AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075880 MtrunA17_Chr1g0184851 97.758 223 5 0 1 223 1 223 5.97e-162 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075880 AT5G43680.1 40.611 229 116 5 1 222 1 216 4.31e-48 158
Msa0075880 AT5G43680.2 40.611 229 116 5 1 222 1 216 4.31e-48 158

Find 97 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCACTCATATTTGATTT+TGG 0.099911 1_2:+51475993 None:intergenic
TCAGAAAGAACATGGTAATT+TGG 0.155371 1_2:-51482130 Msa0075880:five_prime_UTR
TGCCGATGAACCATTCTTTA+TGG 0.158677 1_2:+51476921 None:intergenic
AATGGAACCTTTAGATTATA+TGG 0.165860 1_2:-51479607 Msa0075880:five_prime_UTR
CATAGTTCAAGAAGCAATTT+TGG 0.174077 1_2:-51476059 Msa0075880:CDS
CAGAAAGAACATGGTAATTT+GGG 0.216346 1_2:-51482129 Msa0075880:five_prime_UTR
ACTTTGCATATTTAATGATT+TGG 0.278446 1_2:+51476981 None:intergenic
GTTACCAGTTCTTGTTCTTC+AGG 0.295064 1_2:-51475816 Msa0075880:three_prime_UTR
AATTGCATGAAAGATTTCTA+TGG 0.297115 1_2:+51482246 None:intergenic
TAGAAAGACAAGATTAATCT+AGG 0.299773 1_2:-51482156 Msa0075880:five_prime_UTR
TTATTCACCCCAGCATATTC+AGG 0.302866 1_2:+51477132 None:intergenic
TTAGGTTCATAAGGAACTTC+AGG 0.325877 1_2:-51477398 Msa0075880:intron
AGCAACTGCTTATGCAAGTT+TGG 0.332765 1_2:-51476956 Msa0075880:CDS
GAGGCCATTCGTCATGAAAT+TGG 0.333625 1_2:-51477358 Msa0075880:CDS
AAGATAAAGAGAAGAAAAGT+TGG 0.334439 1_2:-51482098 Msa0075880:five_prime_UTR
AGCTAGCCTCCCTGCTGTTC+TGG 0.335117 1_2:+51477925 None:intergenic
TGGAGAAATATTTCTGTTGC+TGG 0.344609 1_2:-51478085 Msa0075880:CDS
GGAGCTACTGCTGCTGTGAT+TGG 0.363534 1_2:-51478063 Msa0075880:intron
GATATCATTGGCAAATCCTT+TGG 0.363620 1_2:+51477947 None:intergenic
TATATGGGAATATATGATTA+AGG 0.370421 1_2:-51479591 Msa0075880:intron
TAAGTTTATATTATAGCCTT+AGG 0.385991 1_2:+51482199 None:intergenic
CCAGTTTCTGCTGAAAATAC+TGG 0.392588 1_2:-51476847 Msa0075880:CDS
CTGTCCTGAAGAACAAGAAC+TGG 0.402531 1_2:+51475812 None:intergenic
ATTATAGCCTTAGGATGGAT+TGG 0.406189 1_2:+51482208 None:intergenic
AGAAGAAAAGTTGGGAATCA+AGG 0.406381 1_2:-51482089 Msa0075880:five_prime_UTR
AGCAGGGAGGCTAGCTGGAC+GGG 0.426637 1_2:-51477918 Msa0075880:CDS
ATGGAACCTTTAGATTATAT+GGG 0.430532 1_2:-51479606 Msa0075880:five_prime_UTR
GAAAGATTTCTATGGTTTGA+AGG 0.434429 1_2:+51482254 None:intergenic
GATGAACCATTCTTTATGGC+AGG 0.436847 1_2:+51476925 None:intergenic
AGGCTAGCTGGACGGGCAGT+TGG 0.440898 1_2:-51477911 Msa0075880:CDS
TTATCATGCCTCCGAGTTGA+TGG 0.457366 1_2:+51477310 None:intergenic
GGCAGTTGGATATGTACAAT+TGG 0.468263 1_2:-51477897 Msa0075880:CDS
AGAACAGCAGGGAGGCTAGC+TGG 0.471150 1_2:-51477923 Msa0075880:CDS
TTATAGCCTTAGGATGGATT+GGG 0.473441 1_2:+51482209 None:intergenic
TCAAGAACACTGAACAATGC+TGG 0.476922 1_2:-51478118 Msa0075880:exon
TGCATATTTAATGATTTGGA+TGG 0.478378 1_2:+51476985 None:intergenic
CCTGCTGTTCTGGATATCAT+TGG 0.485428 1_2:+51477935 None:intergenic
AATCTAAAGGTTCCATTGAC+CGG 0.486347 1_2:+51479613 None:intergenic
AGCATATCATTCATAAATCC+TGG 0.488462 1_2:-51477334 Msa0075880:CDS
TTCTTGAGTGAGATTTCTGT+TGG 0.492774 1_2:+51478134 None:intergenic
GAAGTTGAGGATGTTAAAGT+TGG 0.493213 1_2:-51476889 Msa0075880:CDS
GGAGAAATATTTCTGTTGCT+GGG 0.498165 1_2:-51478084 Msa0075880:CDS
CCAATGATATCCAGAACAGC+AGG 0.503283 1_2:-51477935 Msa0075880:CDS
TCAGAGACTTAGCCGGTCAA+TGG 0.506574 1_2:-51479625 Msa0075880:five_prime_UTR
AGATAAAGAGAAGAAAAGTT+GGG 0.509028 1_2:-51482097 Msa0075880:five_prime_UTR
TTTATATTATAGCCTTAGGA+TGG 0.515236 1_2:+51482203 None:intergenic
TGCTTATGCAAGTTTGGCAC+AGG 0.516642 1_2:-51476950 Msa0075880:CDS
GACAGAAAACCTGAATATGC+TGG 0.517261 1_2:-51477141 Msa0075880:CDS
GGCAAATAGCACTGAAGTTG+AGG 0.519368 1_2:-51476902 Msa0075880:CDS
AGAAAGACAAGATTAATCTA+GGG 0.522172 1_2:-51482155 Msa0075880:five_prime_UTR
CTGGACTCTTACCAAATCGC+GGG 0.532450 1_2:-51476828 Msa0075880:CDS
CAAGAACACTGAACAATGCT+GGG 0.533552 1_2:-51478117 Msa0075880:exon
TGCCTCCGAGTTGATGGGCC+AGG 0.534429 1_2:+51477316 None:intergenic
TATATTCCCATATAATCTAA+AGG 0.535260 1_2:+51479600 None:intergenic
CTCAATATCCTCTCATACCA+AGG 0.536160 1_2:-51477109 Msa0075880:intron
CACTCTACATTGATCAGCAT+CGG 0.536375 1_2:-51478194 Msa0075880:five_prime_UTR
AAATCACCCAATCCATCCTA+AGG 0.539087 1_2:-51482215 Msa0075880:five_prime_UTR
ATGAACCATTCTTTATGGCA+GGG 0.539656 1_2:+51476926 None:intergenic
CAGGCCCCTGCCATAAAGAA+TGG 0.540758 1_2:-51476931 Msa0075880:CDS
ACAGAAAACCTGAATATGCT+GGG 0.542451 1_2:-51477140 Msa0075880:CDS
TGAACCATTCTTTATGGCAG+GGG 0.543010 1_2:+51476927 None:intergenic
ACCAGCAAAATTATAGAAGT+AGG 0.554330 1_2:+51478168 None:intergenic
CAGCAGGGAGGCTAGCTGGA+CGG 0.554377 1_2:-51477919 Msa0075880:CDS
GAGTGAGATTTCTGTTGGAG+AGG 0.555526 1_2:+51478139 None:intergenic
TATCATGCCTCCGAGTTGAT+GGG 0.558095 1_2:+51477311 None:intergenic
GTATTAGAAGCTGATTTGAA+AGG 0.559557 1_2:-51476088 Msa0075880:intron
GGAAACAATGGCACAGCTAG+AGG 0.560838 1_2:-51477377 Msa0075880:CDS
GCTTCCAATTTCATGACGAA+TGG 0.565267 1_2:+51477354 None:intergenic
TGCCATAAAGAATGGTTCAT+CGG 0.576466 1_2:-51476923 Msa0075880:CDS
AGATTTCTATGGTTTGAAGG+TGG 0.576776 1_2:+51482257 None:intergenic
CTAGGGTTTCAGAAAGAACA+TGG 0.576985 1_2:-51482138 Msa0075880:five_prime_UTR
TAACAGAATCAAACTGTCCA+CGG 0.582925 1_2:+51477873 None:intergenic
GACCAGGCATCTATCTCAGA+TGG 0.583124 1_2:-51477283 Msa0075880:intron
