Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344080 | PNX72202.1 | 74.118 | 340 | 79 | 2 | 42 | 380 | 1 | 332 | 1.78e-176 | 504 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344080 | sp|Q9FFJ8|LIMYB_ARATH | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.61e-14 | 78.2 |
Msa0344080 | sp|Q9FFJ8|LIMYB_ARATH | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 4.95e-14 | 76.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344080 | A0A2K3NGN7 | 74.118 | 340 | 79 | 2 | 42 | 380 | 1 | 332 | 8.52e-177 | 504 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017510 | Msa0344080 | 0.801078 | 1.066852e-48 | -8.615850e-47 |
Msa0157290 | Msa0344080 | 0.800787 | 1.223323e-48 | -8.615850e-47 |
Msa0171290 | Msa0344080 | 0.802919 | 4.463965e-49 | -8.615850e-47 |
Msa0204980 | Msa0344080 | 0.841124 | 5.747772e-58 | -8.615850e-47 |
Msa0320550 | Msa0344080 | 0.987073 | 5.824828e-169 | -8.615850e-47 |
Msa0339250 | Msa0344080 | 0.805888 | 1.073988e-49 | -8.615850e-47 |
Msa0344080 | Msa0880140 | 0.800537 | 1.375966e-48 | -8.615850e-47 |
Msa0344080 | Msa1168160 | 0.809189 | 2.139377e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344080 | MtrunA17_Chr2g0295811 | 92.825 | 223 | 16 | 0 | 158 | 380 | 9 | 231 | 9.11e-152 | 427 |
Msa0344080 | MtrunA17_Chr1g0172741 | 44.444 | 324 | 160 | 6 | 58 | 380 | 19 | 323 | 2.33e-89 | 272 |
Msa0344080 | MtrunA17_Chr2g0285481 | 44.444 | 324 | 160 | 6 | 58 | 380 | 19 | 323 | 1.03e-88 | 270 |
Msa0344080 | MtrunA17_Chr8g0334551 | 45.092 | 326 | 160 | 7 | 60 | 381 | 20 | 330 | 3.11e-85 | 262 |
Msa0344080 | MtrunA17_Chr2g0321391 | 44.275 | 262 | 127 | 5 | 119 | 380 | 3 | 245 | 6.38e-67 | 212 |
Msa0344080 | MtrunA17_Chr5g0422701 | 42.922 | 219 | 106 | 5 | 162 | 380 | 14 | 213 | 7.27e-48 | 162 |
Msa0344080 | MtrunA17_Chr8g0362511 | 24.684 | 316 | 209 | 6 | 62 | 370 | 68 | 361 | 1.19e-25 | 106 |
Msa0344080 | MtrunA17_Chr2g0295611 | 53.535 | 99 | 38 | 2 | 140 | 235 | 1 | 94 | 2.56e-25 | 98.6 |
Msa0344080 | MtrunA17_Chr5g0402821 | 25.472 | 318 | 215 | 7 | 62 | 370 | 16 | 320 | 1.40e-22 | 97.1 |
Msa0344080 | MtrunA17_Chr5g0422691 | 44.706 | 85 | 46 | 1 | 58 | 141 | 19 | 103 | 2.91e-20 | 85.1 |
Msa0344080 | MtrunA17_Chr3g0113081 | 33.094 | 139 | 92 | 1 | 61 | 199 | 184 | 321 | 1.57e-17 | 84.3 |
Msa0344080 | MtrunA17_Chr3g0113081 | 34.884 | 129 | 83 | 1 | 62 | 190 | 383 | 510 | 1.04e-15 | 79.0 |
Msa0344080 | MtrunA17_Chr3g0113081 | 33.333 | 123 | 81 | 1 | 62 | 184 | 8 | 129 | 1.85e-13 | 72.0 |
Msa0344080 | MtrunA17_Chr6g0469501 | 50.820 | 61 | 28 | 1 | 320 | 380 | 1 | 59 | 1.34e-16 | 73.6 |
Msa0344080 | MtrunA17_Chr5g0405761 | 26.901 | 171 | 122 | 2 | 18 | 186 | 4 | 173 | 5.02e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344080 | AT5G05800.1 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
Msa0344080 | AT5G05800.1 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
Msa0344080 | AT5G05800.5 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
Msa0344080 | AT5G05800.5 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
Msa0344080 | AT5G05800.3 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
Msa0344080 | AT5G05800.3 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
Msa0344080 | AT5G05800.2 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
Msa0344080 | AT5G05800.2 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
Msa0344080 | AT5G05800.4 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
