Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057290 | XP_039687687.1 | 91.054 | 313 | 22 | 1 | 1 | 307 | 1 | 313 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057290 | sp|Q08298|RD22_ARATH | 53.586 | 237 | 103 | 5 | 75 | 306 | 157 | 391 | 7.42e-81 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057290 | G7I4D1 | 91.054 | 313 | 22 | 1 | 1 | 307 | 1 | 313 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008310 | Msa0057290 | 0.848003 | 8.084524e-60 | -8.615850e-47 |
| Msa0015120 | Msa0057290 | 0.801933 | 7.125491e-49 | -8.615850e-47 |
| Msa0048000 | Msa0057290 | 0.810391 | 1.179770e-50 | -8.615850e-47 |
| Msa0057290 | Msa0140860 | 0.818531 | 1.867514e-52 | -8.615850e-47 |
| Msa0057290 | Msa0213040 | 0.809313 | 2.013170e-50 | -8.615850e-47 |
| Msa0057290 | Msa0253340 | 0.800884 | 1.168995e-48 | -8.615850e-47 |
| Msa0057290 | Msa0260810 | 0.807388 | 5.179605e-50 | -8.615850e-47 |
| Msa0057290 | Msa0292170 | 0.806360 | 8.543738e-50 | -8.615850e-47 |
| Msa0057290 | Msa0326520 | 0.802628 | 5.126920e-49 | -8.615850e-47 |
| Msa0057290 | Msa0343440 | 0.919570 | 3.815239e-87 | -8.615850e-47 |
| Msa0057290 | Msa0484780 | 0.851494 | 8.558731e-61 | -8.615850e-47 |
| Msa0057290 | Msa0512870 | 0.803237 | 3.836238e-49 | -8.615850e-47 |
| Msa0057290 | Msa0512900 | 0.806364 | 8.526818e-50 | -8.615850e-47 |
| Msa0057290 | Msa0523460 | 0.801807 | 7.562961e-49 | -8.615850e-47 |
| Msa0057290 | Msa0626220 | 0.806790 | 6.932061e-50 | -8.615850e-47 |
| Msa0057290 | Msa0693380 | 0.819265 | 1.272080e-52 | -8.615850e-47 |
| Msa0057290 | Msa0721280 | 0.812751 | 3.620947e-51 | -8.615850e-47 |
| Msa0057290 | Msa0767220 | 0.802254 | 6.120238e-49 | -8.615850e-47 |
| Msa0057290 | Msa0824660 | 0.809431 | 1.898883e-50 | -8.615850e-47 |
| Msa0057290 | Msa1082500 | 0.835571 | 1.553246e-56 | -8.615850e-47 |
| Msa0057290 | Msa1087980 | 0.820552 | 6.458943e-53 | -8.615850e-47 |
| Msa0057290 | Msa1157740 | 0.800352 | 1.500636e-48 | -8.615850e-47 |
| Msa0057290 | Msa1306850 | 0.802218 | 6.227450e-49 | -8.615850e-47 |
| Msa0057290 | Msa1348880 | 0.808910 | 2.455893e-50 | -8.615850e-47 |
| Msa0057290 | Msa1357890 | 0.813572 | 2.391383e-51 | -8.615850e-47 |
| Msa0057290 | Msa1398090 | 0.812359 | 4.411285e-51 | -8.615850e-47 |
| Msa0057290 | Msa1404540 | 0.807238 | 5.572356e-50 | -8.615850e-47 |
| Msa0057290 | Msa1431060 | 0.806202 | 9.223594e-50 | -8.615850e-47 |
| Msa0057290 | Msa1440940 | 0.803517 | 3.356636e-49 | -8.615850e-47 |
| Msa0057290 | Msa1457430 | 0.805152 | 1.532626e-49 | -8.615850e-47 |
| Msa0057290 | Msa1462070 | 0.807276 | 5.470025e-50 | -8.615850e-47 |
| Msa0057290 | Msa1462930 | 0.807708 | 4.430238e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057290 | MtrunA17_Chr1g0147241 | 91.054 | 313 | 22 | 1 | 1 | 307 | 1 | 313 | 0.0 | 593 |
| Msa0057290 | MtrunA17_Chr1g0147261 | 75.244 | 307 | 69 | 1 | 1 | 307 | 1 | 300 | 3.01e-173 | 481 |
| Msa0057290 | MtrunA17_Chr1g0147271 | 57.922 | 385 | 84 | 6 | 1 | 307 | 1 | 385 | 1.89e-144 | 412 |
| Msa0057290 | MtrunA17_Chr1g0146631 | 62.997 | 327 | 99 | 6 | 1 | 307 | 1 | 325 | 9.93e-141 | 400 |
| Msa0057290 | MtrunA17_Chr1g0147331 | 59.347 | 337 | 95 | 6 | 1 | 307 | 1 | 325 | 1.96e-135 | 386 |
| Msa0057290 | MtrunA17_Chr1g0147311 | 60.606 | 330 | 107 | 7 | 1 | 307 | 27 | 356 | 1.24e-133 | 383 |
| Msa0057290 | MtrunA17_Chr1g0147291 | 65.299 | 268 | 76 | 4 | 55 | 307 | 2 | 267 | 2.38e-122 | 351 |
| Msa0057290 | MtrunA17_Chr1g0147251 | 69.672 | 244 | 70 | 2 | 64 | 307 | 4 | 243 | 9.16e-120 | 343 |
| Msa0057290 | MtrunA17_Chr1g0147301 | 70.000 | 240 | 66 | 4 | 74 | 307 | 46 | 285 | 1.77e-119 | 344 |
| Msa0057290 | MtrunA17_Chr1g0147321 | 71.875 | 224 | 59 | 3 | 83 | 304 | 14 | 235 | 2.77e-117 | 338 |