TGAATGTGCAATAGGTCCAA+AGG 0.583719 1_2:-51477963 Msa0075880:intron
TACCATCTGAGATAGATGCC+TGG 0.593353 1_2:+51477281 None:intergenic
TCATTCATCATAAGTATCAA+AGG 0.596158 1_2:-51482044 Msa0075880:intron
TAAATCCTGGCCCATCAACT+CGG 0.600125 1_2:-51477321 Msa0075880:CDS
TCAATAAACCTTGGTATGAG+AGG 0.600322 1_2:+51477101 None:intergenic
AAAGAACATGGTAATTTGGG+GGG 0.602166 1_2:-51482126 Msa0075880:five_prime_UTR
AGAAAGAACATGGTAATTTG+GGG 0.603145 1_2:-51482128 Msa0075880:five_prime_UTR
CTTCAGGACAGAAAATCTCA+AGG 0.613401 1_2:-51475800 Msa0075880:three_prime_UTR
AACAGAATCAAACTGTCCAC+GGG 0.614960 1_2:+51477874 None:intergenic
GAAAGAACATGGTAATTTGG+GGG 0.626046 1_2:-51482127 Msa0075880:five_prime_UTR
TAAGGAACTTCAGGAAACAA+TGG 0.628004 1_2:-51477389 Msa0075880:CDS
ACTGGACTCTTACCAAATCG+CGG 0.630502 1_2:-51476829 Msa0075880:CDS
AGAGGTAGCTCATAATGCAA+AGG 0.639899 1_2:-51476032 Msa0075880:CDS
TTGAAGGTGGAAGAAGATGA+TGG 0.642881 1_2:+51482270 None:intergenic
GCAGCGATCTCAAGTTAACC+AGG 0.643061 1_2:-51477849 Msa0075880:intron
GAGGCATGATAATCTTGACC+AGG 0.644493 1_2:-51477299 Msa0075880:CDS
GGTGCATTCAGAGACTTAGC+CGG 0.651354 1_2:-51479632 Msa0075880:five_prime_UTR
TGGACTCTTACCAAATCGCG+GGG 0.678679 1_2:-51476827 Msa0075880:CDS
CAATGATATCCAGAACAGCA+GGG 0.689974 1_2:-51477934 Msa0075880:CDS
CAGAAAACCTGAATATGCTG+GGG 0.698864 1_2:-51477139 Msa0075880:CDS
ATCCTGGCCCATCAACTCGG+AGG 0.708372 1_2:-51477318 Msa0075880:CDS
GGATATGTACAATTGGCCCG+TGG 0.725712 1_2:-51477890 Msa0075880:CDS
TGATATCCAGAACAGCAGGG+AGG 0.762499 1_2:-51477931 Msa0075880:CDS
GGACTCTTACCAAATCGCGG+GGG 0.774422 1_2:-51476826 Msa0075880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAAAAAAAAAA+TGG + chr1_2:51480639-51480658 Msa0075890:CDS 0.0%
!! ATTTAAAAATAAAATAGACA+TGG + chr1_2:51477733-51477752 None:intergenic 10.0%
!! ATTAGAATAAAATAAAGTAT+TGG + chr1_2:51478209-51478228 None:intergenic 10.0%
!! AATAATTAATTTATGTACTT+GGG + chr1_2:51478755-51478774 None:intergenic 10.0%
!! AAATAATTAATTTATGTACT+TGG + chr1_2:51478756-51478775 None:intergenic 10.0%
!!! TTTTCAAATAAAATAAATAG+GGG + chr1_2:51478788-51478807 None:intergenic 10.0%
!!! GTTTTCAAATAAAATAAATA+GGG + chr1_2:51478789-51478808 None:intergenic 10.0%
!!! TGTTTTCAAATAAAATAAAT+AGG + chr1_2:51478790-51478809 None:intergenic 10.0%
!!! ATTTTCGATTTAAAAAATTT+TGG - chr1_2:51479623-51479642 Msa0075880:five_prime_UTR 10.0%
!!! AAAAAAGATTATGATTTTTT+TGG - chr1_2:51480482-51480501 Msa0075880:intron 10.0%
!!! TTTTTTAAAAAAAAAATGGA+AGG + chr1_2:51480635-51480654 Msa0075890:CDS 10.0%
!!! GTTTGTGTATTTTAAATTAT+GGG - chr1_2:51476459-51476478 Msa0075880:intron 15.0%
!! AATTATTATCAAGCATATAA+TGG + chr1_2:51478566-51478585 None:intergenic 15.0%
!!! AATTTTAGTATAAAGAGTAA+TGG - chr1_2:51478582-51478601 Msa0075880:intron 15.0%
!! AGTCATTAACAATTAATATT+AGG + chr1_2:51480341-51480360 None:intergenic 15.0%
!!! TTTAAAATGAATTTTTTCCA+TGG + chr1_2:51480410-51480429 None:intergenic 15.0%
!!! ACTATATTTTGTTATTCAAA+AGG - chr1_2:51481713-51481732 Msa0075880:intron 15.0%
!!! AAACAATTTTTATAATCTTC+TGG + chr1_2:51481812-51481831 None:intergenic 15.0%
!! ACTAATAAATAATGAAAAGA+AGG + chr1_2:51481861-51481880 None:intergenic 15.0%
!! ATTATTTATTAGTAAATGCA+TGG - chr1_2:51481868-51481887 Msa0075880:intron 15.0%
!!! GAAAAATTAAGGTATTATTT+AGG + chr1_2:51482127-51482146 None:intergenic 15.0%
!!! GTAGTTTTTGTTTGTTTTTA+CGG + chr1_2:51475794-51475813 None:intergenic 20.0%
!! TAAGTTTATATTATAGCCTT+AGG + chr1_2:51475892-51475911 None:intergenic 20.0%
!! TCAATCATTCATACATAATT+GGG + chr1_2:51476291-51476310 None:intergenic 20.0%
!! TTCAATCATTCATACATAAT+TGG + chr1_2:51476292-51476311 None:intergenic 20.0%
!! ATTATTATTAGCTGTTACAT+GGG + chr1_2:51476376-51476395 None:intergenic 20.0%
!!! GGTTTGTGTATTTTAAATTA+TGG - chr1_2:51476458-51476477 Msa0075880:intron 20.0%
!! AATATATAGATGTGATGAAT+GGG + chr1_2:51476780-51476799 None:intergenic 20.0%
!!! TATGATTTTGAATTTGAACA+GGG + chr1_2:51476810-51476829 None:intergenic 20.0%
!!! ATATGATTTTGAATTTGAAC+AGG + chr1_2:51476811-51476830 None:intergenic 20.0%
!!! CATTCATTACATTGTTTTAT+TGG - chr1_2:51477703-51477722 Msa0075880:intron 20.0%
!! TACATCCTGTTTATTTAATT+AGG - chr1_2:51477906-51477925 Msa0075880:CDS 20.0%
!! TCTAATGATGTATATTTCAA+GGG + chr1_2:51478370-51478389 None:intergenic 20.0%
!! ATCTAATGATGTATATTTCA+AGG + chr1_2:51478371-51478390 None:intergenic 20.0%
!! TATATTCCCATATAATCTAA+AGG + chr1_2:51478491-51478510 None:intergenic 20.0%
!! TATATGGGAATATATGATTA+AGG - chr1_2:51478497-51478516 Msa0075880:intron 20.0%
!!! TCAAAAAGGTCTTATATTTA+GGG + chr1_2:51478692-51478711 None:intergenic 20.0%
!!! ATATAATATAATTTTGCCCT+TGG + chr1_2:51479293-51479312 None:intergenic 20.0%
!!! TCATTTTAATTAACATCTAC+AGG + chr1_2:51479670-51479689 None:intergenic 20.0%
!! AATTAAAATGAATACACATG+TGG - chr1_2:51479679-51479698 Msa0075880:intron 20.0%
!! ATTAAAATGAATACACATGT+GGG - chr1_2:51479680-51479699 Msa0075880:intron 20.0%
!! TGTTAAATCAGTAAAAAATG+TGG - chr1_2:51479746-51479765 Msa0075880:intron 20.0%
!! GTTAAATCAGTAAAAAATGT+GGG - chr1_2:51479747-51479766 Msa0075880:intron 20.0%
!! TTTCTTCATTTAGAAATTTC+AGG + chr1_2:51480440-51480459 None:intergenic 20.0%
!!! TTATGATTTTTTTGGCATTT+TGG - chr1_2:51480490-51480509 Msa0075880:intron 20.0%