Msa0344080 | AT5G05800.4 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
Msa0344080 | AT3G11290.2 | 29.545 | 132 | 92 | 1 | 62 | 193 | 165 | 295 | 6.60e-13 | 70.1 |
Msa0344080 | AT3G11290.1 | 29.545 | 132 | 92 | 1 | 62 | 193 | 165 | 295 | 6.60e-13 | 70.1 |
Msa0344080 | AT3G11310.1 | 31.250 | 144 | 91 | 3 | 60 | 197 | 171 | 312 | 3.78e-11 | 65.1 |
Find 106 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGCATTGGTACCCTCTTC+TGG | 0.207423 | 3_1:+2665475 | Msa0344080:CDS |
GATCAATCTACTTTCATAAA+TGG | 0.225444 | 3_1:-2666027 | None:intergenic |
CGTTCCCTCAGAATCACTTT+TGG | 0.268153 | 3_1:+2663782 | Msa0344080:five_prime_UTR |
AGGAAAGACATTGGAGATAA+AGG | 0.272766 | 3_1:+2664941 | Msa0344080:CDS |
TCCAACTTTAATGAGAAAAC+TGG | 0.275778 | 3_1:+2665094 | Msa0344080:CDS |
ATACGGGGATACCGATTTAT+TGG | 0.288403 | 3_1:+2665579 | Msa0344080:CDS |
ATGCCTTGATGAAGTCAAAA+AGG | 0.298025 | 3_1:+2665021 | Msa0344080:CDS |
CAAACAAGTGGTATAATCTT+AGG | 0.300026 | 3_1:+2665143 | Msa0344080:CDS |
ATTGAATTGGTTAAACCATT+AGG | 0.306101 | 3_1:+2666186 | Msa0344080:three_prime_UTR |
TTGACATCCCATTCAGCCTT+TGG | 0.309578 | 3_1:-2664974 | None:intergenic |
ATGAGCAAAGCTTGTTGAAT+TGG | 0.320958 | 3_1:+2665977 | Msa0344080:CDS |
GTAGTTAATTCAATGTAAAA+TGG | 0.325846 | 3_1:-2665421 | None:intergenic |
AACTACTCTGTTCAAGGATA+TGG | 0.339439 | 3_1:+2665438 | Msa0344080:CDS |
AGAGAGAGAAAGAAGAGGTT+AGG | 0.340973 | 3_1:-2663872 | None:intergenic |
TTAGTTTCTTTCTTATGTAT+TGG | 0.344398 | 3_1:+2666108 | Msa0344080:three_prime_UTR |
ATTTCCAGCCTTTCTTTGTA+AGG | 0.360922 | 3_1:-2665063 | None:intergenic |
TTTGACAATGTTGATTGAAT+TGG | 0.365985 | 3_1:+2666173 | Msa0344080:three_prime_UTR |
GAGAGTGGTGGTATAGATAT+CGG | 0.367630 | 3_1:+2665550 | Msa0344080:CDS |
TTATTGGGAGGTGCTATTGC+TGG | 0.381064 | 3_1:+2665595 | Msa0344080:CDS |
CTTAATTGCATGGAGGTCAT+TGG | 0.389948 | 3_1:+2665865 | Msa0344080:CDS |
GAGAGAGAAAGAAGAGGTTA+GGG | 0.394401 | 3_1:-2663871 | None:intergenic |
GTTTGTAGCATTACAAGTAC+TGG | 0.394698 | 3_1:+2665951 | Msa0344080:CDS |
TTAAGCTCAGCAATCACTTC+AGG | 0.402179 | 3_1:-2665847 | None:intergenic |
AGAGTGGTGGTATAGATATC+GGG | 0.408274 | 3_1:+2665551 | Msa0344080:CDS |
TTGCATTGGTACCCTCTTCT+GGG | 0.417526 | 3_1:+2665476 | Msa0344080:CDS |
TAGATATCGGGGAAGGATAC+GGG | 0.418824 | 3_1:+2665563 | Msa0344080:CDS |
TGAATTAACTACTCTGTTCA+AGG | 0.421835 | 3_1:+2665432 | Msa0344080:CDS |
TCATTGGAAGCGATCTTGAT+TGG | 0.423771 | 3_1:+2665881 | Msa0344080:CDS |
TACGGGGATACCGATTTATT+GGG | 0.430242 | 3_1:+2665580 | Msa0344080:CDS |
GGTATAATCTTAGGAGAGAT+TGG | 0.437960 | 3_1:+2665152 | Msa0344080:CDS |
ATAGATATCGGGGAAGGATA+CGG | 0.443209 | 3_1:+2665562 | Msa0344080:CDS |
AGCAAACTTGCAGAACCTAA+TGG | 0.449923 | 3_1:-2666201 | None:intergenic |
GTATGGAAAGTTTAGGCAAA+AGG | 0.457845 | 3_1:+2665393 | Msa0344080:CDS |
CAACATCAGCTGACAACATC+GGG | 0.459096 | 3_1:-2665908 | None:intergenic |
GTGTAAGACCAAAGGCTGAA+TGG | 0.473181 | 3_1:+2664966 | Msa0344080:CDS |
ATCCACCGTATGGAAAGTTT+AGG | 0.475941 | 3_1:+2665386 | Msa0344080:CDS |
AATAGCACCTCCCAATAAAT+CGG | 0.477242 | 3_1:-2665590 | None:intergenic |
ACTTCCGAGCTCGGGAAGAA+TGG | 0.477604 | 3_1:-2663921 | None:intergenic |
TTTCCAGCCTTTCTTTGTAA+GGG | 0.482225 | 3_1:-2665062 | None:intergenic |
TGTAAGACCAAAGGCTGAAT+GGG | 0.486012 | 3_1:+2664967 | Msa0344080:CDS |
AGCAAACACATAAGCTTAAG+TGG | 0.494403 | 3_1:-2666143 | None:intergenic |
