AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400700 MtrunA17_Chr7g0262511 98.448 773 10 1 1 773 1 771 0.0 1564
Msa1400700 MtrunA17_Chr1g0183071 66.071 784 184 9 10 773 22 743 0.0 999
Msa1400700 MtrunA17_Chr4g0067151 33.333 108 65 4 73 176 85 189 5.76e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400700 AT1G04140.1 56.156 796 289 10 1 771 23 783 0.0 817
Msa1400700 AT1G04140.2 56.156 796 289 10 1 771 23 783 0.0 816
Msa1400700 AT5G43930.2 57.831 415 137 9 355 761 341 725 2.34e-142 436
Msa1400700 AT5G43930.2 62.057 282 76 4 2 261 27 299 1.06e-108 348
Msa1400700 AT5G43930.3 57.831 415 137 9 355 761 341 725 2.34e-142 436
Msa1400700 AT5G43930.3 62.057 282 76 4 2 261 27 299 1.06e-108 348
Msa1400700 AT5G43930.1 57.831 415 137 9 355 761 341 725 2.34e-142 436
Msa1400700 AT5G43930.1 62.057 282 76 4 2 261 27 299 1.06e-108 348
Msa1400700 AT5G43930.4 57.831 415 137 9 355 761 367 751 5.11e-142 436
Msa1400700 AT5G43930.4 56.818 308 76 6 2 261 27 325 2.53e-101 329
Msa1400700 AT3G49660.1 35.780 109 63 4 72 176 77 182 1.36e-13 73.2

Find 248 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGAGGGGTGGGAGTAAA+AGG 0.152243 tig0022476:+15166 None:intergenic
ACCGATGCAAGTTCTCTTAA+TGG 0.210278 tig0022476:-18830 Msa1400700:CDS
ATGATCTTATAACGTAAATT+TGG 0.230467 tig0022476:-15007 Msa1400700:three_prime_UTR
TGGATCAAGAAGTTCGATTA+TGG 0.243621 tig0022476:-19914 Msa1400700:CDS
TTTCAGATATGGAACTTGTT+AGG 0.251727 tig0022476:-17143 Msa1400700:CDS
CGTTGCTTAAAGGTGTTAAT+TGG 0.263040 tig0022476:-20156 Msa1400700:CDS
TTAGAATATTCTTTAATTTC+AGG 0.268266 tig0022476:+21219 None:intergenic
CTTAAAAGCATTGTCATTGA+TGG 0.279015 tig0022476:-17351 Msa1400700:CDS
AATAGAAGCAGCAAGATTTC+CGG 0.280600 tig0022476:+18448 None:intergenic
TCATTGTCTGACTTCAATTC+AGG 0.291181 tig0022476:-17786 Msa1400700:intron
CGTGTTCGTGTTCGTGTTCA+AGG 0.309647 tig0022476:+21139 None:intergenic
TGAAACTGGACGTTGCTTAA+AGG 0.314072 tig0022476:-20166 Msa1400700:CDS
AATTAAAGAATATTCTAATA+TGG 0.322018 tig0022476:-21214 Msa1400700:five_prime_UTR
TTCTCTAATGGAATGGGAAT+TGG 0.338125 tig0022476:-18929 Msa1400700:CDS
GTGCATACTGCTTTCTCTAA+TGG 0.347834 tig0022476:-18941 Msa1400700:CDS
AAGATAATCGACTGTGAAAC+TGG 0.350714 tig0022476:-20180 Msa1400700:CDS
TGCCTTGTACCGTGAAGTTA+AGG 0.352683 tig0022476:-18331 Msa1400700:CDS
GTCAGCATTTAGTGGGGAAC+AGG 0.355958 tig0022476:+18283 None:intergenic
ACCTCGGCCGTTAAAAGATA+TGG 0.356344 tig0022476:+19433 None:intergenic
TGGGTTGGTGCTTGCGTCTC+GGG 0.360655 tig0022476:-17822 Msa1400700:CDS
GCTAGTCATGACGCTGGTTC+AGG 0.361696 tig0022476:-19103 Msa1400700:CDS
AACGGCAATGATTTCCCCTT+TGG 0.368185 tig0022476:+19690 None:intergenic
ATAACTTGGTGTGCTGATAT+TGG 0.368312 tig0022476:+17989 None:intergenic
GAAAGGAAGTCGCCCACTAA+TGG 0.369183 tig0022476:+15129 None:intergenic
ATCGAATCAGAGAGAGTAAT+AGG 0.376634 tig0022476:+21043 None:intergenic
GGTATATAGAGTTTCAGATA+TGG 0.377588 tig0022476:-17154 Msa1400700:CDS
CTTCTGTAAGATCAGGTTTA+CGG 0.380768 tig0022476:-18508 Msa1400700:CDS
GTTTGCACTTTGCAGTGAAA+TGG 0.384877 tig0022476:-18146 Msa1400700:intron
GGATCAAGAAGTTCGATTAT+GGG 0.386752 tig0022476:-19913 Msa1400700:CDS
GAAATCATTGCCGTTGCATC+AGG 0.388142 tig0022476:-19682 Msa1400700:CDS
TGTTTAAATACCATGACAAT+AGG 0.388209 tig0022476:+20490 None:intergenic
AAGGAGGAAAGAGGAGGGGT+GGG 0.394676 tig0022476:+15157 None:intergenic
ACCTATATATACAGTATTAG+AGG 0.394703 tig0022476:-17316 Msa1400700:intron
TTGACTTCCTTCAGCCGGTC+TGG 0.395921 tig0022476:+18865 None:intergenic
CCACCCAAGGCGTCCTCATA+TGG 0.404101 tig0022476:+20133 None:intergenic
TCCTCCTTCATGCCCATTAG+TGG 0.404318 tig0022476:-15142 Msa1400700:three_prime_UTR
ACCTGATCTTACAGAAGATC+CGG 0.404650 tig0022476:+18514 None:intergenic
TTGGGTTGGTGCTTGCGTCT+CGG 0.413309 tig0022476:-17823 Msa1400700:CDS
AGATTTCCGGATTCAGATAC+AGG 0.416922 tig0022476:+18461 None:intergenic
TAGAATATTCTTTAATTTCA+GGG 0.418047 tig0022476:+21220 None:intergenic
TTACCTGCCGTTATAATTAC+CGG 0.420052 tig0022476:+20919 None:intergenic
TTCAGATATGGAACTTGTTA+GGG 0.425236 tig0022476:-17142 Msa1400700:CDS
CTCCCACTAGCAAGTATTTG+TGG 0.430838 tig0022476:+19939 None:intergenic
TCTTTGTTGCCTGTGCTCAC+TGG 0.432533 tig0022476:+15301 None:intergenic
ATCATCCATCCTTGTAGAAA+AGG 0.437053 tig0022476:+18701 None:intergenic
TCTAGACAAACCGCAAATCA+TGG 0.440551 tig0022476:-18791 Msa1400700:CDS
AGGTGTTAATTGGCCATATG+AGG 0.441688 tig0022476:-20146 Msa1400700:CDS
GAGCACAGGCAACAAAGAAC+TGG 0.446738 tig0022476:-15296 Msa1400700:three_prime_UTR
CCCTTTGGCATGAAAAGCAA+TGG 0.446896 tig0022476:+19705 None:intergenic
TCTCTTAATGGTATGTTACA+TGG 0.449131 tig0022476:-18818 Msa1400700:CDS
ACCTCTAATACTGTATATAT+AGG 0.452218 tig0022476:+17315 None:intergenic
CCCGGATCTTCTGTAAGATC+AGG 0.454736 tig0022476:-18515 Msa1400700:CDS
AAAGGAAGTCGCCCACTAAT+GGG 0.455839 tig0022476:+15130 None:intergenic
TGGATGAACCCCATGATTTG+CGG 0.456018 tig0022476:+18781 None:intergenic
CTGTGTTGACTTCCTTCAGC+CGG 0.460994 tig0022476:+18860 None:intergenic
ATGCCATCTTCTGCAATGTC+TGG 0.461031 tig0022476:-18551 Msa1400700:CDS
ATATCGTGCAGCTGTACATA+TGG 0.461205 tig0022476:-19552 Msa1400700:intron
CCAGGATCAGCTTCTATATG+AGG 0.462050 tig0022476:+18067 None:intergenic
GAAGGAGGAAAGAGGAGGGG+TGG 0.463063 tig0022476:+15156 None:intergenic
GAGGAGGGGTGGGAGTAAAA+GGG 0.464075 tig0022476:+15167 None:intergenic
TCCATAAACTAGCCCGCCCC+CGG 0.464616 tig0022476:+17068 None:intergenic
AAGAAAGGCAATGACACATT+AGG 0.465701 tig0022476:+19175 None:intergenic
CTCGACTCATCAACAGAATA+CGG 0.468779 tig0022476:+19142 None:intergenic
CCTCATATAGAAGCTGATCC+TGG 0.469762 tig0022476:-18067 Msa1400700:CDS
TACTGCTTTCTCTAATGGAA+TGG 0.472180 tig0022476:-18936 Msa1400700:CDS
TACCTCATGCCGTCCTCTGC+AGG 0.473670 tig0022476:-18244 Msa1400700:intron
GGATTCGACTCATGATGGTT+TGG 0.474467 tig0022476:+18399 None:intergenic
AATACTTGCTAGTGGGAGCT+TGG 0.475100 tig0022476:-19934 Msa1400700:CDS
CCCGTGTGAGGTAGCATTGA+GGG 0.475913 tig0022476:+18656 None:intergenic
TGAAAAGCAATGGATGCAAT+TGG 0.476696 tig0022476:+19715 None:intergenic
GATGGTGCTCACCCGGTGAA+TGG 0.478651 tig0022476:-16929 Msa1400700:CDS
CCCCTCAATGCTACCTCACA+CGG 0.479076 tig0022476:-18657 Msa1400700:CDS
ACTGCTTTCTCTAATGGAAT+GGG 0.479934 tig0022476:-18935 Msa1400700:CDS
ACCCTTAACTTCACGGTACA+AGG 0.480079 tig0022476:+18329 None:intergenic
GAAAATGATCCTTAGGGTTG+AGG 0.480101 tig0022476:-20412 Msa1400700:intron
ATACCAGACTCTTGATGTAC+TGG 0.480973 tig0022476:+18034 None:intergenic
CGGACACCTGTATCTGAATC+CGG 0.482179 tig0022476:-18467 Msa1400700:CDS
TGTACTGGAGTTTGTAATCC+AGG 0.482691 tig0022476:+18049 None:intergenic
TTTGCACTTTGCAGTGAAAT+GGG 0.485735 tig0022476:-18145 Msa1400700:intron
CTGCCAGACATTGCAGAAGA+TGG 0.486488 tig0022476:+18548 None:intergenic
CATGAAGGAGGAAAGAGGAG+GGG 0.486889 tig0022476:+15153 None:intergenic
ACAGATTAGTTCTAGTGTAA+TGG 0.489225 tig0022476:-18609 Msa1400700:CDS
TACCTTGTGGCCTGATGCAA+CGG 0.492040 tig0022476:+19672 None:intergenic
CAGACGTTGCGAGTTCTGAC+TGG 0.492854 tig0022476:+18378 None:intergenic
GCATGAAGGAGGAAAGAGGA+GGG 0.493062 tig0022476:+15152 None:intergenic
ACCTTCACCGTCGTCTCGCT+AGG 0.494262 tig0022476:-21170 Msa1400700:five_prime_UTR
AAAGACAAGGCGATCTCTAC+GGG 0.495978 tig0022476:-19482 Msa1400700:CDS
TGCCTTACGTTGCCTCCTCA+AGG 0.498284 tig0022476:+17945 None:intergenic
TACGGAGGCACGAGGAAGAA+AGG 0.502687 tig0022476:+19160 None:intergenic
CTTAGGATCCTCCACTATGA+TGG 0.508020 tig0022476:-16947 Msa1400700:CDS
CTTCAAGAGACCCAAGTGGA+TGG 0.509071 tig0022476:-18730 Msa1400700:CDS
TGGCCATATGAGGACGCCTT+GGG 0.511608 tig0022476:-20136 Msa1400700:CDS
