AlfalfaGEDB | Msa1400700

M. sativa cultivar zhongmu-4 / Msa1400700

KEGG: K17985
GO: GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
PFAM: PF12894.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400700	XP_024626166.1	98.448	773	10	1	1	773	1	771	0.0	1564

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400700	sp\|A2AH22\|AMRA1_MOUSE	38.537	205	110	6	18	217	8	201	8.45e-28	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400700	G7KYK1	98.448	773	10	1	1	773	1	771	0.0	1564

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1400700	-0.835861	1.311413e-56	-8.615850e-47
Msa0001460	Msa1400700	-0.801625	8.241521e-49	-8.615850e-47
Msa0003470	Msa1400700	-0.830638	2.623315e-55	-8.615850e-47
Msa0005690	Msa1400700	-0.801350	9.385904e-49	-8.615850e-47
Msa0008850	Msa1400700	-0.865148	7.288070e-65	-8.615850e-47
Msa0012460	Msa1400700	-0.839052	1.995039e-57	-8.615850e-47
Msa0012820	Msa1400700	0.801046	1.083012e-48	-8.615850e-47
Msa0017120	Msa1400700	-0.827701	1.352818e-54	-8.615850e-47
Msa0018870	Msa1400700	-0.842690	2.216687e-58	-8.615850e-47
Msa0020630	Msa1400700	-0.865340	6.339217e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400700	MtrunA17_Chr7g0262511	98.448	773	10	1	1	773	1	771	0.0	1564
Msa1400700	MtrunA17_Chr1g0183071	66.071	784	184	9	10	773	22	743	0.0	999
Msa1400700	MtrunA17_Chr4g0067151	33.333	108	65	4	73	176	85	189	5.76e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400700	AT1G04140.1	56.156	796	289	10	1	771	23	783	0.0	817
Msa1400700	AT1G04140.2	56.156	796	289	10	1	771	23	783	0.0	816
Msa1400700	AT5G43930.2	57.831	415	137	9	355	761	341	725	2.34e-142	436
Msa1400700	AT5G43930.2	62.057	282	76	4	2	261	27	299	1.06e-108	348
Msa1400700	AT5G43930.3	57.831	415	137	9	355	761	341	725	2.34e-142	436
Msa1400700	AT5G43930.3	62.057	282	76	4	2	261	27	299	1.06e-108	348
Msa1400700	AT5G43930.1	57.831	415	137	9	355	761	341	725	2.34e-142	436
Msa1400700	AT5G43930.1	62.057	282	76	4	2	261	27	299	1.06e-108	348
Msa1400700	AT5G43930.4	57.831	415	137	9	355	761	367	751	5.11e-142	436
Msa1400700	AT5G43930.4	56.818	308	76	6	2	261	27	325	2.53e-101	329