AGCTCGGAAGTTGTAACATC+AGG | 0.495153 | 3_1:+2663933 | Msa0344080:CDS |
GGAGGTGCTATTGCTGGAGT+TGG | 0.495766 | 3_1:+2665601 | Msa0344080:CDS |
TCTTCTGGGATACCACCTAA+TGG | 0.496004 | 3_1:+2665490 | Msa0344080:CDS |
ATGGTATAAGTTGTTTGCTA+AGG | 0.498533 | 3_1:+2665180 | Msa0344080:CDS |
TTAGGAGAGATTGGCAAGAA+TGG | 0.506891 | 3_1:+2665161 | Msa0344080:CDS |
ATGTTACAACTTCCGAGCTC+GGG | 0.507050 | 3_1:-2663929 | None:intergenic |
TTTGCTAAGGAGACACTTGT+GGG | 0.512651 | 3_1:+2665193 | Msa0344080:CDS |
GATGTTACAACTTCCGAGCT+CGG | 0.515749 | 3_1:-2663930 | None:intergenic |
GGAACAACCCTTACAAAGAA+AGG | 0.520070 | 3_1:+2665055 | Msa0344080:CDS |
ATGAAGGCACTGATAGTACC+TGG | 0.520648 | 3_1:+2665814 | Msa0344080:CDS |
GTCGCACACAGCTGCTATGA+AGG | 0.526769 | 3_1:+2665798 | Msa0344080:CDS |
TGCCTCCAAAAGTGATTCTG+AGG | 0.534987 | 3_1:-2663787 | None:intergenic |
TATGGAAAGTTTAGGCAAAA+GGG | 0.535211 | 3_1:+2665394 | Msa0344080:CDS |
CAACCCTTACAAAGAAAGGC+TGG | 0.537841 | 3_1:+2665059 | Msa0344080:CDS |
AGATCCATTCTTCCCGAGCT+CGG | 0.546963 | 3_1:+2663917 | Msa0344080:CDS |
CGCATCACTATCATTTCCAC+GGG | 0.547701 | 3_1:-2665656 | None:intergenic |
GTGATGCGTGTAGCGTGAAG+AGG | 0.550255 | 3_1:+2665671 | Msa0344080:CDS |
GCTACAAACATTTCCCTCGC+GGG | 0.550949 | 3_1:-2665937 | None:intergenic |
CCAACTTTAATGAGAAAACT+GGG | 0.556179 | 3_1:+2665095 | Msa0344080:CDS |
CGTGTAGCGTGAAGAGGCGA+AGG | 0.564658 | 3_1:+2665677 | Msa0344080:CDS |
GATTGCTGAGCTTAATTGCA+TGG | 0.565046 | 3_1:+2665855 | Msa0344080:CDS |
ACGCATCACTATCATTTCCA+CGG | 0.565136 | 3_1:-2665657 | None:intergenic |
TCAAGGTTTCTGATGCAGAA+AGG | 0.566852 | 3_1:+2665737 | Msa0344080:CDS |
TTTGTAGCATTACAAGTACT+GGG | 0.568955 | 3_1:+2665952 | Msa0344080:CDS |
AACATGAAGAGGAAAGACAT+TGG | 0.569372 | 3_1:+2664932 | Msa0344080:CDS |
GGATATGGTCGATACTAGAA+AGG | 0.569942 | 3_1:+2665453 | Msa0344080:CDS |
TTGATTTCACGGTGGACTGG+AGG | 0.570075 | 3_1:-2663732 | None:intergenic |
AGCGTGAAGAGGCGAAGGGT+TGG | 0.570317 | 3_1:+2665682 | Msa0344080:CDS |
TGCCTAAACTTTCCATACGG+TGG | 0.571310 | 3_1:-2665388 | None:intergenic |
ATGCAGGAAAATCCACCGTA+TGG | 0.572978 | 3_1:+2665376 | Msa0344080:intron |
GGACAATGAGGAACATGAAG+AGG | 0.574669 | 3_1:+2664921 | Msa0344080:intron |
GTTTGCTAAGGAGACACTTG+TGG | 0.579425 | 3_1:+2665192 | Msa0344080:CDS |
CGATACTAGAAAGGTTGCAT+TGG | 0.580122 | 3_1:+2665462 | Msa0344080:CDS |
ACATAAGAAAGAAACTAAGT+AGG | 0.580248 | 3_1:-2666103 | None:intergenic |
GCCTCCAAAAGTGATTCTGA+GGG | 0.580392 | 3_1:-2663786 | None:intergenic |
CGCCTATGCTTTGAGAGTGG+TGG | 0.580624 | 3_1:+2665538 | Msa0344080:CDS |
TGATTTCACGGTGGACTGGA+GGG | 0.587302 | 3_1:-2663731 | None:intergenic |
AGATATCGGGGAAGGATACG+GGG | 0.587830 | 3_1:+2665564 | Msa0344080:CDS |
ACAACATCAGCTGACAACAT+CGG | 0.591838 | 3_1:-2665909 | None:intergenic |
TTTGAGATTCTATCACAGCT+AGG | 0.591976 | 3_1:-2666225 | None:intergenic |
AAAGACATTGGAGATAAAGG+AGG | 0.594640 | 3_1:+2664944 | Msa0344080:CDS |
CTTTAATGAGAAAACTGGGA+AGG | 0.595599 | 3_1:+2665099 | Msa0344080:CDS |
AGAGAAGAGAGAGAAAGAAG+AGG | 0.599037 | 3_1:-2663877 | None:intergenic |
TGGTTTGCTTAAGGACAATG+AGG | 0.599503 | 3_1:+2664909 | Msa0344080:intron |
AGCTCGGGAAGAATGGATCT+CGG | 0.607212 | 3_1:-2663914 | None:intergenic |
TCTACTTTCATAAATGGCAG+AGG | 0.608958 | 3_1:-2666021 | None:intergenic |
GGTGGTATAGATATCGGGGA+AGG | 0.608971 | 3_1:+2665556 | Msa0344080:CDS |
ACTTCAGGAATAGATGTCCC+AGG | 0.611416 | 3_1:-2665832 | None:intergenic |