GTCTCCCATGGATACAGTCT+TGG 0.511829 tig0022476:-19002 Msa1400700:CDS
ATGACAGAGGCAACGTCCAT+TGG 0.511917 tig0022476:-19277 Msa1400700:CDS
ATGTCTTTAATTTGCTTGCA+CGG 0.513223 tig0022476:-20563 Msa1400700:CDS
CTTGGTCCAGTCCCATTCAC+CGG 0.513341 tig0022476:+16917 None:intergenic
CTTGTTAAACAGATTTGGGT+TGG 0.513751 tig0022476:-17837 Msa1400700:intron
GATTTCAAGCTTACCACCCA+AGG 0.513791 tig0022476:+20120 None:intergenic
GATAATGTGAAGCAGATCAC+TGG 0.513915 tig0022476:+15669 None:intergenic
CCTCCTTCATGCCCATTAGT+GGG 0.515475 tig0022476:-15141 Msa1400700:three_prime_UTR
ATCTACCGCATGGTGAAAAG+TGG 0.515762 tig0022476:+18119 None:intergenic
CTAGACAAACCGCAAATCAT+GGG 0.517421 tig0022476:-18790 Msa1400700:CDS
CCACTATGATGGTGCTCACC+CGG 0.519861 tig0022476:-16936 Msa1400700:CDS
ATGGTGCTCACCCGGTGAAT+GGG 0.521215 tig0022476:-16928 Msa1400700:CDS
CAACCTCACAATGGACGGTA+TGG 0.524573 tig0022476:-18900 Msa1400700:CDS
TGACTGGATTCGACTCATGA+TGG 0.525010 tig0022476:+18394 None:intergenic
GCTCACCCGGTGAATGGGAC+TGG 0.525493 tig0022476:-16923 Msa1400700:CDS
CTTGCCTATGGTCGACGTCA+TGG 0.525700 tig0022476:-17381 Msa1400700:CDS
ACTCCAGTACATCAAGAGTC+TGG 0.526460 tig0022476:-18037 Msa1400700:CDS
AAAAGATATGGCGCAGCATG+AGG 0.527214 tig0022476:+19445 None:intergenic
GGATGAAATTGACCATCCTC+TGG 0.527771 tig0022476:+18761 None:intergenic
AAAGGTAATTCCCATCCACT+TGG 0.528862 tig0022476:+18719 None:intergenic
TTCAAGAGACCCAAGTGGAT+GGG 0.529481 tig0022476:-18729 Msa1400700:CDS
AATTGTAGGAAGGAAAGCTT+AGG 0.529620 tig0022476:-16964 Msa1400700:intron
AATCTCCAAGACTGTATCCA+TGG 0.530387 tig0022476:+18997 None:intergenic
TAAAGACAAGGCGATCTCTA+CGG 0.531041 tig0022476:-19483 Msa1400700:CDS
GACATCTGTCAGCATTTAGT+GGG 0.532977 tig0022476:+18276 None:intergenic
GTCTCCTCAGGAAAGTAACT+TGG 0.533065 tig0022476:+16899 None:intergenic
TAAGAGAACTTGCATCGGTA+GGG 0.534269 tig0022476:+18834 None:intergenic
TCCGCAGCTCATACATAACT+TGG 0.534468 tig0022476:+17975 None:intergenic
GAGCACATACTCCTTGCCTA+TGG 0.537284 tig0022476:-17393 Msa1400700:CDS
GGGTCTCTTGAAGAAACAAA+CGG 0.538257 tig0022476:+18740 None:intergenic
AGACCACACCCTTAACTTCA+CGG 0.538563 tig0022476:+18322 None:intergenic
TCTATTAATACCCCACATGA+TGG 0.539286 tig0022476:-18431 Msa1400700:CDS
CGACATCTGTCAGCATTTAG+TGG 0.540985 tig0022476:+18275 None:intergenic
TTAAGAGAACTTGCATCGGT+AGG 0.541148 tig0022476:+18833 None:intergenic
TTGGCCATATGAGGACGCCT+TGG 0.541707 tig0022476:-20137 Msa1400700:CDS
CACGAACACGAACACGAACA+CGG 0.542530 tig0022476:-21132 Msa1400700:five_prime_UTR
GCCTTGTACCGTGAAGTTAA+GGG 0.548350 tig0022476:-18330 Msa1400700:CDS
AGGAGTATGTGCTCAGATGT+AGG 0.551124 tig0022476:+17402 None:intergenic
CATTATCTTTACTACTCACG+TGG 0.551299 tig0022476:-15653 Msa1400700:intron
TGCCGTGGCTCAGTTTCAAG+CGG 0.552360 tig0022476:-19059 Msa1400700:CDS
AGAATATTCTTTAATTTCAG+GGG 0.554734 tig0022476:+21221 None:intergenic
ACCTAGCGAGACGACGGTGA+AGG 0.558637 tig0022476:+21169 None:intergenic
TGGATGTCAGATCCATCATG+TGG 0.558671 tig0022476:+18419 None:intergenic
ATTATGAGATTTCTCTGATG+AGG 0.558706 tig0022476:+15062 None:intergenic
GCCTTACGTTGCCTCCTCAA+GGG 0.559128 tig0022476:+17946 None:intergenic
TTTCCTGAGGAGACCATCGT+TGG 0.560017 tig0022476:-16890 Msa1400700:CDS
GTACCGTGAAGTTAAGGGTG+TGG 0.561704 tig0022476:-18325 Msa1400700:CDS
ACTCCAACGATGGTCTCCTC+AGG 0.564018 tig0022476:+16887 None:intergenic
TTTCTACAAGGATGGATGAT+GGG 0.564871 tig0022476:-18698 Msa1400700:CDS
TCGCCCACTAATGGGCATGA+AGG 0.565928 tig0022476:+15138 None:intergenic
TCATCATATCCAGTGAGCAC+AGG 0.569831 tig0022476:-15310 Msa1400700:three_prime_UTR
TGAACATGTTACACGTGGAA+AGG 0.575971 tig0022476:+15112 None:intergenic
CGCAACGTCTGTGGCTGCAG+CGG 0.576598 tig0022476:-18366 Msa1400700:CDS
TAACATGTTCAGTAGTTACA+AGG 0.576735 tig0022476:-15100 Msa1400700:three_prime_UTR
GGTTCAAACATGATTAGAGA+TGG 0.576886 tig0022476:-15695 Msa1400700:three_prime_UTR
ATCGGCAACCTCACAATGGA+CGG 0.577256 tig0022476:-18905 Msa1400700:CDS
GTCAGAACTCGCAACGTCTG+TGG 0.578097 tig0022476:-18375 Msa1400700:CDS
GCAGCGGCGTTTAGTCCAGA+TGG 0.579480 tig0022476:-20324 Msa1400700:CDS
GTTCTTTAGTACCTGCGCCA+AGG 0.582270 tig0022476:-20356 Msa1400700:CDS
AGAAAGTAAATATACAGAAG+TGG 0.582698 tig0022476:+19859 None:intergenic
GGCATGAAGGAGGAAAGAGG+AGG 0.582847 tig0022476:+15151 None:intergenic
AGAACCATGACGTCGACCAT+AGG 0.583821 tig0022476:+17377 None:intergenic
ATATGGCACTACGACAAGAA+AGG 0.584515 tig0022476:-19535 Msa1400700:CDS
GATGAAACCAGACCGGCTGA+AGG 0.588340 tig0022476:-18872 Msa1400700:CDS
AGGTACTAAAGAACAATACT+TGG 0.589341 tig0022476:+20365 None:intergenic
CATCGGAATCGTGATCGCAC+CGG 0.590292 tig0022476:-20938 Msa1400700:CDS
ACCCGTGTGAGGTAGCATTG+AGG 0.592212 tig0022476:+18655 None:intergenic
TGCCGTTGCATCAGGCCACA+AGG 0.593080 tig0022476:-19674 Msa1400700:intron
TTGGAGTCAGTCAGTGAGCA+AGG 0.593135 tig0022476:-16871 Msa1400700:intron
GCAAGTATTTGTGGATGCAA+TGG 0.594535 tig0022476:+19948 None:intergenic
GATCGCACCGGTAATTATAA+CGG 0.595029 tig0022476:-20926 Msa1400700:CDS
CCTGATCTTACAGAAGATCC+GGG 0.595791 tig0022476:+18515 None:intergenic
GGACGTTGCCTCTGTCATTG+AGG 0.596417 tig0022476:+19282 None:intergenic
GCATTGAGGGGAGACCAGCT+TGG 0.596774 tig0022476:+18669 None:intergenic
ATGGGCATGAAGGAGGAAAG+AGG 0.597364 tig0022476:+15148 None:intergenic
CACATATGACGAGAATTCAT+CGG 0.599243 tig0022476:-20955 Msa1400700:exon
ATGATGGGTCAAAGCCAAGC+TGG 0.599441 tig0022476:-18683 Msa1400700:CDS
TTGACCTCATCTTCAGCACT+CGG 0.599552 tig0022476:+17114 None:intergenic
GCTGATATTGGATGCCGAGT+TGG 0.600979 tig0022476:+18001 None:intergenic
AATGGAATGGGAATTGGCAT+CGG 0.601027 tig0022476:-18923 Msa1400700:CDS
ATTAGAGAAAGCAGTATGCA+CGG 0.601449 tig0022476:+18943 None:intergenic
CAAAGCGTGGCCTATTGTCA+TGG 0.602505 tig0022476:-20500 Msa1400700:intron
AGGATATTGTAAGTAACCAA+TGG 0.603398 tig0022476:+19261 None:intergenic
ATCTCCAAGACTGTATCCAT+GGG 0.604350 tig0022476:+18998 None:intergenic
GCCGCTGCAATAGTAGACCT+TGG 0.604711 tig0022476:+20339 None:intergenic
GTACCAGCTTGAGAGTTAGT+CGG 0.607254 tig0022476:+18974 None:intergenic
GCACCGGTAATTATAACGGC+AGG 0.608085 tig0022476:-20922 Msa1400700:intron
GTATTTGTGGATGCAATGGA+TGG 0.608429 tig0022476:+19952 None:intergenic
TGCTACATCAGCATTAGAAG+TGG 0.609631 tig0022476:+18574 None:intergenic
TTGGTCCAGTCCCATTCACC+GGG 0.609927 tig0022476:+16918 None:intergenic
CCCACTAATGGGCATGAAGG+AGG 0.610166 tig0022476:+15141 None:intergenic
CTTCACGGTACAAGGCAGCT+CGG 0.611116 tig0022476:+18337 None:intergenic
TGATACTATAGTGTCTCCCA+TGG 0.611348 tig0022476:-19014 Msa1400700:CDS
TCACTGACTGACTCCAACGA+TGG 0.611704 tig0022476:+16877 None:intergenic
CCATATGAGGACGCCTTGGG+TGG 0.612145 tig0022476:-20133 Msa1400700:intron
CATGGGGTTCATCCAGAGGA+TGG 0.613299 tig0022476:-18773 Msa1400700:CDS
TCAGCATTTAGTGGGGAACA+GGG 0.616022 tig0022476:+18284 None:intergenic
ACACGAACACGAACACGGAG+AGG 0.616284 tig0022476:-21127 Msa1400700:five_prime_UTR
TTAGAGAAAGCAGTATGCAC+GGG 0.618198 tig0022476:+18944 None:intergenic
CATCCACAAATACTTGCTAG+TGG 0.619566 tig0022476:-19942 Msa1400700:CDS
GCTACATCAGCATTAGAAGT+GGG 0.622520 tig0022476:+18575 None:intergenic
ACCATTAAGAGAACTTGCAT+CGG 0.624258 tig0022476:+18829 None:intergenic
GACAAAGTAACATGTTCTGT+AGG 0.624906 tig0022476:+19208 None:intergenic
AAAGATATGGCGCAGCATGA+GGG 0.625734 tig0022476:+19446 None:intergenic
ATTCCGACTAACTCTCAAGC+TGG 0.626131 tig0022476:-18977 Msa1400700:CDS
AAGGTAATTCCCATCCACTT+GGG 0.626424 tig0022476:+18720 None:intergenic
GCTTCCGAGTGCTGAAGATG+AGG 0.627162 tig0022476:-17118 Msa1400700:CDS
TCTCCATACCGTCCATTGTG+AGG 0.627723 tig0022476:+18897 None:intergenic
TCTACCGCATGGTGAAAAGT+GGG 0.629253 tig0022476:+18120 None:intergenic