!!! CAAGTAAGATTTTAAAAGTT+AGG - chr1_2:51480560-51480579 Msa0075880:intron 20.0%
!! GTACATACTATAAAATTATC+AGG + chr1_2:51481023-51481042 Msa0075890:CDS 20.0%
!!! ACGTGTATATATTTATTTCT+AGG - chr1_2:51481066-51481085 Msa0075880:intron 20.0%
!! ACTTTGCATATTTAATGATT+TGG + chr1_2:51481110-51481129 Msa0075890:CDS 20.0%
!! CTGTAATCTAAATTATTGAT+GGG - chr1_2:51481931-51481950 Msa0075880:intron 20.0%
!!! TATCACTCATATTTGATTTT+GGG + chr1_2:51482097-51482116 None:intergenic 20.0%
!! AAAATCAAATATGAGTGATA+GGG - chr1_2:51482097-51482116 Msa0075880:five_prime_UTR 20.0%
! AATTGCATGAAAGATTTCTA+TGG + chr1_2:51475845-51475864 None:intergenic 25.0%
!! TTTATATTATAGCCTTAGGA+TGG + chr1_2:51475888-51475907 None:intergenic 25.0%
! TAGAAAGACAAGATTAATCT+AGG - chr1_2:51475932-51475951 Msa0075880:intron 25.0%
! AGAAAGACAAGATTAATCTA+GGG - chr1_2:51475933-51475952 Msa0075880:intron 25.0%
! AAGATAAAGAGAAGAAAAGT+TGG - chr1_2:51475990-51476009 Msa0075880:intron 25.0%
! AGATAAAGAGAAGAAAAGTT+GGG - chr1_2:51475991-51476010 Msa0075880:intron 25.0%
! TCATTCATCATAAGTATCAA+AGG - chr1_2:51476044-51476063 Msa0075880:CDS 25.0%
! ATCTATGAATGTGAAAATCT+TGG - chr1_2:51476134-51476153 Msa0075880:intron 25.0%
! TTATTATTAGCTGTTACATG+GGG + chr1_2:51476375-51476394 None:intergenic 25.0%
! CATTATTATTAGCTGTTACA+TGG + chr1_2:51476377-51476396 None:intergenic 25.0%
! GAATATATAGATGTGATGAA+TGG + chr1_2:51476781-51476800 None:intergenic 25.0%
!! ATGATTTTGAATTTGAACAG+GGG + chr1_2:51476809-51476828 None:intergenic 25.0%
! TCATCTAACTGAAAATCAAT+CGG - chr1_2:51477524-51477543 Msa0075880:intron 25.0%
!! TATGTGTTTTCATATTGGAA+AGG + chr1_2:51477615-51477634 None:intergenic 25.0%
!! ACTTGTATGTGTTTTCATAT+TGG + chr1_2:51477620-51477639 None:intergenic 25.0%
!! TTTTGTGGACAAAAAATAAC+AGG + chr1_2:51477814-51477833 None:intergenic 25.0%
! TGCTTCCTAATTAAATAAAC+AGG + chr1_2:51477914-51477933 None:intergenic 25.0%
! TGTTTATTTAATTAGGAAGC+AGG - chr1_2:51477913-51477932 Msa0075880:CDS 25.0%
! GTTTATTTAATTAGGAAGCA+GGG - chr1_2:51477914-51477933 Msa0075880:CDS 25.0%
! ACCAAATGAAATTCTTAGTA+AGG - chr1_2:51478017-51478036 Msa0075880:intron 25.0%
! CCAAATGAAATTCTTAGTAA+GGG - chr1_2:51478018-51478037 Msa0075880:intron 25.0%
! AAAATATATGCAATTGTGGT+AGG + chr1_2:51478057-51478076 None:intergenic 25.0%
!! TACCACAATTGCATATATTT+TGG - chr1_2:51478056-51478075 Msa0075880:intron 25.0%
! TAATTTCTGTAAAACCTTTC+TGG + chr1_2:51478246-51478265 None:intergenic 25.0%
! AATCAAGTAAATTCTTAAGC+TGG - chr1_2:51478300-51478319 Msa0075880:intron 25.0%
! AATGGAACCTTTAGATTATA+TGG - chr1_2:51478481-51478500 Msa0075880:intron 25.0%
! ATGGAACCTTTAGATTATAT+GGG - chr1_2:51478482-51478501 Msa0075880:intron 25.0%
!! CTCAAAAAGGTCTTATATTT+AGG + chr1_2:51478693-51478712 None:intergenic 25.0%
!! GACAATTTCTTTTCTCAAAA+AGG + chr1_2:51478706-51478725 None:intergenic 25.0%
!! TAAAATAAATAGGGGTATGT+TGG + chr1_2:51478780-51478799 None:intergenic 25.0%
!!! ATTTTATCCTTTAAGAGAGA+GGG + chr1_2:51478821-51478840 None:intergenic 25.0%
!!! AATTTTATCCTTTAAGAGAG+AGG + chr1_2:51478822-51478841 None:intergenic 25.0%
!! AACTAAACCATGATTTTACT+AGG - chr1_2:51478950-51478969 Msa0075880:intron 25.0%
!! GCTTTTATAGTATACTACAT+TGG - chr1_2:51479152-51479171 Msa0075880:intron 25.0%
!! TTTGTGTTTTATCCCAATTT+TGG - chr1_2:51479370-51479389 Msa0075880:intron 25.0%
!! TTGTGTTTTATCCCAATTTT+GGG - chr1_2:51479371-51479390 Msa0075880:intron 25.0%
! TATACCTGAAAAAGATTCAA+CGG + chr1_2:51479429-51479448 None:intergenic 25.0%
!!! TTACTGATTTAACAGAAACA+TGG + chr1_2:51479740-51479759 None:intergenic 25.0%
! GTATCATCTAATTTGAAAAG+TGG + chr1_2:51479798-51479817 None:intergenic 25.0%
! CTTCAGAATCAAATATTATC+TGG + chr1_2:51479864-51479883 None:intergenic 25.0%
! CAGATAATATTTGATTCTGA+AGG - chr1_2:51479862-51479881 Msa0075880:intron 25.0%
! TCTTACTTCTGTTTATCATA+AGG - chr1_2:51480062-51480081 Msa0075880:intron 25.0%
!! AATGCTTTAAATTGCTTATC+CGG - chr1_2:51480098-51480117 Msa0075880:intron 25.0%
!!! TTATAAGTTGATCGTAGAAA+GGG + chr1_2:51480270-51480289 None:intergenic 25.0%
!!! ATTATAAGTTGATCGTAGAA+AGG + chr1_2:51480271-51480290 None:intergenic 25.0%
! ATGACTTAATGTGTTACATT+TGG - chr1_2:51480355-51480374 Msa0075880:intron 25.0%
! TTGGTTTCTTGCTAAAAAAT+TGG - chr1_2:51480374-51480393 Msa0075880:intron 25.0%
! AAATTGGCAAAATATAACCA+TGG - chr1_2:51480390-51480409 Msa0075880:intron 25.0%
!! ACCAACATATGTTGTATTTT+AGG - chr1_2:51480672-51480691 Msa0075880:intron 25.0%
! ACCTAAAATACAACATATGT+TGG + chr1_2:51480676-51480695 Msa0075890:CDS 25.0%
!!! TGTTGTATTTTAGGTTCATA+AGG - chr1_2:51480681-51480700 Msa0075880:intron 25.0%
! AACATGGTTATACAAAATCT+CGG + chr1_2:51480902-51480921 Msa0075890:CDS 25.0%
! TGCAACAATAAACAATAACA+TGG + chr1_2:51480918-51480937 Msa0075890:intron 25.0%
!! TAAAATTATCAGGTTGTATC+TGG + chr1_2:51481013-51481032 Msa0075890:intron 25.0%
!! TGCATATTTAATGATTTGGA+TGG + chr1_2:51481106-51481125 Msa0075890:CDS 25.0%
!!! AATAATTTTTGCTGTGTAGT+TGG - chr1_2:51481289-51481308 Msa0075880:intron 25.0%
! GATATCAGACAATCATATTA+AGG + chr1_2:51481319-51481338 Msa0075890:CDS 25.0%
!!! ATTTTGTTATTCAAAAGGTC+CGG - chr1_2:51481718-51481737 Msa0075880:intron 25.0%
! TTCGTTCATTGTTTATACTT+TGG - chr1_2:51481763-51481782 Msa0075880:intron 25.0%