ATAAGCAATTAACAAACAAG+TGG | 0.615520 | 3_1:+2665131 | Msa0344080:CDS |
ATTAGGTGGTATCCCAGAAG+AGG | 0.626494 | 3_1:-2665488 | None:intergenic |
GATGTTGTTTAAGCCCGCGA+GGG | 0.627996 | 3_1:+2665924 | Msa0344080:CDS |
TAGATGCACCTGATGAGTGG+TGG | 0.638418 | 3_1:+2665239 | Msa0344080:CDS |
GGGGATACCGATTTATTGGG+AGG | 0.641816 | 3_1:+2665583 | Msa0344080:CDS |
AGATGCACCTGATGAGTGGT+GGG | 0.645494 | 3_1:+2665240 | Msa0344080:CDS |
GAGTGGTGGTATAGATATCG+GGG | 0.648568 | 3_1:+2665552 | Msa0344080:CDS |
TAAAGGAGGTGTAAGACCAA+AGG | 0.652942 | 3_1:+2664958 | Msa0344080:CDS |
TGCTACAAACATTTCCCTCG+CGG | 0.656038 | 3_1:-2665938 | None:intergenic |
TACCACCACTCTCAAAGCAT+AGG | 0.658988 | 3_1:-2665540 | None:intergenic |
TTAGGTGGTATCCCAGAAGA+GGG | 0.662469 | 3_1:-2665487 | None:intergenic |
TGAAGGCACTGATAGTACCT+GGG | 0.672680 | 3_1:+2665815 | Msa0344080:CDS |
CTATAGATGCACCTGATGAG+TGG | 0.677735 | 3_1:+2665236 | Msa0344080:CDS |
TGATGTTGTTTAAGCCCGCG+AGG | 0.680542 | 3_1:+2665923 | Msa0344080:CDS |
TATCGCCTATGCTTTGAGAG+TGG | 0.702750 | 3_1:+2665535 | Msa0344080:CDS |
GTGTAGCGTGAAGAGGCGAA+GGG | 0.723526 | 3_1:+2665678 | Msa0344080:CDS |
TGCTGAGCTTAATTGCATGG+AGG | 0.754574 | 3_1:+2665858 | Msa0344080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAATTAAATTTGCA+TGG | + | chr3_1:2664079-2664098 | Msa0344080:intron | 10.0% |
!!! | TGTTTTTTTTTTTGATTTCA+CGG | - | chr3_1:2663746-2663765 | None:intergenic | 15.0% |
!! | AAAAAAAAAACATAGTTGTT+TGG | + | chr3_1:2663754-2663773 | Msa0344080:five_prime_UTR | 15.0% |
!! | AAAATGAATATAGAAAACTT+TGG | + | chr3_1:2664758-2664777 | Msa0344080:intron | 15.0% |
!! | TATATTAAATATGTTACCTA+AGG | + | chr3_1:2664874-2664893 | Msa0344080:intron | 15.0% |
!!! | TCTATAAAGTTAAACTGTTT+TGG | - | chr3_1:2664310-2664329 | None:intergenic | 20.0% |
!!! | AATAAGTATTGTATTCCATT+CGG | + | chr3_1:2664377-2664396 | Msa0344080:intron | 20.0% |
!!! | TCAAATAAAGTTGATGTATT+TGG | + | chr3_1:2664423-2664442 | Msa0344080:intron | 20.0% |
!!! | CTTGGTTTATTTTCAATATA+AGG | - | chr3_1:2664795-2664814 | None:intergenic | 20.0% |
!! | GTAGTTAATTCAATGTAAAA+TGG | - | chr3_1:2665424-2665443 | None:intergenic | 20.0% |
!! | TGAGAAGAATAAAAATATCA+AGG | + | chr3_1:2665720-2665739 | Msa0344080:CDS | 20.0% |
!! | TTAGTTTCTTTCTTATGTAT+TGG | + | chr3_1:2666108-2666127 | Msa0344080:three_prime_UTR | 20.0% |
!!! | TTTTTTTTTTGATTTCACGG+TGG | - | chr3_1:2663743-2663762 | None:intergenic | 25.0% |
! | AAAAACATAGTTGTTTGGTT+TGG | + | chr3_1:2663759-2663778 | Msa0344080:five_prime_UTR | 25.0% |
! | TTTGCAACATCAACATTATT+AGG | + | chr3_1:2663984-2664003 | Msa0344080:intron | 25.0% |
!!! | ATCAGTAAGAGTATTATTCT+AGG | + | chr3_1:2664044-2664063 | Msa0344080:intron | 25.0% |
!! | TAAAATCGATTTCCTTCAAA+AGG | + | chr3_1:2664104-2664123 | Msa0344080:intron | 25.0% |
!! | AAAATCGATTTCCTTCAAAA+GGG | + | chr3_1:2664105-2664124 | Msa0344080:intron | 25.0% |
! | TCAAATAATCCAATTCAAAG+AGG | - | chr3_1:2664150-2664169 | None:intergenic | 25.0% |
!!! | ATAAGTTTTGTTAGACTGTT+TGG | + | chr3_1:2664184-2664203 | Msa0344080:intron | 25.0% |
!!! | TAAGTTTTGTTAGACTGTTT+GGG | + | chr3_1:2664185-2664204 | Msa0344080:intron | 25.0% |
!!! | CCTATTTTTGCTTATGATTA+GGG | - | chr3_1:2664403-2664422 | None:intergenic | 25.0% |
!!! | ACCTATTTTTGCTTATGATT+AGG | - | chr3_1:2664404-2664423 | None:intergenic | 25.0% |
! | TTCAGAAACAATGAAAACAA+TGG | + | chr3_1:2664626-2664645 | Msa0344080:intron | 25.0% |