AAATCATGGGGTTCATCCAG+AGG 0.629465 tig0022476:-18777 Msa1400700:CDS
ATCCACAAATACTTGCTAGT+GGG 0.630308 tig0022476:-19941 Msa1400700:CDS
AACTTTGTACAGATCATCAG+CGG 0.631432 tig0022476:+15340 None:intergenic
ACAAATTGAGTCTTCTGCCG+TGG 0.631489 tig0022476:-19074 Msa1400700:CDS
GGATGTCAGATCCATCATGT+GGG 0.633368 tig0022476:+18420 None:intergenic
AACATGTTCAGTAGTTACAA+GGG 0.635795 tig0022476:-15099 Msa1400700:three_prime_UTR
CCCTCAATGCTACCTCACAC+GGG 0.637598 tig0022476:-18656 Msa1400700:CDS
TGGACCAAGTTACTTTCCTG+AGG 0.638172 tig0022476:-16903 Msa1400700:CDS
AGGAAGCATACATGCAACAC+AGG 0.643675 tig0022476:+18087 None:intergenic
TACCTGCAGAGGACGGCATG+AGG 0.644382 tig0022476:+18242 None:intergenic
ACTTCAGAAGGTACCTGCAG+AGG 0.645206 tig0022476:+18231 None:intergenic
TGGCATCGGCAACCTCACAA+TGG 0.648272 tig0022476:-18909 Msa1400700:CDS
AACGAGAAGAAACAGAAGAG+AGG 0.651443 tig0022476:+21020 None:intergenic
CATGACGTCGACCATAGGCA+AGG 0.651625 tig0022476:+17382 None:intergenic
TCTGGCAGCATTAACATACC+CGG 0.651832 tig0022476:-18533 Msa1400700:CDS
GTATTGCAACATCACCAACT+CGG 0.653630 tig0022476:-18015 Msa1400700:CDS
GCAATAGTAGACCTTGGCGC+AGG 0.654426 tig0022476:+20345 None:intergenic
GTCCGCTTGAAACTGAGCCA+CGG 0.655549 tig0022476:+19057 None:intergenic
GCGGATATATTCCCTTGAGG+AGG 0.655726 tig0022476:-17957 Msa1400700:CDS
ACATGTTCAGTAGTTACAAG+GGG 0.657289 tig0022476:-15098 Msa1400700:three_prime_UTR
ATTATGGGATGCTAACACAT+CGG 0.657460 tig0022476:-19898 Msa1400700:CDS
CAGAAGGTACCTGCAGAGGA+CGG 0.657906 tig0022476:+18235 None:intergenic
ATTACACTAGAACTAATCTG+TGG 0.661265 tig0022476:+18611 None:intergenic
AAAGGCAATGACACATTAGG+TGG 0.662890 tig0022476:+19178 None:intergenic
GGAGACTGATGAAACCAGAC+CGG 0.663373 tig0022476:-18879 Msa1400700:CDS
GCCAAGGTCTACTATTGCAG+CGG 0.665562 tig0022476:-20340 Msa1400700:CDS
CGGGCTAGTTTATGGAACAA+AGG 0.666139 tig0022476:-17061 Msa1400700:intron
TTCAGATTCCTCAATGACAG+AGG 0.666751 tig0022476:-19290 Msa1400700:CDS
CAACAGAATACGGAGGCACG+AGG 0.668384 tig0022476:+19152 None:intergenic
GTATAATTAACACAAGTCGT+AGG 0.672001 tig0022476:+21191 None:intergenic
GCAGAGACCTAGCGAGACGA+CGG 0.673343 tig0022476:+21163 None:intergenic
GGTGAGCACCATCATAGTGG+AGG 0.674931 tig0022476:+16939 None:intergenic
TCACGACTAACACCCGTGTG+AGG 0.675774 tig0022476:+18644 None:intergenic
TAGACAAACCGCAAATCATG+GGG 0.676301 tig0022476:-18789 Msa1400700:CDS
ACTACTGAACATGTTACACG+TGG 0.679467 tig0022476:+15107 None:intergenic
AGTCGATTATCTTTACTGTG+TGG 0.679994 tig0022476:+20190 None:intergenic
CAGCATGCTAGTCATGACGC+TGG 0.681322 tig0022476:-19109 Msa1400700:CDS
ACCAAGTTATGTATGAGCTG+CGG 0.681787 tig0022476:-17976 Msa1400700:CDS
GTTTCTTCAAGAGACCCAAG+TGG 0.684840 tig0022476:-18734 Msa1400700:CDS
GATGTCAGATCCATCATGTG+GGG 0.690040 tig0022476:+18421 None:intergenic
GCTGCGGATATATTCCCTTG+AGG 0.702528 tig0022476:-17960 Msa1400700:CDS
GTAGCAAGAGATGCAAAGCG+TGG 0.707117 tig0022476:-20513 Msa1400700:CDS
TGCTGAAGATGAGGTCAATG+TGG 0.716427 tig0022476:-17109 Msa1400700:CDS
ACATCTGTCAGCATTTAGTG+GGG 0.739342 tig0022476:+18277 None:intergenic
GGGTTGAGGCTGATTCACTG+CGG 0.741601 tig0022476:-20398 Msa1400700:CDS
CATGTTCAGTAGTTACAAGG+GGG 0.743174 tig0022476:-15097 Msa1400700:three_prime_UTR
GACTCATCAACAGAATACGG+AGG 0.745008 tig0022476:+19145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAGAATATTCTAATA+TGG - tig0022476:15013-15032 Msa1400700:three_prime_UTR 10.0%
!!! TAGAATATTCTTTAATTTCA+GGG + tig0022476:15010-15029 None:intergenic 15.0%
!!! TTAGAATATTCTTTAATTTC+AGG + tig0022476:15011-15030 None:intergenic 15.0%
!! TTCAATTTAAACTAATAATG+AGG + tig0022476:15972-15991 None:intergenic 15.0%
!! TTTAGCACATAAATTAAAAT+TGG + tig0022476:16238-16257 None:intergenic 15.0%
!! ACAAAAAAAATTAGTAATAG+TGG + tig0022476:16427-16446 None:intergenic 15.0%
!! ATTATGTTTAAACTTAACAA+AGG + tig0022476:18743-18762 None:intergenic 15.0%
!! TTTCAAAAAATAATAATACG+AGG + tig0022476:19700-19719 None:intergenic 15.0%
!!! CGTATTATTATTTTTTGAAA+TGG - tig0022476:19700-19719 Msa1400700:CDS 15.0%
!! AAAATAAAAAACAAAGACTA+TGG + tig0022476:20073-20092 None:intergenic 15.0%
!!! AGAATATTCTTTAATTTCAG+GGG + tig0022476:15009-15028 None:intergenic 20.0%
!! CAAAAAAAACTAATCACAAA+GGG + tig0022476:15997-16016 None:intergenic 20.0%
!! ACAAAAAAAACTAATCACAA+AGG + tig0022476:15998-16017 None:intergenic 20.0%
!! AATAGATGCATAATAAATTC+AGG + tig0022476:16135-16154 None:intergenic 20.0%
!!! TTGTTTTTCTTGTATTGATT+GGG - tig0022476:16446-16465 Msa1400700:intron 20.0%
!! TTTCTGTTTGATGAATTTAT+TGG - tig0022476:16470-16489 Msa1400700:intron 20.0%
!! CATTAAAGATGAAAAAACAT+GGG + tig0022476:16600-16619 None:intergenic 20.0%
!! TCATTAAAGATGAAAAAACA+TGG + tig0022476:16601-16620 None:intergenic 20.0%
!! TTGTCTTTAACACAAAAATT+GGG + tig0022476:16733-16752 None:intergenic 20.0%
!! AAAAAGTCAATCATGAAATA+AGG + tig0022476:18563-18582 None:intergenic 20.0%
!! CAATGCACATAATAAATAAA+AGG + tig0022476:18615-18634 None:intergenic 20.0%
!!! ACTGCATTTTTAATTCATTA+TGG + tig0022476:18647-18666 None:intergenic 20.0%
!! AAATCATACAAAACTACAAT+AGG + tig0022476:18953-18972 None:intergenic 20.0%
!! TTAACAATTAAGCAATTCAA+GGG + tig0022476:19231-19250 None:intergenic 20.0%
!!! AGGTTATATATTGATTCTTT+TGG - tig0022476:19376-19395 Msa1400700:intron 20.0%
!!! GGTTATATATTGATTCTTTT+GGG - tig0022476:19377-19396 Msa1400700:intron 20.0%
!!! GTTATATATTGATTCTTTTG+GGG - tig0022476:19378-19397 Msa1400700:intron 20.0%
!! TAATTAGACAACTATAAAAG+TGG - tig0022476:19408-19427 Msa1400700:intron 20.0%
!! TACTAAAATTGATCTCAAAT+GGG - tig0022476:19472-19491 Msa1400700:CDS 20.0%
!! AACCATTAGAAAAGATTTAA+AGG - tig0022476:19919-19938 Msa1400700:CDS 20.0%
!! AAGATAAACCAAATATTACA+GGG + tig0022476:20128-20147 None:intergenic 20.0%
!! AATACAACAAAACTATCAAA+AGG + tig0022476:20217-20236 None:intergenic 20.0%
!! CCAATTTCTTAAATTTATCT+TGG + tig0022476:20322-20341 None:intergenic 20.0%
!! CCAAGATAAATTTAAGAAAT+TGG - tig0022476:20319-20338 Msa1400700:CDS 20.0%
!! ATCATATATGAGTGAATTTA+AGG - tig0022476:20403-20422 Msa1400700:intron 20.0%
!! GAATATCAATATAAACCTTA+TGG + tig0022476:20716-20735 None:intergenic 20.0%
!! ATGATCTTATAACGTAAATT+TGG - tig0022476:21220-21239 Msa1400700:five_prime_UTR 20.0%
! GAGAAATGATTAATCAGAAA+CGG + tig0022476:15341-15360 None:intergenic 25.0%
! TACAATCCATATAAAAACTG+AGG + tig0022476:15584-15603 None:intergenic 25.0%
! ATTCAACAAATTCAACACAA+CGG + tig0022476:15637-15656 None:intergenic 25.0%
! TGTTTAAATACCATGACAAT+AGG + tig0022476:15740-15759 None:intergenic 25.0%
!! ATCTTTGAAAATGATCCTTA+GGG - tig0022476:15809-15828 Msa1400700:intron 25.0%
!!! TTTTTGTTTGTTATGTGTAG+TGG - tig0022476:16011-16030 Msa1400700:intron 25.0%
! AGAAAGTAAATATACAGAAG+TGG + tig0022476:16371-16390 None:intergenic 25.0%
! AAAATTAGTAATAGTGGCAA+AGG + tig0022476:16421-16440 None:intergenic 25.0%
!!! GTTGTTTTTCTTGTATTGAT+TGG - tig0022476:16445-16464 Msa1400700:intron 25.0%
! TGTCTTTAACACAAAAATTG+GGG + tig0022476:16732-16751 None:intergenic 25.0%
! CTTGTCTTTAACACAAAAAT+TGG + tig0022476:16734-16753 None:intergenic 25.0%
!! CAATTTTTGTGTTAAAGACA+AGG - tig0022476:16732-16751 Msa1400700:intron 25.0%
! ATTAACATAGTGAATAGCAT+GGG + tig0022476:16851-16870 None:intergenic 25.0%
! AATTAACATAGTGAATAGCA+TGG + tig0022476:16852-16871 None:intergenic 25.0%
!! TAAGCATTTACTATTTCTTC+TGG - tig0022476:18323-18342 Msa1400700:CDS 25.0%
!!! TTACTATTTCTTCTGGTTTA+AGG - tig0022476:18330-18349 Msa1400700:CDS 25.0%
!! GATACTTGTTAAACAGATTT+GGG - tig0022476:18386-18405 Msa1400700:CDS 25.0%
! AAGTATTTGTATCTTTGACT+TGG + tig0022476:18591-18610 None:intergenic 25.0%
