AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0477130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477130 MtrunA17_Chr3g0139001 92.391 184 14 0 1 184 23 206 5.18e-117 330
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477130 AT5G10700.2 60.335 179 54 3 6 184 24 185 9.16e-73 218
Msa0477130 AT5G10700.1 60.335 179 54 3 6 184 24 185 9.35e-73 218

Find 64 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCCAGTCTTACTGTATT+TGG 0.185411 3_3:-81251034 Msa0477130:three_prime_UTR
GGGTTGACTCATTGAGTTAA+AGG 0.322492 3_3:+81254595 None:intergenic
ACGCTTCTGTTTCCGCGGTT+TGG 0.376613 3_3:-81254436 Msa0477130:CDS
CTGATCGATACTTGGCCATT+AGG 0.378184 3_3:-81254482 Msa0477130:CDS
TTTGTGGGTCCTCTTTCAAT+TGG 0.379259 3_3:-81251172 Msa0477130:three_prime_UTR
TACACTGTATGAAGTATAAC+AGG 0.402947 3_3:-81251140 Msa0477130:three_prime_UTR
ATCTGAAACAGCCATAGTTT+AGG 0.421027 3_3:+81251247 None:intergenic
AGTGGTGGAATCGGTGGAGG+CGG 0.421097 3_3:+81254574 None:intergenic
TGAGTAACCACACTGCCTAA+TGG 0.453176 3_3:+81254467 None:intergenic
GGTGACAGGATCGTCTTTGT+TGG 0.462494 3_3:+81254412 None:intergenic
TACGAAGATACAATTGACTT+AGG 0.468453 3_3:+81251330 None:intergenic
TGGTCCAATACGTGGTGCTC+CGG 0.468634 3_3:-81254511 Msa0477130:CDS
GATACAATTGACTTAGGGTA+AGG 0.468771 3_3:+81251336 None:intergenic
TTGTCTGAGAAGCTGACATC+TGG 0.475783 3_3:-81251423 Msa0477130:CDS
GAGAGTGGTGGAATCGGTGG+AGG 0.477145 3_3:+81254571 None:intergenic
TAAAGGTGAGCTGACTCGTC+CGG 0.477990 3_3:+81254612 None:intergenic
CTCCACATCAACTGATTCGC+CGG 0.486687 3_3:-81254549 Msa0477130:CDS
GTCGGGGCTACAATAATCAA+TGG 0.500768 3_3:+81254391 None:intergenic
CACGCCGGAGCACCACGTAT+TGG 0.503895 3_3:+81254507 None:intergenic
GGCGTGATCTGATCGATACT+TGG 0.507820 3_3:-81254490 Msa0477130:CDS
TTGTCCAAATACAGTAAGAC+TGG 0.511524 3_3:+81251030 None:intergenic
TGAGAAGGCGAGGTACGAAC+GGG 0.519329 3_3:+81254679 None:intergenic
GTGGTGGAATCGGTGGAGGC+GGG 0.520690 3_3:+81254575 None:intergenic
TTGAGAAGGCGAGGTACGAA+CGG 0.522363 3_3:+81254678 None:intergenic
ATTGAAAGAGGACCCACAAA+AGG 0.525665 3_3:+81251175 None:intergenic
ACGAAGATACAATTGACTTA+GGG 0.534074 3_3:+81251331 None:intergenic
TGTGGAGAGAGTGGTGGAAT+CGG 0.534342 3_3:+81254565 None:intergenic
ACAGAAATACCAATTGAAAG+AGG 0.538044 3_3:+81251163 None:intergenic
TCTACGTGTCAGTCTGTCAA+TGG 0.550680 3_3:-81254738 Msa0477130:exon
CTACAATAATCAATGGTGAC+AGG 0.550910 3_3:+81254398 None:intergenic
AGGCGAGGTACGAACGGGAG+GGG 0.553596 3_3:+81254684 None:intergenic
TTAGGTCACACTTGAAGTGA+AGG 0.554959 3_3:-81251466 Msa0477130:intron
TTCCGGCGAATCAGTTGATG+TGG 0.555932 3_3:+81254547 None:intergenic
GTGGGATCATTCATAAAGTG+TGG 0.560984 3_3:-81251401 Msa0477130:CDS
GGGTTGAAGAGACGAAGCGT+AGG 0.561056 3_3:+81254704 None:intergenic
TTAGGCAGTGTGGTTACTCA+AGG 0.562328 3_3:-81254464 Msa0477130:CDS
GAAGGCGAGGTACGAACGGG+AGG 0.562660 3_3:+81254682 None:intergenic
GGAGAGAGTGGTGGAATCGG+TGG 0.566146 3_3:+81254568 None:intergenic
AAGGCGAGGTACGAACGGGA+GGG 0.566860 3_3:+81254683 None:intergenic
TCTGAGAAGCTGACATCTGG+TGG 0.567728 3_3:-81251420 Msa0477130:CDS
GCCGGAAAACGTCGATGTTG+TGG 0.569743 3_3:-81254531 Msa0477130:CDS
TGAAGAGACGAAGCGTAGGA+AGG 0.573707 3_3:+81254708 None:intergenic
AGAGGACCCACAAAAGGCAG+AGG 0.576874 3_3:+81251181 None:intergenic
ACTAAACTTCGTTCTTGAGA+AGG 0.577942 3_3:+81254664 None:intergenic
ATACAGTGGATTCTAAAACT+AGG 0.598395 3_3:+81250936 None:intergenic
GAAGAGACGAAGCGTAGGAA+GGG 0.601157 3_3:+81254709 None:intergenic
GAAACAGCCATAGTTTAGGA+AGG 0.606288 3_3:+81251251 None:intergenic
GAGGACCCACAAAAGGCAGA+GGG 0.612024 3_3:+81251182 None:intergenic
TAGGTCACACTTGAAGTGAA+GGG 0.618162 3_3:-81251465 Msa0477130:CDS
ACTTCGTTCTTGAGAAGGCG+AGG 0.622634 3_3:+81254669 None:intergenic
CTGAGAAGCTGACATCTGGT+GGG 0.629502 3_3:-81251419 Msa0477130:CDS