! CAATAATTTAGATTACAGCT+AGG + chr1_2:51481929-51481948 None:intergenic 25.0%
! GCTGTAATCTAAATTATTGA+TGG - chr1_2:51481930-51481949 Msa0075880:intron 25.0%
!!! ATCACTCATATTTGATTTTG+GGG + chr1_2:51482096-51482115 None:intergenic 25.0%
!!! CTATCACTCATATTTGATTT+TGG + chr1_2:51482098-51482117 None:intergenic 25.0%
! CAAAATCAAATATGAGTGAT+AGG - chr1_2:51482096-51482115 Msa0075880:five_prime_UTR 25.0%
! GCTAACATCTAGAAAAATTA+AGG + chr1_2:51482138-51482157 None:intergenic 25.0%
!!! TAGTGTATATTTTAGCTTGA+AGG - chr1_2:51482185-51482204 Msa0075880:five_prime_UTR 25.0%
!!! ATATTTTAGCTTGAAGGTAT+TGG - chr1_2:51482191-51482210 Msa0075880:five_prime_UTR 25.0%
GAAAGATTTCTATGGTTTGA+AGG + chr1_2:51475837-51475856 None:intergenic 30.0%
TCAGAAAGAACATGGTAATT+TGG - chr1_2:51475958-51475977 Msa0075880:intron 30.0%
CAGAAAGAACATGGTAATTT+GGG - chr1_2:51475959-51475978 Msa0075880:intron 30.0%
AGAAAGAACATGGTAATTTG+GGG - chr1_2:51475960-51475979 Msa0075880:intron 30.0%
AATAATGAGGAATAAGGGAA+GGG + chr1_2:51476076-51476095 None:intergenic 30.0%
AAATAATGAGGAATAAGGGA+AGG + chr1_2:51476077-51476096 None:intergenic 30.0%
! TCCCTTATTCCTCATTATTT+TGG - chr1_2:51476077-51476096 Msa0075880:CDS 30.0%
CCCAAAATAATGAGGAATAA+GGG + chr1_2:51476081-51476100 None:intergenic 30.0%
! CCCTTATTCCTCATTATTTT+GGG - chr1_2:51476078-51476097 Msa0075880:CDS 30.0%
TCCCAAAATAATGAGGAATA+AGG + chr1_2:51476082-51476101 None:intergenic 30.0%
!!! TCCTCATTATTTTGGGATTA+AGG - chr1_2:51476085-51476104 Msa0075880:intron 30.0%
!!! CCTCATTATTTTGGGATTAA+GGG - chr1_2:51476086-51476105 Msa0075880:intron 30.0%
! ATGTTGTTTAGATGTCTAAC+AGG - chr1_2:51476328-51476347 Msa0075880:intron 30.0%
TTTAGATGTCTAACAGGTTA+AGG - chr1_2:51476334-51476353 Msa0075880:intron 30.0%
TTAGATGTCTAACAGGTTAA+GGG - chr1_2:51476335-51476354 Msa0075880:intron 30.0%
CAGCTAATAATAATGATCTC+AGG - chr1_2:51476382-51476401 Msa0075880:intron 30.0%
ACAATCAACATCACAAAACA+TGG + chr1_2:51476435-51476454 None:intergenic 30.0%
!! TTTTGTGATGTTGATTGTAC+TGG - chr1_2:51476437-51476456 Msa0075880:intron 30.0%
AATCTTCCCTACATATTTGT+TGG + chr1_2:51476673-51476692 None:intergenic 30.0%
TTATTCAATTAAGTACCAGC+AGG - chr1_2:51476887-51476906 Msa0075880:CDS 30.0%
! AACTTTCAGTAACGATTTTG+TGG - chr1_2:51476972-51476991 Msa0075880:CDS 30.0%
TTATCAAGTCAAGGATTGTT+TGG + chr1_2:51477148-51477167 None:intergenic 30.0%
!! GATTGATTTTCAGTTAGATG+AGG + chr1_2:51477525-51477544 None:intergenic 30.0%
! TGAATTTTCATAGTAGCAAC+AGG - chr1_2:51477548-51477567 Msa0075880:intron 30.0%
CAATGTAATGAATGAAGAGT+AGG + chr1_2:51477697-51477716 None:intergenic 30.0%
! TGAAGGTGAAACATATTTTG+TGG + chr1_2:51477829-51477848 None:intergenic 30.0%
!!! TGTTTCACCTTCACTTTTTT+AGG - chr1_2:51477836-51477855 Msa0075880:intron 30.0%
AGGTTATCCTAAAAAAGTGA+AGG + chr1_2:51477846-51477865 None:intergenic 30.0%
GCATGATCAAACTCATAAAA+AGG + chr1_2:51477866-51477885 None:intergenic 30.0%
CCCTTACTAAGAATTTCATT+TGG + chr1_2:51478021-51478040 None:intergenic 30.0%
CTCCAAAATATATGCAATTG+TGG + chr1_2:51478061-51478080 None:intergenic 30.0%
!! AGTGAAGTTCAAAGTGTTTT+GGG - chr1_2:51478106-51478125 Msa0075880:exon 30.0%
CATGATATGTTAGGTTTAGT+GGG - chr1_2:51478150-51478169 Msa0075880:five_prime_UTR 30.0%
GATAACTATAAAAAGCTTGC+CGG + chr1_2:51478187-51478206 None:intergenic 30.0%
ATGAATAAGAAGAACCAGAA+AGG - chr1_2:51478229-51478248 Msa0075880:intron 30.0%
!! AGTGATAAGTTGATGTTTGT+AGG - chr1_2:51478435-51478454 Msa0075880:intron 30.0%
TAAGGTGAAGAGATTAGTAA+AGG - chr1_2:51478515-51478534 Msa0075880:intron 30.0%
! AAAGGTCTTATATTTAGGGA+CGG + chr1_2:51478688-51478707 None:intergenic 30.0%
ATGTACTTGGGAATATCAAA+GGG + chr1_2:51478743-51478762 None:intergenic 30.0%
TATGTACTTGGGAATATCAA+AGG + chr1_2:51478744-51478763 None:intergenic 30.0%
!!! ATTCCCGTTATTTTTCCAAA+AGG - chr1_2:51478894-51478913 Msa0075880:intron 30.0%
!!! TTCCCGTTATTTTTCCAAAA+GGG - chr1_2:51478895-51478914 Msa0075880:intron 30.0%
AAAGTCTTAGGTATCAGTTA+CGG - chr1_2:51479098-51479117 Msa0075880:intron 30.0%
TACTATAAAAGCTTTGCAAG+TGG + chr1_2:51479144-51479163 None:intergenic 30.0%
!!! GTTGAATCTTTTTCAGGTAT+AGG - chr1_2:51479428-51479447 Msa0075880:intron 30.0%
AACAGAAACATGGAAAGAAA+AGG + chr1_2:51479730-51479749 None:intergenic 30.0%
! TCCTACTTCTATAATTTTGC+TGG - chr1_2:51479919-51479938 Msa0075880:intron 30.0%
ACCAGCAAAATTATAGAAGT+AGG + chr1_2:51479923-51479942 None:intergenic 30.0%
CGATCAACTTATAATTCACA+TGG - chr1_2:51480276-51480295 Msa0075880:intron 30.0%
! TCACATGGATTTGTTTCATT+AGG - chr1_2:51480291-51480310 Msa0075880:intron 30.0%
TTAGGAACATCATAACATCA+AGG - chr1_2:51480578-51480597 Msa0075880:intron 30.0%
AGCATATCATTCATAAATCC+TGG - chr1_2:51480754-51480773 Msa0075880:intron 30.0%
CAAAATCTCGGTAATTGTAT+CGG + chr1_2:51480890-51480909 Msa0075890:CDS 30.0%
TTTATAGTATGTACTGCTCT+AGG - chr1_2:51481029-51481048 Msa0075880:intron 30.0%
GTTGAGAAAAAATCTATCAC+AGG + chr1_2:51481414-51481433 Msa0075890:CDS 30.0%
TTCAATACATGCATATGTAC+AGG - chr1_2:51481501-51481520 Msa0075880:intron 30.0%
GTTGAGAAAAAATCTATCAC+AGG + chr1_2:51481414-51481433 Msa0075890:CDS 30.0%
TTCAATACATGCATATGTAC+AGG - chr1_2:51481501-51481520 Msa0075880:intron 30.0%
! TGTTTATACTTTGGCTCATT+TGG - chr1_2:51481772-51481791 Msa0075880:intron 30.0%