! TAACAACCTACAATAACAAA+GGG + tig0022476:18673-18692 None:intergenic 25.0%
! TTAACAACCTACAATAACAA+AGG + tig0022476:18674-18693 None:intergenic 25.0%
!! TTGTAAAGCAATTTTGTTCA+TGG - tig0022476:18763-18782 Msa1400700:CDS 25.0%
! ACCTATATATACAGTATTAG+AGG - tig0022476:18911-18930 Msa1400700:CDS 25.0%
! ACCTCTAATACTGTATATAT+AGG + tig0022476:18915-18934 None:intergenic 25.0%
! TTAATCTCAATTTCATGTCT+TGG - tig0022476:19032-19051 Msa1400700:CDS 25.0%
! GTTAACAATTAAGCAATTCA+AGG + tig0022476:19232-19251 None:intergenic 25.0%
!! AACTTTTTGCTTGTAATTGT+AGG - tig0022476:19249-19268 Msa1400700:CDS 25.0%
! GTACTAAAATTGATCTCAAA+TGG - tig0022476:19471-19490 Msa1400700:CDS 25.0%
! ACTAAAATTGATCTCAAATG+GGG - tig0022476:19473-19492 Msa1400700:CDS 25.0%
! TTAATGTTAGACTATGATGA+TGG - tig0022476:19497-19516 Msa1400700:CDS 25.0%
!!! AGAAGCTTTGAAGTTTAAAA+AGG - tig0022476:19589-19608 Msa1400700:intron 25.0%
! ATTTGCAATTACAAGATGTT+TGG - tig0022476:19627-19646 Msa1400700:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - tig0022476:19777-19796 Msa1400700:intron 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG + tig0022476:19912-19931 None:intergenic 25.0%
!! GACCTTTAAATCTTTTCTAA+TGG + tig0022476:19924-19943 None:intergenic 25.0%
! GTTCTATCAAAAACCATATT+TGG + tig0022476:19959-19978 None:intergenic 25.0%
! ACTATGGAAAAACAATTACA+GGG + tig0022476:20057-20076 None:intergenic 25.0%
! GAAGATAAACCAAATATTAC+AGG + tig0022476:20129-20148 None:intergenic 25.0%
!! TCAATTAGTTCTTTAATGCT+CGG - tig0022476:20147-20166 Msa1400700:CDS 25.0%
!! TATATTACCGTGATTGATTT+GGG - tig0022476:20188-20207 Msa1400700:CDS 25.0%
!! ATGTATTTGGTTCAAAATGT+CGG - tig0022476:20466-20485 Msa1400700:intron 25.0%
! AATTAGATGAAAACTTTGTG+AGG + tig0022476:20509-20528 None:intergenic 25.0%
!! CAAAGTTTTCATCTAATTGT+AGG - tig0022476:20511-20530 Msa1400700:CDS 25.0%
!!! TATTTTTGCATCAAATGAAG+AGG - tig0022476:20661-20680 Msa1400700:intron 25.0%
!!! TTGACTTGGTTAAAAAATCA+AGG + tig0022476:20744-20763 None:intergenic 25.0%
! ATTTACTTAATTGGTTGACT+TGG + tig0022476:20758-20777 None:intergenic 25.0%
!!! GGTTTTTCGATTTACTTAAT+TGG + tig0022476:20767-20786 None:intergenic 25.0%
!!! AAGATCCATTTTAAAATCAC+TGG + tig0022476:20849-20868 None:intergenic 25.0%
!! AACACAAACATTTTTACAAC+AGG + tig0022476:21040-21059 None:intergenic 25.0%
GTATAATTAACACAAGTCGT+AGG + tig0022476:15039-15058 None:intergenic 30.0%
AATCATTTCTCTGTTTCCAT+CGG - tig0022476:15350-15369 Msa1400700:intron 30.0%
TGCATTTAGATCGAATCATT+TGG - tig0022476:15380-15399 Msa1400700:intron 30.0%
! AGTTTGCCTCAGTTTTTATA+TGG - tig0022476:15575-15594 Msa1400700:intron 30.0%
!! ATGTCTTTAATTTGCTTGCA+CGG - tig0022476:15664-15683 Msa1400700:three_prime_UTR 30.0%
TTTCAAAGATGTTAGTCAAG+AGG + tig0022476:15799-15818 None:intergenic 30.0%
! CATCTTTGAAAATGATCCTT+AGG - tig0022476:15808-15827 Msa1400700:intron 30.0%
AGGTACTAAAGAACAATACT+TGG + tig0022476:15865-15884 None:intergenic 30.0%
ATTCCTTCTGTAAACAACAA+AGG + tig0022476:16198-16217 None:intergenic 30.0%
TTTATGTGCTAAATGACTAC+AGG - tig0022476:16245-16264 Msa1400700:intron 30.0%
TAAAGATGAAAAAACATGGG+AGG + tig0022476:16597-16616 None:intergenic 30.0%
TTCCAGAACACAATATAAGA+GGG + tig0022476:16654-16673 None:intergenic 30.0%
ATTCCAGAACACAATATAAG+AGG + tig0022476:16655-16674 None:intergenic 30.0%
AGGATATTGTAAGTAACCAA+TGG + tig0022476:16969-16988 None:intergenic 30.0%
TCTCTTAATGGTATGTTACA+TGG - tig0022476:17409-17428 Msa1400700:CDS 30.0%
! AATTACCTTTTCTACAAGGA+TGG - tig0022476:17521-17540 Msa1400700:intron 30.0%
ATTACACTAGAACTAATCTG+TGG + tig0022476:17619-17638 None:intergenic 30.0%
!! ACAGATTAGTTCTAGTGTAA+TGG - tig0022476:17618-17637 Msa1400700:intron 30.0%
ATGAAAAACGTAACTTCAGA+AGG + tig0022476:18011-18030 None:intergenic 30.0%
! CGATACTTGTTAAACAGATT+TGG - tig0022476:18385-18404 Msa1400700:CDS 30.0%
TGAAGAAGAAAAAGAAGGTA+CGG + tig0022476:18537-18556 None:intergenic 30.0%
GGATATGAAGAAGAAAAAGA+AGG + tig0022476:18542-18561 None:intergenic 30.0%
!! CTTAAAAGCATTGTCATTGA+TGG - tig0022476:18876-18895 Msa1400700:CDS 30.0%
CATACAAAACTACAATAGGT+AGG + tig0022476:18949-18968 None:intergenic 30.0%
!! TGGAATTTGCTTTGTGTTTT+AGG - tig0022476:19052-19071 Msa1400700:CDS 30.0%
GGTATATAGAGTTTCAGATA+TGG - tig0022476:19073-19092 Msa1400700:CDS 30.0%
! TTTCAGATATGGAACTTGTT+AGG - tig0022476:19084-19103 Msa1400700:CDS 30.0%
!! TTCAGATATGGAACTTGTTA+GGG - tig0022476:19085-19104 Msa1400700:CDS 30.0%
! AACAAAGGTATGACTTTACT+GGG - tig0022476:19181-19200 Msa1400700:CDS 30.0%
! TTTTGCTTGTAATTGTAGGA+AGG - tig0022476:19253-19272 Msa1400700:CDS 30.0%
ACAACTATAAAAGTGGTGTT+TGG - tig0022476:19415-19434 Msa1400700:intron 30.0%
AACAATTAAAACTCGTGTTG+AGG - tig0022476:19559-19578 Msa1400700:intron 30.0%
!! TTGGTTTTCATTCTTTGCTA+TGG - tig0022476:19646-19665 Msa1400700:intron 30.0%
!! TGGTTTTCATTCTTTGCTAT+GGG - tig0022476:19647-19666 Msa1400700:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + tig0022476:19773-19792 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + tig0022476:19843-19862 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - tig0022476:19844-19863 Msa1400700:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + tig0022476:19902-19921 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - tig0022476:19963-19982 Msa1400700:CDS 30.0%
GACTATGGAAAAACAATTAC+AGG + tig0022476:20058-20077 None:intergenic 30.0%
!! GTTTTAGTCCCTGTAATATT+TGG - tig0022476:20117-20136 Msa1400700:intron 30.0%
GTATATTACCGTGATTGATT+TGG - tig0022476:20187-20206 Msa1400700:CDS 30.0%
AGTGAATTTAAGGATCACAT+TGG - tig0022476:20413-20432 Msa1400700:intron 30.0%
! TGTATTTGGTTCAAAATGTC+GGG - tig0022476:20467-20486 Msa1400700:intron 30.0%
GTAGAAAAAGCAAGACATAA+AGG + tig0022476:20622-20641 None:intergenic 30.0%
!! AACTGCCAGTGATTTTAAAA+TGG - tig0022476:20841-20860 Msa1400700:intron 30.0%
TAACATGTTCAGTAGTTACA+AGG - tig0022476:21127-21146 Msa1400700:five_prime_UTR 30.0%
AACATGTTCAGTAGTTACAA+GGG - tig0022476:21128-21147 Msa1400700:five_prime_UTR 30.0%
ATTATGAGATTTCTCTGATG+AGG + tig0022476:21168-21187 None:intergenic 30.0%
ATCGAATCAGAGAGAGTAAT+AGG + tig0022476:15187-15206 None:intergenic 35.0%
CACATATGACGAGAATTCAT+CGG - tig0022476:15272-15291 Msa1400700:three_prime_UTR 35.0%
TTACCTGCCGTTATAATTAC+CGG + tig0022476:15311-15330 None:intergenic 35.0%
CTAATTTGAGCTGATCCTAA+TGG + tig0022476:15502-15521 None:intergenic 35.0%
!! CTTGCTACATGTTTTGTTCT+CGG + tig0022476:15702-15721 None:intergenic 35.0%
AGTCGATTATCTTTACTGTG+TGG + tig0022476:16040-16059 None:intergenic 35.0%
AAGATAATCGACTGTGAAAC+TGG - tig0022476:16047-16066 Msa1400700:intron 35.0%
!! CGTTGCTTAAAGGTGTTAAT+TGG - tig0022476:16071-16090 Msa1400700:intron 35.0%
!! TTGCCTTTGTTGTTTACAGA+AGG - tig0022476:16192-16211 Msa1400700:intron 35.0%
! ATCCACAAATACTTGCTAGT+GGG - tig0022476:16286-16305 Msa1400700:intron 35.0%
TGGATCAAGAAGTTCGATTA+TGG - tig0022476:16313-16332 Msa1400700:intron 35.0%
GGATCAAGAAGTTCGATTAT+GGG - tig0022476:16314-16333 Msa1400700:intron 35.0%
ATTATGGGATGCTAACACAT+CGG - tig0022476:16329-16348 Msa1400700:intron 35.0%
TGAAAAGCAATGGATGCAAT+TGG + tig0022476:16515-16534 None:intergenic 35.0%
TCAGAAAAACTACTACCTTG+TGG + tig0022476:16571-16590 None:intergenic 35.0%
TACCCTCTTATATTGTGTTC+TGG - tig0022476:16649-16668 Msa1400700:intron 35.0%
TAACACAAAAATTGGGGAGT+AGG + tig0022476:16726-16745 None:intergenic 35.0%
AAACACAAGTTCATTCACCT+CGG + tig0022476:16813-16832 None:intergenic 35.0%
! GGTGAATGAACTTGTGTTTT+TGG - tig0022476:16814-16833 Msa1400700:intron 35.0%