TTAACATCCATCGTACGTTG+AGG 0.635696 3_3:-81251055 Msa0477130:three_prime_UTR
TTGCCACGCTTCTGTTTCCG+CGG 0.641384 3_3:-81254441 Msa0477130:CDS
ATCAGTTGATGTGGAGAGAG+TGG 0.646257 3_3:+81254556 None:intergenic
TGAAGTATAACAGGAAGTTG+CGG 0.647231 3_3:-81251131 Msa0477130:three_prime_UTR
ACTGGAACCTCAACGTACGA+TGG 0.649045 3_3:+81251048 None:intergenic
CGATGTTGTGGTCCAATACG+TGG 0.652164 3_3:-81254519 Msa0477130:CDS
GTCTTTGTTGGACCAAACCG+CGG 0.653891 3_3:+81254424 None:intergenic
AGTTGATGTGGAGAGAGTGG+TGG 0.659985 3_3:+81254559 None:intergenic
AAACCGCGGAAACAGAAGCG+TGG 0.664099 3_3:+81254438 None:intergenic
TACTTGGCCATTAGGCAGTG+TGG 0.667910 3_3:-81254474 Msa0477130:CDS
TGGGATCATTCATAAAGTGT+GGG 0.672024 3_3:-81251400 Msa0477130:CDS
GTTTAGTGTCACTTTACACG+CGG 0.717247 3_3:-81254648 Msa0477130:CDS
AAGTATCGATCAGATCACGC+CGG 0.740521 3_3:+81254492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAAATAAAAAATCATA+AGG + chr3_3:81254124-81254143 None:intergenic 10.0%
!! AGTTTAAATAAAAAATCATA+AGG - chr3_3:81254124-81254143 Msa0477130:intron 10.0%
!! AATAAATAAATAAAGAAGAG+AGG + chr3_3:81251360-81251379 None:intergenic 15.0%
!! AAAAATATTGTCTTTCTTAT+TGG - chr3_3:81252540-81252559 Msa0477130:intron 15.0%
!! ATAAGACAAAAAAAAAAATG+AGG + chr3_3:81253033-81253052 None:intergenic 15.0%
!! ATGTTTATTATATATACTGT+TGG - chr3_3:81253119-81253138 Msa0477130:intron 15.0%
!! TTATAATGAAGTTAATATTG+CGG - chr3_3:81253872-81253891 Msa0477130:intron 15.0%
!!! TATGCAATCTGTTTAATTTT+AGG - chr3_3:81251422-81251441 Msa0477130:CDS 20.0%
!!! ATGCAATCTGTTTAATTTTA+GGG - chr3_3:81251423-81251442 Msa0477130:CDS 20.0%
!! ACATTCATTTATCATATACA+TGG + chr3_3:81252276-81252295 None:intergenic 20.0%
!! ATGTTTATGAATATAGTTAC+AGG + chr3_3:81252895-81252914 None:intergenic 20.0%
!! GTAACTATATTCATAAACAT+AGG - chr3_3:81252895-81252914 Msa0477130:intron 20.0%
!! TTAACATACAATTAGCAATT+TGG - chr3_3:81254166-81254185 Msa0477130:intron 20.0%
!!! GATTATTCAATTCTTTTTTG+AGG - chr3_3:81254578-81254597 Msa0477130:CDS 20.0%
!!! TCTTATTTTCTGTTCAATGT+AGG - chr3_3:81251389-81251408 Msa0477130:CDS 25.0%
! TTTGCCAATGCAAAATAAAA+TGG - chr3_3:81251646-81251665 Msa0477130:intron 25.0%
!!! GAATCCATTTTATTTTGCAT+TGG + chr3_3:81251653-81251672 None:intergenic 25.0%
!!! TCAAACATGTGATTTTTAGT+CGG - chr3_3:81251671-81251690 Msa0477130:intron 25.0%
! TAGTTTACTGAGTGTTTAAT+TGG - chr3_3:81251714-81251733 Msa0477130:intron 25.0%
!!! TTTGTTCATTTTTGTACATG+CGG - chr3_3:81252295-81252314 Msa0477130:intron 25.0%
! TCTAAATTCTAATTGACAGA+GGG + chr3_3:81252395-81252414 None:intergenic 25.0%
! TTCTAAATTCTAATTGACAG+AGG + chr3_3:81252396-81252415 None:intergenic 25.0%
! TCTGTCAATTAGAATTTAGA+AGG - chr3_3:81252395-81252414 Msa0477130:intron 25.0%
! CTGTCAATTAGAATTTAGAA+GGG - chr3_3:81252396-81252415 Msa0477130:intron 25.0%
! TGTCAATTAGAATTTAGAAG+GGG - chr3_3:81252397-81252416 Msa0477130:intron 25.0%
! AAAAAATGAGGATATCATTG+TGG + chr3_3:81253021-81253040 None:intergenic 25.0%
! AATTTGTAGTTAGCTCATTT+AGG + chr3_3:81253089-81253108 None:intergenic 25.0%
!! TAATTTGTCCAGATAAACTA+AGG - chr3_3:81253285-81253304 Msa0477130:intron 25.0%
! AAACTTCATTTGTTCAACTA+TGG - chr3_3:81253429-81253448 Msa0477130:intron 25.0%
!!! CAATGTTCTAAAAATCAAAC+TGG + chr3_3:81253510-81253529 None:intergenic 25.0%
! TGATGGTATATTAAAGTTGA+AGG - chr3_3:81253843-81253862 Msa0477130:intron 25.0%
! CAGTTATCCATAAGTTTATT+CGG - chr3_3:81254005-81254024 Msa0477130:intron 25.0%
! AAACTTCATTTGTTCAACTA+TGG + chr3_3:81253429-81253448 None:intergenic 25.0%
!!! TTTTTTTCCTTCCTAAACTA+TGG - chr3_3:81254429-81254448 Msa0477130:CDS 25.0%
! AGTAAAAAAATCAGGAGAAA+AGG + chr3_3:81254479-81254498 None:intergenic 25.0%
! TGCATAGAATCAATTTTGTC+GGG + chr3_3:81251316-81251335 None:intergenic 30.0%