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Find 248 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATGGCGCAGCATG+AGG	0.527214	tig0022476:+19445	None:intergenic
AAAGACAAGGCGATCTCTAC+GGG	0.495978	tig0022476:-19482	Msa1400700:CDS
AAAGATATGGCGCAGCATGA+GGG	0.625734	tig0022476:+19446	None:intergenic
AAAGGAAGTCGCCCACTAAT+GGG	0.455839	tig0022476:+15130	None:intergenic
AAAGGCAATGACACATTAGG+TGG	0.662890	tig0022476:+19178	None:intergenic
AAAGGTAATTCCCATCCACT+TGG	0.528862	tig0022476:+18719	None:intergenic
AAATCATGGGGTTCATCCAG+AGG	0.629465	tig0022476:-18777	Msa1400700:CDS
AACATGTTCAGTAGTTACAA+GGG	0.635795	tig0022476:-15099	Msa1400700:three_prime_UTR
AACGAGAAGAAACAGAAGAG+AGG	0.651443	tig0022476:+21020	None:intergenic
AACGGCAATGATTTCCCCTT+TGG	0.368185	tig0022476:+19690	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATAATTAACACAAGTCGT+AGG	+	tig0022476:15039-15058	None:intergenic	30.0%
AATCATTTCTCTGTTTCCAT+CGG	-	tig0022476:15350-15369	Msa1400700:intron	30.0%
TGCATTTAGATCGAATCATT+TGG	-	tig0022476:15380-15399	Msa1400700:intron	30.0%
TTTCAAAGATGTTAGTCAAG+AGG	+	tig0022476:15799-15818	None:intergenic	30.0%
AGGTACTAAAGAACAATACT+TGG	+	tig0022476:15865-15884	None:intergenic	30.0%
ATTCCTTCTGTAAACAACAA+AGG	+	tig0022476:16198-16217	None:intergenic	30.0%
TTTATGTGCTAAATGACTAC+AGG	-	tig0022476:16245-16264	Msa1400700:intron	30.0%
TAAAGATGAAAAAACATGGG+AGG	+	tig0022476:16597-16616	None:intergenic	30.0%
TTCCAGAACACAATATAAGA+GGG	+	tig0022476:16654-16673	None:intergenic	30.0%
ATTCCAGAACACAATATAAG+AGG	+	tig0022476:16655-16674	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022476	gene	15000	21249	15000	ID=Msa1400700;Name=Msa1400700
tig0022476	mRNA	15000	21249	15000	ID=Msa1400700-mRNA-1;Parent=Msa1400700;Name=Msa1400700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=277\|1\|1\|1\|0.71\|0.73\|15\|437\|773
tig0022476	exon	15000	15368	15000	ID=Msa1400700-mRNA-1:exon:17901;Parent=Msa1400700-mRNA-1
tig0022476	exon	15654	15716	15654	ID=Msa1400700-mRNA-1:exon:17900;Parent=Msa1400700-mRNA-1
tig0022476	exon	16872	16978	16872	ID=Msa1400700-mRNA-1:exon:17899;Parent=Msa1400700-mRNA-1
tig0022476	exon	17062	17175	17062	ID=Msa1400700-mRNA-1:exon:17898;Parent=Msa1400700-mRNA-1
tig0022476	exon	17317	17430	17317	ID=Msa1400700-mRNA-1:exon:17897;Parent=Msa1400700-mRNA-1
tig0022476	exon	17787	17847	17787	ID=Msa1400700-mRNA-1:exon:17896;Parent=Msa1400700-mRNA-1
tig0022476	exon	17953	18153	17953	ID=Msa1400700-mRNA-1:exon:17895;Parent=Msa1400700-mRNA-1
tig0022476	exon	18245	19329	18245	ID=Msa1400700-mRNA-1:exon:17894;Parent=Msa1400700-mRNA-1
tig0022476	exon	19435	19563	19435	ID=Msa1400700-mRNA-1:exon:17893;Parent=Msa1400700-mRNA-1
tig0022476	exon	19675	19742	19675	ID=Msa1400700-mRNA-1:exon:17892;Parent=Msa1400700-mRNA-1
tig0022476	exon	19874	19982	19874	ID=Msa1400700-mRNA-1:exon:17891;Parent=Msa1400700-mRNA-1
tig0022476	exon	20134	20218	20134	ID=Msa1400700-mRNA-1:exon:17890;Parent=Msa1400700-mRNA-1
tig0022476	exon	20303	20419	20303	ID=Msa1400700-mRNA-1:exon:17889;Parent=Msa1400700-mRNA-1
tig0022476	exon	20501	20587	20501	ID=Msa1400700-mRNA-1:exon:17888;Parent=Msa1400700-mRNA-1
tig0022476	exon	20923	21249	20923	ID=Msa1400700-mRNA-1:exon:17887;Parent=Msa1400700-mRNA-1
tig0022476	five_prime_UTR	20973	21249	20973	ID=Msa1400700-mRNA-1:five_prime_utr;Parent=Msa1400700-mRNA-1
tig0022476	CDS	20923	20972	20923	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	20501	20587	20501	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	20303	20419	20303	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	20134	20218	20134	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	19874	19982	19874	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	19675	19742	19675	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	19435	19563	19435	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	18245	19329	18245	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	17953	18153	17953	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	17787	17847	17787	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	17317	17430	17317	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	17062	17175	17062	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	CDS	16877	16978	16877	ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476	three_prime_UTR	16872	16876	16872	ID=Msa1400700-mRNA-1:three_prime_utr;Parent=Msa1400700-mRNA-1
tig0022476	three_prime_UTR	15654	15716	15654	ID=Msa1400700-mRNA-1:three_prime_utr;Parent=Msa1400700-mRNA-1
tig0022476	three_prime_UTR	15000	15368	15000	ID=Msa1400700-mRNA-1:three_prime_utr;Parent=Msa1400700-mRNA-1

