Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343440 | XP_039687687.1 | 88.000 | 325 | 21 | 2 | 1 | 319 | 1 | 313 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343440 | sp|Q08298|RD22_ARATH | 53.586 | 237 | 103 | 5 | 87 | 318 | 157 | 391 | 1.02e-80 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343440 | G7I4D1 | 88.000 | 325 | 21 | 2 | 1 | 319 | 1 | 313 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0343440 | 0.803355 | 3.625960e-49 | -8.615850e-47 |
| Msa0008310 | Msa0343440 | 0.829929 | 3.910470e-55 | -8.615850e-47 |
| Msa0057290 | Msa0343440 | 0.919570 | 3.815239e-87 | -8.615850e-47 |
| Msa0075880 | Msa0343440 | 0.806679 | 7.317555e-50 | -8.615850e-47 |
| Msa0187250 | Msa0343440 | 0.800507 | 1.395130e-48 | -8.615850e-47 |
| Msa0213040 | Msa0343440 | 0.804088 | 2.554318e-49 | -8.615850e-47 |
| Msa0233300 | Msa0343440 | 0.807969 | 3.898957e-50 | -8.615850e-47 |
| Msa0326520 | Msa0343440 | 0.802665 | 5.036442e-49 | -8.615850e-47 |
| Msa0343440 | Msa0373450 | 0.812348 | 4.436912e-51 | -8.615850e-47 |
| Msa0343440 | Msa0477130 | -0.801001 | 1.106174e-48 | -8.615850e-47 |
| Msa0343440 | Msa0484780 | 0.833092 | 6.505446e-56 | -8.615850e-47 |
| Msa0343440 | Msa0760130 | 0.815035 | 1.136124e-51 | -8.615850e-47 |
| Msa0343440 | Msa1082500 | 0.821693 | 3.525906e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343440 | MtrunA17_Chr1g0147241 | 88.000 | 325 | 21 | 2 | 1 | 319 | 1 | 313 | 0.0 | 586 |
| Msa0343440 | MtrunA17_Chr1g0147261 | 72.414 | 319 | 69 | 2 | 1 | 319 | 1 | 300 | 1.09e-169 | 473 |
| Msa0343440 | MtrunA17_Chr1g0147271 | 56.171 | 397 | 84 | 7 | 1 | 319 | 1 | 385 | 5.28e-141 | 403 |
| Msa0343440 | MtrunA17_Chr1g0146631 | 64.968 | 314 | 88 | 6 | 26 | 319 | 14 | 325 | 6.02e-140 | 398 |
| Msa0343440 | MtrunA17_Chr1g0147331 | 60.802 | 324 | 85 | 6 | 26 | 319 | 14 | 325 | 7.51e-134 | 383 |
| Msa0343440 | MtrunA17_Chr1g0147311 | 60.615 | 325 | 105 | 7 | 18 | 319 | 32 | 356 | 5.95e-132 | 379 |
| Msa0343440 | MtrunA17_Chr1g0147291 | 65.299 | 268 | 76 | 4 | 67 | 319 | 2 | 267 | 2.59e-122 | 352 |
| Msa0343440 | MtrunA17_Chr1g0147251 | 69.672 | 244 | 70 | 2 | 76 | 319 | 4 | 243 | 1.14e-119 | 344 |
| Msa0343440 | MtrunA17_Chr1g0147301 | 70.000 | 240 | 66 | 4 | 86 | 319 | 46 | 285 | 2.20e-119 | 345 |
| Msa0343440 | MtrunA17_Chr1g0147321 | 72.197 | 223 | 58 | 3 | 96 | 316 | 15 | 235 | 3.79e-117 | 338 |
| Msa0343440 | MtrunA17_Chr3g0139431 | 51.952 | 333 | 129 | 10 | 1 | 316 | 1 | 319 | 1.70e-110 | 323 |
| Msa0343440 | MtrunA17_Chr4g0034821 | 39.640 | 222 | 128 | 4 | 104 | 319 | 71 | 292 | 7.31e-52 | 173 |
| Msa0343440 | MtrunA17_Chr3g0138231 | 38.889 | 234 | 137 | 3 | 92 | 319 | 34 | 267 | 7.71e-52 | 172 |
| Msa0343440 | MtrunA17_Chr3g0144451 | 37.946 | 224 | 133 | 3 | 102 | 319 | 53 | 276 | 4.72e-50 | 167 |
| Msa0343440 | MtrunA17_Chr3g0144421 | 39.908 | 218 | 124 | 4 | 105 | 316 | 84 | 300 | 1.03e-48 | 165 |
| Msa0343440 | MtrunA17_Chr3g0144411 | 38.710 | 217 | 125 | 5 | 105 | 316 | 323 | 536 | 3.48e-42 | 153 |
| Msa0343440 | MtrunA17_Chr3g0144391 | 38.249 | 217 | 126 | 4 | 105 | 316 | 290 | 503 | 9.07e-42 | 151 |
| Msa0343440 | MtrunA17_Chr8g0365361 | 37.963 | 216 | 123 | 5 | 108 | 316 | 181 | 392 | 1.71e-39 | 143 |
| Msa0343440 | MtrunA17_Chr4g0034451 | 32.927 | 246 | 152 | 7 | 81 | 316 | 282 | 524 | 3.51e-38 | 142 |
| Msa0343440 | MtrunA17_Chr2g0318901 | 30.818 | 318 | 157 | 13 | 1 | 316 | 1 | 257 | 5.26e-38 | 136 |
| Msa0343440 | MtrunA17_Chr8g0355861 | 31.329 | 316 | 159 | 12 | 1 | 316 | 1 | 258 | 8.14e-38 | 135 |