! GTGCATAGAATCAATTTTGT+CGG + chr3_3:81251317-81251336 None:intergenic 30.0%
TTGATTCTATGCACAAAGTA+AGG - chr3_3:81251323-81251342 Msa0477130:CDS 30.0%
TAAGCAGTGAAGTAAAAACT+TGG - chr3_3:81251524-81251543 Msa0477130:intron 30.0%
ATACTTCTACATAAACCACA+CGG - chr3_3:81251563-81251582 Msa0477130:intron 30.0%
!! GAAAAGTGCTAGAATTAAAC+TGG + chr3_3:81251601-81251620 None:intergenic 30.0%
!!! CAAACATGTGATTTTTAGTC+GGG - chr3_3:81251672-81251691 Msa0477130:intron 30.0%
GGGTTGTTCTGATAAATATA+GGG + chr3_3:81252341-81252360 None:intergenic 30.0%
TAAATTCTAATTGACAGAGG+GGG + chr3_3:81252393-81252412 None:intergenic 30.0%
CTAAATTCTAATTGACAGAG+GGG + chr3_3:81252394-81252413 None:intergenic 30.0%
! TAGGTCTTTTGTACTTTCTT+GGG - chr3_3:81252622-81252641 Msa0477130:intron 30.0%
! TTAGGTACTAGTTTGACATT+TGG - chr3_3:81252664-81252683 Msa0477130:intron 30.0%
!! AACTTTCAGGTTAAAGATCT+AGG + chr3_3:81252826-81252845 None:intergenic 30.0%
! GATCTTTAACCTGAAAGTTT+TGG - chr3_3:81252827-81252846 Msa0477130:intron 30.0%
TTACAGGTGATGAATATGAT+GGG + chr3_3:81252879-81252898 None:intergenic 30.0%
! GTTAGTTTGATAGCATTAGA+AGG - chr3_3:81253061-81253080 Msa0477130:intron 30.0%
ACCAAAACTCTCTTAAGTTT+AGG - chr3_3:81253173-81253192 Msa0477130:intron 30.0%
CCAAAACTCTCTTAAGTTTA+GGG - chr3_3:81253174-81253193 Msa0477130:intron 30.0%
GTCTATCAGTTAGTTAACAA+GGG - chr3_3:81253307-81253326 Msa0477130:intron 30.0%
TTCTTCTTCTTCATGCTAAA+TGG - chr3_3:81253553-81253572 Msa0477130:intron 30.0%
!!! ACACTTTTTGGAACTTACTT+TGG - chr3_3:81253701-81253720 Msa0477130:intron 30.0%
!!! CACTTTTTGGAACTTACTTT+GGG - chr3_3:81253702-81253721 Msa0477130:intron 30.0%
!!! ACTTTTTGGAACTTACTTTG+GGG - chr3_3:81253703-81253722 Msa0477130:intron 30.0%
!!! AACTCAAAGGTTGATGTTTT+AGG + chr3_3:81253734-81253753 None:intergenic 30.0%
CATAAGAAAAGCAAACTCAA+AGG + chr3_3:81253747-81253766 None:intergenic 30.0%
!! TGAGTTTGCTTTTCTTATGT+TGG - chr3_3:81253748-81253767 Msa0477130:intron 30.0%
ATCTAAATTCTCGAAACTGA+AGG + chr3_3:81253794-81253813 None:intergenic 30.0%
AGAAAACATGAAATCCTAGA+AGG + chr3_3:81253909-81253928 None:intergenic 30.0%
TGACTTATCTGCTATTGTTA+TGG - chr3_3:81253942-81253961 Msa0477130:intron 30.0%
AATTTGGTCTACGAATTAAC+TGG - chr3_3:81254182-81254201 Msa0477130:intron 30.0%
! ACGAAGATACAATTGACTTA+GGG + chr3_3:81254359-81254378 None:intergenic 30.0%
! TACGAAGATACAATTGACTT+AGG + chr3_3:81254360-81254379 None:intergenic 30.0%
ACAGAAATACCAATTGAAAG+AGG + chr3_3:81254527-81254546 None:intergenic 30.0%
TACACTGTATGAAGTATAAC+AGG - chr3_3:81254547-81254566 Msa0477130:CDS 30.0%
ACTAAACTTCGTTCTTGAGA+AGG + chr3_3:81251026-81251045 None:intergenic 35.0%
CTACAATAATCAATGGTGAC+AGG + chr3_3:81251292-81251311 None:intergenic 35.0%
! GCATAGAATCAATTTTGTCG+GGG + chr3_3:81251315-81251334 None:intergenic 35.0%
!! CGATTTGTTATCTAGTGTTG+TGG - chr3_3:81251490-81251509 Msa0477130:intron 35.0%
TACTGAGTGTTTAATTGGTC+CGG - chr3_3:81251719-81251738 Msa0477130:intron 35.0%
ACCCAAAACCTTAAGACATT+GGG - chr3_3:81251881-81251900 Msa0477130:intron 35.0%
! ACCCAATGTCTTAAGGTTTT+GGG + chr3_3:81251885-81251904 None:intergenic 35.0%
! AACCCAATGTCTTAAGGTTT+TGG + chr3_3:81251886-81251905 None:intergenic 35.0%
ACCTTAAGACATTGGGTTTA+TGG - chr3_3:81251888-81251907 Msa0477130:intron 35.0%
CCTTAAGACATTGGGTTTAT+GGG - chr3_3:81251889-81251908 Msa0477130:intron 35.0%
! GACAGTTTAAAGTTCCACAT+TGG - chr3_3:81252076-81252095 Msa0477130:intron 35.0%
! GTTTAAAGTTCCACATTGGA+TGG - chr3_3:81252080-81252099 Msa0477130:intron 35.0%
TTGAGCTACATATTAGAGAG+AGG - chr3_3:81252113-81252132 Msa0477130:intron 35.0%
TCCATAAATCCAATGCCTTA+AGG - chr3_3:81252137-81252156 Msa0477130:intron 35.0%
!! ACCTTAAGGCATTGGATTTA+TGG + chr3_3:81252141-81252160 None:intergenic 35.0%
! AATCCAATGCCTTAAGGTTT+TGG - chr3_3:81252143-81252162 Msa0477130:intron 35.0%