| Msa0057290 | MtrunA17_Chr3g0139431 | 53.894 | 321 | 129 | 9 | 1 | 304 | 1 | 319 | 3.52e-114 | 332 |
| Msa0057290 | MtrunA17_Chr4g0034821 | 39.640 | 222 | 128 | 4 | 92 | 307 | 71 | 292 | 3.76e-52 | 173 |
| Msa0057290 | MtrunA17_Chr3g0138231 | 38.889 | 234 | 137 | 3 | 80 | 307 | 34 | 267 | 4.66e-52 | 172 |
| Msa0057290 | MtrunA17_Chr3g0144451 | 38.288 | 222 | 131 | 3 | 92 | 307 | 55 | 276 | 3.40e-50 | 167 |
| Msa0057290 | MtrunA17_Chr3g0144421 | 39.908 | 218 | 124 | 4 | 93 | 304 | 84 | 300 | 7.85e-49 | 165 |
| Msa0057290 | MtrunA17_Chr3g0144411 | 38.710 | 217 | 125 | 4 | 93 | 304 | 323 | 536 | 2.14e-42 | 153 |
| Msa0057290 | MtrunA17_Chr3g0144391 | 38.249 | 217 | 126 | 4 | 93 | 304 | 290 | 503 | 6.26e-42 | 151 |
| Msa0057290 | MtrunA17_Chr2g0318901 | 31.922 | 307 | 156 | 13 | 1 | 304 | 1 | 257 | 6.57e-40 | 140 |
| Msa0057290 | MtrunA17_Chr8g0365361 | 37.963 | 216 | 123 | 5 | 96 | 304 | 181 | 392 | 1.42e-39 | 143 |
| Msa0057290 | MtrunA17_Chr8g0355861 | 32.131 | 305 | 159 | 11 | 1 | 304 | 1 | 258 | 2.35e-39 | 139 |
| Msa0057290 | MtrunA17_Chr4g0034451 | 32.927 | 246 | 152 | 7 | 69 | 304 | 282 | 524 | 2.51e-38 | 142 |
| Msa0057290 | MtrunA17_Chr2g0318871 | 30.619 | 307 | 160 | 11 | 1 | 304 | 1 | 257 | 6.52e-37 | 132 |
| Msa0057290 | MtrunA17_Chr4g0034731 | 34.597 | 211 | 129 | 6 | 101 | 304 | 222 | 430 | 2.55e-36 | 135 |
| Msa0057290 | MtrunA17_Chr8g0365401 | 36.574 | 216 | 126 | 5 | 96 | 304 | 412 | 623 | 9.50e-36 | 135 |
| Msa0057290 | MtrunA17_Chr5g0413591 | 33.953 | 215 | 133 | 5 | 96 | 304 | 415 | 626 | 4.00e-34 | 131 |
| Msa0057290 | MtrunA17_Chr1g0147231 | 73.494 | 83 | 21 | 1 | 80 | 161 | 48 | 130 | 8.36e-34 | 121 |
| Msa0057290 | MtrunA17_Chr8g0355321 | 26.567 | 335 | 162 | 8 | 14 | 304 | 6 | 300 | 1.19e-33 | 125 |
| Msa0057290 | MtrunA17_Chr4g0034721 | 34.737 | 190 | 117 | 4 | 122 | 304 | 385 | 574 | 1.88e-33 | 129 |
| Msa0057290 | MtrunA17_Chr8g0355311 | 43.262 | 141 | 75 | 4 | 164 | 304 | 53 | 188 | 3.37e-33 | 121 |
| Msa0057290 | MtrunA17_Chr4g0034691 | 34.737 | 190 | 117 | 4 | 122 | 304 | 517 | 706 | 5.15e-33 | 128 |
| Msa0057290 | MtrunA17_Chr8g0365381 | 35.023 | 217 | 132 | 5 | 96 | 306 | 429 | 642 | 1.78e-32 | 126 |
| Msa0057290 | MtrunA17_Chr8g0355331 | 44.030 | 134 | 70 | 4 | 171 | 304 | 291 | 419 | 4.54e-31 | 120 |
| Msa0057290 | MtrunA17_Chr2g0318931 | 28.025 | 314 | 154 | 15 | 6 | 304 | 12 | 268 | 6.29e-31 | 117 |
| Msa0057290 | MtrunA17_Chr1g0168781 | 31.090 | 312 | 152 | 13 | 1 | 304 | 1 | 257 | 6.64e-31 | 117 |
| Msa0057290 | MtrunA17_Chr3g0117791 | 36.316 | 190 | 112 | 5 | 121 | 304 | 438 | 624 | 7.60e-31 | 122 |
| Msa0057290 | MtrunA17_Chr6g0485051 | 32.143 | 196 | 125 | 5 | 120 | 307 | 11 | 206 | 9.34e-31 | 115 |
| Msa0057290 | MtrunA17_Chr8g0355841 | 45.522 | 134 | 68 | 4 | 171 | 304 | 379 | 507 | 2.38e-30 | 119 |
| Msa0057290 | MtrunA17_Chr8g0355871 | 31.718 | 227 | 118 | 8 | 88 | 305 | 23 | 221 | 4.07e-29 | 111 |
| Msa0057290 | MtrunA17_Chr8g0355831 | 44.030 | 134 | 70 | 3 | 171 | 304 | 221 | 349 | 5.65e-28 | 111 |
| Msa0057290 | MtrunA17_Chr5g0412981 | 28.767 | 219 | 143 | 5 | 94 | 304 | 195 | 408 | 3.08e-24 | 101 |
| Msa0057290 | MtrunA17_Chr5g0412981 | 29.016 | 193 | 118 | 7 | 110 | 292 | 1 | 184 | 8.87e-18 | 83.2 |
| Msa0057290 | MtrunA17_Chr5g0412991 | 28.767 | 219 | 143 | 5 | 94 | 304 | 195 | 408 | 3.60e-24 | 101 |
| Msa0057290 | MtrunA17_Chr5g0412991 | 28.497 | 193 | 119 | 7 | 110 | 292 | 1 | 184 | 2.06e-17 | 82.0 |
| Msa0057290 | MtrunA17_Chr4g0076231 | 34.416 | 154 | 97 | 4 | 155 | 304 | 3 | 156 | 4.59e-23 | 93.2 |
| Msa0057290 | MtrunA17_Chr5g0412951 | 28.780 | 205 | 131 | 6 | 110 | 304 | 8 | 207 | 1.50e-20 | 87.8 |