| Msa0343440 | MtrunA17_Chr4g0034731 | 34.597 | 211 | 129 | 6 | 113 | 316 | 222 | 430 | 4.28e-36 | 134 |
| Msa0343440 | MtrunA17_Chr8g0365401 | 36.574 | 216 | 126 | 5 | 108 | 316 | 412 | 623 | 1.30e-35 | 135 |
| Msa0343440 | MtrunA17_Chr2g0318871 | 29.560 | 318 | 161 | 11 | 1 | 316 | 1 | 257 | 4.05e-35 | 128 |
| Msa0343440 | MtrunA17_Chr8g0355321 | 26.844 | 339 | 164 | 8 | 22 | 316 | 2 | 300 | 4.70e-35 | 129 |
| Msa0343440 | MtrunA17_Chr5g0413591 | 33.953 | 215 | 133 | 5 | 108 | 316 | 415 | 626 | 3.80e-34 | 131 |
| Msa0343440 | MtrunA17_Chr1g0147231 | 73.494 | 83 | 21 | 1 | 92 | 173 | 48 | 130 | 9.91e-34 | 121 |
| Msa0343440 | MtrunA17_Chr4g0034721 | 34.737 | 190 | 117 | 4 | 134 | 316 | 385 | 574 | 3.47e-33 | 128 |
| Msa0343440 | MtrunA17_Chr8g0355311 | 43.262 | 141 | 75 | 4 | 176 | 316 | 53 | 188 | 3.60e-33 | 121 |
| Msa0343440 | MtrunA17_Chr4g0034691 | 34.737 | 190 | 117 | 4 | 134 | 316 | 517 | 706 | 1.02e-32 | 127 |
| Msa0343440 | MtrunA17_Chr8g0365381 | 35.023 | 217 | 132 | 5 | 108 | 318 | 429 | 642 | 2.23e-32 | 126 |
| Msa0343440 | MtrunA17_Chr8g0355331 | 44.030 | 134 | 70 | 4 | 183 | 316 | 291 | 419 | 6.49e-31 | 120 |
| Msa0343440 | MtrunA17_Chr2g0318931 | 27.414 | 321 | 159 | 15 | 8 | 316 | 10 | 268 | 8.94e-31 | 117 |
| Msa0343440 | MtrunA17_Chr6g0485051 | 32.143 | 196 | 125 | 5 | 132 | 319 | 11 | 206 | 9.55e-31 | 115 |
| Msa0343440 | MtrunA17_Chr3g0117791 | 36.316 | 190 | 112 | 5 | 133 | 316 | 438 | 624 | 9.91e-31 | 122 |
| Msa0343440 | MtrunA17_Chr8g0355841 | 45.522 | 134 | 68 | 4 | 183 | 316 | 379 | 507 | 3.46e-30 | 119 |
| Msa0343440 | MtrunA17_Chr8g0355871 | 31.718 | 227 | 118 | 8 | 100 | 317 | 23 | 221 | 4.69e-29 | 111 |
| Msa0343440 | MtrunA17_Chr1g0168781 | 30.247 | 324 | 151 | 14 | 1 | 316 | 1 | 257 | 2.96e-28 | 110 |
| Msa0343440 | MtrunA17_Chr8g0355831 | 44.030 | 134 | 70 | 4 | 183 | 316 | 221 | 349 | 6.80e-28 | 111 |
| Msa0343440 | MtrunA17_Chr5g0412981 | 28.767 | 219 | 143 | 5 | 106 | 316 | 195 | 408 | 3.85e-24 | 101 |
| Msa0343440 | MtrunA17_Chr5g0412981 | 29.016 | 193 | 118 | 7 | 122 | 304 | 1 | 184 | 1.03e-17 | 83.2 |
| Msa0343440 | MtrunA17_Chr5g0412991 | 28.767 | 219 | 143 | 5 | 106 | 316 | 195 | 408 | 4.16e-24 | 101 |
| Msa0343440 | MtrunA17_Chr5g0412991 | 28.497 | 193 | 119 | 7 | 122 | 304 | 1 | 184 | 2.31e-17 | 82.0 |
| Msa0343440 | MtrunA17_Chr4g0076231 | 34.416 | 154 | 97 | 4 | 167 | 316 | 3 | 156 | 5.39e-23 | 93.2 |
| Msa0343440 | MtrunA17_Chr5g0412951 | 28.780 | 205 | 131 | 6 | 122 | 316 | 8 | 207 | 1.66e-20 | 88.2 |
| Msa0343440 | MtrunA17_Chr8g0371951 | 39.726 | 73 | 40 | 2 | 238 | 307 | 16 | 87 | 7.55e-14 | 66.2 |
| Msa0343440 | MtrunA17_Chr5g0413021 | 29.545 | 132 | 81 | 4 | 192 | 316 | 1 | 127 | 9.66e-14 | 67.4 |
| Msa0343440 | MtrunA17_Chr4g0034051 | 36.000 | 75 | 45 | 3 | 245 | 316 | 3 | 77 | 1.69e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343440 | AT5G25610.1 | 53.586 | 237 | 103 | 5 | 87 | 318 | 157 | 391 | 1.03e-81 | 253 |
| Msa0343440 | AT1G49320.1 | 36.087 | 230 | 136 | 5 | 101 | 319 | 51 | 280 | 1.27e-44 | 154 |
| Msa0343440 | AT1G60390.1 | 36.239 | 218 | 124 | 6 | 108 | 316 | 409 | 620 | 9.33e-34 | 130 |
| Msa0343440 | AT1G70370.2 | 34.579 | 214 | 133 | 3 | 108 | 316 | 411 | 622 | 2.08e-32 | 127 |
| Msa0343440 | AT1G70370.1 | 34.579 | 214 | 133 | 3 | 108 | 316 | 411 | 622 | 2.08e-32 | 127 |
| Msa0343440 | AT1G23760.1 | 33.645 | 214 | 135 | 4 | 108 | 316 | 407 | 618 | 4.47e-30 | 120 |
Find 64 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGGCTATGTTCTTAT+TGG | 0.163708 | 3_1:+1581798 | Msa0343440:CDS |
