AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187250 MtrunA17_Chr1g0192201 99.405 168 1 0 1 168 1 168 1.20e-121 339
Msa0187250 MtrunA17_Chr1g0192171 98.810 168 2 0 1 168 1 168 8.38e-121 337
Msa0187250 MtrunA17_Chr2g0295871 86.905 168 21 1 1 168 1 167 4.20e-104 295
Msa0187250 MtrunA17_Chr6g0479151 81.988 161 28 1 1 161 1 160 1.80e-91 263
Msa0187250 MtrunA17_Chr1g0192161 86.047 129 18 0 19 147 9 137 9.60e-76 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187250 AT3G16640.1 79.167 168 35 0 1 168 1 168 3.19e-97 278
Msa0187250 AT3G05540.1 80.473 169 31 2 1 168 1 168 1.05e-90 261

Find 43 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATATTGTTGACACTTTC+AGG 0.110440 2_1:-1926131 Msa0187250:CDS
TTTAAATTGATGTTCTTAAT+TGG 0.245351 2_1:-1925691 Msa0187250:three_prime_UTR
AATTGTAGGTCTTTGAGTTT+TGG 0.259902 2_1:+1925967 None:intergenic
TGTTGACACTTTCAGGCTTC+AGG 0.310211 2_1:-1926124 Msa0187250:CDS
GTTGCTGACATCTAAATTAG+AGG 0.319278 2_1:-1926046 Msa0187250:CDS
CGCAACCATGCTTGTTTACC+AGG 0.349778 2_1:-1927160 Msa0187250:exon
CTACTTTGCTTATGGCTTGA+AGG 0.363173 2_1:-1925754 Msa0187250:CDS
TCCGTTCTCAATTTCCTTGT+AGG 0.371448 2_1:+1926400 None:intergenic
GATGAAATACATACAATTGT+AGG 0.374980 2_1:+1925953 None:intergenic
AACAATATCAACCACTTTGA+CGG 0.381711 2_1:+1926143 None:intergenic
GTTTACCAGGATCTTCTTAC+GGG 0.390880 2_1:-1927147 Msa0187250:intron
TGTTTACCAGGATCTTCTTA+CGG 0.395300 2_1:-1927148 Msa0187250:CDS
AATTGAGAACGGAATGCTTT+GGG 0.399647 2_1:-1926390 Msa0187250:CDS
CCGTTCTCAATTTCCTTGTA+GGG 0.410758 2_1:+1926401 None:intergenic
GAACGGAATGCTTTGGGAAG+TGG 0.428530 2_1:-1926384 Msa0187250:CDS
AATTGCTTCTTATCAAAAGC+TGG 0.428621 2_1:+1926096 None:intergenic
GACTAAAATCATAACTTCAT+AGG 0.445800 2_1:+1925569 None:intergenic
TATTAACATGATGATTAACT+TGG 0.446484 2_1:+1925526 None:intergenic
AAATTGAGAACGGAATGCTT+TGG 0.446609 2_1:-1926391 Msa0187250:CDS
TAAGCAAAGTAGAGAAAAGT+TGG 0.453692 2_1:+1925765 None:intergenic
CCTTGTGTTTGCTTACTACA+AGG 0.455642 2_1:-1925802 Msa0187250:CDS
CTCTGACTCATTCCCCTACA+AGG 0.486361 2_1:-1926414 Msa0187250:CDS
AGGAAGAGAGAAGCAAAAGA+AGG 0.519336 2_1:+1927236 None:intergenic
GCTTTGGGAAGTGGAAGGAA+AGG 0.531642 2_1:-1926375 Msa0187250:intron
TCATCTCCGCCCTCAGCAGA+AGG 0.531916 2_1:+1926189 None:intergenic
TGGTGCTAATCCTTCTGCTG+AGG 0.536435 2_1:-1926199 Msa0187250:CDS
CGTTCTCAATTTCCTTGTAG+GGG 0.538126 2_1:+1926402 None:intergenic
GTGTTTGCTTACTACAAGGA+TGG 0.538874 2_1:-1925798 Msa0187250:CDS
TTCTGCTGAGGGCGGAGATG+AGG 0.539950 2_1:-1926187 Msa0187250:CDS