! ATCCAATGCCTTAAGGTTTT+GGG - chr3_3:81252144-81252163 Msa0477130:intron 35.0%
CATCTTAACCCAAAACCTTA+AGG + chr3_3:81252155-81252174 None:intergenic 35.0%
!!! TAAGGTTTTGGGTTAAGATG+TGG - chr3_3:81252155-81252174 Msa0477130:intron 35.0%
GGGGTTGTTCTGATAAATAT+AGG + chr3_3:81252342-81252361 None:intergenic 35.0%
AAATTCTAATTGACAGAGGG+GGG + chr3_3:81252392-81252411 None:intergenic 35.0%
TCTGGGAGAAACAAAACATT+TGG - chr3_3:81252481-81252500 Msa0477130:intron 35.0%
! GAAAGTACAAAAGACCTAGT+TGG + chr3_3:81252620-81252639 None:intergenic 35.0%
! CTAGGTCTTTTGTACTTTCT+TGG - chr3_3:81252621-81252640 Msa0477130:intron 35.0%
! CTTTTGTACTTTCTTGGGTA+TGG - chr3_3:81252627-81252646 Msa0477130:intron 35.0%
GTCAAACTAGTACCTAATCA+GGG + chr3_3:81252661-81252680 None:intergenic 35.0%
TGTCAAACTAGTACCTAATC+AGG + chr3_3:81252662-81252681 None:intergenic 35.0%
AGTATGCTATGGATGTCTTA+GGG + chr3_3:81252735-81252754 None:intergenic 35.0%
GTATTGAGATAGCTCAATCA+AGG + chr3_3:81252783-81252802 None:intergenic 35.0%
! GGTTGACTATGTTATTTGCT+TGG + chr3_3:81252805-81252824 None:intergenic 35.0%
ACATCTGATCCAAAACTTTC+AGG + chr3_3:81252839-81252858 None:intergenic 35.0%
! TGATGAATATGATGGGATAC+TGG + chr3_3:81252872-81252891 None:intergenic 35.0%
GTTACAGGTGATGAATATGA+TGG + chr3_3:81252880-81252899 None:intergenic 35.0%
TTGTTCAACAGTATGACATG+AGG + chr3_3:81252921-81252940 None:intergenic 35.0%
! TTGGTGACAAACAACTAGTA+CGG + chr3_3:81253158-81253177 None:intergenic 35.0%
! CCCTAAACTTAAGAGAGTTT+TGG + chr3_3:81253177-81253196 None:intergenic 35.0%
CTGATAGACCTTAGTTTATC+TGG + chr3_3:81253296-81253315 None:intergenic 35.0%
GGTCTATCAGTTAGTTAACA+AGG - chr3_3:81253306-81253325 Msa0477130:intron 35.0%
! AATCAAACTGGTCATTGACT+TGG + chr3_3:81253498-81253517 None:intergenic 35.0%
ATGGAAATATGCTCACATCA+TGG - chr3_3:81253572-81253591 Msa0477130:intron 35.0%
AAGTCTCAAGAGCAACTATT+TGG + chr3_3:81253622-81253641 None:intergenic 35.0%
ACATGCACAAATAGATGTGA+TGG - chr3_3:81253826-81253845 Msa0477130:intron 35.0%
GACACTACCGAATAAACTTA+TGG + chr3_3:81254015-81254034 None:intergenic 35.0%
GCATATGCAGTTTCAATTCA+AGG - chr3_3:81254046-81254065 Msa0477130:intron 35.0%
GGTTGCTGAACTTAAACTTT+AGG - chr3_3:81254203-81254222 Msa0477130:intron 35.0%
! TCAGACAAGTTTTTGATCTG+GGG + chr3_3:81254252-81254271 None:intergenic 35.0%
! CTCAGACAAGTTTTTGATCT+GGG + chr3_3:81254253-81254272 None:intergenic 35.0%
! TCTCAGACAAGTTTTTGATC+TGG + chr3_3:81254254-81254273 None:intergenic 35.0%
TGGGATCATTCATAAAGTGT+GGG - chr3_3:81254287-81254306 Msa0477130:intron 35.0%
! GATACAATTGACTTAGGGTA+AGG + chr3_3:81254354-81254373 None:intergenic 35.0%
! ATCTGAAACAGCCATAGTTT+AGG + chr3_3:81254443-81254462 None:intergenic 35.0%
!!! CTCCTGATTTTTTTACTGAC+TGG - chr3_3:81254482-81254501 Msa0477130:CDS 35.0%
TGAAGTATAACAGGAAGTTG+CGG - chr3_3:81254556-81254575 Msa0477130:CDS 35.0%
TTGTCCAAATACAGTAAGAC+TGG + chr3_3:81254660-81254679 None:intergenic 35.0%
!! GTTTAGTGTCACTTTACACG+CGG - chr3_3:81251039-81251058 Msa0477130:three_prime_UTR 40.0%
! GGGTTGACTCATTGAGTTAA+AGG + chr3_3:81251095-81251114 None:intergenic 40.0%
CTGTTCAATGTAGGCTTTCT+AGG - chr3_3:81251398-81251417 Msa0477130:CDS 40.0%
AATCGATCATGTCTATGCAC+TGG + chr3_3:81251475-81251494 None:intergenic 40.0%
!!! ATTTTTAGTCGGGTTTGCGT+TGG - chr3_3:81251682-81251701 Msa0477130:intron 40.0%
!! TTTTTAGTCGGGTTTGCGTT+GGG - chr3_3:81251683-81251702 Msa0477130:intron 40.0%
ACTGAGTGTTTAATTGGTCC+GGG - chr3_3:81251720-81251739 Msa0477130:intron 40.0%
TTTAATTGGTCCGGGATGTT+GGG - chr3_3:81251728-81251747 Msa0477130:intron 40.0%
AATGATGATCGAACCTAGTG+AGG + chr3_3:81251766-81251785 None:intergenic 40.0%
TCACTAGGTTCGATCATCAT+TGG - chr3_3:81251765-81251784 Msa0477130:intron 40.0%