| Msa0057290 | MtrunA17_Chr8g0371951 | 39.726 | 73 | 40 | 2 | 226 | 295 | 16 | 87 | 6.98e-14 | 66.2 |
| Msa0057290 | MtrunA17_Chr5g0413021 | 29.545 | 132 | 81 | 4 | 180 | 304 | 1 | 127 | 8.02e-14 | 67.4 |
| Msa0057290 | MtrunA17_Chr4g0034051 | 36.000 | 75 | 45 | 3 | 233 | 304 | 3 | 77 | 1.65e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057290 | AT5G25610.1 | 53.586 | 237 | 103 | 5 | 75 | 306 | 157 | 391 | 7.54e-82 | 253 |
| Msa0057290 | AT1G49320.1 | 36.087 | 230 | 136 | 5 | 89 | 307 | 51 | 280 | 1.12e-44 | 154 |
| Msa0057290 | AT1G60390.1 | 36.239 | 218 | 124 | 6 | 96 | 304 | 409 | 620 | 8.24e-34 | 130 |
| Msa0057290 | AT1G70370.2 | 34.579 | 214 | 133 | 3 | 96 | 304 | 411 | 622 | 1.73e-32 | 127 |
| Msa0057290 | AT1G70370.1 | 34.579 | 214 | 133 | 3 | 96 | 304 | 411 | 622 | 1.73e-32 | 127 |
| Msa0057290 | AT1G23760.1 | 33.645 | 214 | 135 | 4 | 96 | 304 | 407 | 618 | 3.18e-30 | 120 |
Find 62 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGGCTATGTTCTTAT+TGG | 0.163708 | 1_2:-13266739 | Msa0057290:CDS |
| TCCACTTTGTTTGATGAAAA+TGG | 0.206491 | 1_2:+13266618 | None:intergenic |
| ATTACATGATAATCGAAATT+TGG | 0.215285 | 1_2:-13266754 | Msa0057290:CDS |
| TTGGACTTCCAATACAATTC+AGG | 0.287171 | 1_2:+13267264 | None:intergenic |
| ACTATTTCAACAGAAGTAAA+TGG | 0.306242 | 1_2:-13266423 | Msa0057290:CDS |
| AGCAAACAGAGTGAAGAAAA+TGG | 0.310868 | 1_2:-13266373 | Msa0057290:CDS |
| TTCCGTCGATCCTTGCTTGA+TGG | 0.311634 | 1_2:+13266575 | None:intergenic |
| CAAGTGCTCAAAGTTCAAAA+AGG | 0.316009 | 1_2:-13266168 | Msa0057290:CDS |
| GATGGAAAAGGCAGTGTTAA+TGG | 0.322738 | 1_2:-13266843 | Msa0057290:CDS |
| TGTGACATCATTGGAATCTA+TGG | 0.323363 | 1_2:-13266484 | Msa0057290:CDS |
| ACTTGAAAAGCCAAATGTTT+AGG | 0.337232 | 1_2:+13266186 | None:intergenic |
| AATTTGAGTTGTGGGAAGTT+TGG | 0.355507 | 1_2:+13267245 | None:intergenic |
| GGCTATGTTCTTATTGGAAA+AGG | 0.370735 | 1_2:-13266733 | Msa0057290:CDS |
| GAAAATGGGAGAGAACAATT+TGG | 0.374965 | 1_2:-13266358 | Msa0057290:CDS |
| TACAACAGGGTCAAGTTGTT+TGG | 0.384712 | 1_2:-13266122 | Msa0057290:CDS |
| CCTTACCACCTGAATTGTAT+TGG | 0.385889 | 1_2:-13267272 | Msa0057290:CDS |
| ACAATGGAGTCCTAAACATT+TGG | 0.392896 | 1_2:-13266196 | Msa0057290:CDS |
| TGACAGTAAAACACTGCATA+AGG | 0.401155 | 1_2:+13266312 | None:intergenic |
| AAAGCTTTGTGTGACATCAT+TGG | 0.404983 | 1_2:-13266493 | Msa0057290:CDS |
| AAACAACTTGACCCTGTTGT+AGG | 0.414196 | 1_2:+13266124 | None:intergenic |
| AGTTTGCCACATCCTACAAC+AGG | 0.427433 | 1_2:-13266136 | Msa0057290:CDS |
| TTGCCTCTGGAAGGTGCTGA+TGG | 0.457330 | 1_2:-13266261 | Msa0057290:CDS |
| GATTTCACTACTTCGAAACT+TGG | 0.458312 | 1_2:-13266459 | Msa0057290:CDS |
| TGTTGTAGGATGTGGCAAAC+TGG | 0.462952 | 1_2:+13266138 | None:intergenic |
| CATAAGGGTAATTCCGTTTG+TGG | 0.469316 | 1_2:+13266328 | None:intergenic |
| GCAAACAGAGTGAAGAAAAT+GGG | 0.469711 | 1_2:-13266372 | Msa0057290:CDS |
| ATTTGGTTGTGTGCCACAAA+CGG | 0.476684 | 1_2:-13266341 | Msa0057290:CDS |
| TAAAGTGTACTCTTTGCCTC+TGG | 0.484430 | 1_2:-13266274 | Msa0057290:CDS |
| GCTTGATGGAGAAGTAGTTA+AGG | 0.487051 | 1_2:+13266589 | None:intergenic |
| TTTGTTTGATGAAAATGGTA+TGG | 0.490197 | 1_2:+13266623 | None:intergenic |
| TGAGAGAGATAAAGATGGAT+AGG | 0.504475 | 1_2:+13267443 | None:intergenic |
| GAGATAAAGATGGATAGGTA+AGG | 0.508341 | 1_2:+13267448 | None:intergenic |
| CCAATACAATTCAGGTGGTA+AGG | 0.508538 | 1_2:+13267272 | None:intergenic |
| ATAAGTGAGTGTGAAGCATA+TGG | 0.510314 | 1_2:-13266531 | Msa0057290:CDS |
| TTCAGGTGGTAAGGCAGCAT+GGG | 0.525536 | 1_2:+13267281 | None:intergenic |
| GACAGTAAAACACTGCATAA+GGG | 0.527238 | 1_2:+13266313 | None:intergenic |
| ACAGAAGTAAATGGAGAAAG+TGG | 0.530769 | 1_2:-13266414 | Msa0057290:CDS |