ACATTTGTGACAAAAACAGC+AGG + tig0022476:16995-17014 None:intergenic 35.0%
GACAAAGTAACATGTTCTGT+AGG + tig0022476:17022-17041 None:intergenic 35.0%
AAGAAAGGCAATGACACATT+AGG + tig0022476:17055-17074 None:intergenic 35.0%
ATTAGAGAAAGCAGTATGCA+CGG + tig0022476:17287-17306 None:intergenic 35.0%
TACTGCTTTCTCTAATGGAA+TGG - tig0022476:17291-17310 Msa1400700:intron 35.0%
ACTGCTTTCTCTAATGGAAT+GGG - tig0022476:17292-17311 Msa1400700:intron 35.0%
TTCTCTAATGGAATGGGAAT+TGG - tig0022476:17298-17317 Msa1400700:intron 35.0%
ACCATTAAGAGAACTTGCAT+CGG + tig0022476:17401-17420 None:intergenic 35.0%
! TGGGAATTACCTTTTCTACA+AGG - tig0022476:17517-17536 Msa1400700:intron 35.0%
ATCATCCATCCTTGTAGAAA+AGG + tig0022476:17529-17548 None:intergenic 35.0%
! TTTTCTACAAGGATGGATGA+TGG - tig0022476:17528-17547 Msa1400700:intron 35.0%
TTTCTACAAGGATGGATGAT+GGG - tig0022476:17529-17548 Msa1400700:intron 35.0%
CTTCTGTAAGATCAGGTTTA+CGG - tig0022476:17719-17738 Msa1400700:intron 35.0%
AATAGAAGCAGCAAGATTTC+CGG + tig0022476:17782-17801 None:intergenic 35.0%
TCTATTAATACCCCACATGA+TGG - tig0022476:17796-17815 Msa1400700:CDS 35.0%
TTTGCACTTTGCAGTGAAAT+GGG - tig0022476:18082-18101 Msa1400700:CDS 35.0%
!! ATAACTTGGTGTGCTGATAT+TGG + tig0022476:18241-18260 None:intergenic 35.0%
CTTGTTAAACAGATTTGGGT+TGG - tig0022476:18390-18409 Msa1400700:CDS 35.0%
TCATTGTCTGACTTCAATTC+AGG - tig0022476:18441-18460 Msa1400700:CDS 35.0%
!! AGTGAACCCTTTGTTATTGT+AGG - tig0022476:18664-18683 Msa1400700:CDS 35.0%
! GAACAAAGGTATGACTTTAC+TGG - tig0022476:19180-19199 Msa1400700:CDS 35.0%
! ACAAAGGTATGACTTTACTG+GGG - tig0022476:19182-19201 Msa1400700:CDS 35.0%
AATTGTAGGAAGGAAAGCTT+AGG - tig0022476:19263-19282 Msa1400700:CDS 35.0%
!! ATGTTAGACTATGATGATGG+TGG - tig0022476:19500-19519 Msa1400700:CDS 35.0%
!! TGGTGTCATTCACAATTACA+GGG + tig0022476:19727-19746 None:intergenic 35.0%
!! ATGGTGTCATTCACAATTAC+AGG + tig0022476:19728-19747 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG - tig0022476:19766-19785 Msa1400700:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - tig0022476:19786-19805 Msa1400700:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - tig0022476:19791-19810 Msa1400700:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - tig0022476:19847-19866 Msa1400700:intron 35.0%
AGATTTAAAGGTCAATGAGC+TGG - tig0022476:19931-19950 Msa1400700:CDS 35.0%
! TTGGTTGTTGTTGTTGTTGT+TGG - tig0022476:20030-20049 Msa1400700:intron 35.0%
AAGGATTCCCAAATCAATCA+CGG + tig0022476:20198-20217 None:intergenic 35.0%
GGTTCAAACATGATTAGAGA+TGG - tig0022476:20532-20551 Msa1400700:CDS 35.0%
CATTATCTTTACTACTCACG+TGG - tig0022476:20574-20593 Msa1400700:intron 35.0%
GAAAAAGCAAGACATAAAGG+AGG + tig0022476:20619-20638 None:intergenic 35.0%
!!! TGCTTTTTCTACACAAGTAG+TGG - tig0022476:20630-20649 Msa1400700:intron 35.0%
! TTTTGCATCAAATGAAGAGG+TGG - tig0022476:20664-20683 Msa1400700:intron 35.0%
TCAAGAAGTTGAGCTTTCAT+TGG + tig0022476:20788-20807 None:intergenic 35.0%
AATGAAAGCTCAACTTCTTG+AGG - tig0022476:20787-20806 Msa1400700:intron 35.0%
AACTTTGTACAGATCATCAG+CGG + tig0022476:20890-20909 None:intergenic 35.0%
ACATGTTCAGTAGTTACAAG+GGG - tig0022476:21129-21148 Msa1400700:five_prime_UTR 35.0%
! TCTTTTTCTCTCTCTGTCTC+TGG + tig0022476:15147-15166 None:intergenic 40.0%
AACGAGAAGAAACAGAAGAG+AGG + tig0022476:15210-15229 None:intergenic 40.0%
! GATCGCACCGGTAATTATAA+CGG - tig0022476:15301-15320 Msa1400700:three_prime_UTR 40.0%
CTAAATGCAACTGAAACCGA+TGG + tig0022476:15369-15388 None:intergenic 40.0%
GTGCTCGTTTATTGACCATT+AGG - tig0022476:15484-15503 Msa1400700:intron 40.0%
GAAAATGATCCTTAGGGTTG+AGG - tig0022476:15815-15834 Msa1400700:intron 40.0%
! GATGCAAGAACTTTTCCATC+TGG + tig0022476:15921-15940 None:intergenic 40.0%
ACTAATTGCAACTTACTGCG+TGG + tig0022476:15943-15962 None:intergenic 40.0%
TGAAACTGGACGTTGCTTAA+AGG - tig0022476:16061-16080 Msa1400700:intron 40.0%
AGGTGTTAATTGGCCATATG+AGG - tig0022476:16081-16100 Msa1400700:intron 40.0%
GTGCTAAATGACTACAGGTT+AGG - tig0022476:16250-16269 Msa1400700:intron 40.0%
GTATTTGTGGATGCAATGGA+TGG + tig0022476:16278-16297 None:intergenic 40.0%
GCAAGTATTTGTGGATGCAA+TGG + tig0022476:16282-16301 None:intergenic 40.0%
! CATCCACAAATACTTGCTAG+TGG - tig0022476:16285-16304 Msa1400700:intron 40.0%
!! TCCATTGCTTTTCATGCCAA+AGG - tig0022476:16521-16540 Msa1400700:intron 40.0%
!! CCATTGCTTTTCATGCCAAA+GGG - tig0022476:16522-16541 Msa1400700:intron 40.0%
!! CATTGCTTTTCATGCCAAAG+GGG - tig0022476:16523-16542 Msa1400700:intron 40.0%
ATATCGTGCAGCTGTACATA+TGG - tig0022476:16675-16694 Msa1400700:intron 40.0%
ATATGGCACTACGACAAGAA+AGG - tig0022476:16692-16711 Msa1400700:intron 40.0%
TAAAGACAAGGCGATCTCTA+CGG - tig0022476:16744-16763 Msa1400700:intron 40.0%
! TGCTGCGCCATATCTTTTAA+CGG - tig0022476:16787-16806 Msa1400700:intron 40.0%
TTCAGATTCCTCAATGACAG+AGG - tig0022476:16937-16956 Msa1400700:CDS 40.0%
TTTGTGACAAAAACAGCAGG+TGG + tig0022476:16992-17011 None:intergenic 40.0%
AAAGGCAATGACACATTAGG+TGG + tig0022476:17052-17071 None:intergenic 40.0%
CTCGACTCATCAACAGAATA+CGG + tig0022476:17088-17107 None:intergenic 40.0%
TGATACTATAGTGTCTCCCA+TGG - tig0022476:17213-17232 Msa1400700:intron 40.0%
ATCTCCAAGACTGTATCCAT+GGG + tig0022476:17232-17251 None:intergenic 40.0%
AATCTCCAAGACTGTATCCA+TGG + tig0022476:17233-17252 None:intergenic 40.0%
TTAGAGAAAGCAGTATGCAC+GGG + tig0022476:17286-17305 None:intergenic 40.0%
GTGCATACTGCTTTCTCTAA+TGG - tig0022476:17286-17305 Msa1400700:intron 40.0%
AATGGAATGGGAATTGGCAT+CGG - tig0022476:17304-17323 Msa1400700:intron 40.0%
! TAAGAGAACTTGCATCGGTA+GGG + tig0022476:17396-17415 None:intergenic 40.0%
! TTAAGAGAACTTGCATCGGT+AGG + tig0022476:17397-17416 None:intergenic 40.0%
ACCGATGCAAGTTCTCTTAA+TGG - tig0022476:17397-17416 Msa1400700:CDS 40.0%
TCTAGACAAACCGCAAATCA+TGG - tig0022476:17436-17455 Msa1400700:intron 40.0%
CTAGACAAACCGCAAATCAT+GGG - tig0022476:17437-17456 Msa1400700:intron 40.0%
TAGACAAACCGCAAATCATG+GGG - tig0022476:17438-17457 Msa1400700:intron 40.0%
GGGTCTCTTGAAGAAACAAA+CGG + tig0022476:17490-17509 None:intergenic 40.0%
AAGGTAATTCCCATCCACTT+GGG + tig0022476:17510-17529 None:intergenic 40.0%
AAAGGTAATTCCCATCCACT+TGG + tig0022476:17511-17530 None:intergenic 40.0%
GCTACATCAGCATTAGAAGT+GGG + tig0022476:17655-17674 None:intergenic 40.0%
TGCTACATCAGCATTAGAAG+TGG + tig0022476:17656-17675 None:intergenic 40.0%
ACCTGATCTTACAGAAGATC+CGG + tig0022476:17716-17735 None:intergenic 40.0%
!!! GGAGTCATTTTTCACACTCA+CGG - tig0022476:17740-17759 Msa1400700:intron 40.0%
AGATTTCCGGATTCAGATAC+AGG + tig0022476:17769-17788 None:intergenic 40.0%
ACATCTGTCAGCATTTAGTG+GGG + tig0022476:17953-17972 None:intergenic 40.0%
GACATCTGTCAGCATTTAGT+GGG + tig0022476:17954-17973 None:intergenic 40.0%
TTCACTGCAAAGTGCAAACA+CGG + tig0022476:18080-18099 None:intergenic 40.0%
GTTTGCACTTTGCAGTGAAA+TGG - tig0022476:18081-18100 Msa1400700:CDS 40.0%
TGTACTGGAGTTTGTAATCC+AGG + tig0022476:18181-18200 None:intergenic 40.0%
ATACCAGACTCTTGATGTAC+TGG + tig0022476:18196-18215 None:intergenic 40.0%
GTATTGCAACATCACCAACT+CGG - tig0022476:18212-18231 Msa1400700:intron 40.0%
ACCAAGTTATGTATGAGCTG+CGG - tig0022476:18251-18270 Msa1400700:CDS 40.0%
! CAAAGGTATGACTTTACTGG+GGG - tig0022476:19183-19202 Msa1400700:CDS 40.0%
! AAAGGTATGACTTTACTGGG+GGG - tig0022476:19184-19203 Msa1400700:CDS 40.0%
!!! TGGTGTTTGGTTTTGATGTC+TGG - tig0022476:19428-19447 Msa1400700:intron 40.0%
!!! GGTGTTTGGTTTTGATGTCT+GGG - tig0022476:19429-19448 Msa1400700:intron 40.0%
!!! GTGTTTGGTTTTGATGTCTG+GGG - tig0022476:19430-19449 Msa1400700:intron 40.0%