GGTGCTAATCCTTCTGCTGA+GGG 0.547301 2_1:-1926198 Msa0187250:CDS
GTTTACCCGTAAGAAGATCC+TGG 0.555785 2_1:+1927142 None:intergenic
GGGGAGAGCATGCATGATGA+TGG 0.565967 2_1:-1925828 Msa0187250:CDS
CTGGTAAACAAGCATGGTTG+CGG 0.598178 2_1:+1927161 None:intergenic
AAGATCCTGGTAAACAAGCA+TGG 0.602746 2_1:+1927155 None:intergenic
CCCTACAAGGAAATTGAGAA+CGG 0.603248 2_1:-1926401 Msa0187250:CDS
GTAGAGAAAAGTTGGATCAG+TGG 0.605758 2_1:+1925773 None:intergenic
GCTAATCCTTCTGCTGAGGG+CGG 0.631354 2_1:-1926195 Msa0187250:CDS
CCTTGTAGTAAGCAAACACA+AGG 0.635355 2_1:+1925802 None:intergenic
GTGGGTTGTTCAAGGAGCAG+TGG 0.636439 2_1:-1926232 Msa0187250:CDS
GGAGCAGTGGATGTGAACAT+TGG 0.696184 2_1:-1926219 Msa0187250:CDS
GGAATGCTTTGGGAAGTGGA+AGG 0.706482 2_1:-1926380 Msa0187250:CDS
TGATGATCAAGCCGTCAAAG+TGG 0.714042 2_1:-1926154 Msa0187250:CDS
GAGGGCGGAGATGAGGACGA+CGG 0.740386 2_1:-1926180 Msa0187250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAACCAAATATT+AGG - chr2_1:1925782-1925801 Msa0187250:CDS 10.0%
!!! TTTAATTTAATAGAATTTGT+TGG - chr2_1:1926117-1926136 Msa0187250:CDS 10.0%
!!! GATTACATTTTATTTTTATA+TGG - chr2_1:1927200-1927219 Msa0187250:intron 10.0%
!!! TTTTTTTTTAACCAAATATT+AGG - chr2_1:1925782-1925801 Msa0187250:CDS 10.0%
!!! TTTAATTTAATAGAATTTGT+TGG - chr2_1:1926117-1926136 Msa0187250:CDS 10.0%
!!! GATTACATTTTATTTTTATA+TGG - chr2_1:1927200-1927219 Msa0187250:intron 10.0%
!!! ATTATTTTTCATCTCTTTTT+TGG - chr2_1:1926872-1926891 Msa0187250:intron 15.0%
!! TTTAAATTGATGTTCTTAAT+TGG - chr2_1:1927111-1927130 Msa0187250:intron 15.0%
!!! TGAATTTTTAAGTTCTAATT+AGG - chr2_1:1927164-1927183 Msa0187250:exon 15.0%
!!! ATTATTTTTCATCTCTTTTT+TGG - chr2_1:1926872-1926891 Msa0187250:intron 15.0%
!! TTTAAATTGATGTTCTTAAT+TGG - chr2_1:1927111-1927130 Msa0187250:intron 15.0%
!!! TGAATTTTTAAGTTCTAATT+AGG - chr2_1:1927164-1927183 Msa0187250:exon 15.0%
!! AAAGTAAAAGAAACCTAATT+GGG + chr2_1:1925721-1925740 None:intergenic 20.0%
!! AAAAGTAAAAGAAACCTAAT+TGG + chr2_1:1925722-1925741 None:intergenic 20.0%
!!! TTTTTTCCATTGTTTTTCAT+AGG - chr2_1:1925738-1925757 Msa0187250:exon 20.0%
!! TTAACATTCATCCTAATATT+TGG + chr2_1:1925796-1925815 None:intergenic 20.0%
!!! TTTTTCATAAACTTCACTTT+TGG - chr2_1:1925855-1925874 Msa0187250:intron 20.0%
!!! TTATATACTAACCTTTTGTA+AGG - chr2_1:1925901-1925920 Msa0187250:intron 20.0%
!! AATATTAACAACCTTACAAA+AGG + chr2_1:1925915-1925934 None:intergenic 20.0%
!! AAAAAAAATAGATCAACCTT+GGG + chr2_1:1925966-1925985 None:intergenic 20.0%