| CACTTGATAGATTAGAAATT+TGG | 0.167180 | 3_1:-1581127 | None:intergenic |
| TCCACTTTGTTTGATGAAAA+TGG | 0.206491 | 3_1:-1581919 | None:intergenic |
| ATTACATGATAATCGAAATT+TGG | 0.215285 | 3_1:+1581783 | Msa0343440:CDS |
| TTGGACTTCCAATACAATTC+AGG | 0.287171 | 3_1:-1581273 | None:intergenic |
| ACTATTTCAACAGAAGTAAA+TGG | 0.306242 | 3_1:+1582114 | Msa0343440:CDS |
| AGCAAACAGAGTGAAGAAAA+TGG | 0.310868 | 3_1:+1582164 | Msa0343440:CDS |
| TTCCGTCGATCCTTGCTTGA+TGG | 0.311634 | 3_1:-1581962 | None:intergenic |
| CAAGTGCTCAAAGTTCAAAA+AGG | 0.316009 | 3_1:+1582369 | Msa0343440:CDS |
| GATGGAAAAGGCAGTGTTAA+TGG | 0.322738 | 3_1:+1581694 | Msa0343440:CDS |
| TGTGACATCATTGGAATCTA+TGG | 0.323363 | 3_1:+1582053 | Msa0343440:CDS |
| ACTTGAAAAGCCAAATGTTT+AGG | 0.337232 | 3_1:-1582351 | None:intergenic |
| AATTTGAGTTGTGGGAAGTT+TGG | 0.355507 | 3_1:-1581292 | None:intergenic |
| TAGATTAGAAATTTGGAAAC+AGG | 0.361884 | 3_1:-1581120 | None:intergenic |
| GGCTATGTTCTTATTGGAAA+AGG | 0.370735 | 3_1:+1581804 | Msa0343440:CDS |
| GAAAATGGGAGAGAACAATT+TGG | 0.374965 | 3_1:+1582179 | Msa0343440:CDS |
| TACAACAGGGTCAAGTTGTT+TGG | 0.384712 | 3_1:+1582415 | Msa0343440:CDS |
| CCTTACCACCTGAATTGTAT+TGG | 0.385889 | 3_1:+1581265 | Msa0343440:CDS |
| ACAATGGAGTCCTAAACATT+TGG | 0.392896 | 3_1:+1582341 | Msa0343440:CDS |
| TGACAGTAAAACACTGCATA+AGG | 0.401155 | 3_1:-1582225 | None:intergenic |
| AAAGCTTTGTGTGACATCAT+TGG | 0.404983 | 3_1:+1582044 | Msa0343440:CDS |
| AAACAACTTGACCCTGTTGT+AGG | 0.414196 | 3_1:-1582413 | None:intergenic |
| AGTTTGCCACATCCTACAAC+AGG | 0.427433 | 3_1:+1582401 | Msa0343440:CDS |
| TTGCCTCTGGAAGGTGCTGA+TGG | 0.457330 | 3_1:+1582276 | Msa0343440:CDS |
| GATTTCACTACTTCGAAACT+TGG | 0.458312 | 3_1:+1582078 | Msa0343440:CDS |
| TGTTGTAGGATGTGGCAAAC+TGG | 0.462952 | 3_1:-1582399 | None:intergenic |
| CATAAGGGTAATTCCGTTTG+TGG | 0.469316 | 3_1:-1582209 | None:intergenic |
| GCAAACAGAGTGAAGAAAAT+GGG | 0.469711 | 3_1:+1582165 | Msa0343440:CDS |
| ATTTGGTTGTGTGCCACAAA+CGG | 0.476684 | 3_1:+1582196 | Msa0343440:CDS |
| TAAAGTGTACTCTTTGCCTC+TGG | 0.484430 | 3_1:+1582263 | Msa0343440:CDS |
| GCTTGATGGAGAAGTAGTTA+AGG | 0.487051 | 3_1:-1581948 | None:intergenic |
| TTTGTTTGATGAAAATGGTA+TGG | 0.490197 | 3_1:-1581914 | None:intergenic |
| TGAGAGAGATAAAGATGGAT+AGG | 0.504475 | 3_1:-1581088 | None:intergenic |
| GAGATAAAGATGGATAGGTA+AGG | 0.508341 | 3_1:-1581083 | None:intergenic |
| CCAATACAATTCAGGTGGTA+AGG | 0.508538 | 3_1:-1581265 | None:intergenic |
| ATAAGTGAGTGTGAAGCATA+TGG | 0.510314 | 3_1:+1582006 | Msa0343440:CDS |
| TTCAGGTGGTAAGGCAGCAT+GGG | 0.525536 | 3_1:-1581256 | None:intergenic |
| GACAGTAAAACACTGCATAA+GGG | 0.527238 | 3_1:-1582224 | None:intergenic |
| ACAGAAGTAAATGGAGAAAG+TGG | 0.530769 | 3_1:+1582123 | Msa0343440:CDS |
| ATTCAGGTGGTAAGGCAGCA+TGG | 0.531131 | 3_1:-1581257 | None:intergenic |
| TTGGAAAAGGACTTGCATCA+TGG | 0.533727 | 3_1:+1581817 | Msa0343440:CDS |
| TGTTGTATTGCAGCTTGCAC+TGG | 0.537151 | 3_1:+1581227 | Msa0343440:intron |
| GGTGGAACATCAGTGGATGA+TGG | 0.538786 | 3_1:+1581676 | Msa0343440:CDS |
| TGTGAAGCATATGGTATCAA+AGG | 0.543560 | 3_1:+1582015 | Msa0343440:CDS |
| ACATCAGTGGATGATGGAAA+AGG | 0.549870 | 3_1:+1581682 | Msa0343440:CDS |
| TACATTGAGAGAGATAAAGA+TGG | 0.553838 | 3_1:-1581093 | None:intergenic |
| CTCCATCAAGCAAGGATCGA+CGG | 0.567679 | 3_1:+1581960 | Msa0343440:CDS |
| TTTCAAACTGTAGGAAAAGG+TGG | 0.576334 | 3_1:+1581658 | Msa0343440:intron |
| TAGTCTACTAACTTGGGTGA+AGG | 0.576755 | 3_1:-1581335 | None:intergenic |