!!! | AATTTCTGAAATGCTAGATT+TGG | + | chr3_1:2664664-2664683 | Msa0344080:intron | 25.0% |
! | TAATTGTCTACTAAATGACT+TGG | - | chr3_1:2664813-2664832 | None:intergenic | 25.0% |
! | ATAAGCAATTAACAAACAAG+TGG | + | chr3_1:2665131-2665150 | Msa0344080:CDS | 25.0% |
!!! | TGATTAGTTTATAAACATGC+AGG | + | chr3_1:2665360-2665379 | Msa0344080:intron | 25.0% |
!! | TTATTTTCATCTATGCCATT+AGG | - | chr3_1:2665508-2665527 | None:intergenic | 25.0% |
! | GATCAATCTACTTTCATAAA+TGG | - | chr3_1:2666030-2666049 | None:intergenic | 25.0% |
! | ACATAAGAAAGAAACTAAGT+AGG | - | chr3_1:2666106-2666125 | None:intergenic | 25.0% |
!! | TTTGACAATGTTGATTGAAT+TGG | + | chr3_1:2666173-2666192 | Msa0344080:three_prime_UTR | 25.0% |
! | ATTGAATTGGTTAAACCATT+AGG | + | chr3_1:2666186-2666205 | Msa0344080:three_prime_UTR | 25.0% |
GGAATACAATACTTATTGCT+TGG | - | chr3_1:2664374-2664393 | None:intergenic | 30.0% | |
CCCTAATCATAAGCAAAAAT+AGG | + | chr3_1:2664400-2664419 | Msa0344080:intron | 30.0% | |
!! | GATGTATTTGGCTCAAATTT+TGG | + | chr3_1:2664435-2664454 | Msa0344080:intron | 30.0% |
! | TCAACGAAAATTGAGGTATT+TGG | - | chr3_1:2664462-2664481 | None:intergenic | 30.0% |
TAATTGGTCAACGAAAATTG+AGG | - | chr3_1:2664469-2664488 | None:intergenic | 30.0% | |
! | TCAATTTTCGTTGACCAATT+AGG | + | chr3_1:2664468-2664487 | Msa0344080:intron | 30.0% |
! | CAATTTTCGTTGACCAATTA+GGG | + | chr3_1:2664469-2664488 | Msa0344080:intron | 30.0% |
CAATTGTGATAGAGAGAATA+TGG | + | chr3_1:2664579-2664598 | Msa0344080:intron | 30.0% | |
! | TATTTTTCTTTCTTGCACCA+AGG | + | chr3_1:2664831-2664850 | Msa0344080:intron | 30.0% |
!!! | TGCTTATTTTGGTTTGCTTA+AGG | + | chr3_1:2664900-2664919 | Msa0344080:intron | 30.0% |
TCCAACTTTAATGAGAAAAC+TGG | + | chr3_1:2665094-2665113 | Msa0344080:CDS | 30.0% | |
CCAACTTTAATGAGAAAACT+GGG | + | chr3_1:2665095-2665114 | Msa0344080:CDS | 30.0% | |
CAAACAAGTGGTATAATCTT+AGG | + | chr3_1:2665143-2665162 | Msa0344080:CDS | 30.0% | |
! | ATGGTATAAGTTGTTTGCTA+AGG | + | chr3_1:2665180-2665199 | Msa0344080:CDS | 30.0% |
! | TTTTGCCTAAACTTTCCATA+CGG | - | chr3_1:2665394-2665413 | None:intergenic | 30.0% |
TATGGAAAGTTTAGGCAAAA+GGG | + | chr3_1:2665394-2665413 | Msa0344080:CDS | 30.0% | |
TGAATTAACTACTCTGTTCA+AGG | + | chr3_1:2665432-2665451 | Msa0344080:CDS | 30.0% | |
TTTGTAGCATTACAAGTACT+GGG | + | chr3_1:2665952-2665971 | Msa0344080:CDS | 30.0% | |
!! | CATTAGGCTAAAGCATTTTA+TGG | + | chr3_1:2666080-2666099 | Msa0344080:three_prime_UTR | 30.0% |
GTTGCAAAAATGAAGAGACA+GGG | - | chr3_1:2663972-2663991 | None:intergenic | 35.0% | |
TGTTGCAAAAATGAAGAGAC+AGG | - | chr3_1:2663973-2663992 | None:intergenic | 35.0% | |
TAAGCTATCGAAGAGAACTT+AGG | - | chr3_1:2664257-2664276 | None:intergenic | 35.0% | |
ATCAAGCAAAAAGACAACCT+TGG | - | chr3_1:2664851-2664870 | None:intergenic | 35.0% | |
! | ACCTAAGGACATGCTTATTT+TGG | + | chr3_1:2664889-2664908 | Msa0344080:intron | 35.0% |
ACCAAAATAAGCATGTCCTT+AGG | - | chr3_1:2664893-2664912 | None:intergenic | 35.0% | |
AACATGAAGAGGAAAGACAT+TGG | + | chr3_1:2664932-2664951 | Msa0344080:CDS | 35.0% | |
AGGAAAGACATTGGAGATAA+AGG | + | chr3_1:2664941-2664960 | Msa0344080:CDS | 35.0% | |
AAAGACATTGGAGATAAAGG+AGG | + | chr3_1:2664944-2664963 | Msa0344080:CDS | 35.0% | |
ATGCCTTGATGAAGTCAAAA+AGG | + | chr3_1:2665021-2665040 | Msa0344080:CDS | 35.0% | |
TGCCTTGATGAAGTCAAAAA+GGG | + | chr3_1:2665022-2665041 | Msa0344080:CDS | 35.0% | |
TTTCCAGCCTTTCTTTGTAA+GGG | - | chr3_1:2665065-2665084 | None:intergenic | 35.0% | |