!! TAAAAAAAATAGATCAACCT+TGG + chr2_1:1925967-1925986 None:intergenic 20.0%
!! GATAATAATGAAAAACCTAA+AGG + chr2_1:1926091-1926110 None:intergenic 20.0%
!! AATATTAATTTAGCACTTTG+TGG + chr2_1:1926195-1926214 None:intergenic 20.0%
!!! ATTAAGTTTTCTCTTTTTTG+TGG - chr2_1:1926899-1926918 Msa0187250:intron 20.0%
!!! ATTTTTAAGTTCTAATTAGG+AGG - chr2_1:1927167-1927186 Msa0187250:exon 20.0%
!! AAAGTAAAAGAAACCTAATT+GGG + chr2_1:1925721-1925740 None:intergenic 20.0%
!! AAAAGTAAAAGAAACCTAAT+TGG + chr2_1:1925722-1925741 None:intergenic 20.0%
!!! TTTTTTCCATTGTTTTTCAT+AGG - chr2_1:1925738-1925757 Msa0187250:exon 20.0%
!! TTAACATTCATCCTAATATT+TGG + chr2_1:1925796-1925815 None:intergenic 20.0%
!!! TTTTTCATAAACTTCACTTT+TGG - chr2_1:1925855-1925874 Msa0187250:intron 20.0%
!!! TTATATACTAACCTTTTGTA+AGG - chr2_1:1925901-1925920 Msa0187250:intron 20.0%
!! AATATTAACAACCTTACAAA+AGG + chr2_1:1925915-1925934 None:intergenic 20.0%
!! AAAAAAAATAGATCAACCTT+GGG + chr2_1:1925966-1925985 None:intergenic 20.0%
!! TAAAAAAAATAGATCAACCT+TGG + chr2_1:1925967-1925986 None:intergenic 20.0%
!! GATAATAATGAAAAACCTAA+AGG + chr2_1:1926091-1926110 None:intergenic 20.0%
!! AATATTAATTTAGCACTTTG+TGG + chr2_1:1926195-1926214 None:intergenic 20.0%
!!! ATTAAGTTTTCTCTTTTTTG+TGG - chr2_1:1926899-1926918 Msa0187250:intron 20.0%
!!! ATTTTTAAGTTCTAATTAGG+AGG - chr2_1:1927167-1927186 Msa0187250:exon 20.0%
! CAAAAAAACTCAAAGATGAA+AGG + chr2_1:1925685-1925704 None:intergenic 25.0%
! CAAAATCCTATGAAAAACAA+TGG + chr2_1:1925747-1925766 None:intergenic 25.0%
! AAAAAAATAGATCAACCTTG+GGG + chr2_1:1925965-1925984 None:intergenic 25.0%
!!! CTTAAACTTCTGTGTTTTTT+GGG - chr2_1:1925992-1926011 Msa0187250:CDS 25.0%
! ACTATTATAGATCAAACTTG+TGG - chr2_1:1926026-1926045 Msa0187250:CDS 25.0%
! GTTAAGCTAATCATGTTTAA+GGG + chr2_1:1926223-1926242 None:intergenic 25.0%
! CTTAACCTAATACTTGATTA+AGG - chr2_1:1926237-1926256 Msa0187250:intron 25.0%
! AGAATCCTTAATCAAGTATT+AGG + chr2_1:1926245-1926264 None:intergenic 25.0%
!!! TTATTGTTTTTCATTGCTGA+TGG - chr2_1:1926302-1926321 Msa0187250:intron 25.0%
! GATGAAATACATACAATTGT+AGG + chr2_1:1926852-1926871 None:intergenic 25.0%
! GACTAAAATCATAACTTCAT+AGG + chr2_1:1927236-1927255 None:intergenic 25.0%
! CAAAAAAACTCAAAGATGAA+AGG + chr2_1:1925685-1925704 None:intergenic 25.0%
! CAAAATCCTATGAAAAACAA+TGG + chr2_1:1925747-1925766 None:intergenic 25.0%
! AAAAAAATAGATCAACCTTG+GGG + chr2_1:1925965-1925984 None:intergenic 25.0%
!!! CTTAAACTTCTGTGTTTTTT+GGG - chr2_1:1925992-1926011 Msa0187250:CDS 25.0%