! ATCTGATTTGAAACAAGCTT+TGG - chr1_2:51481975-51481994 Msa0075880:intron 30.0%
!! GTATTAGAAGCTGATTTGAA+AGG - chr1_2:51482000-51482019 Msa0075880:intron 30.0%
! CATAGTTCAAGAAGCAATTT+TGG - chr1_2:51482029-51482048 Msa0075880:intron 30.0%
AGATTTCTATGGTTTGAAGG+TGG + chr1_2:51475834-51475853 None:intergenic 35.0%
! TTATAGCCTTAGGATGGATT+GGG + chr1_2:51475882-51475901 None:intergenic 35.0%
! ATTATAGCCTTAGGATGGAT+TGG + chr1_2:51475883-51475902 None:intergenic 35.0%
GAAAGAACATGGTAATTTGG+GGG - chr1_2:51475961-51475980 Msa0075880:intron 35.0%
AAAGAACATGGTAATTTGGG+GGG - chr1_2:51475962-51475981 Msa0075880:intron 35.0%
AGAAGAAAAGTTGGGAATCA+AGG - chr1_2:51475999-51476018 Msa0075880:exon 35.0%
CCCTTAATCCCAAAATAATG+AGG + chr1_2:51476089-51476108 None:intergenic 35.0%
TGGGATTAAGGGTTTGAATT+TGG - chr1_2:51476097-51476116 Msa0075880:intron 35.0%
GGGATTAAGGGTTTGAATTT+GGG - chr1_2:51476098-51476117 Msa0075880:intron 35.0%
!! AAGGGTTTGAATTTGGGTTT+TGG - chr1_2:51476104-51476123 Msa0075880:intron 35.0%
!! AGGGTTTGAATTTGGGTTTT+GGG - chr1_2:51476105-51476124 Msa0075880:intron 35.0%
TAGATGTCTAACAGGTTAAG+GGG - chr1_2:51476336-51476355 Msa0075880:intron 35.0%
TCGAATATGTCAAAGCGAAA+TGG + chr1_2:51476552-51476571 None:intergenic 35.0%
AAGCAGAGTTTGAAGAAGAA+AGG + chr1_2:51476601-51476620 None:intergenic 35.0%
ACACTTGCCAACAAATATGT+AGG - chr1_2:51476663-51476682 Msa0075880:intron 35.0%
CACTTGCCAACAAATATGTA+GGG - chr1_2:51476664-51476683 Msa0075880:intron 35.0%
ATAGATGTGATGAATGGGAA+TGG + chr1_2:51476775-51476794 None:intergenic 35.0%
TTCCCAACGCAATTTACAAA+CGG - chr1_2:51476925-51476944 Msa0075880:CDS 35.0%
TTCCGTTTGTAAATTGCGTT+GGG + chr1_2:51476930-51476949 None:intergenic 35.0%
!! ACTGAAAGTTTGTTAGCTCT+TGG + chr1_2:51476962-51476981 None:intergenic 35.0%
! CTAAAACGCGTTTTTCGTTT+TGG + chr1_2:51477103-51477122 None:intergenic 35.0%
AGTGGAAGTTTATCAAGTCA+AGG + chr1_2:51477157-51477176 None:intergenic 35.0%
TGTGAAATACTCAAGGTAAG+TGG + chr1_2:51477175-51477194 None:intergenic 35.0%
!!! TGTTTTGAGAATTTCTGCAC+TGG + chr1_2:51477437-51477456 None:intergenic 35.0%
TGCAGAAATTCTCAAAACAC+CGG - chr1_2:51477438-51477457 Msa0075880:intron 35.0%
CCATTGATCTCAGAATGTAA+TGG + chr1_2:51477649-51477668 None:intergenic 35.0%
!! CCATTACATTCTGAGATCAA+TGG - chr1_2:51477646-51477665 Msa0075880:intron 35.0%
! TGAATGAAGAGTAGGTTGAA+GGG + chr1_2:51477689-51477708 None:intergenic 35.0%
! ATGAATGAAGAGTAGGTTGA+AGG + chr1_2:51477690-51477709 None:intergenic 35.0%
TGAAATTCTTAGTAAGGGTG+TGG - chr1_2:51478023-51478042 Msa0075880:intron 35.0%
!! CAGTGAAGTTCAAAGTGTTT+TGG - chr1_2:51478105-51478124 Msa0075880:CDS 35.0%
GATAGTAGGCATGATATGTT+AGG - chr1_2:51478141-51478160 Msa0075880:five_prime_UTR 35.0%
GCATGATATGTTAGGTTTAG+TGG - chr1_2:51478149-51478168 Msa0075880:five_prime_UTR 35.0%
AATCTAAAGGTTCCATTGAC+CGG + chr1_2:51478478-51478497 None:intergenic 35.0%
TGTACTTGGGAATATCAAAG+GGG + chr1_2:51478742-51478761 None:intergenic 35.0%
TACCTCCATCCCTAATTATA+GGG + chr1_2:51478921-51478940 None:intergenic 35.0%
! ACCATGATTTTACTAGGTTG+TGG - chr1_2:51478956-51478975 Msa0075880:intron 35.0%
ACCACAACCTAGTAAAATCA+TGG + chr1_2:51478960-51478979 None:intergenic 35.0%
AAAAGATACTTTCTCTGCCT+AGG + chr1_2:51478990-51479009 None:intergenic 35.0%
ATTGGCATAACGAATCATGT+TGG - chr1_2:51479170-51479189 Msa0075880:intron 35.0%
TTGGCATAACGAATCATGTT+GGG - chr1_2:51479171-51479190 Msa0075880:intron 35.0%
TAACCCACATCCAAATGATT+TGG - chr1_2:51479194-51479213 Msa0075880:intron 35.0%
!! ATCGATCAGTTGTTTTACCA+AGG - chr1_2:51479273-51479292 Msa0075880:intron 35.0%
!! TCGATCAGTTGTTTTACCAA+GGG - chr1_2:51479274-51479293 Msa0075880:intron 35.0%
CTCAATGAGTTCCCAAAATT+GGG + chr1_2:51479385-51479404 None:intergenic 35.0%
TGAAAAAGATTCAACGGAGT+GGG + chr1_2:51479423-51479442 None:intergenic 35.0%
!!! TTTTCAGGTATAGGCCATTT+TGG - chr1_2:51479437-51479456 Msa0075880:intron 35.0%
!!! TAGGCCATTTTGGAGTTATT+CGG - chr1_2:51479447-51479466 Msa0075880:intron 35.0%
TTCTTGAGTGAGATTTCTGT+TGG + chr1_2:51479957-51479976 None:intergenic 35.0%
! ACAATGCTGGGATTTTCATT+TGG - chr1_2:51479983-51480002 Msa0075880:intron 35.0%
! TGGAGAAATATTTCTGTTGC+TGG - chr1_2:51480003-51480022 Msa0075880:intron 35.0%
! GGAGAAATATTTCTGTTGCT+GGG - chr1_2:51480004-51480023 Msa0075880:intron 35.0%
! CCTATTGCACATTCATTTTC+CGG + chr1_2:51480120-51480139 None:intergenic 35.0%
GATATCATTGGCAAATCCTT+TGG + chr1_2:51480144-51480163 None:intergenic 35.0%
TAACAGAATCAAACTGTCCA+CGG + chr1_2:51480218-51480237 None:intergenic 35.0%
AAAGTGAATCGCATGTAGTT+GGG + chr1_2:51480519-51480538 None:intergenic 35.0%
!! GACTTTACCACGTTTTAGTA+TGG + chr1_2:51480613-51480632 Msa0075890:CDS 35.0%
TTAGGTTCATAAGGAACTTC+AGG - chr1_2:51480690-51480709 Msa0075880:intron 35.0%
TAAGGAACTTCAGGAAACAA+TGG - chr1_2:51480699-51480718 Msa0075880:intron 35.0%
ACAGAAAACCTGAATATGCT+GGG - chr1_2:51480948-51480967 Msa0075880:intron 35.0%
TCAATAAACCTTGGTATGAG+AGG + chr1_2:51480990-51481009 Msa0075890:intron 35.0%
TGTATCTGGTCAATAAACCT+TGG + chr1_2:51480999-51481018 Msa0075890:intron 35.0%
ATGAACCATTCTTTATGGCA+GGG + chr1_2:51481165-51481184 Msa0075890:CDS 35.0%
TGCCATAAAGAATGGTTCAT+CGG - chr1_2:51481165-51481184 Msa0075880:intron 35.0%
GAAGTTGAGGATGTTAAAGT+TGG - chr1_2:51481199-51481218 Msa0075880:intron 35.0%