GTAAGAACAACCACACAAGT+CGG - chr3_3:81251841-81251860 Msa0477130:intron 40.0%
!!! TAAGGTTTTGGGTGAAGATG+TGG + chr3_3:81251874-81251893 None:intergenic 40.0%
CACCCAAAACCTTAAGACAT+TGG - chr3_3:81251880-81251899 Msa0477130:intron 40.0%
CCCATAAACCCAATGTCTTA+AGG + chr3_3:81251892-81251911 None:intergenic 40.0%
ATACCATTGTTGGGTCATGA+GGG + chr3_3:81251959-81251978 None:intergenic 40.0%
ATCAAAACATCTCTCCCTTG+AGG + chr3_3:81252047-81252066 None:intergenic 40.0%
AAAGTTCCACATTGGATGGA+AGG - chr3_3:81252084-81252103 Msa0477130:intron 40.0%
AACCCAAAACCTTAAGGCAT+TGG + chr3_3:81252149-81252168 None:intergenic 40.0%
! TTTAGAAGGGGTGCATTTCA+AGG - chr3_3:81252409-81252428 Msa0477130:intron 40.0%
!!! TTCCCTGCTTTTTTTGCTTC+TGG - chr3_3:81252463-81252482 Msa0477130:intron 40.0%
!!! TCCCTGCTTTTTTTGCTTCT+GGG - chr3_3:81252464-81252483 Msa0477130:intron 40.0%
TCCCAGAAGCAAAAAAAGCA+GGG + chr3_3:81252468-81252487 None:intergenic 40.0%
GTACTTTCTTGGGTATGGAA+AGG - chr3_3:81252632-81252651 Msa0477130:intron 40.0%
GTATGCTATGGATGTCTTAG+GGG + chr3_3:81252734-81252753 None:intergenic 40.0%
GAGTATGCTATGGATGTCTT+AGG + chr3_3:81252736-81252755 None:intergenic 40.0%
CATCCATAGCATACTCTATG+CGG - chr3_3:81252740-81252759 Msa0477130:intron 40.0%
TTTCCGCATAGAGTATGCTA+TGG + chr3_3:81252746-81252765 None:intergenic 40.0%
GAGGATATCATTGTGGTTGT+GGG + chr3_3:81253014-81253033 None:intergenic 40.0%
TGAGGATATCATTGTGGTTG+TGG + chr3_3:81253015-81253034 None:intergenic 40.0%
!!! GTACACATTAGCTGGTTTTC+AGG + chr3_3:81253209-81253228 None:intergenic 40.0%
TCACTGATGTACACATTAGC+TGG + chr3_3:81253217-81253236 None:intergenic 40.0%
GCTAATGTGTACATCAGTGA+TGG - chr3_3:81253217-81253236 Msa0477130:intron 40.0%
TGTGTGTGTGTGTAAACACT+TGG + chr3_3:81253247-81253266 None:intergenic 40.0%
AACTATGGCTCAATCGTAGT+TGG - chr3_3:81253444-81253463 Msa0477130:intron 40.0%
!! TGGACTAGTGAATTGCAAAC+TGG - chr3_3:81253464-81253483 Msa0477130:intron 40.0%
! AAAAGTGTGTGACGTGTTGA+CGG + chr3_3:81253689-81253708 None:intergenic 40.0%
! TCAACACGTCACACACTTTT+TGG - chr3_3:81253689-81253708 Msa0477130:intron 40.0%
TCTCGAAACTGAAGGCAAAA+AGG + chr3_3:81253786-81253805 None:intergenic 40.0%
GAAGTTAATATTGCGGCACT+TGG - chr3_3:81253879-81253898 Msa0477130:intron 40.0%
!! GATTGTGCCATTTGACATCA+GGG - chr3_3:81253964-81253983 Msa0477130:intron 40.0%
ACAACAACCCTGATGTCAAA+TGG + chr3_3:81253974-81253993 None:intergenic 40.0%
!! TGGACTAGTGAATTGCAAAC+TGG + chr3_3:81253464-81253483 None:intergenic 40.0%
AACTATGGCTCAATCGTAGT+TGG + chr3_3:81253444-81253463 None:intergenic 40.0%
TTAGGTCACACTTGAAGTGA+AGG - chr3_3:81254221-81254240 Msa0477130:intron 40.0%
TAGGTCACACTTGAAGTGAA+GGG - chr3_3:81254222-81254241 Msa0477130:intron 40.0%
GTGGGATCATTCATAAAGTG+TGG - chr3_3:81254286-81254305 Msa0477130:intron 40.0%
! AGGCAAGTAGGTATGTTTTC+AGG + chr3_3:81254321-81254340 None:intergenic 40.0%
!! TAGGGTAAGGTTTTGTAGCA+AGG + chr3_3:81254341-81254360 None:intergenic 40.0%
GAAACAGCCATAGTTTAGGA+AGG + chr3_3:81254439-81254458 None:intergenic 40.0%
GGCCAGTCAGTAAAAAAATC+AGG + chr3_3:81254487-81254506 None:intergenic 40.0%
ATTGAAAGAGGACCCACAAA+AGG + chr3_3:81254515-81254534 None:intergenic 40.0%
TTTGTGGGTCCTCTTTCAAT+TGG - chr3_3:81254515-81254534 Msa0477130:CDS 40.0%
TTAACATCCATCGTACGTTG+AGG - chr3_3:81254632-81254651 Msa0477130:CDS 40.0%
GGTTCCAGTCTTACTGTATT+TGG - chr3_3:81254653-81254672 Msa0477130:CDS 40.0%
TCTACGTGTCAGTCTGTCAA+TGG - chr3_3:81250949-81250968 Msa0477130:three_prime_UTR 45.0%
! ACTCGTCCGGTTTGAAAAAG+AGG + chr3_3:81251065-81251084 None:intergenic 45.0%
! ATCAGTTGATGTGGAGAGAG+TGG + chr3_3:81251134-81251153 None:intergenic 45.0%
! ACCACAACATCGACGTTTTC+CGG + chr3_3:81251160-81251179 None:intergenic 45.0%
!! AAGTATCGATCAGATCACGC+CGG + chr3_3:81251198-81251217 None:intergenic 45.0%