! ACTATTATAGATCAAACTTG+TGG - chr2_1:1926026-1926045 Msa0187250:CDS 25.0%
! GTTAAGCTAATCATGTTTAA+GGG + chr2_1:1926223-1926242 None:intergenic 25.0%
! CTTAACCTAATACTTGATTA+AGG - chr2_1:1926237-1926256 Msa0187250:intron 25.0%
! AGAATCCTTAATCAAGTATT+AGG + chr2_1:1926245-1926264 None:intergenic 25.0%
!!! TTATTGTTTTTCATTGCTGA+TGG - chr2_1:1926302-1926321 Msa0187250:intron 25.0%
! GATGAAATACATACAATTGT+AGG + chr2_1:1926852-1926871 None:intergenic 25.0%
! GACTAAAATCATAACTTCAT+AGG + chr2_1:1927236-1927255 None:intergenic 25.0%
GAAGATTATATTGCGATAGA+AGG + chr2_1:1925589-1925608 None:intergenic 30.0%
! TTTTACTTTACCACCCAATT+AGG - chr2_1:1925705-1925724 Msa0187250:three_prime_UTR 30.0%
CCAAAAAACACAGAAGTTTA+AGG + chr2_1:1925994-1926013 None:intergenic 30.0%
!!! CCTTAAACTTCTGTGTTTTT+TGG - chr2_1:1925991-1926010 Msa0187250:CDS 30.0%
GATCTATAATAGTGTGTGTT+TGG + chr2_1:1926019-1926038 None:intergenic 30.0%
GGTTAAGCTAATCATGTTTA+AGG + chr2_1:1926224-1926243 None:intergenic 30.0%
! CTTTGTTGATGAATTTGTCT+AGG - chr2_1:1926353-1926372 Msa0187250:intron 30.0%
CTGACATAAAAACTAAAGCA+TGG + chr2_1:1926495-1926514 None:intergenic 30.0%
CACATTACACAGTATACTTT+AGG + chr2_1:1926540-1926559 None:intergenic 30.0%
!!! TGTAATGTGATTTTTTGCAG+TGG - chr2_1:1926551-1926570 Msa0187250:intron 30.0%
!!! GTAATGTGATTTTTTGCAGT+GGG - chr2_1:1926552-1926571 Msa0187250:intron 30.0%
AACAATATCAACCACTTTGA+CGG + chr2_1:1926662-1926681 None:intergenic 30.0%
TTGATATTGTTGACACTTTC+AGG - chr2_1:1926671-1926690 Msa0187250:intron 30.0%
AATTGCTTCTTATCAAAAGC+TGG + chr2_1:1926709-1926728 None:intergenic 30.0%
!! ATTGTAGGTCTTTGAGTTTT+GGG + chr2_1:1926837-1926856 None:intergenic 30.0%
!! AATTGTAGGTCTTTGAGTTT+TGG + chr2_1:1926838-1926857 None:intergenic 30.0%
!!! ATCAATGTTGCAGTTTTGTT+GGG - chr2_1:1926954-1926973 Msa0187250:intron 30.0%
TAAGCAAAGTAGAGAAAAGT+TGG + chr2_1:1927040-1927059 None:intergenic 30.0%
! ACTTTTCTCTACTTTGCTTA+TGG - chr2_1:1927040-1927059 Msa0187250:intron 30.0%
GAAGATTATATTGCGATAGA+AGG + chr2_1:1925589-1925608 None:intergenic 30.0%
! TTTTACTTTACCACCCAATT+AGG - chr2_1:1925705-1925724 Msa0187250:three_prime_UTR 30.0%
CCAAAAAACACAGAAGTTTA+AGG + chr2_1:1925994-1926013 None:intergenic 30.0%
!!! CCTTAAACTTCTGTGTTTTT+TGG - chr2_1:1925991-1926010 Msa0187250:CDS 30.0%
GATCTATAATAGTGTGTGTT+TGG + chr2_1:1926019-1926038 None:intergenic 30.0%
GGTTAAGCTAATCATGTTTA+AGG + chr2_1:1926224-1926243 None:intergenic 30.0%
! CTTTGTTGATGAATTTGTCT+AGG - chr2_1:1926353-1926372 Msa0187250:intron 30.0%