Gene Sequence

>Msa1400700

ATGACGAGAATTCATCGGAATCGTGATCGCACCGGTAATTATAACGGCAGCAATGTCTTTAATTTGCTTGCACGGAGAGAGATTTCACCGAGAACAAAACATGTAGCAAGAGATGCAAAGCGTGGCCTATTGTCATGGGTTGAGGCTGATTCACTGCGGCATTTGTCAGCCAAGTATTGTTCTTTAGTACCTGCGCCAAGGTCTACTATTGCAGCGGCGTTTAGTCCAGATGGAAAAGTTCTTGCATCCACGCATGGTGACCACACAGTAAAGATAATCGACTGTGAAACTGGACGTTGCTTAAAGGTGTTAATTGGCCATATGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCGGAGTGCATAACATCTCACCACTTCTATCGACCAATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATCATTGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTACGACAAGAAAGGCGAAGCATCCTACTCCCCAATTTTTGTGTTAAAGACAAGGCGATCTCTACGGGCTGTTCATTTTCACCCTCATGCTGCGCCATATCTTTTAACGGCCGAGGTCAACGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACGTCCATTGGTTACTTACAATATCCTCCACCTGCTGTTTTTGTCACAAATGTTCATCCTACAGAACATGTTACTTTGTCTAGTGAACCACCTAATGTGTCATTGCCTTTCTTCCTCGTGCCTCCGTATTCTGTTGATGAGTCGAGAGCAGAGTTACAGCATGCTAGTCATGACGCTGGTTCAGGTAGAATACAAATTGAGTCTTCTGCCGTGGCTCAGTTTCAAGCGGACACAAATTCAACAGAACAACATGATACTATAGTGTCTCCCATGGATACAGTCTTGGAGATTCCGACTAACTCTCAAGCTGGTACAGAATATCCCGTGCATACTGCTTTCTCTAATGGAATGGGAATTGGCATCGGCAACCTCACAATGGACGGTATGGAGACTGATGAAACCAGACCGGCTGAAGGAAGTCAACACAGAAACCCTACCGATGCAAGTTCTCTTAATGGTATGTTACATGGATTATCTAGACAAACCGCAAATCATGGGGTTCATCCAGAGGATGGTCAATTTCATCCGTTTGTTTCTTCAAGAGACCCAAGTGGATGGGAATTACCTTTTCTACAAGGATGGATGATGGGTCAAAGCCAAGCTGGTCTCCCCTCAATGCTACCTCACACGGGTGTTAGTCGTGACACTCTAGCTCCACAGATTAGTTCTAGTGTAATGGCTAATACTCTTCCCACTTCTAATGCTGATGTAGCAATGCCATCTTCTGCAATGTCTGGCAGCATTAACATACCCGGATCTTCTGTAAGATCAGGTTTACGGAGTCATTTTTCACACTCACGGACACCTGTATCTGAATCCGGAAATCTTGCTGCTTCTATTAATACCCCACATGATGGATCTGACATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCAACGTCTGTGGCTGCAGCGGCAGCTACCGAGCTGCCTTGTACCGTGAAGTTAAGGGTGTGGTCTCATGACATAAAAAATCCCTGTTCCCCACTAAATGCTGACAGATGTCGTCTAATTATACCTCATGCCGTCCTCTGCAGTGAAATGGGTGCCCACTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCTGGATTACAAACTCCAGTACATCAAGAGTCTGGTATTGCAACATCACCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTGCTTGCGTCTCGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTCCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTATTAGAGGTATATAGAGTTTCAGATATGGAACTTGTTAGGGTGCTTCCGAGTGCTGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCCGGGGGCGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCACTATGATGGTGCTCACCCGGTGAATGGGACTGGACCAAGTTACTTTCCTGAGGAGACCATCGTTGGAGTCAGTCAGTGA

Protein sequence

>Msa1400700

MTRIHRNRDRTGNYNGSNVFNLLARREISPRTKHVARDAKRGLLSWVEADSLRHLSAKYCSLVPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLIGHMRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKGEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSIGYLQYPPPAVFVTNVHPTEHVTLSSEPPNVSLPFFLVPPYSVDESRAELQHASHDAGSGRIQIESSAVAQFQADTNSTEQHDTIVSPMDTVLEIPTNSQAGTEYPVHTAFSNGMGIGIGNLTMDGMETDETRPAEGSQHRNPTDASSLNGMLHGLSRQTANHGVHPEDGQFHPFVSSRDPSGWELPFLQGWMMGQSQAGLPSMLPHTGVSRDTLAPQISSSVMANTLPTSNADVAMPSSAMSGSINIPGSSVRSGLRSHFSHSRTPVSESGNLAASINTPHDGSDIQTIMSRIQSELATSVAAAAATELPCTVKLRVWSHDIKNPCSPLNADRCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPVNGTGPSYFPEETIVGVSQ*