AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265580 MtrunA17_Chr2g0330391 82.000 250 21 2 1 228 1 248 2.82e-142 398
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265580 AT1G55140.1 57.534 219 78 2 22 225 10 228 1.78e-81 244
Msa0265580 AT3G13740.1 59.361 219 69 2 23 225 10 224 6.03e-81 243
Msa0265580 AT3G13740.3 59.535 215 75 1 23 225 10 224 9.02e-80 240
Msa0265580 AT3G13740.2 71.812 149 42 0 77 225 1 149 2.17e-71 216
Msa0265580 AT3G13740.6 59.016 183 63 1 23 193 10 192 6.48e-66 202
Msa0265580 AT3G13740.5 53.797 158 61 1 23 168 10 167 1.68e-50 162
Msa0265580 AT1G55140.2 53.459 159 59 2 22 165 10 168 9.39e-49 158
Msa0265580 AT3G13740.4 53.521 142 54 1 23 152 10 151 5.88e-43 143

Find 69 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTTCTATATCTCAATTT+TGG 0.187327 2_2:-65942205 Msa0265580:three_prime_UTR
AGAACACGATGAAACCTATT+TGG 0.206219 2_2:-65946346 Msa0265580:CDS
TTGGTTATTTGACAGATTTC+TGG 0.213200 2_2:-65942336 Msa0265580:three_prime_UTR
CTCGTCAATGCCTTTGAATT+TGG 0.238218 2_2:-65943207 Msa0265580:CDS
CTAGGAGCGTTGCGGTTATA+AGG 0.245759 2_2:+65946513 None:intergenic
TAAAGACTATATCAGTAAAT+TGG 0.274907 2_2:-65942569 Msa0265580:three_prime_UTR
AGAGGAGGAGATTGTGGTTT+TGG 0.296195 2_2:+65946474 None:intergenic
GCTGCTACCTTAGCTTATAT+TGG 0.304372 2_2:-65946264 Msa0265580:CDS
GTTCGATCCATGGTATTCTT+TGG 0.327907 2_2:-65942592 Msa0265580:three_prime_UTR
TCTGGCAGGGTTTGCAACTC+TGG 0.332632 2_2:-65942318 Msa0265580:intron
GAACGAGGTTTAACGACTTT+AGG 0.348737 2_2:+65946297 None:intergenic
ATCTTTGGGTATTCTTCTCC+TGG 0.356099 2_2:-65942652 Msa0265580:three_prime_UTR
CCTATTTGGGATATGATAGA+TGG 0.357513 2_2:-65946332 Msa0265580:CDS
CAAGCAAAACTAAGACAAAA+AGG 0.357900 2_2:-65943776 Msa0265580:CDS
TATTGGTGATTGCATTTATG+AGG 0.357917 2_2:-65946247 Msa0265580:intron
CCATCTATCATATCCCAAAT+AGG 0.385713 2_2:+65946332 None:intergenic
CAGTGGATAAGGTAGATCTT+TGG 0.386067 2_2:-65942667 Msa0265580:exon
AAGACAGTTCAGTGAAGCTT+TGG 0.390817 2_2:-65942355 Msa0265580:three_prime_UTR
AGTGGATAAGGTAGATCTTT+GGG 0.400073 2_2:-65942666 Msa0265580:exon
GTTTATCTTCTTCATTATCA+TGG 0.401690 2_2:-65946605 Msa0265580:CDS
TAGGAGCGTTGCGGTTATAA+GGG 0.424850 2_2:+65946514 None:intergenic
ATCAGACACAACAGAAGTTT+CGG 0.426499 2_2:+65942228 None:intergenic
AACCAGTAGTAAAAGCTTCA+TGG 0.429937 2_2:-65946554 Msa0265580:CDS
GTCAATGCCTTTGAATTTGG+AGG 0.436135 2_2:-65943204 Msa0265580:CDS
ACTGGTTTCAATTTGGATGA+AGG 0.440747 2_2:+65946570 None:intergenic
GGGTATTCTTCTCCTGGAGC+AGG 0.441533 2_2:-65942646 Msa0265580:three_prime_UTR
TGTGTTGTGTACAACGGTTA+TGG 0.444115 2_2:-65942432 Msa0265580:three_prime_UTR
GAACACGATGAAACCTATTT+GGG 0.451212 2_2:-65946345 Msa0265580:CDS
GATGAGCTGAACAGTGGATA+AGG 0.458530 2_2:-65942678 Msa0265580:exon
TTTGACAAATGTGAATCGCT+TGG 0.467151 2_2:-65943264 Msa0265580:CDS
TCCTTACGGGTAGAAGGTGC+TGG 0.475784 2_2:+65946444 None:intergenic
ATTGTATTCTTCAATACTCA+AGG 0.493781 2_2:+65945138 None:intergenic
TTTCAGGGATGTTCTTCGAT+GGG 0.502029 2_2:-65943814 Msa0265580:intron
TTATTTGACAGATTTCTGGC+AGG 0.512610 2_2:-65942332 Msa0265580:three_prime_UTR
ATTTCAGGGATGTTCTTCGA+TGG 0.515754 2_2:-65943815 Msa0265580:intron
ACCAGTAGTAAAAGCTTCAT+GGG 0.516338 2_2:-65946553 Msa0265580:CDS
GTGTTGTGTACAACGGTTAT+GGG 0.518884 2_2:-65942431 Msa0265580:three_prime_UTR
ATTAATTCCTCCAAATTCAA+AGG 0.528573 2_2:+65943197 None:intergenic
TTTCAATTTGGATGAAGGAA+AGG 0.529666 2_2:+65946575 None:intergenic
GAAGGTGCTGGTGAAGTGAG+AGG 0.529822 2_2:+65946456 None:intergenic
ATTACTAACAATTACAAAGA+TGG 0.530107 2_2:+65942407 None:intergenic
TTAACGACTTTAGGTGGAGT+TGG 0.531286 2_2:+65946306 None:intergenic