CTGACATAAAAACTAAAGCA+TGG + chr2_1:1926495-1926514 None:intergenic 30.0%
CACATTACACAGTATACTTT+AGG + chr2_1:1926540-1926559 None:intergenic 30.0%
!!! TGTAATGTGATTTTTTGCAG+TGG - chr2_1:1926551-1926570 Msa0187250:intron 30.0%
!!! GTAATGTGATTTTTTGCAGT+GGG - chr2_1:1926552-1926571 Msa0187250:intron 30.0%
AACAATATCAACCACTTTGA+CGG + chr2_1:1926662-1926681 None:intergenic 30.0%
TTGATATTGTTGACACTTTC+AGG - chr2_1:1926671-1926690 Msa0187250:intron 30.0%
AATTGCTTCTTATCAAAAGC+TGG + chr2_1:1926709-1926728 None:intergenic 30.0%
!! ATTGTAGGTCTTTGAGTTTT+GGG + chr2_1:1926837-1926856 None:intergenic 30.0%
!! AATTGTAGGTCTTTGAGTTT+TGG + chr2_1:1926838-1926857 None:intergenic 30.0%
!!! ATCAATGTTGCAGTTTTGTT+GGG - chr2_1:1926954-1926973 Msa0187250:intron 30.0%
TAAGCAAAGTAGAGAAAAGT+TGG + chr2_1:1927040-1927059 None:intergenic 30.0%
! ACTTTTCTCTACTTTGCTTA+TGG - chr2_1:1927040-1927059 Msa0187250:intron 30.0%
TGTTTACCAGGATCTTCTTA+CGG - chr2_1:1925654-1925673 Msa0187250:three_prime_UTR 35.0%
GTAAAAGAAACCTAATTGGG+TGG + chr2_1:1925718-1925737 None:intergenic 35.0%
! AGTTTTCTGTTTGTGTTCTG+TGG - chr2_1:1926060-1926079 Msa0187250:CDS 35.0%
TGTTCTGTGGTTTAACCTTT+AGG - chr2_1:1926073-1926092 Msa0187250:CDS 35.0%
!!! AGTTGTTTTGTTTGTGACAG+AGG - chr2_1:1926151-1926170 Msa0187250:CDS 35.0%
!!! GTTGTTTTGTTTGTGACAGA+GGG - chr2_1:1926152-1926171 Msa0187250:CDS 35.0%
AAATTGAGAACGGAATGCTT+TGG - chr2_1:1926411-1926430 Msa0187250:CDS 35.0%
AATTGAGAACGGAATGCTTT+GGG - chr2_1:1926412-1926431 Msa0187250:CDS 35.0%
GTTGCTGACATCTAAATTAG+AGG - chr2_1:1926756-1926775 Msa0187250:intron 35.0%
!! CATCAATGTTGCAGTTTTGT+TGG - chr2_1:1926953-1926972 Msa0187250:intron 35.0%
!!! TCAATGTTGCAGTTTTGTTG+GGG - chr2_1:1926955-1926974 Msa0187250:intron 35.0%
TGTTTACCAGGATCTTCTTA+CGG - chr2_1:1925654-1925673 Msa0187250:three_prime_UTR 35.0%
GTAAAAGAAACCTAATTGGG+TGG + chr2_1:1925718-1925737 None:intergenic 35.0%
! AGTTTTCTGTTTGTGTTCTG+TGG - chr2_1:1926060-1926079 Msa0187250:CDS 35.0%
TGTTCTGTGGTTTAACCTTT+AGG - chr2_1:1926073-1926092 Msa0187250:CDS 35.0%
!!! AGTTGTTTTGTTTGTGACAG+AGG - chr2_1:1926151-1926170 Msa0187250:CDS 35.0%
!!! GTTGTTTTGTTTGTGACAGA+GGG - chr2_1:1926152-1926171 Msa0187250:CDS 35.0%
AAATTGAGAACGGAATGCTT+TGG - chr2_1:1926411-1926430 Msa0187250:CDS 35.0%
AATTGAGAACGGAATGCTTT+GGG - chr2_1:1926412-1926431 Msa0187250:CDS 35.0%
GTTGCTGACATCTAAATTAG+AGG - chr2_1:1926756-1926775 Msa0187250:intron 35.0%
!! CATCAATGTTGCAGTTTTGT+TGG - chr2_1:1926953-1926972 Msa0187250:intron 35.0%