!! TTAGACTATGATGATGGTGG+TGG - tig0022476:19503-19522 Msa1400700:CDS 40.0%
TCTTCTTACAACGGCATCTA+CGG + tig0022476:19834-19853 None:intergenic 40.0%
! TTCCTCTACCTCTTTTAACC+TGG + tig0022476:19877-19896 None:intergenic 40.0%
CAATGAGCTGGATCCAAATA+TGG - tig0022476:19943-19962 Msa1400700:CDS 40.0%
CCAAATACATACTCGCATGA+AGG + tig0022476:20456-20475 None:intergenic 40.0%
CCTTCATGCGAGTATGTATT+TGG - tig0022476:20453-20472 Msa1400700:intron 40.0%
GATAATGTGAAGCAGATCAC+TGG + tig0022476:20561-20580 None:intergenic 40.0%
TGTTGAGCTTTCTCACCATA+AGG - tig0022476:20698-20717 Msa1400700:intron 40.0%
ATCACTGGCAGTTGAAAAGA+AGG + tig0022476:20834-20853 None:intergenic 40.0%
TGAACATGTTACACGTGGAA+AGG + tig0022476:21118-21137 None:intergenic 40.0%
ACTACTGAACATGTTACACG+TGG + tig0022476:21123-21142 None:intergenic 40.0%
CATGTTCAGTAGTTACAAGG+GGG - tig0022476:21130-21149 Msa1400700:five_prime_UTR 40.0%
! TTTTCTCTCTCTGTCTCTGG+TGG + tig0022476:15144-15163 None:intergenic 45.0%
GATTTCAAGCTTACCACCCA+AGG + tig0022476:16110-16129 None:intergenic 45.0%
CTCCCACTAGCAAGTATTTG+TGG + tig0022476:16291-16310 None:intergenic 45.0%
! AATACTTGCTAGTGGGAGCT+TGG - tig0022476:16293-16312 Msa1400700:intron 45.0%
CCCTTTGGCATGAAAAGCAA+TGG + tig0022476:16525-16544 None:intergenic 45.0%
AACGGCAATGATTTCCCCTT+TGG + tig0022476:16540-16559 None:intergenic 45.0%
GAAATCATTGCCGTTGCATC+AGG - tig0022476:16545-16564 Msa1400700:intron 45.0%
AAAGACAAGGCGATCTCTAC+GGG - tig0022476:16745-16764 Msa1400700:intron 45.0%
AAAGATATGGCGCAGCATGA+GGG + tig0022476:16784-16803 None:intergenic 45.0%
AAAAGATATGGCGCAGCATG+AGG + tig0022476:16785-16804 None:intergenic 45.0%
ACCTCGGCCGTTAAAAGATA+TGG + tig0022476:16797-16816 None:intergenic 45.0%
GACTCATCAACAGAATACGG+AGG + tig0022476:17085-17104 None:intergenic 45.0%
ACAAATTGAGTCTTCTGCCG+TGG - tig0022476:17153-17172 Msa1400700:CDS 45.0%
ATTCCGACTAACTCTCAAGC+TGG - tig0022476:17250-17269 Msa1400700:intron 45.0%
GTACCAGCTTGAGAGTTAGT+CGG + tig0022476:17256-17275 None:intergenic 45.0%
TGGATGAACCCCATGATTTG+CGG + tig0022476:17449-17468 None:intergenic 45.0%
AAATCATGGGGTTCATCCAG+AGG - tig0022476:17450-17469 Msa1400700:intron 45.0%
GGATGAAATTGACCATCCTC+TGG + tig0022476:17469-17488 None:intergenic 45.0%
GTTTCTTCAAGAGACCCAAG+TGG - tig0022476:17493-17512 Msa1400700:intron 45.0%
TTCAAGAGACCCAAGTGGAT+GGG - tig0022476:17498-17517 Msa1400700:intron 45.0%
ATGCCATCTTCTGCAATGTC+TGG - tig0022476:17676-17695 Msa1400700:intron 45.0%
TCTGGCAGCATTAACATACC+CGG - tig0022476:17694-17713 Msa1400700:intron 45.0%
CCTGATCTTACAGAAGATCC+GGG + tig0022476:17715-17734 None:intergenic 45.0%
GATGTCAGATCCATCATGTG+GGG + tig0022476:17809-17828 None:intergenic 45.0%
GGATGTCAGATCCATCATGT+GGG + tig0022476:17810-17829 None:intergenic 45.0%
TGGATGTCAGATCCATCATG+TGG + tig0022476:17811-17830 None:intergenic 45.0%
GGATTCGACTCATGATGGTT+TGG + tig0022476:17831-17850 None:intergenic 45.0%
TGACTGGATTCGACTCATGA+TGG + tig0022476:17836-17855 None:intergenic 45.0%
TGCCTTGTACCGTGAAGTTA+AGG - tig0022476:17896-17915 Msa1400700:intron 45.0%
GCCTTGTACCGTGAAGTTAA+GGG - tig0022476:17897-17916 Msa1400700:intron 45.0%
ACCCTTAACTTCACGGTACA+AGG + tig0022476:17901-17920 None:intergenic 45.0%
AGACCACACCCTTAACTTCA+CGG + tig0022476:17908-17927 None:intergenic 45.0%
TCAGCATTTAGTGGGGAACA+GGG + tig0022476:17946-17965 None:intergenic 45.0%
CGACATCTGTCAGCATTTAG+TGG + tig0022476:17955-17974 None:intergenic 45.0%
TCTACCGCATGGTGAAAAGT+GGG + tig0022476:18110-18129 None:intergenic 45.0%
ATCTACCGCATGGTGAAAAG+TGG + tig0022476:18111-18130 None:intergenic 45.0%
GCAGCTAAAAATCTACCGCA+TGG + tig0022476:18121-18140 None:intergenic 45.0%
! AGGAAGCATACATGCAACAC+AGG + tig0022476:18143-18162 None:intergenic 45.0%
CCAGGATCAGCTTCTATATG+AGG + tig0022476:18163-18182 None:intergenic 45.0%
CCTCATATAGAAGCTGATCC+TGG - tig0022476:18160-18179 Msa1400700:intron 45.0%
ACTCCAGTACATCAAGAGTC+TGG - tig0022476:18190-18209 Msa1400700:intron 45.0%
TCCGCAGCTCATACATAACT+TGG + tig0022476:18255-18274 None:intergenic 45.0%
! AGGAGTATGTGCTCAGATGT+AGG + tig0022476:18828-18847 None:intergenic 45.0%
TTGACCTCATCTTCAGCACT+CGG + tig0022476:19116-19135 None:intergenic 45.0%
TGCTGAAGATGAGGTCAATG+TGG - tig0022476:19118-19137 Msa1400700:CDS 45.0%
! GCATGCTTTCATCCTTTTCC+CGG - tig0022476:19140-19159 Msa1400700:CDS 45.0%
! CATGCTTTCATCCTTTTCCC+GGG - tig0022476:19141-19160 Msa1400700:CDS 45.0%
! ATGCTTTCATCCTTTTCCCG+GGG - tig0022476:19142-19161 Msa1400700:CDS 45.0%
!! CGGGCTAGTTTATGGAACAA+AGG - tig0022476:19166-19185 Msa1400700:CDS 45.0%
CTTAGGATCCTCCACTATGA+TGG - tig0022476:19280-19299 Msa1400700:CDS 45.0%
! TGGACCAAGTTACTTTCCTG+AGG - tig0022476:19324-19343 Msa1400700:intron 45.0%
GTCTCCTCAGGAAAGTAACT+TGG + tig0022476:19331-19350 None:intergenic 45.0%
TGACACCATTAGAGAGAGAG+TGG - tig0022476:19739-19758 Msa1400700:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG - tig0022476:19740-19759 Msa1400700:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG - tig0022476:19741-19760 Msa1400700:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + tig0022476:19833-19852 None:intergenic 45.0%
AGCCAGGTTAAAAGAGGTAG+AGG - tig0022476:19872-19891 Msa1400700:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + tig0022476:20012-20031 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + tig0022476:20013-20032 None:intergenic 45.0%
! ATATAGAGCGTGCTGACAGT+AGG + tig0022476:20350-20369 None:intergenic 45.0%
TCATCATATCCAGTGAGCAC+AGG - tig0022476:20917-20936 Msa1400700:intron 45.0%
AAAGGAAGTCGCCCACTAAT+GGG + tig0022476:21100-21119 None:intergenic 45.0%
!!! TTTTTTTTATAATTGAATTA+TGG - tig0022476:15414-15433 Msa1400700:intron 5.0%
!!! TTTTATTTTATTTTTCTTTT+TGG - tig0022476:16872-16891 Msa1400700:exon 5.0%
!!! AAAATTATTTTAAAAAGTAA+TGG + tig0022476:18360-18379 None:intergenic 5.0%
CGTGTTCGTGTTCGTGTTCA+AGG + tig0022476:15091-15110 None:intergenic 50.0%
CACGAACACGAACACGAACA+CGG - tig0022476:15095-15114 Msa1400700:three_prime_UTR 50.0%
! GCACCGGTAATTATAACGGC+AGG - tig0022476:15305-15324 Msa1400700:three_prime_UTR 50.0%
GTAGCAAGAGATGCAAAGCG+TGG - tig0022476:15714-15733 Msa1400700:intron 50.0%
CAAAGCGTGGCCTATTGTCA+TGG - tig0022476:15727-15746 Msa1400700:intron 50.0%
GTGAATCAGCCTCAACCCTA+AGG + tig0022476:15827-15846 None:intergenic 50.0%
GTTCTTTAGTACCTGCGCCA+AGG - tig0022476:15871-15890 Msa1400700:intron 50.0%
GCCAAGGTCTACTATTGCAG+CGG - tig0022476:15887-15906 Msa1400700:intron 50.0%
TACCTTGTGGCCTGATGCAA+CGG + tig0022476:16558-16577 None:intergenic 50.0%
! GCCATATCTTTTAACGGCCG+AGG - tig0022476:16793-16812 Msa1400700:intron 50.0%
ACATGCTTGCTTTGATGCGC+AGG - tig0022476:16898-16917 Msa1400700:CDS 50.0%
ATGACAGAGGCAACGTCCAT+TGG - tig0022476:16950-16969 Msa1400700:CDS 50.0%
GTGACAAAAACAGCAGGTGG+AGG + tig0022476:16989-17008 None:intergenic 50.0%
GTCTCCCATGGATACAGTCT+TGG - tig0022476:17225-17244 Msa1400700:intron 50.0%
ATCGGCAACCTCACAATGGA+CGG - tig0022476:17322-17341 Msa1400700:CDS 50.0%
CAACCTCACAATGGACGGTA+TGG - tig0022476:17327-17346 Msa1400700:CDS 50.0%
TCTCCATACCGTCCATTGTG+AGG + tig0022476:17333-17352 None:intergenic 50.0%
GGAGACTGATGAAACCAGAC+CGG - tig0022476:17348-17367 Msa1400700:CDS 50.0%
!! CTGTGTTGACTTCCTTCAGC+CGG + tig0022476:17370-17389 None:intergenic 50.0%
CTTCAAGAGACCCAAGTGGA+TGG - tig0022476:17497-17516 Msa1400700:intron 50.0%
!! ATGATGGGTCAAAGCCAAGC+TGG - tig0022476:17544-17563 Msa1400700:intron 50.0%
CTGCCAGACATTGCAGAAGA+TGG + tig0022476:17682-17701 None:intergenic 50.0%
CCCGGATCTTCTGTAAGATC+AGG - tig0022476:17712-17731 Msa1400700:intron 50.0%
CGGACACCTGTATCTGAATC+CGG - tig0022476:17760-17779 Msa1400700:intron 50.0%