TTGTGATCCTGTGATGTTTA+TGG - chr1_2:51481462-51481481 Msa0075880:intron 35.0%
AAGAAAGCCATAAACATCAC+AGG + chr1_2:51481472-51481491 Msa0075890:CDS 35.0%
TTGTGATCCTGTGATGTTTA+TGG - chr1_2:51481462-51481481 Msa0075880:intron 35.0%
AAGAAAGCCATAAACATCAC+AGG + chr1_2:51481472-51481491 Msa0075890:CDS 35.0%
CAAGCAAAAACCTTAACTTC+CGG + chr1_2:51481740-51481759 None:intergenic 35.0%
! AGTTCAAGAAGCAATTTTGG+AGG - chr1_2:51482032-51482051 Msa0075880:intron 35.0%
TTGAAGGTGGAAGAAGATGA+TGG + chr1_2:51475821-51475840 None:intergenic 40.0%
AAATCACCCAATCCATCCTA+AGG - chr1_2:51475873-51475892 Msa0075880:three_prime_UTR 40.0%
CTAGGGTTTCAGAAAGAACA+TGG - chr1_2:51475950-51475969 Msa0075880:intron 40.0%
AATGGCTCTCATCTTACACA+CGG + chr1_2:51476534-51476553 None:intergenic 40.0%
!! TGATCGTTTACAGAGTATCG+TGG + chr1_2:51476644-51476663 None:intergenic 40.0%
ATGTGATGAATGGGAATGGA+AGG + chr1_2:51476771-51476790 None:intergenic 40.0%
AAATCCTCTTCATATCCTGC+TGG + chr1_2:51476905-51476924 None:intergenic 40.0%
CTTCCGTTTGTAAATTGCGT+TGG + chr1_2:51476931-51476950 None:intergenic 40.0%
CGAAGCATGTGAAATACTCA+AGG + chr1_2:51477182-51477201 None:intergenic 40.0%
!!! GTTTTAGCTTCTGTCAAGTG+TGG + chr1_2:51477289-51477308 None:intergenic 40.0%
!!! TGTTGATTTTGAACCGAGCT+CGG + chr1_2:51477368-51477387 None:intergenic 40.0%
TTGTTAAGTCACGGCTAAAG+CGG + chr1_2:51477483-51477502 None:intergenic 40.0%
TTTAGCCGTGACTTAACAAC+CGG - chr1_2:51477484-51477503 Msa0075880:intron 40.0%
TTAAGCCGGTTGTTAAGTCA+CGG + chr1_2:51477492-51477511 None:intergenic 40.0%
TGAAGGGAAAATGAGATGGA+TGG + chr1_2:51477673-51477692 None:intergenic 40.0%
AGGTTGAAGGGAAAATGAGA+TGG + chr1_2:51477677-51477696 None:intergenic 40.0%
!!! ACAGAGAGTGGTCTAGTTTT+TGG - chr1_2:51477975-51477994 Msa0075880:intron 40.0%
!!! CAGAGAGTGGTCTAGTTTTT+GGG - chr1_2:51477976-51477995 Msa0075880:intron 40.0%
! TTGGGTGAAAAGTGTGTAAC+AGG - chr1_2:51477994-51478013 Msa0075880:intron 40.0%
!!! CAAAGTGTTTTGGGAGACAA+AGG - chr1_2:51478115-51478134 Msa0075880:exon 40.0%
GGAGACAAAGGATAGATAGT+AGG - chr1_2:51478127-51478146 Msa0075880:five_prime_UTR 40.0%
GGCATTGCTATATATTGCGA+CGG + chr1_2:51478349-51478368 None:intergenic 40.0%
ACACTAACCCTCTCTCTTAA+AGG - chr1_2:51478811-51478830 Msa0075880:intron 40.0%
!! GGCCCTTTTGGAAAAATAAC+GGG + chr1_2:51478900-51478919 None:intergenic 40.0%
!! GGGCCCTTTTGGAAAAATAA+CGG + chr1_2:51478901-51478920 None:intergenic 40.0%
TCCAAAAGGGCCCTATAATT+AGG - chr1_2:51478908-51478927 Msa0075880:intron 40.0%
CCAAAAGGGCCCTATAATTA+GGG - chr1_2:51478909-51478928 Msa0075880:intron 40.0%
CTACCTCCATCCCTAATTAT+AGG + chr1_2:51478922-51478941 None:intergenic 40.0%
TGAGGCAGAAATAGAAGCTA+AGG - chr1_2:51479057-51479076 Msa0075880:intron 40.0%
TAGAAGCTAAGGCAATTCTC+TGG - chr1_2:51479068-51479087 Msa0075880:intron 40.0%
AGAAGCTAAGGCAATTCTCT+GGG - chr1_2:51479069-51479088 Msa0075880:intron 40.0%
TTAGGTATCAGTTACGGTGT+AGG - chr1_2:51479104-51479123 Msa0075880:intron 40.0%
GTGCCAAATCATTTGGATGT+GGG + chr1_2:51479200-51479219 None:intergenic 40.0%
TGTGCCAAATCATTTGGATG+TGG + chr1_2:51479201-51479220 None:intergenic 40.0%
TTTGCGTGTGCCAAATCATT+TGG + chr1_2:51479207-51479226 None:intergenic 40.0%
GCTCAATGAGTTCCCAAAAT+TGG + chr1_2:51479386-51479405 None:intergenic 40.0%
CTGAAAAAGATTCAACGGAG+TGG + chr1_2:51479424-51479443 None:intergenic 40.0%
! CACTCCGTTGAATCTTTTTC+AGG - chr1_2:51479422-51479441 Msa0075880:intron 40.0%
TAACTCTAGACACTGTGATC+TGG + chr1_2:51479475-51479494 None:intergenic 40.0%
! AGATCACAGTGTCTAGAGTT+AGG - chr1_2:51479474-51479493 Msa0075880:intron 40.0%
AGGAGGTTAAACTACAACTG+AGG + chr1_2:51479503-51479522 None:intergenic 40.0%
TCAGCCACATGTTACAAAGA+GGG + chr1_2:51479526-51479545 None:intergenic 40.0%
ATCAGCCACATGTTACAAAG+AGG + chr1_2:51479527-51479546 None:intergenic 40.0%
CACTCTACATTGATCAGCAT+CGG - chr1_2:51479894-51479913 Msa0075880:intron 40.0%
TCAAGAACACTGAACAATGC+TGG - chr1_2:51479970-51479989 Msa0075880:intron 40.0%
CAAGAACACTGAACAATGCT+GGG - chr1_2:51479971-51479990 Msa0075880:intron 40.0%
CCGGAAAATGAATGTGCAAT+AGG - chr1_2:51480117-51480136 Msa0075880:intron 40.0%
TGAATGTGCAATAGGTCCAA+AGG - chr1_2:51480125-51480144 Msa0075880:intron 40.0%
CAATGATATCCAGAACAGCA+GGG - chr1_2:51480154-51480173 Msa0075880:intron 40.0%
GGCAGTTGGATATGTACAAT+TGG - chr1_2:51480191-51480210 Msa0075880:intron 40.0%
AACAGAATCAAACTGTCCAC+GGG + chr1_2:51480217-51480236 None:intergenic 40.0%
!! TAAGTTGATCGTAGAAAGGG+AGG + chr1_2:51480267-51480286 None:intergenic 40.0%
CAAAGTGAATCGCATGTAGT+TGG + chr1_2:51480520-51480539 None:intergenic 40.0%
!! TACCACGTTTTAGTATGGAC+AGG + chr1_2:51480608-51480627 Msa0075890:CDS 40.0%
GCTTCCAATTTCATGACGAA+TGG + chr1_2:51480737-51480756 Msa0075890:CDS 40.0%
GACAGAAAACCTGAATATGC+TGG - chr1_2:51480947-51480966 Msa0075880:intron 40.0%
CAGAAAACCTGAATATGCTG+GGG - chr1_2:51480949-51480968 Msa0075880:intron 40.0%
TTATTCACCCCAGCATATTC+AGG + chr1_2:51480959-51480978 Msa0075890:intron 40.0%
CTCAATATCCTCTCATACCA+AGG - chr1_2:51480979-51480998 Msa0075880:intron 40.0%
AGCAACTGCTTATGCAAGTT+TGG - chr1_2:51481132-51481151 Msa0075880:intron 40.0%
TGAACCATTCTTTATGGCAG+GGG + chr1_2:51481164-51481183 Msa0075890:CDS 40.0%
GATGAACCATTCTTTATGGC+AGG + chr1_2:51481166-51481185 Msa0075890:CDS 40.0%