| ATTCAGGTGGTAAGGCAGCA+TGG | 0.531131 | 1_2:+13267280 | None:intergenic |
| TTGGAAAAGGACTTGCATCA+TGG | 0.533727 | 1_2:-13266720 | Msa0057290:CDS |
| TGTTGTATTGCAGCTTGCAC+TGG | 0.537151 | 1_2:-13267310 | Msa0057290:intron |
| GGTGGAACATCAGTGGATGA+TGG | 0.538786 | 1_2:-13266861 | Msa0057290:CDS |
| TGTGAAGCATATGGTATCAA+AGG | 0.543560 | 1_2:-13266522 | Msa0057290:CDS |
| TACATTGAGAGAGATAAAGA+TGG | 0.548284 | 1_2:+13267438 | None:intergenic |
| ACATCAGTGGATGATGGAAA+AGG | 0.549870 | 1_2:-13266855 | Msa0057290:CDS |
| CTCCATCAAGCAAGGATCGA+CGG | 0.567679 | 1_2:-13266577 | Msa0057290:CDS |
| TTTCAAACTGTAGGAAAAGG+TGG | 0.576334 | 1_2:-13266879 | Msa0057290:intron |
| TAGTCTACTAACTTGGGTGA+AGG | 0.576755 | 1_2:+13267202 | None:intergenic |
| GACTTCCAATACAATTCAGG+TGG | 0.581844 | 1_2:+13267267 | None:intergenic |
| TGGGTGAAGGATATCTGAGA+TGG | 0.592227 | 1_2:+13267215 | None:intergenic |
| GTGTACTCTTTGCCTCTGGA+AGG | 0.594455 | 1_2:-13266270 | Msa0057290:CDS |
| AACTACTTCTCCATCAAGCA+AGG | 0.596765 | 1_2:-13266585 | Msa0057290:CDS |
| CTTGACCCTGTTGTAGGATG+TGG | 0.602810 | 1_2:+13266130 | None:intergenic |
| GAGGCAAGAATGTTGGTCCA+TGG | 0.603479 | 1_2:+13266661 | None:intergenic |
| ATGGAATTAGCAACGTCGCG+AGG | 0.606572 | 1_2:+13266642 | None:intergenic |
| TGTATTGCAGCTTGCACTGG+TGG | 0.618212 | 1_2:-13267307 | Msa0057290:intron |
| ACGTCGCGAGGCAAGAATGT+TGG | 0.624134 | 1_2:+13266654 | None:intergenic |
| AGGAAAAGGTGGAACATCAG+TGG | 0.626444 | 1_2:-13266868 | Msa0057290:CDS |
| AGCATATGGTATCAAAGGAG+AGG | 0.627493 | 1_2:-13266517 | Msa0057290:CDS |
| CTTCCATCAGCACCTTCCAG+AGG | 0.659408 | 1_2:+13266258 | None:intergenic |
| TTCACAAAGACATCAGACCA+TGG | 0.689219 | 1_2:-13266678 | Msa0057290:CDS |
| GTCACACTGATACTTCACAA+TGG | 0.703281 | 1_2:-13266212 | Msa0057290:CDS |
| GTTTGCCACATCCTACAACA+GGG | 0.745484 | 1_2:-13266135 | Msa0057290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTACTTTAATGA+TGG | - | chr1_2:13266479-13266498 | Msa0057290:CDS | 10.0% |
| !! | TTTATATTTACTTTAATGAT+GGG | - | chr1_2:13266480-13266499 | Msa0057290:CDS | 10.0% |
| !!! | TTTTATATTTACTTTAATGA+TGG | - | chr1_2:13266479-13266498 | Msa0057290:CDS | 10.0% |
| !! | TTTATATTTACTTTAATGAT+GGG | - | chr1_2:13266480-13266499 | Msa0057290:CDS | 10.0% |
| !! | AAAAAATTAAATAGGAATAG+AGG | + | chr1_2:13266402-13266421 | None:intergenic | 15.0% |
| !!! | TTACATATTTTTTTCTAATG+AGG | + | chr1_2:13266614-13266633 | None:intergenic | 15.0% |
| !!! | GTTTGAAACTTATTTTATTA+AGG | + | chr1_2:13266676-13266695 | None:intergenic | 15.0% |
| !! | TCATTTGCATAAAAATAAAT+TGG | + | chr1_2:13266778-13266797 | None:intergenic | 15.0% |
| !! | AAAAAATTAAATAGGAATAG+AGG | + | chr1_2:13266402-13266421 | None:intergenic | 15.0% |
| !!! | TTACATATTTTTTTCTAATG+AGG | + | chr1_2:13266614-13266633 | None:intergenic | 15.0% |
| !!! | GTTTGAAACTTATTTTATTA+AGG | + | chr1_2:13266676-13266695 | None:intergenic | 15.0% |
| !! | TCATTTGCATAAAAATAAAT+TGG | + | chr1_2:13266778-13266797 | None:intergenic | 15.0% |
| !! | ATGCTAAAAAGGTAATATAT+GGG | + | chr1_2:13266200-13266219 | None:intergenic | 20.0% |
| !! | AATGCTAAAAAGGTAATATA+TGG | + | chr1_2:13266201-13266220 | None:intergenic | 20.0% |
| !! | GAAATGAAATAATGCTAAAA+AGG | + | chr1_2:13266211-13266230 | None:intergenic | 20.0% |
| !!! | TATAATATTTTTTGAGCTTG+AGG | - | chr1_2:13266641-13266660 | Msa0057290:CDS | 20.0% |
| !! | TAAAATAAGTTTCAAACTGT+AGG | - | chr1_2:13266679-13266698 | Msa0057290:CDS | 20.0% |
| !! | ATTACATGATAATCGAAATT+TGG | - | chr1_2:13266813-13266832 | Msa0057290:CDS | 20.0% |
| !! | ATGCTAAAAAGGTAATATAT+GGG | + | chr1_2:13266200-13266219 | None:intergenic | 20.0% |
| !! | AATGCTAAAAAGGTAATATA+TGG | + | chr1_2:13266201-13266220 | None:intergenic | 20.0% |