| GACTTCCAATACAATTCAGG+TGG | 0.581844 | 3_1:-1581270 | None:intergenic |
| TGGGTGAAGGATATCTGAGA+TGG | 0.592227 | 3_1:-1581322 | None:intergenic |
| GTGTACTCTTTGCCTCTGGA+AGG | 0.594455 | 3_1:+1582267 | Msa0343440:CDS |
| AACTACTTCTCCATCAAGCA+AGG | 0.596765 | 3_1:+1581952 | Msa0343440:CDS |
| CTTGACCCTGTTGTAGGATG+TGG | 0.602810 | 3_1:-1582407 | None:intergenic |
| GAGGCAAGAATGTTGGTCCA+TGG | 0.603479 | 3_1:-1581876 | None:intergenic |
| ATGGAATTAGCAACGTCGCG+AGG | 0.606572 | 3_1:-1581895 | None:intergenic |
| TGTATTGCAGCTTGCACTGG+TGG | 0.618212 | 3_1:+1581230 | Msa0343440:intron |
| ACGTCGCGAGGCAAGAATGT+TGG | 0.624134 | 3_1:-1581883 | None:intergenic |
| AGGAAAAGGTGGAACATCAG+TGG | 0.626444 | 3_1:+1581669 | Msa0343440:intron |
| AGCATATGGTATCAAAGGAG+AGG | 0.627493 | 3_1:+1582020 | Msa0343440:CDS |
| CTTCCATCAGCACCTTCCAG+AGG | 0.659408 | 3_1:-1582279 | None:intergenic |
| TTCACAAAGACATCAGACCA+TGG | 0.689219 | 3_1:+1581859 | Msa0343440:CDS |
| GTCACACTGATACTTCACAA+TGG | 0.703281 | 3_1:+1582325 | Msa0343440:CDS |
| GTTTGCCACATCCTACAACA+GGG | 0.745484 | 3_1:+1582402 | Msa0343440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTACTTTAATGA+TGG | + | chr3_1:1581449-1581468 | Msa0343440:intron | 10.0% |
| !! | TTTATATTTACTTTAATGAT+GGG | + | chr3_1:1581450-1581469 | Msa0343440:intron | 10.0% |
| !!! | TTTTATATTTACTTTAATGA+TGG | + | chr3_1:1581449-1581468 | Msa0343440:intron | 10.0% |
| !! | TTTATATTTACTTTAATGAT+GGG | + | chr3_1:1581450-1581469 | Msa0343440:intron | 10.0% |
| !! | AAAAAATTAAATAGGAATAG+AGG | - | chr3_1:1581372-1581391 | None:intergenic | 15.0% |
| !!! | TTACATATTTTTTTCTAATG+AGG | - | chr3_1:1581584-1581603 | None:intergenic | 15.0% |
| !!! | GTTTGAAACTTATTTTATTA+AGG | - | chr3_1:1581646-1581665 | None:intergenic | 15.0% |
| !! | TCATTTGCATAAAAATAAAT+TGG | - | chr3_1:1581748-1581767 | None:intergenic | 15.0% |
| !! | AAAAAATTAAATAGGAATAG+AGG | - | chr3_1:1581372-1581391 | None:intergenic | 15.0% |
| !!! | TTACATATTTTTTTCTAATG+AGG | - | chr3_1:1581584-1581603 | None:intergenic | 15.0% |
| !!! | GTTTGAAACTTATTTTATTA+AGG | - | chr3_1:1581646-1581665 | None:intergenic | 15.0% |
| !! | TCATTTGCATAAAAATAAAT+TGG | - | chr3_1:1581748-1581767 | None:intergenic | 15.0% |
| !! | ATGCTAAAAAGGTAATATAT+GGG | - | chr3_1:1581170-1581189 | None:intergenic | 20.0% |
| !! | AATGCTAAAAAGGTAATATA+TGG | - | chr3_1:1581171-1581190 | None:intergenic | 20.0% |
| !! | GAAATGAAATAATGCTAAAA+AGG | - | chr3_1:1581181-1581200 | None:intergenic | 20.0% |
| !!! | TATAATATTTTTTGAGCTTG+AGG | + | chr3_1:1581611-1581630 | Msa0343440:intron | 20.0% |
| !! | TAAAATAAGTTTCAAACTGT+AGG | + | chr3_1:1581649-1581668 | Msa0343440:intron | 20.0% |
| !! | ATTACATGATAATCGAAATT+TGG | + | chr3_1:1581783-1581802 | Msa0343440:CDS | 20.0% |
| !! | ATGCTAAAAAGGTAATATAT+GGG | - | chr3_1:1581170-1581189 | None:intergenic | 20.0% |
| !! | AATGCTAAAAAGGTAATATA+TGG | - | chr3_1:1581171-1581190 | None:intergenic | 20.0% |
| !! | GAAATGAAATAATGCTAAAA+AGG | - | chr3_1:1581181-1581200 | None:intergenic | 20.0% |
| !!! | TATAATATTTTTTGAGCTTG+AGG | + | chr3_1:1581611-1581630 | Msa0343440:intron | 20.0% |
| !! | TAAAATAAGTTTCAAACTGT+AGG | + | chr3_1:1581649-1581668 | Msa0343440:intron | 20.0% |
| !! | ATTACATGATAATCGAAATT+TGG | + | chr3_1:1581783-1581802 | Msa0343440:CDS | 20.0% |
| ! | TAGATTAGAAATTTGGAAAC+AGG | - | chr3_1:1581123-1581142 | None:intergenic | 25.0% |
| ! | CACTTGATAGATTAGAAATT+TGG | - | chr3_1:1581130-1581149 | None:intergenic | 25.0% |
| ! | TATATCTAGTCTACTAACTT+GGG | - | chr3_1:1581344-1581363 | None:intergenic | 25.0% |