CTGATCGATACTTGGCCATT+AGG - chr3_3:81251205-81251224 Msa0477130:three_prime_UTR 45.0%
TGAGTAACCACACTGCCTAA+TGG + chr3_3:81251223-81251242 None:intergenic 45.0%
TTAGGCAGTGTGGTTACTCA+AGG - chr3_3:81251223-81251242 Msa0477130:three_prime_UTR 45.0%
GTCGGGGCTACAATAATCAA+TGG + chr3_3:81251299-81251318 None:intergenic 45.0%
TGGAGACATTTACTACCGTG+TGG + chr3_3:81251581-81251600 None:intergenic 45.0%
GTTTAATTGGTCCGGGATGT+TGG - chr3_3:81251727-81251746 Msa0477130:intron 45.0%
AGGTTCGATCATCATTGGTC+CGG - chr3_3:81251770-81251789 Msa0477130:intron 45.0%
TGTGATGATCGAACCTAGTG+AGG + chr3_3:81251817-81251836 None:intergenic 45.0%
TACCATTGTTGGGTCATGAG+GGG + chr3_3:81251958-81251977 None:intergenic 45.0%
GATACCATTGTTGGGTCATG+AGG + chr3_3:81251960-81251979 None:intergenic 45.0%
TATCAGAGCCCGATTAGACT+TGG - chr3_3:81251976-81251995 Msa0477130:intron 45.0%
AATCCCCCACCAAGTCTAAT+CGG + chr3_3:81251988-81252007 None:intergenic 45.0%
!! ATTAGACTTGGTGGGGGATT+AGG - chr3_3:81251988-81252007 Msa0477130:intron 45.0%
! ACCTTGTTTGCTCACAGATG+CGG - chr3_3:81252017-81252036 Msa0477130:intron 45.0%
TGGTGTCCAACTCACTTGTT+TGG - chr3_3:81252175-81252194 Msa0477130:intron 45.0%
GAGCAACCAAACAAGTGAGT+TGG + chr3_3:81252184-81252203 None:intergenic 45.0%
! ACTGGATTGGATCGTCACAT+TGG + chr3_3:81252212-81252231 None:intergenic 45.0%
TGTGACGATCCAATCCAGTT+AGG - chr3_3:81252213-81252232 Msa0477130:intron 45.0%
AAGCACCTAGAGTCATGTGT+TGG + chr3_3:81252252-81252271 None:intergenic 45.0%
CTCCCAGAAGCAAAAAAAGC+AGG + chr3_3:81252469-81252488 None:intergenic 45.0%
GTGCTGAAAAGCTTCCAACT+AGG - chr3_3:81252603-81252622 Msa0477130:intron 45.0%
ATGGAAAGGACTCCCTGATT+AGG - chr3_3:81252646-81252665 Msa0477130:intron 45.0%
ATGGATGTCTTAGGGGAAAC+TGG + chr3_3:81252727-81252746 None:intergenic 45.0%
!! ACTGGTCATTGACTTGGTGA+AGG + chr3_3:81253492-81253511 None:intergenic 45.0%
!! GGATTGTGCCATTTGACATC+AGG - chr3_3:81253963-81253982 Msa0477130:intron 45.0%
TTGTCTGAGAAGCTGACATC+TGG - chr3_3:81254264-81254283 Msa0477130:intron 45.0%
!! GGTTTTGTAGCAAGGCAAGT+AGG + chr3_3:81254333-81254352 None:intergenic 45.0%
GAAGAGACGAAGCGTAGGAA+GGG + chr3_3:81250981-81251000 None:intergenic 50.0%
TGAAGAGACGAAGCGTAGGA+AGG + chr3_3:81250982-81251001 None:intergenic 50.0%
TTGAGAAGGCGAGGTACGAA+CGG + chr3_3:81251012-81251031 None:intergenic 50.0%
ACTTCGTTCTTGAGAAGGCG+AGG + chr3_3:81251021-81251040 None:intergenic 50.0%
!!! ACGCGGCCTCTTTTTCAAAC+CGG - chr3_3:81251056-81251075 Msa0477130:three_prime_UTR 50.0%
!! TAAAGGTGAGCTGACTCGTC+CGG + chr3_3:81251078-81251097 None:intergenic 50.0%
! TGTGGAGAGAGTGGTGGAAT+CGG + chr3_3:81251125-81251144 None:intergenic 50.0%
! AGTTGATGTGGAGAGAGTGG+TGG + chr3_3:81251131-81251150 None:intergenic 50.0%
!! CTCCACATCAACTGATTCGC+CGG - chr3_3:81251138-81251157 Msa0477130:three_prime_UTR 50.0%
! TTCCGGCGAATCAGTTGATG+TGG + chr3_3:81251143-81251162 None:intergenic 50.0%
CGATGTTGTGGTCCAATACG+TGG - chr3_3:81251168-81251187 Msa0477130:three_prime_UTR 50.0%
GGCGTGATCTGATCGATACT+TGG - chr3_3:81251197-81251216 Msa0477130:three_prime_UTR 50.0%
TACTTGGCCATTAGGCAGTG+TGG - chr3_3:81251213-81251232 Msa0477130:three_prime_UTR 50.0%
GTCTTTGTTGGACCAAACCG+CGG + chr3_3:81251266-81251285 None:intergenic 50.0%
GGTGACAGGATCGTCTTTGT+TGG + chr3_3:81251278-81251297 None:intergenic 50.0%
! TGCCTTATTGCCCAACATCC+CGG + chr3_3:81251741-81251760 None:intergenic 50.0%
GCAATAAGGCAAGCCTCACT+AGG - chr3_3:81251750-81251769 Msa0477130:intron 50.0%
GGTTCGATCATCATTGGTCC+GGG - chr3_3:81251771-81251790 Msa0477130:intron 50.0%
TCATCATTGGTCCGGGATGT+TGG - chr3_3:81251778-81251797 Msa0477130:intron 50.0%
CATCATTGGTCCGGGATGTT+GGG - chr3_3:81251779-81251798 Msa0477130:intron 50.0%
! TGCCTTATTGCCCAACATCC+CGG + chr3_3:81251741-81251760 None:intergenic 50.0%