| !! | GAAATGAAATAATGCTAAAA+AGG | + | chr1_2:13266211-13266230 | None:intergenic | 20.0% |
| !!! | TATAATATTTTTTGAGCTTG+AGG | - | chr1_2:13266641-13266660 | Msa0057290:CDS | 20.0% |
| !! | TAAAATAAGTTTCAAACTGT+AGG | - | chr1_2:13266679-13266698 | Msa0057290:CDS | 20.0% |
| !! | ATTACATGATAATCGAAATT+TGG | - | chr1_2:13266813-13266832 | Msa0057290:CDS | 20.0% |
| ! | TATATCTAGTCTACTAACTT+GGG | + | chr1_2:13266374-13266393 | None:intergenic | 25.0% |
| ! | ATATATCTAGTCTACTAACT+TGG | + | chr1_2:13266375-13266394 | None:intergenic | 25.0% |
| !!! | TGATTCAGTTGGTAAAAATT+AGG | - | chr1_2:13266553-13266572 | Msa0057290:CDS | 25.0% |
| ! | AAATTTGGCTATGTTCTTAT+TGG | - | chr1_2:13266828-13266847 | Msa0057290:CDS | 25.0% |
| ! | TTTGTTTGATGAAAATGGTA+TGG | + | chr1_2:13266947-13266966 | None:intergenic | 25.0% |
| ! | ACTATTTCAACAGAAGTAAA+TGG | - | chr1_2:13267144-13267163 | Msa0057290:intron | 25.0% |
| ! | TATATCTAGTCTACTAACTT+GGG | + | chr1_2:13266374-13266393 | None:intergenic | 25.0% |
| ! | ATATATCTAGTCTACTAACT+TGG | + | chr1_2:13266375-13266394 | None:intergenic | 25.0% |
| !!! | TGATTCAGTTGGTAAAAATT+AGG | - | chr1_2:13266553-13266572 | Msa0057290:CDS | 25.0% |
| ! | AAATTTGGCTATGTTCTTAT+TGG | - | chr1_2:13266828-13266847 | Msa0057290:CDS | 25.0% |
| ! | TTTGTTTGATGAAAATGGTA+TGG | + | chr1_2:13266947-13266966 | None:intergenic | 25.0% |
| ! | ACTATTTCAACAGAAGTAAA+TGG | - | chr1_2:13267144-13267163 | Msa0057290:intron | 25.0% |
| TACATTGAGAGAGATAAAGA+TGG | + | chr1_2:13266132-13266151 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGAATTTGAGTTGT+GGG | + | chr1_2:13266333-13266352 | None:intergenic | 30.0% |
| ATGGGAAACACTAAATTTGA+TGG | - | chr1_2:13266498-13266517 | Msa0057290:CDS | 30.0% | |
| AAGTTTCAAACTGTAGGAAA+AGG | - | chr1_2:13266685-13266704 | Msa0057290:CDS | 30.0% | |
| ! | ACCATTTTCATCAAACAAAG+TGG | - | chr1_2:13266948-13266967 | Msa0057290:intron | 30.0% |
| ! | TCCACTTTGTTTGATGAAAA+TGG | + | chr1_2:13266952-13266971 | None:intergenic | 30.0% |
| ACTTGAAAAGCCAAATGTTT+AGG | + | chr1_2:13267384-13267403 | None:intergenic | 30.0% | |
| TACATTGAGAGAGATAAAGA+TGG | + | chr1_2:13266132-13266151 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGAATTTGAGTTGT+GGG | + | chr1_2:13266333-13266352 | None:intergenic | 30.0% |
| ATGGGAAACACTAAATTTGA+TGG | - | chr1_2:13266498-13266517 | Msa0057290:CDS | 30.0% | |
| AAGTTTCAAACTGTAGGAAA+AGG | - | chr1_2:13266685-13266704 | Msa0057290:CDS | 30.0% | |
| ! | ACCATTTTCATCAAACAAAG+TGG | - | chr1_2:13266948-13266967 | Msa0057290:intron | 30.0% |
| ! | TCCACTTTGTTTGATGAAAA+TGG | + | chr1_2:13266952-13266971 | None:intergenic | 30.0% |
| ACTTGAAAAGCCAAATGTTT+AGG | + | chr1_2:13267384-13267403 | None:intergenic | 30.0% | |
| GAGATAAAGATGGATAGGTA+AGG | + | chr1_2:13266122-13266141 | None:intergenic | 35.0% | |
| TGAGAGAGATAAAGATGGAT+AGG | + | chr1_2:13266127-13266146 | None:intergenic | 35.0% | |
| TTGGACTTCCAATACAATTC+AGG | + | chr1_2:13266306-13266325 | None:intergenic | 35.0% | |
| !! | AATTTGAGTTGTGGGAAGTT+TGG | + | chr1_2:13266325-13266344 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGAATTTGAGTTG+TGG | + | chr1_2:13266334-13266353 | None:intergenic | 35.0% |
| !! | AGGATATCTGAGATGGTTTT+TGG | + | chr1_2:13266348-13266367 | None:intergenic | 35.0% |
| ! | GACGAAAAAGTTGATTCAGT+TGG | - | chr1_2:13266542-13266561 | Msa0057290:CDS | 35.0% |
| ! | TTTTCTAATGAGGTTTGCAC+CGG | + | chr1_2:13266604-13266623 | None:intergenic | 35.0% |
| TTTCAAACTGTAGGAAAAGG+TGG | - | chr1_2:13266688-13266707 | Msa0057290:CDS | 35.0% | |
| GCAGTGTTAATGGAAAAACA+AGG | - | chr1_2:13266734-13266753 | Msa0057290:CDS | 35.0% | |
| GGCTATGTTCTTATTGGAAA+AGG | - | chr1_2:13266834-13266853 | Msa0057290:CDS | 35.0% | |