| ! | ATATATCTAGTCTACTAACT+TGG | - | chr3_1:1581345-1581364 | None:intergenic | 25.0% |
| !!! | TGATTCAGTTGGTAAAAATT+AGG | + | chr3_1:1581523-1581542 | Msa0343440:intron | 25.0% |
| ! | AAATTTGGCTATGTTCTTAT+TGG | + | chr3_1:1581798-1581817 | Msa0343440:CDS | 25.0% |
| ! | TTTGTTTGATGAAAATGGTA+TGG | - | chr3_1:1581917-1581936 | None:intergenic | 25.0% |
| ! | ACTATTTCAACAGAAGTAAA+TGG | + | chr3_1:1582114-1582133 | Msa0343440:CDS | 25.0% |
| ! | TAGATTAGAAATTTGGAAAC+AGG | - | chr3_1:1581123-1581142 | None:intergenic | 25.0% |
| ! | CACTTGATAGATTAGAAATT+TGG | - | chr3_1:1581130-1581149 | None:intergenic | 25.0% |
| ! | TATATCTAGTCTACTAACTT+GGG | - | chr3_1:1581344-1581363 | None:intergenic | 25.0% |
| ! | ATATATCTAGTCTACTAACT+TGG | - | chr3_1:1581345-1581364 | None:intergenic | 25.0% |
| !!! | TGATTCAGTTGGTAAAAATT+AGG | + | chr3_1:1581523-1581542 | Msa0343440:intron | 25.0% |
| ! | AAATTTGGCTATGTTCTTAT+TGG | + | chr3_1:1581798-1581817 | Msa0343440:CDS | 25.0% |
| ! | TTTGTTTGATGAAAATGGTA+TGG | - | chr3_1:1581917-1581936 | None:intergenic | 25.0% |
| ! | ACTATTTCAACAGAAGTAAA+TGG | + | chr3_1:1582114-1582133 | Msa0343440:CDS | 25.0% |
| TACATTGAGAGAGATAAAGA+TGG | - | chr3_1:1581096-1581115 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGAATTTGAGTTGT+GGG | - | chr3_1:1581303-1581322 | None:intergenic | 30.0% |
| ATGGGAAACACTAAATTTGA+TGG | + | chr3_1:1581468-1581487 | Msa0343440:intron | 30.0% | |
| AAGTTTCAAACTGTAGGAAA+AGG | + | chr3_1:1581655-1581674 | Msa0343440:intron | 30.0% | |
| ! | ACCATTTTCATCAAACAAAG+TGG | + | chr3_1:1581918-1581937 | Msa0343440:CDS | 30.0% |
| ! | TCCACTTTGTTTGATGAAAA+TGG | - | chr3_1:1581922-1581941 | None:intergenic | 30.0% |
| ACTTGAAAAGCCAAATGTTT+AGG | - | chr3_1:1582354-1582373 | None:intergenic | 30.0% | |
| TACATTGAGAGAGATAAAGA+TGG | - | chr3_1:1581096-1581115 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGAATTTGAGTTGT+GGG | - | chr3_1:1581303-1581322 | None:intergenic | 30.0% |
| ATGGGAAACACTAAATTTGA+TGG | + | chr3_1:1581468-1581487 | Msa0343440:intron | 30.0% | |
| AAGTTTCAAACTGTAGGAAA+AGG | + | chr3_1:1581655-1581674 | Msa0343440:intron | 30.0% | |
| ! | ACCATTTTCATCAAACAAAG+TGG | + | chr3_1:1581918-1581937 | Msa0343440:CDS | 30.0% |
| ! | TCCACTTTGTTTGATGAAAA+TGG | - | chr3_1:1581922-1581941 | None:intergenic | 30.0% |
| ACTTGAAAAGCCAAATGTTT+AGG | - | chr3_1:1582354-1582373 | None:intergenic | 30.0% | |
| GAGATAAAGATGGATAGGTA+AGG | - | chr3_1:1581086-1581105 | None:intergenic | 35.0% | |
| TGAGAGAGATAAAGATGGAT+AGG | - | chr3_1:1581091-1581110 | None:intergenic | 35.0% | |
| TTGGACTTCCAATACAATTC+AGG | - | chr3_1:1581276-1581295 | None:intergenic | 35.0% | |
| !! | AATTTGAGTTGTGGGAAGTT+TGG | - | chr3_1:1581295-1581314 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGAATTTGAGTTG+TGG | - | chr3_1:1581304-1581323 | None:intergenic | 35.0% |
| !! | AGGATATCTGAGATGGTTTT+TGG | - | chr3_1:1581318-1581337 | None:intergenic | 35.0% |
| ! | GACGAAAAAGTTGATTCAGT+TGG | + | chr3_1:1581512-1581531 | Msa0343440:intron | 35.0% |
| ! | TTTTCTAATGAGGTTTGCAC+CGG | - | chr3_1:1581574-1581593 | None:intergenic | 35.0% |
| TTTCAAACTGTAGGAAAAGG+TGG | + | chr3_1:1581658-1581677 | Msa0343440:intron | 35.0% | |
| GCAGTGTTAATGGAAAAACA+AGG | + | chr3_1:1581704-1581723 | Msa0343440:CDS | 35.0% | |
| GGCTATGTTCTTATTGGAAA+AGG | + | chr3_1:1581804-1581823 | Msa0343440:CDS | 35.0% | |
| ATAAGTGAGTGTGAAGCATA+TGG | + | chr3_1:1582006-1582025 | Msa0343440:CDS | 35.0% | |