!!! TCAATGTTGCAGTTTTGTTG+GGG - chr2_1:1926955-1926974 Msa0187250:intron 35.0%
AGGAAGAGAGAAGCAAAAGA+AGG + chr2_1:1925569-1925588 None:intergenic 40.0%
AAGATCCTGGTAAACAAGCA+TGG + chr2_1:1925650-1925669 None:intergenic 40.0%
GTTTACCAGGATCTTCTTAC+GGG - chr2_1:1925655-1925674 Msa0187250:three_prime_UTR 40.0%
!! GAGTTTTCTTTTTTGCCCCA+AGG - chr2_1:1925947-1925966 Msa0187250:intron 40.0%
CGTTCTCAATTTCCTTGTAG+GGG + chr2_1:1926403-1926422 None:intergenic 40.0%
CCGTTCTCAATTTCCTTGTA+GGG + chr2_1:1926404-1926423 None:intergenic 40.0%
CCCTACAAGGAAATTGAGAA+CGG - chr2_1:1926401-1926420 Msa0187250:CDS 40.0%
TCCGTTCTCAATTTCCTTGT+AGG + chr2_1:1926405-1926424 None:intergenic 40.0%
!!! TTTTTGCAGTGGGTTGTTCA+AGG - chr2_1:1926562-1926581 Msa0187250:intron 40.0%
CCTTGTAGTAAGCAAACACA+AGG + chr2_1:1927003-1927022 None:intergenic 40.0%
CCTTGTGTTTGCTTACTACA+AGG - chr2_1:1927000-1927019 Msa0187250:intron 40.0%
GTGTTTGCTTACTACAAGGA+TGG - chr2_1:1927004-1927023 Msa0187250:intron 40.0%
GTAGAGAAAAGTTGGATCAG+TGG + chr2_1:1927032-1927051 None:intergenic 40.0%
CTACTTTGCTTATGGCTTGA+AGG - chr2_1:1927048-1927067 Msa0187250:intron 40.0%
AGGAAGAGAGAAGCAAAAGA+AGG + chr2_1:1925569-1925588 None:intergenic 40.0%
AAGATCCTGGTAAACAAGCA+TGG + chr2_1:1925650-1925669 None:intergenic 40.0%
GTTTACCAGGATCTTCTTAC+GGG - chr2_1:1925655-1925674 Msa0187250:three_prime_UTR 40.0%
!! GAGTTTTCTTTTTTGCCCCA+AGG - chr2_1:1925947-1925966 Msa0187250:intron 40.0%
CGTTCTCAATTTCCTTGTAG+GGG + chr2_1:1926403-1926422 None:intergenic 40.0%
CCGTTCTCAATTTCCTTGTA+GGG + chr2_1:1926404-1926423 None:intergenic 40.0%
CCCTACAAGGAAATTGAGAA+CGG - chr2_1:1926401-1926420 Msa0187250:CDS 40.0%
TCCGTTCTCAATTTCCTTGT+AGG + chr2_1:1926405-1926424 None:intergenic 40.0%
!!! TTTTTGCAGTGGGTTGTTCA+AGG - chr2_1:1926562-1926581 Msa0187250:intron 40.0%
CCTTGTAGTAAGCAAACACA+AGG + chr2_1:1927003-1927022 None:intergenic 40.0%
CCTTGTGTTTGCTTACTACA+AGG - chr2_1:1927000-1927019 Msa0187250:intron 40.0%
GTGTTTGCTTACTACAAGGA+TGG - chr2_1:1927004-1927023 Msa0187250:intron 40.0%
GTAGAGAAAAGTTGGATCAG+TGG + chr2_1:1927032-1927051 None:intergenic 40.0%
CTACTTTGCTTATGGCTTGA+AGG - chr2_1:1927048-1927067 Msa0187250:intron 40.0%
CTGGTAAACAAGCATGGTTG+CGG + chr2_1:1925644-1925663 None:intergenic 45.0%
GTTTACCCGTAAGAAGATCC+TGG + chr2_1:1925663-1925682 None:intergenic 45.0%
TGATGATCAAGCCGTCAAAG+TGG - chr2_1:1926648-1926667 Msa0187250:intron 45.0%
TGTTGACACTTTCAGGCTTC+AGG - chr2_1:1926678-1926697 Msa0187250:intron 45.0%
!!! GTAGGTCTTTGAGTTTTGGG+AGG + chr2_1:1926834-1926853 None:intergenic 45.0%