GTACCGTGAAGTTAAGGGTG+TGG - tig0022476:17902-17921 Msa1400700:intron 50.0%
GTCAGCATTTAGTGGGGAAC+AGG + tig0022476:17947-17966 None:intergenic 50.0%
!! ACTTCAGAAGGTACCTGCAG+AGG + tig0022476:17999-18018 None:intergenic 50.0%
GCTGATATTGGATGCCGAGT+TGG + tig0022476:18229-18248 None:intergenic 50.0%
GCTGCGGATATATTCCCTTG+AGG - tig0022476:18267-18286 Msa1400700:CDS 50.0%
GCGGATATATTCCCTTGAGG+AGG - tig0022476:18270-18289 Msa1400700:CDS 50.0%
GTACGGACACAAGCAGAGAA+GGG + tig0022476:18520-18539 None:intergenic 50.0%
GAGCACATACTCCTTGCCTA+TGG - tig0022476:18834-18853 Msa1400700:CDS 50.0%
AGAACCATGACGTCGACCAT+AGG + tig0022476:18853-18872 None:intergenic 50.0%
! TGCTTTCATCCTTTTCCCGG+GGG - tig0022476:19143-19162 Msa1400700:CDS 50.0%
TTACTGGGGGGAGATCAATG+TGG - tig0022476:19196-19215 Msa1400700:CDS 50.0%
TTTCCTGAGGAGACCATCGT+TGG - tig0022476:19337-19356 Msa1400700:intron 50.0%
! TCACTGACTGACTCCAACGA+TGG + tig0022476:19353-19372 None:intergenic 50.0%
TTGGAGTCAGTCAGTGAGCA+AGG - tig0022476:19356-19375 Msa1400700:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG - tig0022476:19742-19761 Msa1400700:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + tig0022476:19747-19766 None:intergenic 50.0%
AGATCAAATGGAGGAGAGCC+AGG - tig0022476:19856-19875 Msa1400700:intron 50.0%
GAGGAGAGCCAGGTTAAAAG+AGG - tig0022476:19866-19885 Msa1400700:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + tig0022476:20008-20027 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + tig0022476:20014-20033 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - tig0022476:20011-20030 Msa1400700:intron 50.0%
TCTCAACCAAGTGACCTCTC+GGG + tig0022476:20256-20275 None:intergenic 50.0%
CTCTCAACCAAGTGACCTCT+CGG + tig0022476:20257-20276 None:intergenic 50.0%
GAGTTCTCTCTTCAACCTCG+AGG - tig0022476:20274-20293 Msa1400700:intron 50.0%
! CTCTTCAACCTCGAGGTACT+CGG - tig0022476:20281-20300 Msa1400700:intron 50.0%
! GAGGTACTCGGTTTGAGACT+CGG - tig0022476:20293-20312 Msa1400700:intron 50.0%
! AGGTACTCGGTTTGAGACTC+GGG - tig0022476:20294-20313 Msa1400700:intron 50.0%
GCAAGACATAAAGGAGGCCA+GGG + tig0022476:20613-20632 None:intergenic 50.0%
AGCAAGACATAAAGGAGGCC+AGG + tig0022476:20614-20633 None:intergenic 50.0%
TCTTTGTTGCCTGTGCTCAC+TGG + tig0022476:20929-20948 None:intergenic 50.0%
GAGCACAGGCAACAAAGAAC+TGG - tig0022476:20931-20950 Msa1400700:CDS 50.0%
CATGAAGGAGGAAAGAGGAG+GGG + tig0022476:21077-21096 None:intergenic 50.0%
GCATGAAGGAGGAAAGAGGA+GGG + tig0022476:21078-21097 None:intergenic 50.0%
ATGGGCATGAAGGAGGAAAG+AGG + tig0022476:21082-21101 None:intergenic 50.0%
TCCTCCTTCATGCCCATTAG+TGG - tig0022476:21085-21104 Msa1400700:five_prime_UTR 50.0%
CCTCCTTCATGCCCATTAGT+GGG - tig0022476:21086-21105 Msa1400700:five_prime_UTR 50.0%
GAAAGGAAGTCGCCCACTAA+TGG + tig0022476:21101-21120 None:intergenic 50.0%
ACACGAACACGAACACGGAG+AGG - tig0022476:15100-15119 Msa1400700:three_prime_UTR 55.0%
CATCGGAATCGTGATCGCAC+CGG - tig0022476:15289-15308 Msa1400700:three_prime_UTR 55.0%
! GGGTTGAGGCTGATTCACTG+CGG - tig0022476:15829-15848 Msa1400700:intron 55.0%
GCAATAGTAGACCTTGGCGC+AGG + tig0022476:15885-15904 None:intergenic 55.0%
GCCGCTGCAATAGTAGACCT+TGG + tig0022476:15891-15910 None:intergenic 55.0%
TTGGCCATATGAGGACGCCT+TGG - tig0022476:16090-16109 Msa1400700:intron 55.0%
TGGCCATATGAGGACGCCTT+GGG - tig0022476:16091-16110 Msa1400700:intron 55.0%
GGACGTTGCCTCTGTCATTG+AGG + tig0022476:16948-16967 None:intergenic 55.0%
! TACGGAGGCACGAGGAAGAA+AGG + tig0022476:17070-17089 None:intergenic 55.0%
! CAACAGAATACGGAGGCACG+AGG + tig0022476:17078-17097 None:intergenic 55.0%
CAGCATGCTAGTCATGACGC+TGG - tig0022476:17118-17137 Msa1400700:CDS 55.0%
!! GCTAGTCATGACGCTGGTTC+AGG - tig0022476:17124-17143 Msa1400700:CDS 55.0%
TGCCGTGGCTCAGTTTCAAG+CGG - tig0022476:17168-17187 Msa1400700:intron 55.0%
GTCCGCTTGAAACTGAGCCA+CGG + tig0022476:17173-17192 None:intergenic 55.0%
!! TGGCATCGGCAACCTCACAA+TGG - tig0022476:17318-17337 Msa1400700:CDS 55.0%
GATGAAACCAGACCGGCTGA+AGG - tig0022476:17355-17374 Msa1400700:CDS 55.0%
TTGACTTCCTTCAGCCGGTC+TGG + tig0022476:17365-17384 None:intergenic 55.0%
CATGGGGTTCATCCAGAGGA+TGG - tig0022476:17454-17473 Msa1400700:intron 55.0%
! CCGTGTGAGGTAGCATTGAG+GGG + tig0022476:17573-17592 None:intergenic 55.0%
CCCCTCAATGCTACCTCACA+CGG - tig0022476:17570-17589 Msa1400700:intron 55.0%
! CCCGTGTGAGGTAGCATTGA+GGG + tig0022476:17574-17593 None:intergenic 55.0%
CCCTCAATGCTACCTCACAC+GGG - tig0022476:17571-17590 Msa1400700:intron 55.0%
ACCCGTGTGAGGTAGCATTG+AGG + tig0022476:17575-17594 None:intergenic 55.0%
TCACGACTAACACCCGTGTG+AGG + tig0022476:17586-17605 None:intergenic 55.0%
! CAGACGTTGCGAGTTCTGAC+TGG + tig0022476:17852-17871 None:intergenic 55.0%
GTCAGAACTCGCAACGTCTG+TGG - tig0022476:17852-17871 Msa1400700:intron 55.0%
CTTCACGGTACAAGGCAGCT+CGG + tig0022476:17893-17912 None:intergenic 55.0%
!! CAGAAGGTACCTGCAGAGGA+CGG + tig0022476:17995-18014 None:intergenic 55.0%
!! GGTGCCCACTTTTCACCATG+CGG - tig0022476:18103-18122 Msa1400700:CDS 55.0%
TCCCTTGAGGAGGCAACGTA+AGG - tig0022476:18280-18299 Msa1400700:CDS 55.0%
GCCTTACGTTGCCTCCTCAA+GGG + tig0022476:18284-18303 None:intergenic 55.0%
TGCCTTACGTTGCCTCCTCA+AGG + tig0022476:18285-18304 None:intergenic 55.0%
!! TTGGGTTGGTGCTTGCGTCT+CGG - tig0022476:18404-18423 Msa1400700:CDS 55.0%
GGTACGGACACAAGCAGAGA+AGG + tig0022476:18521-18540 None:intergenic 55.0%
CATGACGTCGACCATAGGCA+AGG + tig0022476:18848-18867 None:intergenic 55.0%
CTTGCCTATGGTCGACGTCA+TGG - tig0022476:18846-18865 Msa1400700:CDS 55.0%
!! GCTTCCGAGTGCTGAAGATG+AGG - tig0022476:19109-19128 Msa1400700:CDS 55.0%
! TTTCATCCTTTTCCCGGGGG+CGG - tig0022476:19146-19165 Msa1400700:CDS 55.0%
GGTGAGCACCATCATAGTGG+AGG + tig0022476:19291-19310 None:intergenic 55.0%
! CCACTATGATGGTGCTCACC+CGG - tig0022476:19291-19310 Msa1400700:CDS 55.0%
ATGGTGCTCACCCGGTGAAT+GGG - tig0022476:19299-19318 Msa1400700:CDS 55.0%
TTGGTCCAGTCCCATTCACC+GGG + tig0022476:19312-19331 None:intergenic 55.0%
CTTGGTCCAGTCCCATTCAC+CGG + tig0022476:19313-19332 None:intergenic 55.0%
ACTCCAACGATGGTCTCCTC+AGG + tig0022476:19343-19362 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + tig0022476:20000-20019 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - tig0022476:19999-20018 Msa1400700:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - tig0022476:20000-20019 Msa1400700:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - tig0022476:20006-20025 Msa1400700:intron 55.0%
ATGCTTGTCTGTCTCCCGAG+AGG - tig0022476:20239-20258 Msa1400700:intron 55.0%
GTCTCAAACCGAGTACCTCG+AGG + tig0022476:20292-20311 None:intergenic 55.0%
! GTGGTAAGCCTTTTGCACCC+TGG - tig0022476:20593-20612 Msa1400700:intron 55.0%
AAAGGAGGCCAGGGTGCAAA+AGG + tig0022476:20604-20623 None:intergenic 55.0%
CATCAGCGGAAACAGCTGCA+TGG + tig0022476:20876-20895 None:intergenic 55.0%
GAGGAGGGGTGGGAGTAAAA+GGG + tig0022476:21063-21082 None:intergenic 55.0%
AGAGGAGGGGTGGGAGTAAA+AGG + tig0022476:21064-21083 None:intergenic 55.0%
AAGGAGGAAAGAGGAGGGGT+GGG + tig0022476:21073-21092 None:intergenic 55.0%
GGCATGAAGGAGGAAAGAGG+AGG + tig0022476:21079-21098 None:intergenic 55.0%
! CCCACTAATGGGCATGAAGG+AGG + tig0022476:21089-21108 None:intergenic 55.0%
! TCGCCCACTAATGGGCATGA+AGG + tig0022476:21092-21111 None:intergenic 55.0%
ACCTTCACCGTCGTCTCGCT+AGG - tig0022476:15057-15076 Msa1400700:three_prime_UTR 60.0%
ACCTAGCGAGACGACGGTGA+AGG + tig0022476:15061-15080 None:intergenic 60.0%
GCAGAGACCTAGCGAGACGA+CGG + tig0022476:15067-15086 None:intergenic 60.0%