| ATAAGTGAGTGTGAAGCATA+TGG | - | chr1_2:13267036-13267055 | Msa0057290:intron | 35.0% | |
| TGTGAAGCATATGGTATCAA+AGG | - | chr1_2:13267045-13267064 | Msa0057290:intron | 35.0% | |
| ! | AAAGCTTTGTGTGACATCAT+TGG | - | chr1_2:13267074-13267093 | Msa0057290:intron | 35.0% |
| TGTGACATCATTGGAATCTA+TGG | - | chr1_2:13267083-13267102 | Msa0057290:intron | 35.0% | |
| GATTTCACTACTTCGAAACT+TGG | - | chr1_2:13267108-13267127 | Msa0057290:intron | 35.0% | |
| ACAGAAGTAAATGGAGAAAG+TGG | - | chr1_2:13267153-13267172 | Msa0057290:intron | 35.0% | |
| AGCAAACAGAGTGAAGAAAA+TGG | - | chr1_2:13267194-13267213 | Msa0057290:intron | 35.0% | |
| GCAAACAGAGTGAAGAAAAT+GGG | - | chr1_2:13267195-13267214 | Msa0057290:intron | 35.0% | |
| GAAAATGGGAGAGAACAATT+TGG | - | chr1_2:13267209-13267228 | Msa0057290:intron | 35.0% | |
| GACAGTAAAACACTGCATAA+GGG | + | chr1_2:13267257-13267276 | None:intergenic | 35.0% | |
| TGACAGTAAAACACTGCATA+AGG | + | chr1_2:13267258-13267277 | None:intergenic | 35.0% | |
| ACAATGGAGTCCTAAACATT+TGG | - | chr1_2:13267371-13267390 | Msa0057290:intron | 35.0% | |
| CAAGTGCTCAAAGTTCAAAA+AGG | - | chr1_2:13267399-13267418 | Msa0057290:intron | 35.0% | |
| GAGATAAAGATGGATAGGTA+AGG | + | chr1_2:13266122-13266141 | None:intergenic | 35.0% | |
| TGAGAGAGATAAAGATGGAT+AGG | + | chr1_2:13266127-13266146 | None:intergenic | 35.0% | |
| TTGGACTTCCAATACAATTC+AGG | + | chr1_2:13266306-13266325 | None:intergenic | 35.0% | |
| !! | AATTTGAGTTGTGGGAAGTT+TGG | + | chr1_2:13266325-13266344 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGAATTTGAGTTG+TGG | + | chr1_2:13266334-13266353 | None:intergenic | 35.0% |
| !! | AGGATATCTGAGATGGTTTT+TGG | + | chr1_2:13266348-13266367 | None:intergenic | 35.0% |
| ! | GACGAAAAAGTTGATTCAGT+TGG | - | chr1_2:13266542-13266561 | Msa0057290:CDS | 35.0% |
| ! | TTTTCTAATGAGGTTTGCAC+CGG | + | chr1_2:13266604-13266623 | None:intergenic | 35.0% |
| TTTCAAACTGTAGGAAAAGG+TGG | - | chr1_2:13266688-13266707 | Msa0057290:CDS | 35.0% | |
| GCAGTGTTAATGGAAAAACA+AGG | - | chr1_2:13266734-13266753 | Msa0057290:CDS | 35.0% | |
| GGCTATGTTCTTATTGGAAA+AGG | - | chr1_2:13266834-13266853 | Msa0057290:CDS | 35.0% | |
| ATAAGTGAGTGTGAAGCATA+TGG | - | chr1_2:13267036-13267055 | Msa0057290:intron | 35.0% | |
| TGTGAAGCATATGGTATCAA+AGG | - | chr1_2:13267045-13267064 | Msa0057290:intron | 35.0% | |
| ! | AAAGCTTTGTGTGACATCAT+TGG | - | chr1_2:13267074-13267093 | Msa0057290:intron | 35.0% |
| TGTGACATCATTGGAATCTA+TGG | - | chr1_2:13267083-13267102 | Msa0057290:intron | 35.0% | |
| GATTTCACTACTTCGAAACT+TGG | - | chr1_2:13267108-13267127 | Msa0057290:intron | 35.0% | |
| ACAGAAGTAAATGGAGAAAG+TGG | - | chr1_2:13267153-13267172 | Msa0057290:intron | 35.0% | |
| AGCAAACAGAGTGAAGAAAA+TGG | - | chr1_2:13267194-13267213 | Msa0057290:intron | 35.0% | |
| GCAAACAGAGTGAAGAAAAT+GGG | - | chr1_2:13267195-13267214 | Msa0057290:intron | 35.0% | |
| GAAAATGGGAGAGAACAATT+TGG | - | chr1_2:13267209-13267228 | Msa0057290:intron | 35.0% | |
| GACAGTAAAACACTGCATAA+GGG | + | chr1_2:13267257-13267276 | None:intergenic | 35.0% | |
| TGACAGTAAAACACTGCATA+AGG | + | chr1_2:13267258-13267277 | None:intergenic | 35.0% | |
| ACAATGGAGTCCTAAACATT+TGG | - | chr1_2:13267371-13267390 | Msa0057290:intron | 35.0% | |
| CAAGTGCTCAAAGTTCAAAA+AGG | - | chr1_2:13267399-13267418 | Msa0057290:intron | 35.0% | |
| CCAATACAATTCAGGTGGTA+AGG | + | chr1_2:13266298-13266317 | None:intergenic | 40.0% | |
| CCTTACCACCTGAATTGTAT+TGG | - | chr1_2:13266295-13266314 | Msa0057290:CDS | 40.0% | |
| GACTTCCAATACAATTCAGG+TGG | + | chr1_2:13266303-13266322 | None:intergenic | 40.0% | |
| TAGTCTACTAACTTGGGTGA+AGG | + | chr1_2:13266368-13266387 | None:intergenic | 40.0% | |