GCAATAAGGCAAGCCTCACT+AGG - chr3_3:81251750-81251769 Msa0477130:intron 50.0%
GAACAACCACACAAGTCGGT+TGG - chr3_3:81251845-81251864 Msa0477130:intron 50.0%
GAGCAACCACACAAGTGAGT+CGG + chr3_3:81251916-81251935 None:intergenic 50.0%
CTCACTTGTGTGGTTGCTCT+TGG - chr3_3:81251917-81251936 Msa0477130:intron 50.0%
! CGGGCTCTGATACCATTGTT+GGG + chr3_3:81251968-81251987 None:intergenic 50.0%
! TCGGGCTCTGATACCATTGT+TGG + chr3_3:81251969-81251988 None:intergenic 50.0%
! AGAGCCCGATTAGACTTGGT+GGG - chr3_3:81251980-81251999 Msa0477130:intron 50.0%
ATCCCCCACCAAGTCTAATC+GGG + chr3_3:81251987-81252006 None:intergenic 50.0%
TCCGCATCTGTGAGCAAACA+AGG + chr3_3:81252021-81252040 None:intergenic 50.0%
CCTCAACCTTCCATCCAATG+TGG + chr3_3:81252093-81252112 None:intergenic 50.0%
CCACATTGGATGGAAGGTTG+AGG - chr3_3:81252090-81252109 Msa0477130:intron 50.0%
GATTGGGAGCCTAACTGGAT+TGG + chr3_3:81252225-81252244 None:intergenic 50.0%
TCCAGTTAGGCTCCCAATCA+CGG - chr3_3:81252226-81252245 Msa0477130:intron 50.0%
! GTCATGTGTTGGCCGTGATT+GGG + chr3_3:81252241-81252260 None:intergenic 50.0%
! AGTCATGTGTTGGCCGTGAT+TGG + chr3_3:81252242-81252261 None:intergenic 50.0%
TCTAATTGACAGAGGGGGGA+GGG + chr3_3:81252388-81252407 None:intergenic 50.0%
TTCTAATTGACAGAGGGGGG+AGG + chr3_3:81252389-81252408 None:intergenic 50.0%
AATCTCCCAAACCATGCTCG+AGG - chr3_3:81252949-81252968 Msa0477130:intron 50.0%
ATCTCCCAAACCATGCTCGA+GGG - chr3_3:81252950-81252969 Msa0477130:intron 50.0%
AGGGGTAGTTTGACCGTACA+GGG - chr3_3:81252969-81252988 Msa0477130:intron 50.0%
TAGTTTGACCGTACAGGGCA+GGG - chr3_3:81252974-81252993 Msa0477130:intron 50.0%
CGGCACTTGGTAAACCTTCT+AGG - chr3_3:81253892-81253911 Msa0477130:intron 50.0%
TCTGAGAAGCTGACATCTGG+TGG - chr3_3:81254267-81254286 Msa0477130:intron 50.0%
CTGAGAAGCTGACATCTGGT+GGG - chr3_3:81254268-81254287 Msa0477130:intron 50.0%
ACTGGAACCTCAACGTACGA+TGG + chr3_3:81254642-81254661 None:intergenic 50.0%
GGGTTGAAGAGACGAAGCGT+AGG + chr3_3:81250986-81251005 None:intergenic 55.0%
TGAGAAGGCGAGGTACGAAC+GGG + chr3_3:81251011-81251030 None:intergenic 55.0%
GCCGGAAAACGTCGATGTTG+TGG - chr3_3:81251156-81251175 Msa0477130:three_prime_UTR 55.0%
TGGTCCAATACGTGGTGCTC+CGG - chr3_3:81251176-81251195 Msa0477130:three_prime_UTR 55.0%
TTGCCACGCTTCTGTTTCCG+CGG - chr3_3:81251246-81251265 Msa0477130:three_prime_UTR 55.0%
AAACCGCGGAAACAGAAGCG+TGG + chr3_3:81251252-81251271 None:intergenic 55.0%
ACGCTTCTGTTTCCGCGGTT+TGG - chr3_3:81251251-81251270 Msa0477130:three_prime_UTR 55.0%
GTCCGGGATGTTGGGCAATA+AGG - chr3_3:81251736-81251755 Msa0477130:intron 55.0%
GTCCGGGATGTTGGGCAATA+AGG - chr3_3:81251736-81251755 Msa0477130:intron 55.0%
!! TGGTGTCCAACCGACTTGTG+TGG + chr3_3:81251854-81251873 None:intergenic 55.0%
ATGGGTCCGACTCACTTGTG+TGG - chr3_3:81251907-81251926 Msa0477130:intron 55.0%
CATGAGGGGAGTCTAGGCAT+TGG + chr3_3:81251944-81251963 None:intergenic 55.0%
TTGGGTCATGAGGGGAGTCT+AGG + chr3_3:81251950-81251969 None:intergenic 55.0%
CTCCCCTCATGACCCAACAA+TGG - chr3_3:81251953-81251972 Msa0477130:intron 55.0%
CAGAGCCCGATTAGACTTGG+TGG - chr3_3:81251979-81251998 Msa0477130:intron 55.0%
!! GAGCCCGATTAGACTTGGTG+GGG - chr3_3:81251981-81252000 Msa0477130:intron 55.0%
!! AGCCCGATTAGACTTGGTGG+GGG - chr3_3:81251982-81252001 Msa0477130:intron 55.0%
ACAGATGCGGAGAGCCTCAA+GGG - chr3_3:81252030-81252049 Msa0477130:intron 55.0%
CACGGCCAACACATGACTCT+AGG - chr3_3:81252244-81252263 Msa0477130:intron 55.0%
AGGGACTAAGGGAGAGAGTG+GGG + chr3_3:81252362-81252381 None:intergenic 55.0%
GAGGGACTAAGGGAGAGAGT+GGG + chr3_3:81252363-81252382 None:intergenic 55.0%
TCTCCCAAACCATGCTCGAG+GGG - chr3_3:81252951-81252970 Msa0477130:intron 55.0%
CTACCCCTCGAGCATGGTTT+GGG + chr3_3:81252957-81252976 None:intergenic 55.0%