| TGTGAAGCATATGGTATCAA+AGG | + | chr3_1:1582015-1582034 | Msa0343440:CDS | 35.0% | |
| ! | AAAGCTTTGTGTGACATCAT+TGG | + | chr3_1:1582044-1582063 | Msa0343440:CDS | 35.0% |
| TGTGACATCATTGGAATCTA+TGG | + | chr3_1:1582053-1582072 | Msa0343440:CDS | 35.0% | |
| GATTTCACTACTTCGAAACT+TGG | + | chr3_1:1582078-1582097 | Msa0343440:CDS | 35.0% | |
| ACAGAAGTAAATGGAGAAAG+TGG | + | chr3_1:1582123-1582142 | Msa0343440:CDS | 35.0% | |
| AGCAAACAGAGTGAAGAAAA+TGG | + | chr3_1:1582164-1582183 | Msa0343440:CDS | 35.0% | |
| GCAAACAGAGTGAAGAAAAT+GGG | + | chr3_1:1582165-1582184 | Msa0343440:CDS | 35.0% | |
| GAAAATGGGAGAGAACAATT+TGG | + | chr3_1:1582179-1582198 | Msa0343440:CDS | 35.0% | |
| GACAGTAAAACACTGCATAA+GGG | - | chr3_1:1582227-1582246 | None:intergenic | 35.0% | |
| TGACAGTAAAACACTGCATA+AGG | - | chr3_1:1582228-1582247 | None:intergenic | 35.0% | |
| ACAATGGAGTCCTAAACATT+TGG | + | chr3_1:1582341-1582360 | Msa0343440:CDS | 35.0% | |
| CAAGTGCTCAAAGTTCAAAA+AGG | + | chr3_1:1582369-1582388 | Msa0343440:CDS | 35.0% | |
| GAGATAAAGATGGATAGGTA+AGG | - | chr3_1:1581086-1581105 | None:intergenic | 35.0% | |
| TGAGAGAGATAAAGATGGAT+AGG | - | chr3_1:1581091-1581110 | None:intergenic | 35.0% | |
| TTGGACTTCCAATACAATTC+AGG | - | chr3_1:1581276-1581295 | None:intergenic | 35.0% | |
| !! | AATTTGAGTTGTGGGAAGTT+TGG | - | chr3_1:1581295-1581314 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGAATTTGAGTTG+TGG | - | chr3_1:1581304-1581323 | None:intergenic | 35.0% |
| !! | AGGATATCTGAGATGGTTTT+TGG | - | chr3_1:1581318-1581337 | None:intergenic | 35.0% |
| ! | GACGAAAAAGTTGATTCAGT+TGG | + | chr3_1:1581512-1581531 | Msa0343440:intron | 35.0% |
| ! | TTTTCTAATGAGGTTTGCAC+CGG | - | chr3_1:1581574-1581593 | None:intergenic | 35.0% |
| TTTCAAACTGTAGGAAAAGG+TGG | + | chr3_1:1581658-1581677 | Msa0343440:intron | 35.0% | |
| GCAGTGTTAATGGAAAAACA+AGG | + | chr3_1:1581704-1581723 | Msa0343440:CDS | 35.0% | |
| GGCTATGTTCTTATTGGAAA+AGG | + | chr3_1:1581804-1581823 | Msa0343440:CDS | 35.0% | |
| ATAAGTGAGTGTGAAGCATA+TGG | + | chr3_1:1582006-1582025 | Msa0343440:CDS | 35.0% | |
| TGTGAAGCATATGGTATCAA+AGG | + | chr3_1:1582015-1582034 | Msa0343440:CDS | 35.0% | |
| ! | AAAGCTTTGTGTGACATCAT+TGG | + | chr3_1:1582044-1582063 | Msa0343440:CDS | 35.0% |
| TGTGACATCATTGGAATCTA+TGG | + | chr3_1:1582053-1582072 | Msa0343440:CDS | 35.0% | |
| GATTTCACTACTTCGAAACT+TGG | + | chr3_1:1582078-1582097 | Msa0343440:CDS | 35.0% | |
| ACAGAAGTAAATGGAGAAAG+TGG | + | chr3_1:1582123-1582142 | Msa0343440:CDS | 35.0% | |
| AGCAAACAGAGTGAAGAAAA+TGG | + | chr3_1:1582164-1582183 | Msa0343440:CDS | 35.0% | |
| GCAAACAGAGTGAAGAAAAT+GGG | + | chr3_1:1582165-1582184 | Msa0343440:CDS | 35.0% | |
| GAAAATGGGAGAGAACAATT+TGG | + | chr3_1:1582179-1582198 | Msa0343440:CDS | 35.0% | |
| GACAGTAAAACACTGCATAA+GGG | - | chr3_1:1582227-1582246 | None:intergenic | 35.0% | |
| TGACAGTAAAACACTGCATA+AGG | - | chr3_1:1582228-1582247 | None:intergenic | 35.0% | |
| ACAATGGAGTCCTAAACATT+TGG | + | chr3_1:1582341-1582360 | Msa0343440:CDS | 35.0% | |
| CAAGTGCTCAAAGTTCAAAA+AGG | + | chr3_1:1582369-1582388 | Msa0343440:CDS | 35.0% | |
| CCAATACAATTCAGGTGGTA+AGG | - | chr3_1:1581268-1581287 | None:intergenic | 40.0% | |
| CCTTACCACCTGAATTGTAT+TGG | + | chr3_1:1581265-1581284 | Msa0343440:CDS | 40.0% | |
| GACTTCCAATACAATTCAGG+TGG | - | chr3_1:1581273-1581292 | None:intergenic | 40.0% | |
| TAGTCTACTAACTTGGGTGA+AGG | - | chr3_1:1581338-1581357 | None:intergenic | 40.0% | |
| !! | ACATCAGTGGATGATGGAAA+AGG | + | chr3_1:1581682-1581701 | Msa0343440:CDS | 40.0% |