CTGGTAAACAAGCATGGTTG+CGG + chr2_1:1925644-1925663 None:intergenic 45.0%
GTTTACCCGTAAGAAGATCC+TGG + chr2_1:1925663-1925682 None:intergenic 45.0%
TGATGATCAAGCCGTCAAAG+TGG - chr2_1:1926648-1926667 Msa0187250:intron 45.0%
TGTTGACACTTTCAGGCTTC+AGG - chr2_1:1926678-1926697 Msa0187250:intron 45.0%
!!! GTAGGTCTTTGAGTTTTGGG+AGG + chr2_1:1926834-1926853 None:intergenic 45.0%
!!! ATTCTATTAAATTAAAATTT+TGG + chr2_1:1926113-1926132 None:intergenic 5.0%
!!! ATTCTATTAAATTAAAATTT+TGG + chr2_1:1926113-1926132 None:intergenic 5.0%
CGCAACCATGCTTGTTTACC+AGG - chr2_1:1925642-1925661 Msa0187250:three_prime_UTR 50.0%
CTCTGACTCATTCCCCTACA+AGG - chr2_1:1926388-1926407 Msa0187250:CDS 50.0%
!! GAACGGAATGCTTTGGGAAG+TGG - chr2_1:1926418-1926437 Msa0187250:CDS 50.0%
!! GGAATGCTTTGGGAAGTGGA+AGG - chr2_1:1926422-1926441 Msa0187250:CDS 50.0%
!! GCTTTGGGAAGTGGAAGGAA+AGG - chr2_1:1926427-1926446 Msa0187250:CDS 50.0%
GGGAAGTGGAAGGAAAGGTT+TGG - chr2_1:1926432-1926451 Msa0187250:intron 50.0%
GGAGCAGTGGATGTGAACAT+TGG - chr2_1:1926583-1926602 Msa0187250:intron 50.0%
! TGGTGCTAATCCTTCTGCTG+AGG - chr2_1:1926603-1926622 Msa0187250:intron 50.0%
GGTGCTAATCCTTCTGCTGA+GGG - chr2_1:1926604-1926623 Msa0187250:intron 50.0%
CGCAACCATGCTTGTTTACC+AGG - chr2_1:1925642-1925661 Msa0187250:three_prime_UTR 50.0%
CTCTGACTCATTCCCCTACA+AGG - chr2_1:1926388-1926407 Msa0187250:CDS 50.0%
!! GAACGGAATGCTTTGGGAAG+TGG - chr2_1:1926418-1926437 Msa0187250:CDS 50.0%
!! GGAATGCTTTGGGAAGTGGA+AGG - chr2_1:1926422-1926441 Msa0187250:CDS 50.0%
!! GCTTTGGGAAGTGGAAGGAA+AGG - chr2_1:1926427-1926446 Msa0187250:CDS 50.0%
GGGAAGTGGAAGGAAAGGTT+TGG - chr2_1:1926432-1926451 Msa0187250:intron 50.0%
GGAGCAGTGGATGTGAACAT+TGG - chr2_1:1926583-1926602 Msa0187250:intron 50.0%
! TGGTGCTAATCCTTCTGCTG+AGG - chr2_1:1926603-1926622 Msa0187250:intron 50.0%
GGTGCTAATCCTTCTGCTGA+GGG - chr2_1:1926604-1926623 Msa0187250:intron 50.0%
! GTGGGTTGTTCAAGGAGCAG+TGG - chr2_1:1926570-1926589 Msa0187250:intron 55.0%
GCTAATCCTTCTGCTGAGGG+CGG - chr2_1:1926607-1926626 Msa0187250:intron 55.0%
! GGGGAGAGCATGCATGATGA+TGG - chr2_1:1926974-1926993 Msa0187250:intron 55.0%
! GTGGGTTGTTCAAGGAGCAG+TGG - chr2_1:1926570-1926589 Msa0187250:intron 55.0%
GCTAATCCTTCTGCTGAGGG+CGG - chr2_1:1926607-1926626 Msa0187250:intron 55.0%
! GGGGAGAGCATGCATGATGA+TGG - chr2_1:1926974-1926993 Msa0187250:intron 55.0%
TCATCTCCGCCCTCAGCAGA+AGG + chr2_1:1926616-1926635 None:intergenic 60.0%
TTCTGCTGAGGGCGGAGATG+AGG - chr2_1:1926615-1926634 Msa0187250:intron 60.0%