TGCCGATGAACCATTCTTTA+TGG + chr1_2:51481170-51481189 Msa0075890:CDS 40.0%
! CCAGTATTTTCAGCAGAAAC+TGG + chr1_2:51481244-51481263 Msa0075890:intron 40.0%
CCAGTTTCTGCTGAAAATAC+TGG - chr1_2:51481241-51481260 Msa0075880:intron 40.0%
TTATTATTACCCCCGCGATT+TGG + chr1_2:51481274-51481293 Msa0075890:intron 40.0%
TTCAAAAGGTCCGGAAGTTA+AGG - chr1_2:51481727-51481746 Msa0075880:intron 40.0%
AGAGGTAGCTCATAATGCAA+AGG - chr1_2:51482056-51482075 Msa0075880:five_prime_UTR 40.0%
GTTACCAGTTCTTGTTCTTC+AGG - chr1_2:51482272-51482291 Msa0075880:five_prime_UTR 40.0%
CTTCAGGACAGAAAATCTCA+AGG - chr1_2:51482288-51482307 Msa0075880:five_prime_UTR 40.0%
ACATATTCGACTCTCCTCCA+CGG - chr1_2:51476562-51476581 Msa0075880:intron 45.0%
TATCGTGGCTATTGTATCCG+AGG + chr1_2:51476629-51476648 None:intergenic 45.0%
AGTACCAGCAGGATATGAAG+AGG - chr1_2:51476898-51476917 Msa0075880:CDS 45.0%
!! TTTTCGTTTTGGACAGGGGT+TGG + chr1_2:51477092-51477111 None:intergenic 45.0%
!! GCGTTTTTCGTTTTGGACAG+GGG + chr1_2:51477096-51477115 None:intergenic 45.0%
!! CGCGTTTTTCGTTTTGGACA+GGG + chr1_2:51477097-51477116 None:intergenic 45.0%
!! ACGCGTTTTTCGTTTTGGAC+AGG + chr1_2:51477098-51477117 None:intergenic 45.0%
! AATGGTGACGAACTACATCG+AGG + chr1_2:51477332-51477351 None:intergenic 45.0%
ACAGCTTCTCTGCATAAACG+CGG - chr1_2:51477385-51477404 Msa0075880:CDS 45.0%
GAAGATCACTGGTGGTAGTT+TGG + chr1_2:51477413-51477432 None:intergenic 45.0%
! GACTTAACAACCGGCTTAAC+CGG - chr1_2:51477493-51477512 Msa0075880:intron 45.0%
CAGTTAGATGAGGAGAGAAC+CGG + chr1_2:51477515-51477534 None:intergenic 45.0%
! TGTTAGGTTTAGTGGGCAAC+AGG - chr1_2:51478157-51478176 Msa0075880:five_prime_UTR 45.0%
! GGTCTTATATTTAGGGACGG+AGG + chr1_2:51478685-51478704 None:intergenic 45.0%
! CCCTAATTATAGGGCCCTTT+TGG + chr1_2:51478912-51478931 None:intergenic 45.0%
AAGGGCCCTATAATTAGGGA+TGG - chr1_2:51478913-51478932 Msa0075880:intron 45.0%
AGGTTGTGGTAATCACACCT+AGG - chr1_2:51478970-51478989 Msa0075880:intron 45.0%
GGCTCCGAATAACTCCAAAA+TGG + chr1_2:51479454-51479473 None:intergenic 45.0%
ACATGTTACAAAGAGGGAGG+AGG + chr1_2:51479520-51479539 None:intergenic 45.0%
TCCTCCCTCTTTGTAACATG+TGG - chr1_2:51479519-51479538 Msa0075880:intron 45.0%
GAGTGAGATTTCTGTTGGAG+AGG + chr1_2:51479952-51479971 None:intergenic 45.0%
! CCTGCTGTTCTGGATATCAT+TGG + chr1_2:51480156-51480175 None:intergenic 45.0%
CCAATGATATCCAGAACAGC+AGG - chr1_2:51480153-51480172 Msa0075880:intron 45.0%
TGCCTGTCCATACTAAAACG+TGG - chr1_2:51480603-51480622 Msa0075880:intron 45.0%
GAGGCCATTCGTCATGAAAT+TGG - chr1_2:51480730-51480749 Msa0075880:intron 45.0%
TAAATCCTGGCCCATCAACT+CGG - chr1_2:51480767-51480786 Msa0075880:intron 45.0%
!! TATCATGCCTCCGAGTTGAT+GGG + chr1_2:51480780-51480799 Msa0075890:CDS 45.0%
! TTATCATGCCTCCGAGTTGA+TGG + chr1_2:51480781-51480800 Msa0075890:CDS 45.0%
GAGGCATGATAATCTTGACC+AGG - chr1_2:51480789-51480808 Msa0075880:intron 45.0%
! TACCATCTGAGATAGATGCC+TGG + chr1_2:51480810-51480829 Msa0075890:CDS 45.0%
TGCTTATGCAAGTTTGGCAC+AGG - chr1_2:51481138-51481157 Msa0075880:intron 45.0%
! GGCAAATAGCACTGAAGTTG+AGG - chr1_2:51481186-51481205 Msa0075880:intron 45.0%
ACTGGACTCTTACCAAATCG+CGG - chr1_2:51481259-51481278 Msa0075880:intron 45.0%
!! AGAAGCAATTTTGGAGGCAG+AGG - chr1_2:51482038-51482057 Msa0075880:intron 45.0%
CTGTCCTGAAGAACAAGAAC+TGG + chr1_2:51482279-51482298 None:intergenic 45.0%
ACGCACGTCTGATTCTTCGT+CGG - chr1_2:51477219-51477238 Msa0075880:intron 50.0%
CTCGGCGTGTTTGGCAAAAA+TGG + chr1_2:51477350-51477369 None:intergenic 50.0%
TCTGCACTGGAGAAGATCAC+TGG + chr1_2:51477424-51477443 None:intergenic 50.0%
CTCATCGAGCGACAATTCTC+CGG + chr1_2:51477460-51477479 None:intergenic 50.0%
GAAGTGAGAGAGACAGAGAG+TGG - chr1_2:51477963-51477982 Msa0075880:intron 50.0%
! TAGGTTTAGTGGGCAACAGG+TGG - chr1_2:51478160-51478179 Msa0075880:five_prime_UTR 50.0%
GGTGCATTCAGAGACTTAGC+CGG - chr1_2:51478456-51478475 Msa0075880:intron 50.0%
TCAGAGACTTAGCCGGTCAA+TGG - chr1_2:51478463-51478482 Msa0075880:intron 50.0%
GGCCCTATAATTAGGGATGG+AGG - chr1_2:51478916-51478935 Msa0075880:intron 50.0%
! TATGCGACTAGCCAGTGTCA+CGG - chr1_2:51479029-51479048 Msa0075880:intron 50.0%
TAAGGCAATTCTCTGGGCAG+AGG - chr1_2:51479075-51479094 Msa0075880:intron 50.0%
TCTGGGCAGAGGAAAGTCTT+AGG - chr1_2:51479086-51479105 Msa0075880:intron 50.0%
GTATCAGTTACGGTGTAGGC+AGG - chr1_2:51479108-51479127 Msa0075880:intron 50.0%
GCCACATGTTACAAAGAGGG+AGG + chr1_2:51479523-51479542 None:intergenic 50.0%
CTACTGCTGCTGTGATTGGT+TGG - chr1_2:51480029-51480048 Msa0075880:intron 50.0%
TGATATCCAGAACAGCAGGG+AGG - chr1_2:51480157-51480176 Msa0075880:intron 50.0%
GGATATGTACAATTGGCCCG+TGG - chr1_2:51480198-51480217 Msa0075880:intron 50.0%
GCAGCGATCTCAAGTTAACC+AGG - chr1_2:51480239-51480258 Msa0075880:intron 50.0%
!! ATCGTAGAAAGGGAGGTACC+TGG + chr1_2:51480260-51480279 None:intergenic 50.0%
GGAAACAATGGCACAGCTAG+AGG - chr1_2:51480711-51480730 Msa0075880:intron 50.0%
GACCAGGCATCTATCTCAGA+TGG - chr1_2:51480805-51480824 Msa0075880:intron 50.0%
CTGGACTCTTACCAAATCGC+GGG - chr1_2:51481260-51481279 Msa0075880:intron 50.0%
TGGACTCTTACCAAATCGCG+GGG - chr1_2:51481261-51481280 Msa0075880:intron 50.0%
TATTCGACTCTCCTCCACGG+TGG - chr1_2:51476565-51476584 Msa0075880:intron 55.0%