| GATGGAAAAGGCAGTGTTAA+TGG | + | chr3_1:1581694-1581713 | Msa0343440:CDS | 40.0% | |
| TTGGAAAAGGACTTGCATCA+TGG | + | chr3_1:1581817-1581836 | Msa0343440:CDS | 40.0% | |
| TTCACAAAGACATCAGACCA+TGG | + | chr3_1:1581859-1581878 | Msa0343440:CDS | 40.0% | |
| GCTTGATGGAGAAGTAGTTA+AGG | - | chr3_1:1581951-1581970 | None:intergenic | 40.0% | |
| AACTACTTCTCCATCAAGCA+AGG | + | chr3_1:1581952-1581971 | Msa0343440:CDS | 40.0% | |
| AGCATATGGTATCAAAGGAG+AGG | + | chr3_1:1582020-1582039 | Msa0343440:CDS | 40.0% | |
| ATTTGGTTGTGTGCCACAAA+CGG | + | chr3_1:1582196-1582215 | Msa0343440:CDS | 40.0% | |
| CATAAGGGTAATTCCGTTTG+TGG | - | chr3_1:1582212-1582231 | None:intergenic | 40.0% | |
| TAAAGTGTACTCTTTGCCTC+TGG | + | chr3_1:1582263-1582282 | Msa0343440:CDS | 40.0% | |
| GTCACACTGATACTTCACAA+TGG | + | chr3_1:1582325-1582344 | Msa0343440:CDS | 40.0% | |
| AAACAACTTGACCCTGTTGT+AGG | - | chr3_1:1582416-1582435 | None:intergenic | 40.0% | |
| ! | TACAACAGGGTCAAGTTGTT+TGG | + | chr3_1:1582415-1582434 | Msa0343440:CDS | 40.0% |
| CCAATACAATTCAGGTGGTA+AGG | - | chr3_1:1581268-1581287 | None:intergenic | 40.0% | |
| CCTTACCACCTGAATTGTAT+TGG | + | chr3_1:1581265-1581284 | Msa0343440:CDS | 40.0% | |
| GACTTCCAATACAATTCAGG+TGG | - | chr3_1:1581273-1581292 | None:intergenic | 40.0% | |
| TAGTCTACTAACTTGGGTGA+AGG | - | chr3_1:1581338-1581357 | None:intergenic | 40.0% | |
| !! | ACATCAGTGGATGATGGAAA+AGG | + | chr3_1:1581682-1581701 | Msa0343440:CDS | 40.0% |
| GATGGAAAAGGCAGTGTTAA+TGG | + | chr3_1:1581694-1581713 | Msa0343440:CDS | 40.0% | |
| TTGGAAAAGGACTTGCATCA+TGG | + | chr3_1:1581817-1581836 | Msa0343440:CDS | 40.0% | |
| TTCACAAAGACATCAGACCA+TGG | + | chr3_1:1581859-1581878 | Msa0343440:CDS | 40.0% | |
| GCTTGATGGAGAAGTAGTTA+AGG | - | chr3_1:1581951-1581970 | None:intergenic | 40.0% | |
| AACTACTTCTCCATCAAGCA+AGG | + | chr3_1:1581952-1581971 | Msa0343440:CDS | 40.0% | |
| AGCATATGGTATCAAAGGAG+AGG | + | chr3_1:1582020-1582039 | Msa0343440:CDS | 40.0% | |
| ATTTGGTTGTGTGCCACAAA+CGG | + | chr3_1:1582196-1582215 | Msa0343440:CDS | 40.0% | |
| CATAAGGGTAATTCCGTTTG+TGG | - | chr3_1:1582212-1582231 | None:intergenic | 40.0% | |
| TAAAGTGTACTCTTTGCCTC+TGG | + | chr3_1:1582263-1582282 | Msa0343440:CDS | 40.0% | |
| GTCACACTGATACTTCACAA+TGG | + | chr3_1:1582325-1582344 | Msa0343440:CDS | 40.0% | |
| AAACAACTTGACCCTGTTGT+AGG | - | chr3_1:1582416-1582435 | None:intergenic | 40.0% | |
| ! | TACAACAGGGTCAAGTTGTT+TGG | + | chr3_1:1582415-1582434 | Msa0343440:CDS | 40.0% |
| TGTTGTATTGCAGCTTGCAC+TGG | + | chr3_1:1581227-1581246 | Msa0343440:intron | 45.0% | |
| TGGGTGAAGGATATCTGAGA+TGG | - | chr3_1:1581325-1581344 | None:intergenic | 45.0% | |
| CTCACAAAGATGTGAGTTGC+CGG | + | chr3_1:1581552-1581571 | Msa0343440:intron | 45.0% | |
| AGGAAAAGGTGGAACATCAG+TGG | + | chr3_1:1581669-1581688 | Msa0343440:intron | 45.0% | |
| TGTTGTAGGATGTGGCAAAC+TGG | - | chr3_1:1582402-1582421 | None:intergenic | 45.0% | |
| AGTTTGCCACATCCTACAAC+AGG | + | chr3_1:1582401-1582420 | Msa0343440:CDS | 45.0% | |
| GTTTGCCACATCCTACAACA+GGG | + | chr3_1:1582402-1582421 | Msa0343440:CDS | 45.0% | |
| TGTTGTATTGCAGCTTGCAC+TGG | + | chr3_1:1581227-1581246 | Msa0343440:intron | 45.0% | |
| TGGGTGAAGGATATCTGAGA+TGG | - | chr3_1:1581325-1581344 | None:intergenic | 45.0% | |
| CTCACAAAGATGTGAGTTGC+CGG | + | chr3_1:1581552-1581571 | Msa0343440:intron | 45.0% | |
| AGGAAAAGGTGGAACATCAG+TGG | + | chr3_1:1581669-1581688 | Msa0343440:intron | 45.0% | |
| TGTTGTAGGATGTGGCAAAC+TGG | - | chr3_1:1582402-1582421 | None:intergenic | 45.0% | |