GCAATCACCAATATAAGCTA+AGG 0.541049 2_2:+65946257 None:intergenic
ATTAAGTTAGTTGAATGCTA+AGG 0.542275 2_2:-65942261 Msa0265580:three_prime_UTR
CGAGGTTTAACGACTTTAGG+TGG 0.556732 2_2:+65946300 None:intergenic
TATTTGACAGATTTCTGGCA+GGG 0.557153 2_2:-65942331 Msa0265580:three_prime_UTR
TAGTAATGATCTTCTTCAGA+GGG 0.557858 2_2:-65942391 Msa0265580:three_prime_UTR
ACGAAATTCATCATCATGCA+AGG 0.558857 2_2:-65946627 None:intergenic
GAAGTGAGAGGAGGAGATTG+TGG 0.573383 2_2:+65946468 None:intergenic
TTAGTAATGATCTTCTTCAG+AGG 0.582857 2_2:-65942392 Msa0265580:three_prime_UTR
TTCAGGGATGTTCTTCGATG+GGG 0.583400 2_2:-65943813 Msa0265580:intron
CACATACTTTACCATGCAAG+AGG 0.588628 2_2:-65942489 Msa0265580:three_prime_UTR
ATTGTTGCAAAAGAACTCAA+AGG 0.589150 2_2:+65942458 None:intergenic
TCATGCTAAAATCGATCTTG+TGG 0.589759 2_2:-65942043 Msa0265580:three_prime_UTR
GGTGCTGGTGAAGTGAGAGG+AGG 0.593324 2_2:+65946459 None:intergenic
ATTTCTTATCAGATCAAGAG+AGG 0.597984 2_2:-65944510 Msa0265580:intron
TATTCTTCAATACTCAAGGG+TGG 0.605648 2_2:+65945142 None:intergenic
TTGTATTCTTCAATACTCAA+GGG 0.608670 2_2:+65945139 None:intergenic
ACATGCAGCTATATGCTCGT+AGG 0.628628 2_2:-65945177 Msa0265580:intron
AGGCTTCTGATCCTCTTGCA+TGG 0.629912 2_2:+65942478 None:intergenic
AGCGAACAACTGCCATCACA+CGG 0.636186 2_2:+65945113 None:intergenic
AATATATGTGTTGTGTACAA+CGG 0.643935 2_2:-65942438 Msa0265580:three_prime_UTR
GTCTTTACCAAAGAATACCA+TGG 0.646294 2_2:+65942585 None:intergenic
TAGACAGATGAGCTGAACAG+TGG 0.652117 2_2:-65942684 Msa0265580:CDS
TAAAGTATGTGATTTGAATG+TGG 0.663386 2_2:+65942501 None:intergenic
TTGTGTTCGAATCTATGATG+AGG 0.665172 2_2:-65942144 Msa0265580:three_prime_UTR
AGAATACAATGACCGTGTGA+TGG 0.681673 2_2:-65945125 Msa0265580:CDS
GATGGCAGTTGTTCGCTGTG+AGG 0.703384 2_2:-65945107 Msa0265580:CDS
AGTAATGATCTTCTTCAGAG+GGG 0.707835 2_2:-65942390 Msa0265580:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAGTATTAAAATTAATA+AGG - chr2_2:65942896-65942915 Msa0265580:intron 10.0%
!!! AAAAGTTATTTTATTATGAT+TGG - chr2_2:65943852-65943871 Msa0265580:intron 10.0%
!!! AAAGTTATTTTATTATGATT+GGG - chr2_2:65943853-65943872 Msa0265580:intron 10.0%
!! ATTAGAGAATAATAAATACT+AGG + chr2_2:65942433-65942452 None:intergenic 15.0%
!! AGAAAATATTGTTATCAAAT+AGG - chr2_2:65943255-65943274 Msa0265580:CDS 15.0%
!! TTTAAATTGAAAACAAAGTA+GGG + chr2_2:65943575-65943594 None:intergenic 15.0%
!! ATTTAAATTGAAAACAAAGT+AGG + chr2_2:65943576-65943595 None:intergenic 15.0%
!! TTTCAATTTAAATTTACATG+CGG - chr2_2:65943583-65943602 Msa0265580:intron 15.0%
!! TTAAAAAAGTTAGATAAGTA+AGG - chr2_2:65943666-65943685 Msa0265580:intron 15.0%
!! AAGTTATACAAATTAGATAT+GGG + chr2_2:65943798-65943817 None:intergenic 15.0%
!! AAAGTTATACAAATTAGATA+TGG + chr2_2:65943799-65943818 None:intergenic 15.0%
!!! TCTAATTTGTATAACTTTAT+AGG - chr2_2:65943801-65943820 Msa0265580:CDS 15.0%
!!! TTTTGATGAATTTTATTTCA+GGG - chr2_2:65944806-65944825 Msa0265580:intron 15.0%
!!! ACATTTCTTTAATTTTAAAG+TGG - chr2_2:65945000-65945019 Msa0265580:intron 15.0%
!! AATGACATAAAATAAAGTAG+AGG - chr2_2:65942623-65942642 Msa0265580:three_prime_UTR 20.0%
!!! TCCTATTTGTTATTTTCAAT+TGG - chr2_2:65942818-65942837 Msa0265580:intron 20.0%
!!! TATATATTTTCCAAACTTTG+TGG - chr2_2:65942971-65942990 Msa0265580:intron 20.0%
!! AATCAAAATCGTAATACAAT+TGG + chr2_2:65943090-65943109 None:intergenic 20.0%
!!! TTTTTTTCAACAACATATCA+AGG - chr2_2:65943158-65943177 Msa0265580:intron 20.0%
!!! TTTTTTCAACAACATATCAA+GGG - chr2_2:65943159-65943178 Msa0265580:intron 20.0%
!!! TAATGACTTATGCTTTAAAT+AGG - chr2_2:65943922-65943941 Msa0265580:intron 20.0%
!!! AATGACTTATGCTTTAAATA+GGG - chr2_2:65943923-65943942 Msa0265580:intron 20.0%