ACTACCCCTCGAGCATGGTT+TGG + chr3_3:81252958-81252977 None:intergenic 55.0%
GTCAAACTACCCCTCGAGCA+TGG + chr3_3:81252963-81252982 None:intergenic 55.0%
GAGGGGTAGTTTGACCGTAC+AGG - chr3_3:81252968-81252987 Msa0477130:intron 55.0%
GTAGTTTGACCGTACAGGGC+AGG - chr3_3:81252973-81252992 Msa0477130:intron 55.0%
GGTTGTGGGTATGTCTCTCG+AGG + chr3_3:81253000-81253019 None:intergenic 55.0%
! ACTGGCCCTCTGCCTTTTGT+GGG - chr3_3:81254500-81254519 Msa0477130:CDS 55.0%
GAGGACCCACAAAAGGCAGA+GGG + chr3_3:81254508-81254527 None:intergenic 55.0%
AGAGGACCCACAAAAGGCAG+AGG + chr3_3:81254509-81254528 None:intergenic 55.0%
AAGGCGAGGTACGAACGGGA+GGG + chr3_3:81251007-81251026 None:intergenic 60.0%
! AGTGGTGGAATCGGTGGAGG+CGG + chr3_3:81251116-81251135 None:intergenic 60.0%
! GAGAGTGGTGGAATCGGTGG+AGG + chr3_3:81251119-81251138 None:intergenic 60.0%
! GGAGAGAGTGGTGGAATCGG+TGG + chr3_3:81251122-81251141 None:intergenic 60.0%
CACAGATGCGGAGAGCCTCA+AGG - chr3_3:81252029-81252048 Msa0477130:intron 60.0%
GCCGTGATTGGGAGCCTAAC+TGG + chr3_3:81252230-81252249 None:intergenic 60.0%
GGGACTAAGGGAGAGAGTGG+GGG + chr3_3:81252361-81252380 None:intergenic 60.0%
GGAGGGACTAAGGGAGAGAG+TGG + chr3_3:81252364-81252383 None:intergenic 60.0%
AATTGACAGAGGGGGGAGGG+AGG + chr3_3:81252385-81252404 None:intergenic 60.0%
!! GACTGGCCCTCTGCCTTTTG+TGG - chr3_3:81254499-81254518 Msa0477130:CDS 60.0%
AGGCGAGGTACGAACGGGAG+GGG + chr3_3:81251006-81251025 None:intergenic 65.0%
GAAGGCGAGGTACGAACGGG+AGG + chr3_3:81251008-81251027 None:intergenic 65.0%
! GTGGTGGAATCGGTGGAGGC+GGG + chr3_3:81251115-81251134 None:intergenic 65.0%
! CACGCCGGAGCACCACGTAT+TGG + chr3_3:81251183-81251202 None:intergenic 65.0%
GGGGAGGGAGGAGGGACTAA+GGG + chr3_3:81252373-81252392 None:intergenic 65.0%
TCTCGAGGCCCTGCCCTGTA+CGG + chr3_3:81252985-81253004 None:intergenic 65.0%
GGGGGAGGGAGGAGGGACTA+AGG + chr3_3:81252374-81252393 None:intergenic 70.0%
GACAGAGGGGGGAGGGAGGA+GGG + chr3_3:81252381-81252400 None:intergenic 70.0%
TGACAGAGGGGGGAGGGAGG+AGG + chr3_3:81252382-81252401 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 81250941 81254768 81250941 ID=Msa0477130;Name=Msa0477130
chr3_3 mRNA 81250941 81254768 81250941 ID=Msa0477130-mRNA-1;Parent=Msa0477130;Name=Msa0477130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=27|1|1|1|1|1|2|361|184
chr3_3 exon 81250941 81251484 81250941 ID=Msa0477130-mRNA-1:exon:22385;Parent=Msa0477130-mRNA-1
chr3_3 exon 81254370 81254768 81254370 ID=Msa0477130-mRNA-1:exon:22384;Parent=Msa0477130-mRNA-1
chr3_3 five_prime_UTR 81254742 81254768 81254742 ID=Msa0477130-mRNA-1:five_prime_utr;Parent=Msa0477130-mRNA-1
chr3_3 CDS 81254370 81254741 81254370 ID=Msa0477130-mRNA-1:cds;Parent=Msa0477130-mRNA-1
chr3_3 CDS 81251302 81251484 81251302 ID=Msa0477130-mRNA-1:cds;Parent=Msa0477130-mRNA-1
chr3_3 three_prime_UTR 81250941 81251301 81250941 ID=Msa0477130-mRNA-1:three_prime_utr;Parent=Msa0477130-mRNA-1
Gene Sequence

>Msa0477130

ATGGCTTACACCCTTCCTACGCTTCGTCTCTTCAACCCCTCCCGTTCGTACCTCGCCTTCTCAAGAACGAAGTTTAGTGTCACTTTACACGCGGCCTCTTTTTCAAACCGGACGAGTCAGCTCACCTTTAACTCAATGAGTCAACCCGCCTCCACCGATTCCACCACTCTCTCCACATCAACTGATTCGCCGGAAAACGTCGATGTTGTGGTCCAATACGTGGTGCTCCGGCGTGATCTGATCGATACTTGGCCATTAGGCAGTGTGGTTACTCAAGGTTGCCACGCTTCTGTTTCCGCGGTTTGGTCCAACAAAGACGATCCTGTCACCATTGATTATTGTAGCCCCGACAAAATTGATTCTATGCACAAAGTCACACTTGAAGTGAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTGACATCTGGTGGGATCATTCATAAAGTGTGGGTTGAGCAACCTGAAAACATACCTACTTGCCTTGCTACAAAACCTTACCCTAAGTCAATTGTATCTTCGTATTTTAAGAAGTTGAAACTCTGCAAGTGA

Protein sequence

>Msa0477130

MAYTLPTLRLFNPSRSYLAFSRTKFSVTLHAASFSNRTSQLTFNSMSQPASTDSTTLSTSTDSPENVDVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKDDPVTIDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTSGGIIHKVWVEQPENIPTCLATKPYPKSIVSSYFKKLKLCK*