| !! | ACATCAGTGGATGATGGAAA+AGG | - | chr1_2:13266712-13266731 | Msa0057290:CDS | 40.0% |
| GATGGAAAAGGCAGTGTTAA+TGG | - | chr1_2:13266724-13266743 | Msa0057290:CDS | 40.0% | |
| TTGGAAAAGGACTTGCATCA+TGG | - | chr1_2:13266847-13266866 | Msa0057290:CDS | 40.0% | |
| TTCACAAAGACATCAGACCA+TGG | - | chr1_2:13266889-13266908 | Msa0057290:intron | 40.0% | |
| GCTTGATGGAGAAGTAGTTA+AGG | + | chr1_2:13266981-13267000 | None:intergenic | 40.0% | |
| AACTACTTCTCCATCAAGCA+AGG | - | chr1_2:13266982-13267001 | Msa0057290:intron | 40.0% | |
| AGCATATGGTATCAAAGGAG+AGG | - | chr1_2:13267050-13267069 | Msa0057290:intron | 40.0% | |
| ATTTGGTTGTGTGCCACAAA+CGG | - | chr1_2:13267226-13267245 | Msa0057290:CDS | 40.0% | |
| CATAAGGGTAATTCCGTTTG+TGG | + | chr1_2:13267242-13267261 | None:intergenic | 40.0% | |
| TAAAGTGTACTCTTTGCCTC+TGG | - | chr1_2:13267293-13267312 | Msa0057290:CDS | 40.0% | |
| GTCACACTGATACTTCACAA+TGG | - | chr1_2:13267355-13267374 | Msa0057290:intron | 40.0% | |
| AAACAACTTGACCCTGTTGT+AGG | + | chr1_2:13267446-13267465 | None:intergenic | 40.0% | |
| ! | TACAACAGGGTCAAGTTGTT+TGG | - | chr1_2:13267445-13267464 | Msa0057290:CDS | 40.0% |
| CCAATACAATTCAGGTGGTA+AGG | + | chr1_2:13266298-13266317 | None:intergenic | 40.0% | |
| CCTTACCACCTGAATTGTAT+TGG | - | chr1_2:13266295-13266314 | Msa0057290:CDS | 40.0% | |
| GACTTCCAATACAATTCAGG+TGG | + | chr1_2:13266303-13266322 | None:intergenic | 40.0% | |
| TAGTCTACTAACTTGGGTGA+AGG | + | chr1_2:13266368-13266387 | None:intergenic | 40.0% | |
| !! | ACATCAGTGGATGATGGAAA+AGG | - | chr1_2:13266712-13266731 | Msa0057290:CDS | 40.0% |
| GATGGAAAAGGCAGTGTTAA+TGG | - | chr1_2:13266724-13266743 | Msa0057290:CDS | 40.0% | |
| TTGGAAAAGGACTTGCATCA+TGG | - | chr1_2:13266847-13266866 | Msa0057290:CDS | 40.0% | |
| TTCACAAAGACATCAGACCA+TGG | - | chr1_2:13266889-13266908 | Msa0057290:intron | 40.0% | |
| GCTTGATGGAGAAGTAGTTA+AGG | + | chr1_2:13266981-13267000 | None:intergenic | 40.0% | |
| AACTACTTCTCCATCAAGCA+AGG | - | chr1_2:13266982-13267001 | Msa0057290:intron | 40.0% | |
| AGCATATGGTATCAAAGGAG+AGG | - | chr1_2:13267050-13267069 | Msa0057290:intron | 40.0% | |
| ATTTGGTTGTGTGCCACAAA+CGG | - | chr1_2:13267226-13267245 | Msa0057290:CDS | 40.0% | |
| CATAAGGGTAATTCCGTTTG+TGG | + | chr1_2:13267242-13267261 | None:intergenic | 40.0% | |
| TAAAGTGTACTCTTTGCCTC+TGG | - | chr1_2:13267293-13267312 | Msa0057290:CDS | 40.0% | |
| GTCACACTGATACTTCACAA+TGG | - | chr1_2:13267355-13267374 | Msa0057290:intron | 40.0% | |
| AAACAACTTGACCCTGTTGT+AGG | + | chr1_2:13267446-13267465 | None:intergenic | 40.0% | |
| ! | TACAACAGGGTCAAGTTGTT+TGG | - | chr1_2:13267445-13267464 | Msa0057290:CDS | 40.0% |
| TGTTGTATTGCAGCTTGCAC+TGG | - | chr1_2:13266257-13266276 | Msa0057290:CDS | 45.0% | |
| TGGGTGAAGGATATCTGAGA+TGG | + | chr1_2:13266355-13266374 | None:intergenic | 45.0% | |
| CTCACAAAGATGTGAGTTGC+CGG | - | chr1_2:13266582-13266601 | Msa0057290:CDS | 45.0% | |
| AGGAAAAGGTGGAACATCAG+TGG | - | chr1_2:13266699-13266718 | Msa0057290:CDS | 45.0% | |
| TGTTGTAGGATGTGGCAAAC+TGG | + | chr1_2:13267432-13267451 | None:intergenic | 45.0% | |
| AGTTTGCCACATCCTACAAC+AGG | - | chr1_2:13267431-13267450 | Msa0057290:intron | 45.0% | |
| GTTTGCCACATCCTACAACA+GGG | - | chr1_2:13267432-13267451 | Msa0057290:intron | 45.0% | |
| TGTTGTATTGCAGCTTGCAC+TGG | - | chr1_2:13266257-13266276 | Msa0057290:CDS | 45.0% | |
| TGGGTGAAGGATATCTGAGA+TGG | + | chr1_2:13266355-13266374 | None:intergenic | 45.0% | |
| CTCACAAAGATGTGAGTTGC+CGG | - | chr1_2:13266582-13266601 | Msa0057290:CDS | 45.0% | |
| AGGAAAAGGTGGAACATCAG+TGG | - | chr1_2:13266699-13266718 | Msa0057290:CDS | 45.0% | |