ATTTCCAGCCTTTCTTTGTA+AGG | - | chr3_1:2665066-2665085 | None:intergenic | 35.0% | |
! | CCCAGTTTTCTCATTAAAGT+TGG | - | chr3_1:2665098-2665117 | None:intergenic | 35.0% |
CTTTAATGAGAAAACTGGGA+AGG | + | chr3_1:2665099-2665118 | Msa0344080:CDS | 35.0% | |
GGTATAATCTTAGGAGAGAT+TGG | + | chr3_1:2665152-2665171 | Msa0344080:CDS | 35.0% | |
GTATGGAAAGTTTAGGCAAA+AGG | + | chr3_1:2665393-2665412 | Msa0344080:CDS | 35.0% | |
AACTACTCTGTTCAAGGATA+TGG | + | chr3_1:2665438-2665457 | Msa0344080:CDS | 35.0% | |
! | TTTTCATCTATGCCATTAGG+TGG | - | chr3_1:2665505-2665524 | None:intergenic | 35.0% |
AATAGCACCTCCCAATAAAT+CGG | - | chr3_1:2665593-2665612 | None:intergenic | 35.0% | |
!! | ATAAATTTTAGCACATCCCG+TGG | + | chr3_1:2665640-2665659 | Msa0344080:CDS | 35.0% |
GTTTGTAGCATTACAAGTAC+TGG | + | chr3_1:2665951-2665970 | Msa0344080:CDS | 35.0% | |
!! | ATGAGCAAAGCTTGTTGAAT+TGG | + | chr3_1:2665977-2665996 | Msa0344080:CDS | 35.0% |
TCTACTTTCATAAATGGCAG+AGG | - | chr3_1:2666024-2666043 | None:intergenic | 35.0% | |
! | GATTTGAGTGCTTTTGCATT+AGG | + | chr3_1:2666064-2666083 | Msa0344080:three_prime_UTR | 35.0% |
AGCAAACACATAAGCTTAAG+TGG | - | chr3_1:2666146-2666165 | None:intergenic | 35.0% | |
! | TTTGAGATTCTATCACAGCT+AGG | - | chr3_1:2666228-2666247 | None:intergenic | 35.0% |
!!! | TTTTTGATTTCACGGTGGAC+TGG | - | chr3_1:2663738-2663757 | None:intergenic | 40.0% |
GAGAGAGAAAGAAGAGGTTA+GGG | - | chr3_1:2663874-2663893 | None:intergenic | 40.0% | |
AGAGAGAGAAAGAAGAGGTT+AGG | - | chr3_1:2663875-2663894 | None:intergenic | 40.0% | |
AGAGAAGAGAGAGAAAGAAG+AGG | - | chr3_1:2663880-2663899 | None:intergenic | 40.0% | |
ATGAAGAGACAGGGAAGAAA+AGG | - | chr3_1:2663963-2663982 | None:intergenic | 40.0% | |
! | CAATCAAGAAGCCCTTTTGA+AGG | - | chr3_1:2664119-2664138 | None:intergenic | 40.0% |
AAGGGCTTCTTGATTGCTTA+AGG | + | chr3_1:2664123-2664142 | Msa0344080:intron | 40.0% | |
AGGGCTTCTTGATTGCTTAA+GGG | + | chr3_1:2664124-2664143 | Msa0344080:intron | 40.0% | |
TATCATACCCTGTCCCTAAT+TGG | - | chr3_1:2664485-2664504 | None:intergenic | 40.0% | |
!! | TGGTTTGCTTAAGGACAATG+AGG | + | chr3_1:2664909-2664928 | Msa0344080:intron | 40.0% |
! | TAAAGGAGGTGTAAGACCAA+AGG | + | chr3_1:2664958-2664977 | Msa0344080:CDS | 40.0% |
TGTAAGACCAAAGGCTGAAT+GGG | + | chr3_1:2664967-2664986 | Msa0344080:CDS | 40.0% | |
!!! | CTCCCTTTTTGACTTCATCA+AGG | - | chr3_1:2665027-2665046 | None:intergenic | 40.0% |
GTCAAAAAGGGAGAACACAA+TGG | + | chr3_1:2665034-2665053 | Msa0344080:CDS | 40.0% | |
GGAACAACCCTTACAAAGAA+AGG | + | chr3_1:2665055-2665074 | Msa0344080:CDS | 40.0% | |
TTAGGAGAGATTGGCAAGAA+TGG | + | chr3_1:2665161-2665180 | Msa0344080:CDS | 40.0% | |
TTTGCTAAGGAGACACTTGT+GGG | + | chr3_1:2665193-2665212 | Msa0344080:CDS | 40.0% | |
ATCCACCGTATGGAAAGTTT+AGG | + | chr3_1:2665386-2665405 | Msa0344080:CDS | 40.0% | |
GGATATGGTCGATACTAGAA+AGG | + | chr3_1:2665453-2665472 | Msa0344080:CDS | 40.0% | |
CGATACTAGAAAGGTTGCAT+TGG | + | chr3_1:2665462-2665481 | Msa0344080:CDS | 40.0% | |
GAGAGTGGTGGTATAGATAT+CGG | + | chr3_1:2665550-2665569 | Msa0344080:CDS | 40.0% | |
AGAGTGGTGGTATAGATATC+GGG | + | chr3_1:2665551-2665570 | Msa0344080:CDS | 40.0% | |
ATAGATATCGGGGAAGGATA+CGG | + | chr3_1:2665562-2665581 | Msa0344080:CDS | 40.0% | |
!! | ATACGGGGATACCGATTTAT+TGG | + | chr3_1:2665579-2665598 | Msa0344080:CDS | 40.0% |
!! | TACGGGGATACCGATTTATT+GGG | + | chr3_1:2665580-2665599 | Msa0344080:CDS | 40.0% |