!! CTTCATTAAATATGGAAAAT+AGG + chr2_2:65944202-65944221 None:intergenic 20.0%
!! AGAAGAAACTTCATTAAATA+TGG + chr2_2:65944210-65944229 None:intergenic 20.0%
!! ATAGTTTCAAATAAAAAGCA+CGG + chr2_2:65944562-65944581 None:intergenic 20.0%
!!! CTTTTGATGAATTTTATTTC+AGG - chr2_2:65944805-65944824 Msa0265580:intron 20.0%
!! AAGATTTACATTTATATCAC+TGG + chr2_2:65944962-65944981 None:intergenic 20.0%
!! CAAAAGGAATGTATATTAAA+TGG + chr2_2:65945227-65945246 None:intergenic 20.0%
!! GAAAAACTAATGTTAGAATT+GGG - chr2_2:65945393-65945412 Msa0265580:intron 20.0%
!!! GAAATTTTTGTTATCTACAT+AGG - chr2_2:65945632-65945651 Msa0265580:intron 20.0%
!! TAAAGACTATATCAGTAAAT+TGG - chr2_2:65946066-65946085 Msa0265580:intron 20.0%
!! ATTACTAACAATTACAAAGA+TGG + chr2_2:65946231-65946250 None:intergenic 20.0%
!!! TTGTTCTATATCTCAATTTT+GGG - chr2_2:65946431-65946450 Msa0265580:intron 20.0%
! GTTTATCTTCTTCATTATCA+TGG - chr2_2:65942030-65942049 Msa0265580:three_prime_UTR 25.0%
!!! TTTTACTACTGGTTTCAATT+TGG + chr2_2:65942075-65942094 None:intergenic 25.0%
! TAATTATTCGTACCAAACAA+AGG - chr2_2:65942449-65942468 Msa0265580:three_prime_UTR 25.0%
! ACATAAAATAAAGTAGAGGA+AGG - chr2_2:65942627-65942646 Msa0265580:three_prime_UTR 25.0%
! TCTTAATTTCTATGACGATT+GGG - chr2_2:65942723-65942742 Msa0265580:intron 25.0%
! AATAACAAATAGGATGCAAA+GGG + chr2_2:65942812-65942831 None:intergenic 25.0%
! AAATAACAAATAGGATGCAA+AGG + chr2_2:65942813-65942832 None:intergenic 25.0%
! GCCAATTGAAAATAACAAAT+AGG + chr2_2:65942822-65942841 None:intergenic 25.0%
! AAATAAGAAGATCTTTGAGT+TGG - chr2_2:65942857-65942876 Msa0265580:intron 25.0%
! GGACTATTACTTTAAATTGT+AGG - chr2_2:65942937-65942956 Msa0265580:intron 25.0%
! ATATCAAGGGAAAAATTGAT+AGG - chr2_2:65943172-65943191 Msa0265580:intron 25.0%
!!! ACAAATTTTTGAGCTTATAG+CGG + chr2_2:65943312-65943331 None:intergenic 25.0%
! TAGAGTTGAAGTATAAGATT+TGG - chr2_2:65943341-65943360 Msa0265580:intron 25.0%
! TTGTATTCTTCAATACTCAA+GGG + chr2_2:65943499-65943518 None:intergenic 25.0%
! ATTGTATTCTTCAATACTCA+AGG + chr2_2:65943500-65943519 None:intergenic 25.0%
! CATAAATCATGATTTACTTC+TGG + chr2_2:65943897-65943916 None:intergenic 25.0%
!! ATGACTTATGCTTTAAATAG+GGG - chr2_2:65943924-65943943 Msa0265580:intron 25.0%
! GATACACATTGTAATTAGAT+TGG + chr2_2:65944052-65944071 None:intergenic 25.0%
!!! GTTAGAATATGTTACTTTCA+GGG - chr2_2:65944147-65944166 Msa0265580:intron 25.0%
! ATATGAAGATTTATCCTTGT+TGG - chr2_2:65944268-65944287 Msa0265580:intron 25.0%
! TATGAAGATTTATCCTTGTT+GGG - chr2_2:65944269-65944288 Msa0265580:intron 25.0%
! ATCATGAGATAAACTCTATA+GGG + chr2_2:65944336-65944355 None:intergenic 25.0%
! AAAAAAAGCAAACATACTTC+TGG - chr2_2:65944659-65944678 Msa0265580:intron 25.0%
! GAAATTGCAAAATAATCATG+TGG + chr2_2:65945179-65945198 None:intergenic 25.0%
!!! ATCTGGTTTTCAATTACAAA+AGG + chr2_2:65945243-65945262 None:intergenic 25.0%
! ATTATTCCTATCAAACTATC+TGG + chr2_2:65945260-65945279 None:intergenic 25.0%
!! AACACTTTTCAGATCATAAA+AGG + chr2_2:65945299-65945318 None:intergenic 25.0%
! GGAAAAACTAATGTTAGAAT+TGG - chr2_2:65945392-65945411 Msa0265580:intron 25.0%
! ATTAATTCCTCCAAATTCAA+AGG + chr2_2:65945441-65945460 None:intergenic 25.0%
!!! TTTCAGTTTCTGTTATTTCT+GGG + chr2_2:65945587-65945606 None:intergenic 25.0%
!!! ATTTCAGTTTCTGTTATTTC+TGG + chr2_2:65945588-65945607 None:intergenic 25.0%
! ACTGAAATAAGAAATACAAC+TGG - chr2_2:65945600-65945619 Msa0265580:intron 25.0%
! ACACTATTTAATATCACAAG+AGG + chr2_2:65945661-65945680 None:intergenic 25.0%
! TGTGATATTAAATAGTGTTC+TGG - chr2_2:65945663-65945682 Msa0265580:intron 25.0%
! CATGTAATGTAATACAAGTT+GGG + chr2_2:65945723-65945742 None:intergenic 25.0%