TCATCTCCGCCCTCAGCAGA+AGG + chr2_1:1926616-1926635 None:intergenic 60.0%
TTCTGCTGAGGGCGGAGATG+AGG - chr2_1:1926615-1926634 Msa0187250:intron 60.0%
GAGGGCGGAGATGAGGACGA+CGG - chr2_1:1926622-1926641 Msa0187250:intron 65.0%
GAGGGCGGAGATGAGGACGA+CGG - chr2_1:1926622-1926641 Msa0187250:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 1925541 1927283 1925541 ID=Msa0187250;Name=Msa0187250
chr2_1 mRNA 1925541 1927283 1925541 ID=Msa0187250-mRNA-1;Parent=Msa0187250;Name=Msa0187250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=72|1|1|1|0.75|0.6|5|199|168
chr2_1 exon 1925541 1925857 1925541 ID=Msa0187250-mRNA-1:exon:912;Parent=Msa0187250-mRNA-1
chr2_1 exon 1925967 1926253 1925967 ID=Msa0187250-mRNA-1:exon:911;Parent=Msa0187250-mRNA-1
chr2_1 exon 1926376 1926449 1926376 ID=Msa0187250-mRNA-1:exon:910;Parent=Msa0187250-mRNA-1
chr2_1 exon 1927148 1927198 1927148 ID=Msa0187250-mRNA-1:exon:909;Parent=Msa0187250-mRNA-1
chr2_1 exon 1927235 1927283 1927235 ID=Msa0187250-mRNA-1:exon:908;Parent=Msa0187250-mRNA-1
chr2_1 five_prime_UTR 1927235 1927283 1927235 ID=Msa0187250-mRNA-1:five_prime_utr;Parent=Msa0187250-mRNA-1
chr2_1 five_prime_UTR 1927176 1927198 1927176 ID=Msa0187250-mRNA-1:five_prime_utr;Parent=Msa0187250-mRNA-1
chr2_1 CDS 1927148 1927175 1927148 ID=Msa0187250-mRNA-1:cds;Parent=Msa0187250-mRNA-1
chr2_1 CDS 1926376 1926449 1926376 ID=Msa0187250-mRNA-1:cds;Parent=Msa0187250-mRNA-1
chr2_1 CDS 1925967 1926253 1925967 ID=Msa0187250-mRNA-1:cds;Parent=Msa0187250-mRNA-1
chr2_1 CDS 1925740 1925857 1925740 ID=Msa0187250-mRNA-1:cds;Parent=Msa0187250-mRNA-1
chr2_1 three_prime_UTR 1925541 1925739 1925541 ID=Msa0187250-mRNA-1:three_prime_utr;Parent=Msa0187250-mRNA-1
Gene Sequence

>Msa0187250

ATGCTTGTTTACCAGGATCTTCTTACGGGTGATGAGCTTCTCTCTGACTCATTCCCCTACAAGGAAATTGAGAACGGAATGCTTTGGGAAGTGGAAGGAAAGTGGGTTGTTCAAGGAGCAGTGGATGTGAACATTGGTGCTAATCCTTCTGCTGAGGGCGGAGATGAGGACGACGGTGTTGATGATCAAGCCGTCAAAGTGGTTGATATTGTTGACACTTTCAGGCTTCAGGAGCAACCAGCTTTTGATAAGAAGCAATTTGTTACTTATATGAAAAGATATATTAAGTTGCTGACATCTAAATTAGAGGCAGAGAAGCAAGAGTTGTTCAAGAAGCACATTGAAGCAGCAACTAAGTTTCTCCTCCCAAAACTCAAAGACCTACAATTTTTTGTTGGGGAGAGCATGCATGATGATGGAAGCCTTGTGTTTGCTTACTACAAGGATGGTGCCACTGATCCAACTTTTCTCTACTTTGCTTATGGCTTGAAGGAAATCAAGTGTTAA

Protein sequence

>Msa0187250

MLVYQDLLTGDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVNIGANPSAEGGDEDDGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRYIKLLTSKLEAEKQELFKKHIEAATKFLLPKLKDLQFFVGESMHDDGSLVFAYYKDGATDPTFLYFAYGLKEIKC*