AAGGAATGCCAGTTCCACCG+TGG + chr1_2:51476582-51476601 None:intergenic 55.0%
CAAACTCTGCTTCACCGCCT+CGG - chr1_2:51476609-51476628 Msa0075880:intron 55.0%
CGTGGCTATTGTATCCGAGG+CGG + chr1_2:51476626-51476645 None:intergenic 55.0%
GACGAAGAATCAGACGTGCG+TGG + chr1_2:51477220-51477239 None:intergenic 55.0%
TTTGCCAAACACGCCGAGCT+CGG - chr1_2:51477352-51477371 Msa0075880:CDS 55.0%
GCACTGGAGAAGATCACTGG+TGG + chr1_2:51477421-51477440 None:intergenic 55.0%
GAGGAGAGAACCGGTTAAGC+CGG + chr1_2:51477506-51477525 None:intergenic 55.0%
! TTAGTGGGCAACAGGTGGTC+CGG - chr1_2:51478165-51478184 Msa0075880:five_prime_UTR 55.0%
GCCAGTGTCACGGTAAAGTG+AGG - chr1_2:51479039-51479058 Msa0075880:intron 55.0%
GCCTCACTTTACCGTGACAC+TGG + chr1_2:51479043-51479062 None:intergenic 55.0%
TTACGGTGTAGGCAGGCAGT+GGG - chr1_2:51479115-51479134 Msa0075880:intron 55.0%
GGAGCTACTGCTGCTGTGAT+TGG - chr1_2:51480025-51480044 Msa0075880:intron 55.0%
CAGGCCCCTGCCATAAAGAA+TGG - chr1_2:51481157-51481176 Msa0075880:intron 55.0%
GGACTCTTACCAAATCGCGG+GGG - chr1_2:51481262-51481281 Msa0075880:intron 55.0%
ACTCTCCTCCACGGTGGAAC+TGG - chr1_2:51476571-51476590 Msa0075880:intron 60.0%
GAATGCCAGTTCCACCGTGG+AGG + chr1_2:51476579-51476598 None:intergenic 60.0%
TGAACCGAGCTCGGCGTGTT+TGG + chr1_2:51477359-51477378 None:intergenic 60.0%
GTTACGGTGTAGGCAGGCAG+TGG - chr1_2:51479114-51479133 Msa0075880:intron 60.0%
TACGGTGTAGGCAGGCAGTG+GGG - chr1_2:51479116-51479135 Msa0075880:intron 60.0%
! AGCTAGCCTCCCTGCTGTTC+TGG + chr1_2:51480166-51480185 None:intergenic 60.0%
AGAACAGCAGGGAGGCTAGC+TGG - chr1_2:51480165-51480184 Msa0075880:intron 60.0%
ATCCTGGCCCATCAACTCGG+AGG - chr1_2:51480770-51480789 Msa0075880:intron 60.0%
! CAGCAGGGAGGCTAGCTGGA+CGG - chr1_2:51480169-51480188 Msa0075880:intron 65.0%
! AGCAGGGAGGCTAGCTGGAC+GGG - chr1_2:51480170-51480189 Msa0075880:intron 65.0%
! AGGCTAGCTGGACGGGCAGT+TGG - chr1_2:51480177-51480196 Msa0075880:intron 65.0%
!! TGCCTCCGAGTTGATGGGCC+AGG + chr1_2:51480775-51480794 Msa0075890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51475780 51482330 51475780 ID=Msa0075880;Name=Msa0075880
chr1_2 mRNA 51475780 51482330 51475780 ID=Msa0075880-mRNA-1;Parent=Msa0075880;Name=Msa0075880-mRNA-1;_AED=0.23;_eAED=0.23;_QI=450|1|1|1|0.62|0.44|9|146|223
chr1_2 exon 51475780 51475922 51475780 ID=Msa0075880-mRNA-1:exon:15884;Parent=Msa0075880-mRNA-1
chr1_2 exon 51475997 51476103 51475997 ID=Msa0075880-mRNA-1:exon:15883;Parent=Msa0075880-mRNA-1
chr1_2 exon 51476827 51477022 51476827 ID=Msa0075880-mRNA-1:exon:15882;Parent=Msa0075880-mRNA-1
chr1_2 exon 51477110 51477165 51477110 ID=Msa0075880-mRNA-1:exon:15881;Parent=Msa0075880-mRNA-1
chr1_2 exon 51477284 51477416 51477284 ID=Msa0075880-mRNA-1:exon:15880;Parent=Msa0075880-mRNA-1
chr1_2 exon 51477850 51477971 51477850 ID=Msa0075880-mRNA-1:exon:15879;Parent=Msa0075880-mRNA-1
chr1_2 exon 51478064 51478226 51478064 ID=Msa0075880-mRNA-1:exon:15878;Parent=Msa0075880-mRNA-1
chr1_2 exon 51479592 51479653 51479592 ID=Msa0075880-mRNA-1:exon:15877;Parent=Msa0075880-mRNA-1
chr1_2 exon 51482045 51482330 51482045 ID=Msa0075880-mRNA-1:exon:15876;Parent=Msa0075880-mRNA-1
chr1_2 five_prime_UTR 51482045 51482330 51482045 ID=Msa0075880-mRNA-1:five_prime_utr;Parent=Msa0075880-mRNA-1
chr1_2 five_prime_UTR 51479592 51479653 51479592 ID=Msa0075880-mRNA-1:five_prime_utr;Parent=Msa0075880-mRNA-1
chr1_2 five_prime_UTR 51478125 51478226 51478125 ID=Msa0075880-mRNA-1:five_prime_utr;Parent=Msa0075880-mRNA-1
chr1_2 CDS 51478064 51478124 51478064 ID=Msa0075880-mRNA-1:cds;Parent=Msa0075880-mRNA-1
chr1_2 CDS 51477850 51477971 51477850 ID=Msa0075880-mRNA-1:cds;Parent=Msa0075880-mRNA-1
chr1_2 CDS 51477284 51477416 51477284 ID=Msa0075880-mRNA-1:cds;Parent=Msa0075880-mRNA-1
chr1_2 CDS 51477110 51477165 51477110 ID=Msa0075880-mRNA-1:cds;Parent=Msa0075880-mRNA-1
chr1_2 CDS 51476827 51477022 51476827 ID=Msa0075880-mRNA-1:cds;Parent=Msa0075880-mRNA-1
chr1_2 CDS 51476000 51476103 51476000 ID=Msa0075880-mRNA-1:cds;Parent=Msa0075880-mRNA-1
chr1_2 three_prime_UTR 51475997 51475999 51475997 ID=Msa0075880-mRNA-1:three_prime_utr;Parent=Msa0075880-mRNA-1
chr1_2 three_prime_UTR 51475780 51475922 51475780 ID=Msa0075880-mRNA-1:three_prime_utr;Parent=Msa0075880-mRNA-1
Gene Sequence

>Msa0075880

ATGCTGGGATTTTCATTTGGAGAAATATTTCTGTTGCTGGGAGCTACTGCTGCTGTGATTGGTCCAAAGGATTTGCCAATGATATCCAGAACAGCAGGGAGGCTAGCTGGACGGGCAGTTGGATATGTACAATTGGCCCGTGGACAGTTTGATTCTGTTATGCAGCGATCTCAAGTTAACCAGGTTCATAAGGAACTTCAGGAAACAATGGCACAGCTAGAGGCCATTCGTCATGAAATTGGAAGCATATCATTCATAAATCCTGGCCCATCAACTCGGAGGCATGATAATCTTGACCAGGCATCTATCTCAGATGACGACAGAAAACCTGAATATGCTGGGGTGAATAACTCAATATCCTCTCATACCAAGGATTCAACTTCATTGCCATCCAAATCATTAAATATGCAAAGTCAAGCAACTGCTTATGCAAGTTTGGCACAGGCCCCTGCCATAAAGAATGGTTCATCGGCAAATAGCACTGAAGTTGAGGATGTTAAAGTTGGTCTGCAGCTTATTGTCATGCCAGTTTCTGCTGAAAATACTGGACTCTTACCAAATCGCGGGGAAGCTGATTTGAAAGGATCTGACATAGTTCAAGAAGCAATTTTGGAGGCAGAGGTAGCTCATAATGCAAAGGAATTCTTTTCACAGCCCCAAAATCAAATATGA

Protein sequence

>Msa0075880

MLGFSFGEIFLLLGATAAVIGPKDLPMISRTAGRLAGRAVGYVQLARGQFDSVMQRSQVNQVHKELQETMAQLEAIRHEIGSISFINPGPSTRRHDNLDQASISDDDRKPEYAGVNNSISSHTKDSTSLPSKSLNMQSQATAYASLAQAPAIKNGSSANSTEVEDVKVGLQLIVMPVSAENTGLLPNRGEADLKGSDIVQEAILEAEVAHNAKEFFSQPQNQI*