! TTGTATTACATTACATGGTA+GGG - chr2_2:65945726-65945745 Msa0265580:intron 25.0%
! ATTAACAAAACTTCCTTAGA+TGG - chr2_2:65945865-65945884 Msa0265580:intron 25.0%
! TAAAGTATGTGATTTGAATG+TGG + chr2_2:65946137-65946156 None:intergenic 25.0%
! AATATATGTGTTGTGTACAA+CGG - chr2_2:65946197-65946216 Msa0265580:intron 25.0%
! ATTAAGTTAGTTGAATGCTA+AGG - chr2_2:65946374-65946393 Msa0265580:CDS 25.0%
!! CTTGTTCTATATCTCAATTT+TGG - chr2_2:65946430-65946449 Msa0265580:intron 25.0%
!! AATTTTACAATATGCAACCA+TGG + chr2_2:65946458-65946477 None:intergenic 25.0%
!!! TGAATTTTCATTGATTTGCA+AGG + chr2_2:65946565-65946584 None:intergenic 25.0%
TTTCAATTTGGATGAAGGAA+AGG + chr2_2:65942063-65942082 None:intergenic 30.0%
! GGAAATGTAATTTTCCTTAC+GGG + chr2_2:65942207-65942226 None:intergenic 30.0%
! CGGAAATGTAATTTTCCTTA+CGG + chr2_2:65942208-65942227 None:intergenic 30.0%
! TCTTCAATTTTGCCTATAGT+GGG + chr2_2:65942257-65942276 None:intergenic 30.0%
! TTCTTCAATTTTGCCTATAG+TGG + chr2_2:65942258-65942277 None:intergenic 30.0%
! TATTGGTGATTGCATTTATG+AGG - chr2_2:65942388-65942407 Msa0265580:three_prime_UTR 30.0%
CTTACGAATTCAAAATCTTC+TGG + chr2_2:65942555-65942574 None:intergenic 30.0%
! CAGAAGATTTTGAATTCGTA+AGG - chr2_2:65942553-65942572 Msa0265580:three_prime_UTR 30.0%
GTCTTAATTTCTATGACGAT+TGG - chr2_2:65942722-65942741 Msa0265580:intron 30.0%
AAGGAAAACAAAGCTAAATG+TGG - chr2_2:65942915-65942934 Msa0265580:intron 30.0%
AGGAAAACAAAGCTAAATGT+GGG - chr2_2:65942916-65942935 Msa0265580:intron 30.0%
TAAATTTACATGCGGAAAGA+CGG - chr2_2:65943591-65943610 Msa0265580:intron 30.0%
AACTTCCTAAATCCCAATTA+GGG + chr2_2:65943766-65943785 None:intergenic 30.0%
TAACTTCCTAAATCCCAATT+AGG + chr2_2:65943767-65943786 None:intergenic 30.0%
TGCTTATTGAATTTCTCTTG+TGG + chr2_2:65943969-65943988 None:intergenic 30.0%
ATCCTGCAAACAAACAAAAA+AGG + chr2_2:65944077-65944096 None:intergenic 30.0%
ATTTCTTATCAGATCAAGAG+AGG - chr2_2:65944125-65944144 Msa0265580:intron 30.0%
!! GGTTAGAATATGTTACTTTC+AGG - chr2_2:65944146-65944165 Msa0265580:intron 30.0%
GATCATGAGATAAACTCTAT+AGG + chr2_2:65944337-65944356 None:intergenic 30.0%
!! ATGTTCTGAAATCTGTGTTA+AGG - chr2_2:65944455-65944474 Msa0265580:intron 30.0%
TATTCTAGTGCTAGTTCAAT+AGG - chr2_2:65944708-65944727 Msa0265580:intron 30.0%
ATTCTAGTGCTAGTTCAATA+GGG - chr2_2:65944709-65944728 Msa0265580:intron 30.0%
CAAGCAAAACTAAGACAAAA+AGG - chr2_2:65944859-65944878 Msa0265580:intron 30.0%
TAGTAAGTTCCTTCAAACTT+CGG - chr2_2:65944928-65944947 Msa0265580:intron 30.0%
TGAAAACCAGATAGTTTGAT+AGG - chr2_2:65945251-65945270 Msa0265580:intron 30.0%
GATCGAAACTTACTCTAATA+CGG - chr2_2:65945543-65945562 Msa0265580:intron 30.0%
CCATGTAATGTAATACAAGT+TGG + chr2_2:65945724-65945743 None:intergenic 30.0%
CCAACTTGTATTACATTACA+TGG - chr2_2:65945721-65945740 Msa0265580:intron 30.0%
CTTGTATTACATTACATGGT+AGG - chr2_2:65945725-65945744 Msa0265580:intron 30.0%
AAAACTTCCTTAGATGGAAT+GGG - chr2_2:65945871-65945890 Msa0265580:intron 30.0%
! TAAAGATTTTGTTCGATCCA+TGG - chr2_2:65946033-65946052 Msa0265580:intron 30.0%
ATTGTTGCAAAAGAACTCAA+AGG + chr2_2:65946180-65946199 None:intergenic 30.0%
TTAGTAATGATCTTCTTCAG+AGG - chr2_2:65946243-65946262 Msa0265580:intron 30.0%
TAGTAATGATCTTCTTCAGA+GGG - chr2_2:65946244-65946263 Msa0265580:intron 30.0%
TTGGTTATTTGACAGATTTC+TGG - chr2_2:65946299-65946318 Msa0265580:CDS 30.0%
!!! TTTGCAACTCTGGTTTTATT+TGG - chr2_2:65946327-65946346 Msa0265580:CDS 30.0%
! ACTGGTTTCAATTTGGATGA+AGG + chr2_2:65942068-65942087 None:intergenic 35.0%
AACCAGTAGTAAAAGCTTCA+TGG - chr2_2:65942081-65942100 Msa0265580:three_prime_UTR 35.0%
