGTCGGGGTGGTGG+TGG - chr7_4:41742546-41742565 Msa1154330:CDS 70.0%
!! GTTGGTCGGGGTGGTGGTGG+TGG - chr7_4:41742549-41742568 Msa1154330:CDS 70.0%
!! GGTGGTGGTGGTGGCGGAGA+TGG - chr7_4:41742558-41742577 Msa1154330:CDS 70.0%
! GGTGGAGGGGGAGTTGGTCG+GGG - chr7_4:41742537-41742556 Msa1154330:CDS 70.0%
! GGAGTTGGTCGGGGTGGTGG+TGG - chr7_4:41742546-41742565 Msa1154330:CDS 70.0%
!! GTTGGTCGGGGTGGTGGTGG+TGG - chr7_4:41742549-41742568 Msa1154330:CDS 70.0%
!! GGTGGTGGTGGTGGCGGAGA+TGG - chr7_4:41742558-41742577 Msa1154330:CDS 70.0%
! GGAGGGGGAGTTGGTCGGGG+TGG - chr7_4:41742540-41742559 Msa1154330:CDS 75.0%
! GGGGGAGTTGGTCGGGGTGG+TGG - chr7_4:41742543-41742562 Msa1154330:CDS 75.0%
!! GGTCGGGGTGGTGGTGGTGG+CGG - chr7_4:41742552-41742571 Msa1154330:CDS 75.0%
! GGAGGGGGAGTTGGTCGGGG+TGG - chr7_4:41742540-41742559 Msa1154330:CDS 75.0%
! GGGGGAGTTGGTCGGGGTGG+TGG - chr7_4:41742543-41742562 Msa1154330:CDS 75.0%
!! GGTCGGGGTGGTGGTGGTGG+CGG - chr7_4:41742552-41742571 Msa1154330:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 41741857 41743805 41741857 ID=Msa1154330;Name=Msa1154330
chr7_4 mRNA 41741857 41743805 41741857 ID=Msa1154330-mRNA-1;Parent=Msa1154330;Name=Msa1154330-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.33|0.66|1|1|3|453|340
chr7_4 exon 41741857 41743298 41741857 ID=Msa1154330-mRNA-1:exon:10206;Parent=Msa1154330-mRNA-1
chr7_4 exon 41743492 41743517 41743492 ID=Msa1154330-mRNA-1:exon:10205;Parent=Msa1154330-mRNA-1
chr7_4 exon 41743798 41743805 41743798 ID=Msa1154330-mRNA-1:exon:10204;Parent=Msa1154330-mRNA-1
chr7_4 CDS 41743798 41743805 41743798 ID=Msa1154330-mRNA-1:cds;Parent=Msa1154330-mRNA-1
chr7_4 CDS 41743492 41743517 41743492 ID=Msa1154330-mRNA-1:cds;Parent=Msa1154330-mRNA-1
chr7_4 CDS 41742310 41743298 41742310 ID=Msa1154330-mRNA-1:cds;Parent=Msa1154330-mRNA-1
chr7_4 three_prime_UTR 41741857 41742309 41741857 ID=Msa1154330-mRNA-1:three_prime_utr;Parent=Msa1154330-mRNA-1
Gene Sequence

>Msa1154330

ATGTTCAGGTTTTACCTTGCTGTTCTAGAATCAGATCAAATGGAAACTATGGCCCTTCTGCGTTTTAATCCTCCGTTTGGTCAGAGTCATGCACTTTCATTTTCATTACCATTATTTCCGCAACCTCGGTTTCATAATTGTTCTATATATCTTACCAAACCAACCCATTTGCCCCAAAGATTAAAACTTAGCTTTGCTGGAGGAGATGGTGGAGGGGGAGTTGGTCGGGGTGGTGGTGGTGGCGGAGATGGAAGTTCGGGACGTGATGATGGAAAGTCAGGTGATTCATCTTTTGGAATTTTGGGTATGTTTCTGAATGGTTGGAGATCAAGGGTTGCTGCTGATCCACAATTTCCTTTCAAGGTTTTGAGCGAGGAGTTGGTTGGTGTCAGTTCTGCTGTTTTAGGTGACATGGCTACAAGGCCTAATTTTGGGTTGAATGAACTTGATTTTGTATTTTCAACTCTTGTTGTTGGTGCTATTCTCAATTTTACACTCATGTATCTGTTGGCACCAACATTGGGATCTGCTACAGTCAAAGTGCCGGCTATCTTTGCATCTTGTCCTAAGAGTCACATGTTTGAACCTGGTGCCTATAGTTTATTGGATAGGTTTGGAACTTTGGTGTATAAAGGAACTATTTTTGCCATTGTTGGGCTAGGTGCTGGTCTTGTTGGAACAGCACTTTCAAATGGGTTGGTCAGTACGAGGAAGAAGATGGATCCCAGCTTTGAGTCCCCAAACAAGCCTCCACCTACATTGCTGAATGGTCTCACTTGGGCTGCTCATATGGGTTTCAGCAGCAACCTCAGGTACCAAACTCTCAATGGGGTTGAGTTCATGTTGGAGAAAGTGCTTAATCCTTTGGTATTCAAGACCTCAGTTGTGGTTCTCAGGTGTGCGAACAATGTTCTTGGGGGAATGACTTTTGTGATGTTGGCAAGGTTGACAGGGTCACAAAATGCTGGTGAGAAGAAGCCATCACAATTGGAGGTTGGATTAGGTGAGAAGGTTGAAAGGTAA

Protein sequence

>Msa1154330

MFRFYLAVLESDQMETMALLRFNPPFGQSHALSFSLPLFPQPRFHNCSIYLTKPTHLPQRLKLSFAGGDGGGGVGRGGGGGGDGSSGRDDGKSGDSSFGILGMFLNGWRSRVAADPQFPFKVLSEELVGVSSAVLGDMATRPNFGLNELDFVFSTLVVGAILNFTLMYLLAPTLGSATVKVPAIFASCPKSHMFEPGAYSLLDRFGTLVYKGTIFAIVGLGAGLVGTALSNGLVSTRKKMDPSFESPNKPPPTLLNGLTWAAHMGFSSNLRYQTLNGVEFMLEKVLNPLVFKTSVVVLRCANNVLGGMTFVMLARLTGSQNAGEKKPSQLEVGLGEKVER*