GCAGCGGCGTTTAGTCCAGA+TGG - tig0022476:15903-15922 Msa1400700:intron 60.0%
! CCACCCAAGGCGTCCTCATA+TGG + tig0022476:16097-16116 None:intergenic 60.0%
CCATATGAGGACGCCTTGGG+TGG - tig0022476:16094-16113 Msa1400700:intron 60.0%
TGCCGTTGCATCAGGCCACA+AGG - tig0022476:16553-16572 Msa1400700:intron 60.0%
GCATTGAGGGGAGACCAGCT+TGG + tig0022476:17561-17580 None:intergenic 60.0%
TACCTCATGCCGTCCTCTGC+AGG - tig0022476:17983-18002 Msa1400700:CDS 60.0%
TACCTGCAGAGGACGGCATG+AGG + tig0022476:17988-18007 None:intergenic 60.0%
!! TGGGTTGGTGCTTGCGTCTC+GGG - tig0022476:18405-18424 Msa1400700:CDS 60.0%
! TTCATCCTTTTCCCGGGGGC+GGG - tig0022476:19147-19166 Msa1400700:CDS 60.0%
TCCATAAACTAGCCCGCCCC+CGG + tig0022476:19162-19181 None:intergenic 60.0%
CCGGGTGAGCACCATCATAG+TGG + tig0022476:19294-19313 None:intergenic 60.0%
GATGGTGCTCACCCGGTGAA+TGG - tig0022476:19298-19317 Msa1400700:CDS 60.0%
CTGTCTCCCGAGAGGTCACT+TGG - tig0022476:20247-20266 Msa1400700:intron 60.0%
GAAGGAGGAAAGAGGAGGGG+TGG + tig0022476:21074-21093 None:intergenic 60.0%
CGCAACGTCTGTGGCTGCAG+CGG - tig0022476:17861-17880 Msa1400700:intron 65.0%
CCATAAACTAGCCCGCCCCC+GGG + tig0022476:19161-19180 None:intergenic 65.0%
GCTCACCCGGTGAATGGGAC+TGG - tig0022476:19304-19323 Msa1400700:CDS 65.0%
ACTAGCCCGCCCCCGGGAAA+AGG + tig0022476:19155-19174 None:intergenic 70.0%
!! CCCGGGGGCGGGCTAGTTTA+TGG - tig0022476:19158-19177 Msa1400700:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0022476 gene 15000 21249 15000 ID=Msa1400700;Name=Msa1400700
tig0022476 mRNA 15000 21249 15000 ID=Msa1400700-mRNA-1;Parent=Msa1400700;Name=Msa1400700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=277|1|1|1|0.71|0.73|15|437|773
tig0022476 exon 15000 15368 15000 ID=Msa1400700-mRNA-1:exon:17901;Parent=Msa1400700-mRNA-1
tig0022476 exon 15654 15716 15654 ID=Msa1400700-mRNA-1:exon:17900;Parent=Msa1400700-mRNA-1
tig0022476 exon 16872 16978 16872 ID=Msa1400700-mRNA-1:exon:17899;Parent=Msa1400700-mRNA-1
tig0022476 exon 17062 17175 17062 ID=Msa1400700-mRNA-1:exon:17898;Parent=Msa1400700-mRNA-1
tig0022476 exon 17317 17430 17317 ID=Msa1400700-mRNA-1:exon:17897;Parent=Msa1400700-mRNA-1
tig0022476 exon 17787 17847 17787 ID=Msa1400700-mRNA-1:exon:17896;Parent=Msa1400700-mRNA-1
tig0022476 exon 17953 18153 17953 ID=Msa1400700-mRNA-1:exon:17895;Parent=Msa1400700-mRNA-1
tig0022476 exon 18245 19329 18245 ID=Msa1400700-mRNA-1:exon:17894;Parent=Msa1400700-mRNA-1
tig0022476 exon 19435 19563 19435 ID=Msa1400700-mRNA-1:exon:17893;Parent=Msa1400700-mRNA-1
tig0022476 exon 19675 19742 19675 ID=Msa1400700-mRNA-1:exon:17892;Parent=Msa1400700-mRNA-1
tig0022476 exon 19874 19982 19874 ID=Msa1400700-mRNA-1:exon:17891;Parent=Msa1400700-mRNA-1
tig0022476 exon 20134 20218 20134 ID=Msa1400700-mRNA-1:exon:17890;Parent=Msa1400700-mRNA-1
tig0022476 exon 20303 20419 20303 ID=Msa1400700-mRNA-1:exon:17889;Parent=Msa1400700-mRNA-1
tig0022476 exon 20501 20587 20501 ID=Msa1400700-mRNA-1:exon:17888;Parent=Msa1400700-mRNA-1
tig0022476 exon 20923 21249 20923 ID=Msa1400700-mRNA-1:exon:17887;Parent=Msa1400700-mRNA-1
tig0022476 five_prime_UTR 20973 21249 20973 ID=Msa1400700-mRNA-1:five_prime_utr;Parent=Msa1400700-mRNA-1
tig0022476 CDS 20923 20972 20923 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 20501 20587 20501 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 20303 20419 20303 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 20134 20218 20134 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 19874 19982 19874 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 19675 19742 19675 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 19435 19563 19435 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 18245 19329 18245 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 17953 18153 17953 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 17787 17847 17787 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 17317 17430 17317 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 17062 17175 17062 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 CDS 16877 16978 16877 ID=Msa1400700-mRNA-1:cds;Parent=Msa1400700-mRNA-1
tig0022476 three_prime_UTR 16872 16876 16872 ID=Msa1400700-mRNA-1:three_prime_utr;Parent=Msa1400700-mRNA-1
tig0022476 three_prime_UTR 15654 15716 15654 ID=Msa1400700-mRNA-1:three_prime_utr;Parent=Msa1400700-mRNA-1
tig0022476 three_prime_UTR 15000 15368 15000 ID=Msa1400700-mRNA-1:three_prime_utr;Parent=Msa1400700-mRNA-1
Gene Sequence

>Msa1400700

ATGACGAGAATTCATCGGAATCGTGATCGCACCGGTAATTATAACGGCAGCAATGTCTTTAATTTGCTTGCACGGAGAGAGATTTCACCGAGAACAAAACATGTAGCAAGAGATGCAAAGCGTGGCCTATTGTCATGGGTTGAGGCTGATTCACTGCGGCATTTGTCAGCCAAGTATTGTTCTTTAGTACCTGCGCCAAGGTCTACTATTGCAGCGGCGTTTAGTCCAGATGGAAAAGTTCTTGCATCCACGCATGGTGACCACACAGTAAAGATAATCGACTGTGAAACTGGACGTTGCTTAAAGGTGTTAATTGGCCATATGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCGGAGTGCATAACATCTCACCACTTCTATCGACCAATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATCATTGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTACGACAAGAAAGGCGAAGCATCCTACTCCCCAATTTTTGTGTTAAAGACAAGGCGATCTCTACGGGCTGTTCATTTTCACCCTCATGCTGCGCCATATCTTTTAACGGCCGAGGTCAACGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACGTCCATTGGTTACTTACAATATCCTCCACCTGCTGTTTTTGTCACAAATGTTCATCCTACAGAACATGTTACTTTGTCTAGTGAACCACCTAATGTGTCATTGCCTTTCTTCCTCGTGCCTCCGTATTCTGTTGATGAGTCGAGAGCAGAGTTACAGCATGCTAGTCATGACGCTGGTTCAGGTAGAATACAAATTGAGTCTTCTGCCGTGGCTCAGTTTCAAGCGGACACAAATTCAACAGAACAACATGATACTATAGTGTCTCCCATGGATACAGTCTTGGAGATTCCGACTAACTCTCAAGCTGGTACAGAATATCCCGTGCATACTGCTTTCTCTAATGGAATGGGAATTGGCATCGGCAACCTCACAATGGACGGTATGGAGACTGATGAAACCAGACCGGCTGAAGGAAGTCAACACAGAAACCCTACCGATGCAAGTTCTCTTAATGGTATGTTACATGGATTATCTAGACAAACCGCAAATCATGGGGTTCATCCAGAGGATGGTCAATTTCATCCGTTTGTTTCTTCAAGAGACCCAAGTGGATGGGAATTACCTTTTCTACAAGGATGGATGATGGGTCAAAGCCAAGCTGGTCTCCCCTCAATGCTACCTCACACGGGTGTTAGTCGTGACACTCTAGCTCCACAGATTAGTTCTAGTGTAATGGCTAATACTCTTCCCACTTCTAATGCTGATGTAGCAATGCCATCTTCTGCAATGTCTGGCAGCATTAACATACCCGGATCTTCTGTAAGATCAGGTTTACGGAGTCATTTTTCACACTCACGGACACCTGTATCTGAATCCGGAAATCTTGCTGCTTCTATTAATACCCCACATGATGGATCTGACATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCAACGTCTGTGGCTGCAGCGGCAGCTACCGAGCTGCCTTGTACCGTGAAGTTAAGGGTGTGGTCTCATGACATAAAAAATCCCTGTTCCCCACTAAATGCTGACAGATGTCGTCTAATTATACCTCATGCCGTCCTCTGCAGTGAAATGGGTGCCCACTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCTGGATTACAAACTCCAGTACATCAAGAGTCTGGTATTGCAACATCACCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTGCTTGCGTCTCGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTCCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTATTAGAGGTATATAGAGTTTCAGATATGGAACTTGTTAGGGTGCTTCCGAGTGCTGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCCGGGGGCGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCACTATGATGGTGCTCACCCGGTGAATGGGACTGGACCAAGTTACTTTCCTGAGGAGACCATCGTTGGAGTCAGTCAGTGA
Protein sequence

>Msa1400700

MTRIHRNRDRTGNYNGSNVFNLLARREISPRTKHVARDAKRGLLSWVEADSLRHLSAKYCSLVPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLIGHMRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKGEASYSPIFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSIGYLQYPPPAVFVTNVHPTEHVTLSSEPPNVSLPFFLVPPYSVDESRAELQHASHDAGSGRIQIESSAVAQFQADTNSTEQHDTIVSPMDTVLEIPTNSQAGTEYPVHTAFSNGMGIGIGNLTMDGMETDETRPAEGSQHRNPTDASSLNGMLHGLSRQTANHGVHPEDGQFHPFVSSRDPSGWELPFLQGWMMGQSQAGLPSMLPHTGVSRDTLAPQISSSVMANTLPTSNADVAMPSSAMSGSINIPGSSVRSGLRSHFSHSRTPVSESGNLAASINTPHDGSDIQTIMSRIQSELATSVAAAAATELPCTVKLRVWSHDIKNPCSPLNADRCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPVNGTGPSYFPEETIVGVSQ*