ACCAGTAGTAAAAGCTTCAT+GGG - chr2_2:65942082-65942101 Msa0265580:three_prime_UTR 35.0%
! TAATTTTCCTTACGGGTAGA+AGG + chr2_2:65942200-65942219 None:intergenic 35.0%
AGAACACGATGAAACCTATT+TGG - chr2_2:65942289-65942308 Msa0265580:intron 35.0%
GAACACGATGAAACCTATTT+GGG - chr2_2:65942290-65942309 Msa0265580:intron 35.0%
CCATCTATCATATCCCAAAT+AGG + chr2_2:65942306-65942325 None:intergenic 35.0%
! CCTATTTGGGATATGATAGA+TGG - chr2_2:65942303-65942322 Msa0265580:intron 35.0%
GCAATCACCAATATAAGCTA+AGG + chr2_2:65942381-65942400 None:intergenic 35.0%
GTAGATAAGTTAACCGATAG+TGG - chr2_2:65942524-65942543 Msa0265580:three_prime_UTR 35.0%
ACAAAATTGCAGTGAGCTAT+TGG - chr2_2:65942690-65942709 Msa0265580:intron 35.0%
ACTATCTACGACAACAATTG+AGG + chr2_2:65942883-65942902 None:intergenic 35.0%
GAAAACTCTACCACAAAGTT+TGG + chr2_2:65942984-65943003 None:intergenic 35.0%
TATTCTTCAATACTCAAGGG+TGG + chr2_2:65943496-65943515 None:intergenic 35.0%
AAATTTACATGCGGAAAGAC+GGG - chr2_2:65943592-65943611 Msa0265580:intron 35.0%
!!! GTCCTTTTTTGTTTGTTTGC+AGG - chr2_2:65944072-65944091 Msa0265580:intron 35.0%
! ATGGAAAATAGGCGTGTTTT+GGG + chr2_2:65944191-65944210 None:intergenic 35.0%
! TATGGAAAATAGGCGTGTTT+TGG + chr2_2:65944192-65944211 None:intergenic 35.0%
!!! TTTCTTATTTTCGCCCAACA+AGG + chr2_2:65944285-65944304 None:intergenic 35.0%
TATCTCATGATCCTGAAAAC+AGG - chr2_2:65944345-65944364 Msa0265580:intron 35.0%
AGATTTCAGAACATCACACT+AGG + chr2_2:65944449-65944468 None:intergenic 35.0%
! GACTTTTGTGTAGAAATGTC+CGG - chr2_2:65944515-65944534 Msa0265580:CDS 35.0%
! TGAGATTTTCATCTGTCTCA+TGG - chr2_2:65944588-65944607 Msa0265580:intron 35.0%
! ATTTTCATCTGTCTCATGGT+TGG - chr2_2:65944592-65944611 Msa0265580:intron 35.0%
TAGCAGAATTGTGGCATAAT+TGG + chr2_2:65944690-65944709 None:intergenic 35.0%
TTCTAGTGCTAGTTCAATAG+GGG - chr2_2:65944710-65944729 Msa0265580:intron 35.0%
ACACTCAGCATGATAAAAGT+TGG - chr2_2:65944741-65944760 Msa0265580:intron 35.0%
CAACCTAGTTCAATAGACAT+TGG + chr2_2:65945341-65945360 None:intergenic 35.0%
CAATGTCTATTGAACTAGGT+TGG - chr2_2:65945339-65945358 Msa0265580:intron 35.0%
TTTGACAAATGTGAATCGCT+TGG - chr2_2:65945371-65945390 Msa0265580:intron 35.0%
CTCTAATACGGCTGAAAAAT+AGG - chr2_2:65945555-65945574 Msa0265580:intron 35.0%
GAAATACAACTGGAGTGTAT+CGG - chr2_2:65945610-65945629 Msa0265580:intron 35.0%
CAAAACTTCCTTAGATGGAA+TGG - chr2_2:65945870-65945889 Msa0265580:intron 35.0%
TGTAATTCCCATTCCATCTA+AGG + chr2_2:65945881-65945900 None:intergenic 35.0%
CTGTCTAGAAGTTGAAAGAA+AGG + chr2_2:65945938-65945957 None:intergenic 35.0%
AGTGGATAAGGTAGATCTTT+GGG - chr2_2:65945969-65945988 Msa0265580:intron 35.0%
GTCTTTACCAAAGAATACCA+TGG + chr2_2:65946053-65946072 None:intergenic 35.0%
! TTCTTCTTTTACATGCTGGT+GGG - chr2_2:65946090-65946109 Msa0265580:intron 35.0%
AGTAATGATCTTCTTCAGAG+GGG - chr2_2:65946245-65946264 Msa0265580:intron 35.0%
!! TTATTTGACAGATTTCTGGC+AGG - chr2_2:65946303-65946322 Msa0265580:CDS 35.0%
!! TATTTGACAGATTTCTGGCA+GGG - chr2_2:65946304-65946323 Msa0265580:CDS 35.0%
!!! AACTCTGGTTTTATTTGGTC+CGG - chr2_2:65946332-65946351 Msa0265580:CDS 35.0%
TCCACAACTAATTCTAATGC+CGG + chr2_2:65946354-65946373 None:intergenic 35.0%
ATCAGACACAACAGAAGTTT+CGG + chr2_2:65946410-65946429 None:intergenic 35.0%
!!! ATATCTCAATTTTGGGACCA+TGG - chr2_2:65946438-65946457 Msa0265580:intron 35.0%
TTGTGTTCGAATCTATGATG+AGG - chr2_2:65946491-65946510 Msa0265580:CDS 35.0%
TCATGCTAAAATCGATCTTG+TGG - chr2_2:65946592-65946611 Msa0265580:CDS 35.0%
! TCCCATGAAGCTTTTACTAC+TGG + chr2_2:65942086-65942105 None:intergenic 40.0%
!! ATTTTGCCTATAGTGGGAAG+TGG + chr2_2:65942251-65942270 None:intergenic 40.0%