| AGTTTGCCACATCCTACAAC+AGG | + | chr3_1:1582401-1582420 | Msa0343440:CDS | 45.0% | |
| GTTTGCCACATCCTACAACA+GGG | + | chr3_1:1582402-1582421 | Msa0343440:CDS | 45.0% | |
| !!! | CAAATTTTAAAAAATTAAAT+AGG | - | chr3_1:1581380-1581399 | None:intergenic | 5.0% |
| !!! | CAAATTTTAAAAAATTAAAT+AGG | - | chr3_1:1581380-1581399 | None:intergenic | 5.0% |
| TGTATTGCAGCTTGCACTGG+TGG | + | chr3_1:1581230-1581249 | Msa0343440:intron | 50.0% | |
| TTCAGGTGGTAAGGCAGCAT+GGG | - | chr3_1:1581259-1581278 | None:intergenic | 50.0% | |
| ATTCAGGTGGTAAGGCAGCA+TGG | - | chr3_1:1581260-1581279 | None:intergenic | 50.0% | |
| GGTGGAACATCAGTGGATGA+TGG | + | chr3_1:1581676-1581695 | Msa0343440:CDS | 50.0% | |
| GAGGCAAGAATGTTGGTCCA+TGG | - | chr3_1:1581879-1581898 | None:intergenic | 50.0% | |
| ATGGAATTAGCAACGTCGCG+AGG | - | chr3_1:1581898-1581917 | None:intergenic | 50.0% | |
| CTCCATCAAGCAAGGATCGA+CGG | + | chr3_1:1581960-1581979 | Msa0343440:CDS | 50.0% | |
| TTCCGTCGATCCTTGCTTGA+TGG | - | chr3_1:1581965-1581984 | None:intergenic | 50.0% | |
| GTGTACTCTTTGCCTCTGGA+AGG | + | chr3_1:1582267-1582286 | Msa0343440:CDS | 50.0% | |
| CTTGACCCTGTTGTAGGATG+TGG | - | chr3_1:1582410-1582429 | None:intergenic | 50.0% | |
| TGTATTGCAGCTTGCACTGG+TGG | + | chr3_1:1581230-1581249 | Msa0343440:intron | 50.0% | |
| TTCAGGTGGTAAGGCAGCAT+GGG | - | chr3_1:1581259-1581278 | None:intergenic | 50.0% | |
| ATTCAGGTGGTAAGGCAGCA+TGG | - | chr3_1:1581260-1581279 | None:intergenic | 50.0% | |
| GGTGGAACATCAGTGGATGA+TGG | + | chr3_1:1581676-1581695 | Msa0343440:CDS | 50.0% | |
| GAGGCAAGAATGTTGGTCCA+TGG | - | chr3_1:1581879-1581898 | None:intergenic | 50.0% | |
| ATGGAATTAGCAACGTCGCG+AGG | - | chr3_1:1581898-1581917 | None:intergenic | 50.0% | |
| CTCCATCAAGCAAGGATCGA+CGG | + | chr3_1:1581960-1581979 | Msa0343440:CDS | 50.0% | |
| TTCCGTCGATCCTTGCTTGA+TGG | - | chr3_1:1581965-1581984 | None:intergenic | 50.0% | |
| GTGTACTCTTTGCCTCTGGA+AGG | + | chr3_1:1582267-1582286 | Msa0343440:CDS | 50.0% | |
| CTTGACCCTGTTGTAGGATG+TGG | - | chr3_1:1582410-1582429 | None:intergenic | 50.0% | |
| ACGTCGCGAGGCAAGAATGT+TGG | - | chr3_1:1581886-1581905 | None:intergenic | 55.0% | |
| !! | TTGCCTCTGGAAGGTGCTGA+TGG | + | chr3_1:1582276-1582295 | Msa0343440:CDS | 55.0% |
| CTTCCATCAGCACCTTCCAG+AGG | - | chr3_1:1582282-1582301 | None:intergenic | 55.0% | |
| ACGTCGCGAGGCAAGAATGT+TGG | - | chr3_1:1581886-1581905 | None:intergenic | 55.0% | |
| !! | TTGCCTCTGGAAGGTGCTGA+TGG | + | chr3_1:1582276-1582295 | Msa0343440:CDS | 55.0% |
| CTTCCATCAGCACCTTCCAG+AGG | - | chr3_1:1582282-1582301 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1581074 | 1582449 | 1581074 | ID=Msa0343440;Name=Msa0343440 |
| chr3_1 | mRNA | 1581074 | 1582449 | 1581074 | ID=Msa0343440-mRNA-1;Parent=Msa0343440;Name=Msa0343440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.5|0.66|3|0|319 |
| chr3_1 | exon | 1581074 | 1581148 | 1581074 | ID=Msa0343440-mRNA-1:exon:499;Parent=Msa0343440-mRNA-1 |
| chr3_1 | exon | 1581240 | 1581345 | 1581240 | ID=Msa0343440-mRNA-1:exon:500;Parent=Msa0343440-mRNA-1 |
| chr3_1 | exon | 1581671 | 1582449 | 1581671 | ID=Msa0343440-mRNA-1:exon:501;Parent=Msa0343440-mRNA-1 |
| chr3_1 | CDS | 1581074 | 1581148 | 1581074 | ID=Msa0343440-mRNA-1:cds;Parent=Msa0343440-mRNA-1 |
| chr3_1 | CDS | 1581240 | 1581345 | 1581240 | ID=Msa0343440-mRNA-1:cds;Parent=Msa0343440-mRNA-1 |
| chr3_1 | CDS | 1581671 | 1582449 | 1581671 | ID=Msa0343440-mRNA-1:cds;Parent=Msa0343440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