ACGCATCACTATCATTTCCA+CGG | - | chr3_1:2665660-2665679 | None:intergenic | 40.0% | |
TCAAGGTTTCTGATGCAGAA+AGG | + | chr3_1:2665737-2665756 | Msa0344080:CDS | 40.0% | |
TTAAGCTCAGCAATCACTTC+AGG | - | chr3_1:2665850-2665869 | None:intergenic | 40.0% | |
GATTGCTGAGCTTAATTGCA+TGG | + | chr3_1:2665855-2665874 | Msa0344080:CDS | 40.0% | |
CTTAATTGCATGGAGGTCAT+TGG | + | chr3_1:2665865-2665884 | Msa0344080:CDS | 40.0% | |
TCATTGGAAGCGATCTTGAT+TGG | + | chr3_1:2665881-2665900 | Msa0344080:CDS | 40.0% | |
ACAACATCAGCTGACAACAT+CGG | - | chr3_1:2665912-2665931 | None:intergenic | 40.0% | |
AGCAAACTTGCAGAACCTAA+TGG | - | chr3_1:2666204-2666223 | None:intergenic | 40.0% | |
! | CGTTCCCTCAGAATCACTTT+TGG | + | chr3_1:2663782-2663801 | Msa0344080:five_prime_UTR | 45.0% |
!! | TCCCTCAGAATCACTTTTGG+AGG | + | chr3_1:2663785-2663804 | Msa0344080:five_prime_UTR | 45.0% |
GCCTCCAAAAGTGATTCTGA+GGG | - | chr3_1:2663789-2663808 | None:intergenic | 45.0% | |
TGCCTCCAAAAGTGATTCTG+AGG | - | chr3_1:2663790-2663809 | None:intergenic | 45.0% | |
ATGTTACAACTTCCGAGCTC+GGG | - | chr3_1:2663932-2663951 | None:intergenic | 45.0% | |
GATGTTACAACTTCCGAGCT+CGG | - | chr3_1:2663933-2663952 | None:intergenic | 45.0% | |
AGCTCGGAAGTTGTAACATC+AGG | + | chr3_1:2663933-2663952 | Msa0344080:CDS | 45.0% | |
GCTTAAGGGCCTCTTTGAAT+TGG | + | chr3_1:2664138-2664157 | Msa0344080:intron | 45.0% | |
TGCTTATGATTAGGGCCGAA+TGG | - | chr3_1:2664395-2664414 | None:intergenic | 45.0% | |
TTCGTTGACCAATTAGGGAC+AGG | + | chr3_1:2664474-2664493 | Msa0344080:intron | 45.0% | |
TCGTTGACCAATTAGGGACA+GGG | + | chr3_1:2664475-2664494 | Msa0344080:intron | 45.0% | |
GGACAATGAGGAACATGAAG+AGG | + | chr3_1:2664921-2664940 | Msa0344080:intron | 45.0% | |
GTGTAAGACCAAAGGCTGAA+TGG | + | chr3_1:2664966-2664985 | Msa0344080:CDS | 45.0% | |
TTGACATCCCATTCAGCCTT+TGG | - | chr3_1:2664977-2664996 | None:intergenic | 45.0% | |
CAACCCTTACAAAGAAAGGC+TGG | + | chr3_1:2665059-2665078 | Msa0344080:CDS | 45.0% | |
! | GTTTGCTAAGGAGACACTTG+TGG | + | chr3_1:2665192-2665211 | Msa0344080:CDS | 45.0% |
CTATAGATGCACCTGATGAG+TGG | + | chr3_1:2665236-2665255 | Msa0344080:CDS | 45.0% | |
! | TTTTTCTCCCACCACTCATC+AGG | - | chr3_1:2665250-2665269 | None:intergenic | 45.0% |
! | GTGGTGGGAGAAAAAACAAC+TGG | + | chr3_1:2665255-2665274 | Msa0344080:CDS | 45.0% |
ATGCAGGAAAATCCACCGTA+TGG | + | chr3_1:2665376-2665395 | Msa0344080:intron | 45.0% | |
TGCCTAAACTTTCCATACGG+TGG | - | chr3_1:2665391-2665410 | None:intergenic | 45.0% | |
! | TTGCATTGGTACCCTCTTCT+GGG | + | chr3_1:2665476-2665495 | Msa0344080:CDS | 45.0% |
TTAGGTGGTATCCCAGAAGA+GGG | - | chr3_1:2665490-2665509 | None:intergenic | 45.0% | |
ATTAGGTGGTATCCCAGAAG+AGG | - | chr3_1:2665491-2665510 | None:intergenic | 45.0% | |
!! | TCTTCTGGGATACCACCTAA+TGG | + | chr3_1:2665490-2665509 | Msa0344080:CDS | 45.0% |
!! | TATCGCCTATGCTTTGAGAG+TGG | + | chr3_1:2665535-2665554 | Msa0344080:CDS | 45.0% |
TACCACCACTCTCAAAGCAT+AGG | - | chr3_1:2665543-2665562 | None:intergenic | 45.0% | |
GAGTGGTGGTATAGATATCG+GGG | + | chr3_1:2665552-2665571 | Msa0344080:CDS | 45.0% | |
TAGATATCGGGGAAGGATAC+GGG | + | chr3_1:2665563-2665582 | Msa0344080:CDS | 45.0% | |
!! | TTATTGGGAGGTGCTATTGC+TGG | + | chr3_1:2665595-2665614 | Msa0344080:CDS | 45.0% |
CGCATCACTATCATTTCCAC+GGG | - | chr3_1:2665659-2665678 | None:intergenic | 45.0% | |
!! | ATGAAGGCACTGATAGTACC+TGG | + | chr3_1:2665814-2665833 | Msa0344080:CDS | 45.0% |