TTAACGACTTTAGGTGGAGT+TGG + chr2_2:65942332-65942351 None:intergenic 40.0%
GAACGAGGTTTAACGACTTT+AGG + chr2_2:65942341-65942360 None:intergenic 40.0%
GCAGCATTAAAAACAGAACG+AGG + chr2_2:65942356-65942375 None:intergenic 40.0%
GCTGCTACCTTAGCTTATAT+TGG - chr2_2:65942371-65942390 Msa0265580:three_prime_UTR 40.0%
ACCAAACAAAGGTTCTGTTG+CGG - chr2_2:65942460-65942479 Msa0265580:three_prime_UTR 40.0%
!! TCTTCTGGCTTATCCACTAT+CGG + chr2_2:65942540-65942559 None:intergenic 40.0%
!! TTGTTACTCTCTGAGACTTC+AGG - chr2_2:65942771-65942790 Msa0265580:intron 40.0%
TAGTTTCTCTCACCTTGGTT+GGG - chr2_2:65943021-65943040 Msa0265580:intron 40.0%
AGAATACAATGACCGTGTGA+TGG - chr2_2:65943510-65943529 Msa0265580:intron 40.0%
AGACTCATGTCACCCTAATT+GGG - chr2_2:65943751-65943770 Msa0265580:CDS 40.0%
TGTCACCCTAATTGGGATTT+AGG - chr2_2:65943758-65943777 Msa0265580:CDS 40.0%
AGGGGAAAAAGACATCATTC+AGG - chr2_2:65943942-65943961 Msa0265580:intron 40.0%
GGGGAAAAAGACATCATTCA+GGG - chr2_2:65943943-65943962 Msa0265580:intron 40.0%
! TGGAAAATAGGCGTGTTTTG+GGG + chr2_2:65944190-65944209 None:intergenic 40.0%
CATGATCCTGAAAACAGGAT+TGG - chr2_2:65944350-65944369 Msa0265580:intron 40.0%
! AGAACACCAATCCTGTTTTC+AGG + chr2_2:65944359-65944378 None:intergenic 40.0%
!! TGGTGTTCTGAAATCTGTGT+TGG - chr2_2:65944370-65944389 Msa0265580:intron 40.0%
!! GGTGTTCTGAAATCTGTGTT+GGG - chr2_2:65944371-65944390 Msa0265580:intron 40.0%
!! GTGTTCTGAAATCTGTGTTG+GGG - chr2_2:65944372-65944391 Msa0265580:intron 40.0%
AGAACATCACACTAGGTTTC+AGG + chr2_2:65944442-65944461 None:intergenic 40.0%
TAGACGAAACCAATAAGCAG+CGG - chr2_2:65944629-65944648 Msa0265580:intron 40.0%
TTCAAAACTCCGCTGCTTAT+TGG + chr2_2:65944641-65944660 None:intergenic 40.0%
GCACTAGAATAGCAGAATTG+TGG + chr2_2:65944699-65944718 None:intergenic 40.0%
ATTTCAGGGATGTTCTTCGA+TGG - chr2_2:65944820-65944839 Msa0265580:intron 40.0%
TTTCAGGGATGTTCTTCGAT+GGG - chr2_2:65944821-65944840 Msa0265580:intron 40.0%
GATGAGAAACCGAAGTTTGA+AGG + chr2_2:65944940-65944959 None:intergenic 40.0%
GTTGCACAGTTAGCCATTAA+CGG - chr2_2:65945146-65945165 Msa0265580:CDS 40.0%
AGACATTGGCGTTAGAAAAC+AGG + chr2_2:65945327-65945346 None:intergenic 40.0%
ACGCCAATGTCTATTGAACT+AGG - chr2_2:65945335-65945354 Msa0265580:intron 40.0%
CTCGTCAATGCCTTTGAATT+TGG - chr2_2:65945428-65945447 Msa0265580:intron 40.0%
GTCAATGCCTTTGAATTTGG+AGG - chr2_2:65945431-65945450 Msa0265580:intron 40.0%
GTTTCGATCAAAGTTCGACT+GGG + chr2_2:65945532-65945551 None:intergenic 40.0%
AGTTTCGATCAAAGTTCGAC+TGG + chr2_2:65945533-65945552 None:intergenic 40.0%
TTACATTACATGGTAGGGCA+AGG - chr2_2:65945731-65945750 Msa0265580:intron 40.0%
GAATACTCAGTAGTCAGTTC+TGG - chr2_2:65945818-65945837 Msa0265580:intron 40.0%
CAGTGGATAAGGTAGATCTT+TGG - chr2_2:65945968-65945987 Msa0265580:intron 40.0%
ATCTTTGGGTATTCTTCTCC+TGG - chr2_2:65945983-65946002 Msa0265580:intron 40.0%
GTTCGATCCATGGTATTCTT+TGG - chr2_2:65946043-65946062 Msa0265580:intron 40.0%
! TGGCTTCTTCTTTTACATGC+TGG - chr2_2:65946086-65946105 Msa0265580:intron 40.0%
! CTTCTTCTTTTACATGCTGG+TGG - chr2_2:65946089-65946108 Msa0265580:intron 40.0%
CACATACTTTACCATGCAAG+AGG - chr2_2:65946146-65946165 Msa0265580:intron 40.0%
TGTGTTGTGTACAACGGTTA+TGG - chr2_2:65946203-65946222 Msa0265580:intron 40.0%
GTGTTGTGTACAACGGTTAT+GGG - chr2_2:65946204-65946223 Msa0265580:intron 40.0%
AAGACAGTTCAGTGAAGCTT+TGG - chr2_2:65946280-65946299 Msa0265580:CDS 40.0%
TCCGGCATTAGAATTAGTTG+TGG - chr2_2:65946350-65946369 Msa0265580:CDS 40.0%
!! TAGGAGCGTTGCGGTTATAA+GGG + chr2_2:65942124-65942143 None:intergenic 45.0%
!!! TGAGTTTTCTAGGAGCGTTG+CGG + chr2_2:65942133-65942152 None:intergenic 45.0%