| TGTTGTAGGATGTGGCAAAC+TGG | + | chr1_2:13267432-13267451 | None:intergenic | 45.0% | |
| AGTTTGCCACATCCTACAAC+AGG | - | chr1_2:13267431-13267450 | Msa0057290:intron | 45.0% | |
| GTTTGCCACATCCTACAACA+GGG | - | chr1_2:13267432-13267451 | Msa0057290:intron | 45.0% | |
| !!! | CAAATTTTAAAAAATTAAAT+AGG | + | chr1_2:13266410-13266429 | None:intergenic | 5.0% |
| !!! | CAAATTTTAAAAAATTAAAT+AGG | + | chr1_2:13266410-13266429 | None:intergenic | 5.0% |
| TGTATTGCAGCTTGCACTGG+TGG | - | chr1_2:13266260-13266279 | Msa0057290:CDS | 50.0% | |
| TTCAGGTGGTAAGGCAGCAT+GGG | + | chr1_2:13266289-13266308 | None:intergenic | 50.0% | |
| ATTCAGGTGGTAAGGCAGCA+TGG | + | chr1_2:13266290-13266309 | None:intergenic | 50.0% | |
| GGTGGAACATCAGTGGATGA+TGG | - | chr1_2:13266706-13266725 | Msa0057290:CDS | 50.0% | |
| GAGGCAAGAATGTTGGTCCA+TGG | + | chr1_2:13266909-13266928 | None:intergenic | 50.0% | |
| ATGGAATTAGCAACGTCGCG+AGG | + | chr1_2:13266928-13266947 | None:intergenic | 50.0% | |
| CTCCATCAAGCAAGGATCGA+CGG | - | chr1_2:13266990-13267009 | Msa0057290:intron | 50.0% | |
| TTCCGTCGATCCTTGCTTGA+TGG | + | chr1_2:13266995-13267014 | None:intergenic | 50.0% | |
| GTGTACTCTTTGCCTCTGGA+AGG | - | chr1_2:13267297-13267316 | Msa0057290:CDS | 50.0% | |
| CTTGACCCTGTTGTAGGATG+TGG | + | chr1_2:13267440-13267459 | None:intergenic | 50.0% | |
| TGTATTGCAGCTTGCACTGG+TGG | - | chr1_2:13266260-13266279 | Msa0057290:CDS | 50.0% | |
| TTCAGGTGGTAAGGCAGCAT+GGG | + | chr1_2:13266289-13266308 | None:intergenic | 50.0% | |
| ATTCAGGTGGTAAGGCAGCA+TGG | + | chr1_2:13266290-13266309 | None:intergenic | 50.0% | |
| GGTGGAACATCAGTGGATGA+TGG | - | chr1_2:13266706-13266725 | Msa0057290:CDS | 50.0% | |
| GAGGCAAGAATGTTGGTCCA+TGG | + | chr1_2:13266909-13266928 | None:intergenic | 50.0% | |
| ATGGAATTAGCAACGTCGCG+AGG | + | chr1_2:13266928-13266947 | None:intergenic | 50.0% | |
| CTCCATCAAGCAAGGATCGA+CGG | - | chr1_2:13266990-13267009 | Msa0057290:intron | 50.0% | |
| TTCCGTCGATCCTTGCTTGA+TGG | + | chr1_2:13266995-13267014 | None:intergenic | 50.0% | |
| GTGTACTCTTTGCCTCTGGA+AGG | - | chr1_2:13267297-13267316 | Msa0057290:CDS | 50.0% | |
| CTTGACCCTGTTGTAGGATG+TGG | + | chr1_2:13267440-13267459 | None:intergenic | 50.0% | |
| ACGTCGCGAGGCAAGAATGT+TGG | + | chr1_2:13266916-13266935 | None:intergenic | 55.0% | |
| !! | TTGCCTCTGGAAGGTGCTGA+TGG | - | chr1_2:13267306-13267325 | Msa0057290:intron | 55.0% |
| CTTCCATCAGCACCTTCCAG+AGG | + | chr1_2:13267312-13267331 | None:intergenic | 55.0% | |
| ACGTCGCGAGGCAAGAATGT+TGG | + | chr1_2:13266916-13266935 | None:intergenic | 55.0% | |
| !! | TTGCCTCTGGAAGGTGCTGA+TGG | - | chr1_2:13267306-13267325 | Msa0057290:intron | 55.0% |
| CTTCCATCAGCACCTTCCAG+AGG | + | chr1_2:13267312-13267331 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 13266110 | 13267479 | 13266110 | ID=Msa0057290;Name=Msa0057290 |
| chr1_2 | mRNA | 13266110 | 13267479 | 13266110 | ID=Msa0057290-mRNA-1;Parent=Msa0057290;Name=Msa0057290-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|307 |
| chr1_2 | exon | 13267441 | 13267479 | 13267441 | ID=Msa0057290-mRNA-1:exon:5168;Parent=Msa0057290-mRNA-1 |
| chr1_2 | exon | 13267214 | 13267319 | 13267214 | ID=Msa0057290-mRNA-1:exon:5167;Parent=Msa0057290-mRNA-1 |
| chr1_2 | exon | 13266110 | 13266888 | 13266110 | ID=Msa0057290-mRNA-1:exon:5166;Parent=Msa0057290-mRNA-1 |
| chr1_2 | CDS | 13267441 | 13267479 | 13267441 | ID=Msa0057290-mRNA-1:cds;Parent=Msa0057290-mRNA-1 |
| chr1_2 | CDS | 13267214 | 13267319 | 13267214 | ID=Msa0057290-mRNA-1:cds;Parent=Msa0057290-mRNA-1 |
| chr1_2 | CDS | 13266110 | 13266888 | 13266110 | ID=Msa0057290-mRNA-1:cds;Parent=Msa0057290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