!! | TGAAGGCACTGATAGTACCT+GGG | + | chr3_1:2665815-2665834 | Msa0344080:CDS | 45.0% |
ACTTCAGGAATAGATGTCCC+AGG | - | chr3_1:2665835-2665854 | None:intergenic | 45.0% | |
TGCTGAGCTTAATTGCATGG+AGG | + | chr3_1:2665858-2665877 | Msa0344080:CDS | 45.0% | |
CAACATCAGCTGACAACATC+GGG | - | chr3_1:2665911-2665930 | None:intergenic | 45.0% | |
TGCTACAAACATTTCCCTCG+CGG | - | chr3_1:2665941-2665960 | None:intergenic | 45.0% | |
!! | TGATTTCACGGTGGACTGGA+GGG | - | chr3_1:2663734-2663753 | None:intergenic | 50.0% |
!! | TTGATTTCACGGTGGACTGG+AGG | - | chr3_1:2663735-2663754 | None:intergenic | 50.0% |
AGCTCGGGAAGAATGGATCT+CGG | - | chr3_1:2663917-2663936 | None:intergenic | 50.0% | |
AGATCCATTCTTCCCGAGCT+CGG | + | chr3_1:2663917-2663936 | Msa0344080:CDS | 50.0% | |
TAGATGCACCTGATGAGTGG+TGG | + | chr3_1:2665239-2665258 | Msa0344080:CDS | 50.0% | |
AGATGCACCTGATGAGTGGT+GGG | + | chr3_1:2665240-2665259 | Msa0344080:CDS | 50.0% | |
! | GTTGCATTGGTACCCTCTTC+TGG | + | chr3_1:2665475-2665494 | Msa0344080:CDS | 50.0% |
GGTGGTATAGATATCGGGGA+AGG | + | chr3_1:2665556-2665575 | Msa0344080:CDS | 50.0% | |
AGATATCGGGGAAGGATACG+GGG | + | chr3_1:2665564-2665583 | Msa0344080:CDS | 50.0% | |
!! | GGGGATACCGATTTATTGGG+AGG | + | chr3_1:2665583-2665602 | Msa0344080:CDS | 50.0% |
! | TGATGTTGTTTAAGCCCGCG+AGG | + | chr3_1:2665923-2665942 | Msa0344080:CDS | 50.0% |
! | GATGTTGTTTAAGCCCGCGA+GGG | + | chr3_1:2665924-2665943 | Msa0344080:CDS | 50.0% |
GCTACAAACATTTCCCTCGC+GGG | - | chr3_1:2665940-2665959 | None:intergenic | 50.0% | |
ACTTCCGAGCTCGGGAAGAA+TGG | - | chr3_1:2663924-2663943 | None:intergenic | 55.0% | |
!! | CGCCTATGCTTTGAGAGTGG+TGG | + | chr3_1:2665538-2665557 | Msa0344080:CDS | 55.0% |
!! | GGAGGTGCTATTGCTGGAGT+TGG | + | chr3_1:2665601-2665620 | Msa0344080:CDS | 55.0% |
GTGATGCGTGTAGCGTGAAG+AGG | + | chr3_1:2665671-2665690 | Msa0344080:CDS | 55.0% | |
GTGTAGCGTGAAGAGGCGAA+GGG | + | chr3_1:2665678-2665697 | Msa0344080:CDS | 55.0% | |
GTCGCACACAGCTGCTATGA+AGG | + | chr3_1:2665798-2665817 | Msa0344080:CDS | 55.0% | |
CGTGTAGCGTGAAGAGGCGA+AGG | + | chr3_1:2665677-2665696 | Msa0344080:CDS | 60.0% | |
AGCGTGAAGAGGCGAAGGGT+TGG | + | chr3_1:2665682-2665701 | Msa0344080:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 2663728 | 2666291 | 2663728 | ID=Msa0344080;Name=Msa0344080 |
chr3_1 | mRNA | 2663728 | 2666291 | 2663728 | ID=Msa0344080-mRNA-1;Parent=Msa0344080;Name=Msa0344080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=99|1|1|1|0.5|0.33|3|244|382 |
chr3_1 | exon | 2663728 | 2663954 | 2663728 | ID=Msa0344080-mRNA-1:exon:783;Parent=Msa0344080-mRNA-1 |
chr3_1 | exon | 2664922 | 2665276 | 2664922 | ID=Msa0344080-mRNA-1:exon:784;Parent=Msa0344080-mRNA-1 |
chr3_1 | exon | 2665382 | 2666291 | 2665382 | ID=Msa0344080-mRNA-1:exon:785;Parent=Msa0344080-mRNA-1 |
chr3_1 | five_prime_UTR | 2663728 | 2663826 | 2663728 | ID=Msa0344080-mRNA-1:five_prime_utr;Parent=Msa0344080-mRNA-1 |
chr3_1 | CDS | 2663827 | 2663954 | 2663827 | ID=Msa0344080-mRNA-1:cds;Parent=Msa0344080-mRNA-1 |
chr3_1 | CDS | 2664922 | 2665276 | 2664922 | ID=Msa0344080-mRNA-1:cds;Parent=Msa0344080-mRNA-1 |
chr3_1 | CDS | 2665382 | 2666047 | 2665382 | ID=Msa0344080-mRNA-1:cds;Parent=Msa0344080-mRNA-1 |
chr3_1 | three_prime_UTR | 2666048 | 2666291 | 2666048 | ID=Msa0344080-mRNA-1:three_prime_utr;Parent=Msa0344080-mRNA-1 |
Gene Sequence |
Protein sequence |