! GGTGGTTGAGTGAGTTTTCT+AGG + chr2_2:65942143-65942162 None:intergenic 45.0%
! AGAGGAGGAGATTGTGGTTT+TGG + chr2_2:65942164-65942183 None:intergenic 45.0%
CGAGGTTTAACGACTTTAGG+TGG + chr2_2:65942338-65942357 None:intergenic 45.0%
TCCGCAACAGAACCTTTGTT+TGG + chr2_2:65942464-65942483 None:intergenic 45.0%
AGTAGAGGAAGGAACCCTAT+TGG - chr2_2:65942638-65942657 Msa0265580:three_prime_UTR 45.0%
GTCTGGATGTACTGCCAATA+GGG + chr2_2:65942655-65942674 None:intergenic 45.0%
TGTCTGGATGTACTGCCAAT+AGG + chr2_2:65942656-65942675 None:intergenic 45.0%
GTGCATGCTGCAAAAATGTC+TGG + chr2_2:65942672-65942691 None:intergenic 45.0%
CCAAGGTGAGAGAAACTACA+CGG + chr2_2:65943019-65943038 None:intergenic 45.0%
GTAGTTTCTCTCACCTTGGT+TGG - chr2_2:65943020-65943039 Msa0265580:intron 45.0%
AGTTTCTCTCACCTTGGTTG+GGG - chr2_2:65943022-65943041 Msa0265580:intron 45.0%
ATATGTTTCCACCCCAACCA+AGG + chr2_2:65943036-65943055 None:intergenic 45.0%
GGTTGGGGTGGAAACATATA+TGG - chr2_2:65943037-65943056 Msa0265580:intron 45.0%
!!! TGTCGCTTTTCGTGTGTTTG+AGG + chr2_2:65943204-65943223 None:intergenic 45.0%
ACATGCAGCTATATGCTCGT+AGG - chr2_2:65943458-65943477 Msa0265580:intron 45.0%
! GGGTGACATGAGTCTGAAAT+GGG + chr2_2:65943746-65943765 None:intergenic 45.0%
AGGGTGACATGAGTCTGAAA+TGG + chr2_2:65943747-65943766 None:intergenic 45.0%
CAGACTCATGTCACCCTAAT+TGG - chr2_2:65943750-65943769 Msa0265580:CDS 45.0%
!! GGAAAATAGGCGTGTTTTGG+GGG + chr2_2:65944189-65944208 None:intergenic 45.0%
TATAGGGAGCAGTTCAAGAG+AGG + chr2_2:65944320-65944339 None:intergenic 45.0%
TGTGTAGAAATGTCCGGAAC+TGG - chr2_2:65944521-65944540 Msa0265580:CDS 45.0%
GCGACTTAAACTACCAGTTC+CGG + chr2_2:65944537-65944556 None:intergenic 45.0%
TTCAGGGATGTTCTTCGATG+GGG - chr2_2:65944822-65944841 Msa0265580:intron 45.0%
! ACTAAGACAAAAAGGCGTGC+TGG - chr2_2:65944867-65944886 Msa0265580:intron 45.0%
CAATAGAAAGCTGCAGTGCT+GGG + chr2_2:65945485-65945504 None:intergenic 45.0%
TCAATAGAAAGCTGCAGTGC+TGG + chr2_2:65945486-65945505 None:intergenic 45.0%
AGTGTTCTGGTAGTACAAGC+TGG - chr2_2:65945676-65945695 Msa0265580:intron 45.0%
GTGTTCTGGTAGTACAAGCT+GGG - chr2_2:65945677-65945696 Msa0265580:intron 45.0%
!! ACAAGTTGGGAGTATCTGTC+TGG + chr2_2:65945710-65945729 None:intergenic 45.0%
ATTACATGGTAGGGCAAGGA+GGG - chr2_2:65945735-65945754 Msa0265580:intron 45.0%
TAGACAGATGAGCTGAACAG+TGG - chr2_2:65945951-65945970 Msa0265580:intron 45.0%
GATGAGCTGAACAGTGGATA+AGG - chr2_2:65945957-65945976 Msa0265580:intron 45.0%
!!! TTACTTGTTTTGCCTGCTCC+AGG + chr2_2:65946004-65946023 None:intergenic 45.0%
!! CTAGGAGCGTTGCGGTTATA+AGG + chr2_2:65942125-65942144 None:intergenic 50.0%
!!! GGAGGAGATTGTGGTTTTGG+TGG + chr2_2:65942161-65942180 None:intergenic 50.0%
GAAGTGAGAGGAGGAGATTG+TGG + chr2_2:65942170-65942189 None:intergenic 50.0%
AGTGGCGCGTTTGAGAAGAT+CGG + chr2_2:65942228-65942247 None:intergenic 50.0%
CCGTGTAGTTTCTCTCACCT+TGG - chr2_2:65943016-65943035 Msa0265580:intron 50.0%
AGCGAACAACTGCCATCACA+CGG + chr2_2:65943525-65943544 None:intergenic 50.0%
!!! AAATAGGCGTGTTTTGGGGG+AGG + chr2_2:65944186-65944205 None:intergenic 50.0%
CACAGTTAGCCATTAACGGC+TGG - chr2_2:65945150-65945169 Msa0265580:CDS 50.0%
CATTACATGGTAGGGCAAGG+AGG - chr2_2:65945734-65945753 Msa0265580:intron 50.0%
AGGCTTCTGATCCTCTTGCA+TGG + chr2_2:65946160-65946179 None:intergenic 50.0%
!! GAAGGTGCTGGTGAAGTGAG+AGG + chr2_2:65942182-65942201 None:intergenic 55.0%
ACCAGCACCTTCTACCCGTA+AGG - chr2_2:65942190-65942209 Msa0265580:three_prime_UTR 55.0%
! TCCTTACGGGTAGAAGGTGC+TGG + chr2_2:65942194-65942213 None:intergenic 55.0%
GCCACTCCACTTCCCACTAT+AGG - chr2_2:65942242-65942261 Msa0265580:three_prime_UTR 55.0%
! GCCTATAGTGGGAAGTGGAG+TGG + chr2_2:65942246-65942265 None:intergenic 55.0%
TTCTCTCACCTTGGTTGGGG+TGG - chr2_2:65943025-65943044 Msa0265580:intron 55.0%
GATGGCAGTTGTTCGCTGTG+AGG - chr2_2:65943528-65943547 Msa0265580:intron 55.0%
ATGTGGCAGCCAGCCGTTAA+TGG + chr2_2:65945162-65945181 None:intergenic 55.0%
GGGTATTCTTCTCCTGGAGC+AGG - chr2_2:65945989-65946008 Msa0265580:intron 55.0%
TCTGGCAGGGTTTGCAACTC+TGG - chr2_2:65946317-65946336 Msa0265580:CDS 55.0%
!! GGTGCTGGTGAAGTGAGAGG+AGG + chr2_2:65942179-65942198 None:intergenic 60.0%
!!! AGGCGTGTTTTGGGGGAGGA+GGG + chr2_2:65944182-65944201 None:intergenic 60.0%
!!! TAGGCGTGTTTTGGGGGAGG+AGG + chr2_2:65944183-65944202 None:intergenic 60.0%
! AGAAAGCTGCAGTGCTGGGC+TGG + chr2_2:65945481-65945500 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65942023 65946634 65942023 ID=Msa0265580;Name=Msa0265580
chr2_2 mRNA 65942023 65946634 65942023 ID=Msa0265580-mRNA-1;Parent=Msa0265580;Name=Msa0265580-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.85|0.75|1|0.57|0.5|8|620|234
chr2_2 exon 65942023 65942281 65942023 ID=Msa0265580-mRNA-1:exon:20831;Parent=Msa0265580-mRNA-1
chr2_2 exon 65942319 65942703 65942319 ID=Msa0265580-mRNA-1:exon:20830;Parent=Msa0265580-mRNA-1
chr2_2 exon 65943196 65943300 65943196 ID=Msa0265580-mRNA-1:exon:20829;Parent=Msa0265580-mRNA-1
chr2_2 exon 65943728 65943830 65943728 ID=Msa0265580-mRNA-1:exon:20828;Parent=Msa0265580-mRNA-1
chr2_2 exon 65944511 65944563 65944511 ID=Msa0265580-mRNA-1:exon:20827;Parent=Msa0265580-mRNA-1
chr2_2 exon 65945102 65945191 65945102 ID=Msa0265580-mRNA-1:exon:20826;Parent=Msa0265580-mRNA-1
chr2_2 exon 65946248 65946393 65946248 ID=Msa0265580-mRNA-1:exon:20825;Parent=Msa0265580-mRNA-1
chr2_2 exon 65946451 65946634 65946451 ID=Msa0265580-mRNA-1:exon:20824;Parent=Msa0265580-mRNA-1
chr2_2 CDS 65946451 65946634 65946451 ID=Msa0265580-mRNA-1:cds;Parent=Msa0265580-mRNA-1
chr2_2 CDS 65946248 65946393 65946248 ID=Msa0265580-mRNA-1:cds;Parent=Msa0265580-mRNA-1
chr2_2 CDS 65945102 65945191 65945102 ID=Msa0265580-mRNA-1:cds;Parent=Msa0265580-mRNA-1
chr2_2 CDS 65944511 65944563 65944511 ID=Msa0265580-mRNA-1:cds;Parent=Msa0265580-mRNA-1
chr2_2 CDS 65943728 65943830 65943728 ID=Msa0265580-mRNA-1:cds;Parent=Msa0265580-mRNA-1
chr2_2 CDS 65943196 65943300 65943196 ID=Msa0265580-mRNA-1:cds;Parent=Msa0265580-mRNA-1
chr2_2 CDS 65942680 65942703 65942680 ID=Msa0265580-mRNA-1:cds;Parent=Msa0265580-mRNA-1
chr2_2 three_prime_UTR 65942319 65942679 65942319 ID=Msa0265580-mRNA-1:three_prime_utr;Parent=Msa0265580-mRNA-1
chr2_2 three_prime_UTR 65942023 65942281 65942023 ID=Msa0265580-mRNA-1:three_prime_utr;Parent=Msa0265580-mRNA-1
Gene Sequence

>Msa0265580

ATGCAAGGTTTATCTTCTTCATTATCATGGTCAATAACCTTTCCTTCATCCAAATTGAAACCAGTAGTAAAAGCTTCATGGGACACACAACAAAGACTCCCTTATAACCGCAACGCTCCTAGAAAACTCACTCAACCACCAAAACCACAATCTCCTCCTCTCACTTCACCAGCACCTTCTACCCGCAAAATTGAAGAACAGCAACAACAAGAACACGATGAAACCTATTTGGGATATGATAGATGGCTTCCAACTCCACCTAAAGTCGTTAAACCTCGTTCTGTTTTTAATGCTGCTACCTTAGCTTATATTGGTGATTGCATTTATGAGCTATATGCTCGTAGGCATTTTTTATTTCCACCCTTGAGTATTGAAGAATACAATGACCGTGTGATGGCAGTTGTTCGCTGTGAGGCTCAAGATGCATTGCTTCAGAAACTTCTGAACAGTGATTTCTTATCAGATCAAGAGAGGGATGTTCTTCGATGGGGAAAGAACATTATTTCAAGCAAAACTAAGACAAAAAGGCGTGCTGGTGCAGCTGTGTATAACAGAGCGTCTTCATTAGAAACATTAGTTGGCTATCTCTATTTGACAAATGTGAATCGCTTGGAAAAACTAATGTTAGAATTGGGATTCTCAGTAGACTCGTCAATGCCTTTGAATTTGGAGGAATTAATAACAGATGAGCTGAACAGTGGATAA

Protein sequence

>Msa0265580

MQGLSSSLSWSITFPSSKLKPVVKASWDTQQRLPYNRNAPRKLTQPPKPQSPPLTSPAPSTRKIEEQQQQEHDETYLGYDRWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLNSDFLSDQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSMPLNLEELITDELNSG*