AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344080 MtrunA17_Chr2g0295811 92.825 223 16 0 158 380 9 231 9.11e-152 427
Msa0344080 MtrunA17_Chr1g0172741 44.444 324 160 6 58 380 19 323 2.33e-89 272
Msa0344080 MtrunA17_Chr2g0285481 44.444 324 160 6 58 380 19 323 1.03e-88 270
Msa0344080 MtrunA17_Chr8g0334551 45.092 326 160 7 60 381 20 330 3.11e-85 262
Msa0344080 MtrunA17_Chr2g0321391 44.275 262 127 5 119 380 3 245 6.38e-67 212
Msa0344080 MtrunA17_Chr5g0422701 42.922 219 106 5 162 380 14 213 7.27e-48 162
Msa0344080 MtrunA17_Chr8g0362511 24.684 316 209 6 62 370 68 361 1.19e-25 106
Msa0344080 MtrunA17_Chr2g0295611 53.535 99 38 2 140 235 1 94 2.56e-25 98.6
Msa0344080 MtrunA17_Chr5g0402821 25.472 318 215 7 62 370 16 320 1.40e-22 97.1
Msa0344080 MtrunA17_Chr5g0422691 44.706 85 46 1 58 141 19 103 2.91e-20 85.1
Msa0344080 MtrunA17_Chr3g0113081 33.094 139 92 1 61 199 184 321 1.57e-17 84.3
Msa0344080 MtrunA17_Chr3g0113081 34.884 129 83 1 62 190 383 510 1.04e-15 79.0
Msa0344080 MtrunA17_Chr3g0113081 33.333 123 81 1 62 184 8 129 1.85e-13 72.0
Msa0344080 MtrunA17_Chr6g0469501 50.820 61 28 1 320 380 1 59 1.34e-16 73.6
Msa0344080 MtrunA17_Chr5g0405761 26.901 171 122 2 18 186 4 173 5.02e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344080 AT5G05800.1 32.117 137 92 1 62 198 167 302 1.64e-15 78.2
Msa0344080 AT5G05800.1 32.143 112 75 1 59 170 1 111 5.04e-15 76.6
Msa0344080 AT5G05800.5 32.117 137 92 1 62 198 167 302 1.64e-15 78.2
Msa0344080 AT5G05800.5 32.143 112 75 1 59 170 1 111 5.04e-15 76.6
Msa0344080 AT5G05800.3 32.117 137 92 1 62 198 167 302 1.64e-15 78.2
Msa0344080 AT5G05800.3 32.143 112 75 1 59 170 1 111 5.04e-15 76.6
Msa0344080 AT5G05800.2 32.117 137 92 1 62 198 167 302 1.64e-15 78.2
Msa0344080 AT5G05800.2 32.143 112 75 1 59 170 1 111 5.04e-15 76.6
Msa0344080 AT5G05800.4 32.117 137 92 1 62 198 167 302 1.64e-15 78.2
Msa0344080 AT5G05800.4 32.143 112 75 1 59 170 1 111 5.04e-15 76.6
Msa0344080 AT3G11290.2 29.545 132 92 1 62 193 165 295 6.60e-13 70.1
Msa0344080 AT3G11290.1 29.545 132 92 1 62 193 165 295 6.60e-13 70.1
Msa0344080 AT3G11310.1 31.250 144 91 3 60 197 171 312 3.78e-11 65.1

Find 106 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCATTGGTACCCTCTTC+TGG 0.207423 3_1:+2665475 Msa0344080:CDS
GATCAATCTACTTTCATAAA+TGG 0.225444 3_1:-2666027 None:intergenic
CGTTCCCTCAGAATCACTTT+TGG 0.268153 3_1:+2663782 Msa0344080:five_prime_UTR
AGGAAAGACATTGGAGATAA+AGG 0.272766 3_1:+2664941 Msa0344080:CDS
TCCAACTTTAATGAGAAAAC+TGG 0.275778 3_1:+2665094 Msa0344080:CDS
ATACGGGGATACCGATTTAT+TGG 0.288403 3_1:+2665579 Msa0344080:CDS
ATGCCTTGATGAAGTCAAAA+AGG 0.298025 3_1:+2665021 Msa0344080:CDS
CAAACAAGTGGTATAATCTT+AGG 0.300026 3_1:+2665143 Msa0344080:CDS
ATTGAATTGGTTAAACCATT+AGG 0.306101 3_1:+2666186 Msa0344080:three_prime_UTR
TTGACATCCCATTCAGCCTT+TGG 0.309578 3_1:-2664974 None:intergenic
ATGAGCAAAGCTTGTTGAAT+TGG 0.320958 3_1:+2665977 Msa0344080:CDS
GTAGTTAATTCAATGTAAAA+TGG 0.325846 3_1:-2665421 None:intergenic
AACTACTCTGTTCAAGGATA+TGG 0.339439 3_1:+2665438 Msa0344080:CDS
AGAGAGAGAAAGAAGAGGTT+AGG 0.340973 3_1:-2663872 None:intergenic
TTAGTTTCTTTCTTATGTAT+TGG 0.344398 3_1:+2666108 Msa0344080:three_prime_UTR
ATTTCCAGCCTTTCTTTGTA+AGG 0.360922 3_1:-2665063 None:intergenic
TTTGACAATGTTGATTGAAT+TGG 0.365985 3_1:+2666173 Msa0344080:three_prime_UTR
GAGAGTGGTGGTATAGATAT+CGG 0.367630 3_1:+2665550 Msa0344080:CDS
TTATTGGGAGGTGCTATTGC+TGG 0.381064 3_1:+2665595 Msa0344080:CDS
CTTAATTGCATGGAGGTCAT+TGG 0.389948 3_1:+2665865 Msa0344080:CDS
GAGAGAGAAAGAAGAGGTTA+GGG 0.394401 3_1:-2663871 None:intergenic
GTTTGTAGCATTACAAGTAC+TGG 0.394698 3_1:+2665951 Msa0344080:CDS
TTAAGCTCAGCAATCACTTC+AGG 0.402179 3_1:-2665847 None:intergenic
AGAGTGGTGGTATAGATATC+GGG 0.408274 3_1:+2665551 Msa0344080:CDS
TTGCATTGGTACCCTCTTCT+GGG 0.417526 3_1:+2665476 Msa0344080:CDS
TAGATATCGGGGAAGGATAC+GGG 0.418824 3_1:+2665563 Msa0344080:CDS
TGAATTAACTACTCTGTTCA+AGG 0.421835 3_1:+2665432 Msa0344080:CDS
TCATTGGAAGCGATCTTGAT+TGG 0.423771 3_1:+2665881 Msa0344080:CDS
TACGGGGATACCGATTTATT+GGG 0.430242 3_1:+2665580 Msa0344080:CDS
GGTATAATCTTAGGAGAGAT+TGG 0.437960 3_1:+2665152 Msa0344080:CDS
ATAGATATCGGGGAAGGATA+CGG 0.443209 3_1:+2665562 Msa0344080:CDS
AGCAAACTTGCAGAACCTAA+TGG 0.449923 3_1:-2666201 None:intergenic
GTATGGAAAGTTTAGGCAAA+AGG 0.457845 3_1:+2665393 Msa0344080:CDS
CAACATCAGCTGACAACATC+GGG 0.459096 3_1:-2665908 None:intergenic
GTGTAAGACCAAAGGCTGAA+TGG 0.473181 3_1:+2664966 Msa0344080:CDS
ATCCACCGTATGGAAAGTTT+AGG 0.475941 3_1:+2665386 Msa0344080:CDS
AATAGCACCTCCCAATAAAT+CGG 0.477242 3_1:-2665590 None:intergenic
ACTTCCGAGCTCGGGAAGAA+TGG 0.477604 3_1:-2663921 None:intergenic
TTTCCAGCCTTTCTTTGTAA+GGG 0.482225 3_1:-2665062 None:intergenic
TGTAAGACCAAAGGCTGAAT+GGG 0.486012 3_1:+2664967 Msa0344080:CDS
AGCAAACACATAAGCTTAAG+TGG 0.494403 3_1:-2666143 None:intergenic
AGCTCGGAAGTTGTAACATC+AGG 0.495153 3_1:+2663933 Msa0344080:CDS
GGAGGTGCTATTGCTGGAGT+TGG 0.495766 3_1:+2665601 Msa0344080:CDS
TCTTCTGGGATACCACCTAA+TGG 0.496004 3_1:+2665490 Msa0344080:CDS
ATGGTATAAGTTGTTTGCTA+AGG 0.498533 3_1:+2665180 Msa0344080:CDS
TTAGGAGAGATTGGCAAGAA+TGG 0.506891 3_1:+2665161 Msa0344080:CDS
ATGTTACAACTTCCGAGCTC+GGG 0.507050 3_1:-2663929 None:intergenic
TTTGCTAAGGAGACACTTGT+GGG 0.512651 3_1:+2665193 Msa0344080:CDS
GATGTTACAACTTCCGAGCT+CGG 0.515749 3_1:-2663930 None:intergenic
GGAACAACCCTTACAAAGAA+AGG 0.520070 3_1:+2665055 Msa0344080:CDS
ATGAAGGCACTGATAGTACC+TGG 0.520648 3_1:+2665814 Msa0344080:CDS
GTCGCACACAGCTGCTATGA+AGG 0.526769 3_1:+2665798 Msa0344080:CDS
TGCCTCCAAAAGTGATTCTG+AGG 0.534987 3_1:-2663787 None:intergenic
TATGGAAAGTTTAGGCAAAA+GGG 0.535211 3_1:+2665394 Msa0344080:CDS
CAACCCTTACAAAGAAAGGC+TGG 0.537841 3_1:+2665059 Msa0344080:CDS
AGATCCATTCTTCCCGAGCT+CGG 0.546963 3_1:+2663917 Msa0344080:CDS
CGCATCACTATCATTTCCAC+GGG 0.547701 3_1:-2665656 None:intergenic
GTGATGCGTGTAGCGTGAAG+AGG 0.550255 3_1:+2665671 Msa0344080:CDS
GCTACAAACATTTCCCTCGC+GGG 0.550949 3_1:-2665937 None:intergenic
CCAACTTTAATGAGAAAACT+GGG 0.556179 3_1:+2665095 Msa0344080:CDS
CGTGTAGCGTGAAGAGGCGA+AGG 0.564658 3_1:+2665677 Msa0344080:CDS
GATTGCTGAGCTTAATTGCA+TGG 0.565046 3_1:+2665855 Msa0344080:CDS
ACGCATCACTATCATTTCCA+CGG 0.565136 3_1:-2665657 None:intergenic
TCAAGGTTTCTGATGCAGAA+AGG 0.566852 3_1:+2665737 Msa0344080:CDS
TTTGTAGCATTACAAGTACT+GGG 0.568955 3_1:+2665952 Msa0344080:CDS
AACATGAAGAGGAAAGACAT+TGG 0.569372 3_1:+2664932 Msa0344080:CDS
GGATATGGTCGATACTAGAA+AGG 0.569942 3_1:+2665453 Msa0344080:CDS
TTGATTTCACGGTGGACTGG+AGG 0.570075 3_1:-2663732 None:intergenic
AGCGTGAAGAGGCGAAGGGT+TGG 0.570317 3_1:+2665682 Msa0344080:CDS
TGCCTAAACTTTCCATACGG+TGG 0.571310 3_1:-2665388 None:intergenic
ATGCAGGAAAATCCACCGTA+TGG 0.572978 3_1:+2665376 Msa0344080:intron
GGACAATGAGGAACATGAAG+AGG 0.574669 3_1:+2664921 Msa0344080:intron
GTTTGCTAAGGAGACACTTG+TGG 0.579425 3_1:+2665192 Msa0344080:CDS
CGATACTAGAAAGGTTGCAT+TGG 0.580122 3_1:+2665462 Msa0344080:CDS
ACATAAGAAAGAAACTAAGT+AGG 0.580248 3_1:-2666103 None:intergenic
GCCTCCAAAAGTGATTCTGA+GGG 0.580392 3_1:-2663786 None:intergenic
CGCCTATGCTTTGAGAGTGG+TGG 0.580624 3_1:+2665538 Msa0344080:CDS
TGATTTCACGGTGGACTGGA+GGG 0.587302 3_1:-2663731 None:intergenic
AGATATCGGGGAAGGATACG+GGG 0.587830 3_1:+2665564 Msa0344080:CDS
ACAACATCAGCTGACAACAT+CGG 0.591838 3_1:-2665909 None:intergenic
TTTGAGATTCTATCACAGCT+AGG 0.591976 3_1:-2666225 None:intergenic
AAAGACATTGGAGATAAAGG+AGG 0.594640 3_1:+2664944 Msa0344080:CDS
CTTTAATGAGAAAACTGGGA+AGG 0.595599 3_1:+2665099 Msa0344080:CDS
AGAGAAGAGAGAGAAAGAAG+AGG 0.599037 3_1:-2663877 None:intergenic
TGGTTTGCTTAAGGACAATG+AGG 0.599503 3_1:+2664909 Msa0344080:intron
AGCTCGGGAAGAATGGATCT+CGG 0.607212 3_1:-2663914 None:intergenic
TCTACTTTCATAAATGGCAG+AGG 0.608958 3_1:-2666021 None:intergenic
GGTGGTATAGATATCGGGGA+AGG 0.608971 3_1:+2665556 Msa0344080:CDS
ACTTCAGGAATAGATGTCCC+AGG 0.611416 3_1:-2665832 None:intergenic
ATAAGCAATTAACAAACAAG+TGG 0.615520 3_1:+2665131 Msa0344080:CDS
ATTAGGTGGTATCCCAGAAG+AGG 0.626494 3_1:-2665488 None:intergenic
GATGTTGTTTAAGCCCGCGA+GGG 0.627996 3_1:+2665924 Msa0344080:CDS
TAGATGCACCTGATGAGTGG+TGG 0.638418 3_1:+2665239 Msa0344080:CDS
GGGGATACCGATTTATTGGG+AGG 0.641816 3_1:+2665583 Msa0344080:CDS
AGATGCACCTGATGAGTGGT+GGG 0.645494 3_1:+2665240 Msa0344080:CDS
GAGTGGTGGTATAGATATCG+GGG 0.648568 3_1:+2665552 Msa0344080:CDS
TAAAGGAGGTGTAAGACCAA+AGG 0.652942 3_1:+2664958 Msa0344080:CDS
TGCTACAAACATTTCCCTCG+CGG 0.656038 3_1:-2665938 None:intergenic
TACCACCACTCTCAAAGCAT+AGG 0.658988 3_1:-2665540 None:intergenic
TTAGGTGGTATCCCAGAAGA+GGG 0.662469 3_1:-2665487 None:intergenic
TGAAGGCACTGATAGTACCT+GGG 0.672680 3_1:+2665815 Msa0344080:CDS
CTATAGATGCACCTGATGAG+TGG 0.677735 3_1:+2665236 Msa0344080:CDS
TGATGTTGTTTAAGCCCGCG+AGG 0.680542 3_1:+2665923 Msa0344080:CDS
TATCGCCTATGCTTTGAGAG+TGG 0.702750 3_1:+2665535 Msa0344080:CDS
GTGTAGCGTGAAGAGGCGAA+GGG 0.723526 3_1:+2665678 Msa0344080:CDS
TGCTGAGCTTAATTGCATGG+AGG 0.754574 3_1:+2665858 Msa0344080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTAAATTTGCA+TGG + chr3_1:2664079-2664098 Msa0344080:intron 10.0%
!!! TGTTTTTTTTTTTGATTTCA+CGG - chr3_1:2663746-2663765 None:intergenic 15.0%
!! AAAAAAAAAACATAGTTGTT+TGG + chr3_1:2663754-2663773 Msa0344080:five_prime_UTR 15.0%
!! AAAATGAATATAGAAAACTT+TGG + chr3_1:2664758-2664777 Msa0344080:intron 15.0%
!! TATATTAAATATGTTACCTA+AGG + chr3_1:2664874-2664893 Msa0344080:intron 15.0%
!!! TCTATAAAGTTAAACTGTTT+TGG - chr3_1:2664310-2664329 None:intergenic 20.0%
!!! AATAAGTATTGTATTCCATT+CGG + chr3_1:2664377-2664396 Msa0344080:intron 20.0%
!!! TCAAATAAAGTTGATGTATT+TGG + chr3_1:2664423-2664442 Msa0344080:intron 20.0%
!!! CTTGGTTTATTTTCAATATA+AGG - chr3_1:2664795-2664814 None:intergenic 20.0%
!! GTAGTTAATTCAATGTAAAA+TGG - chr3_1:2665424-2665443 None:intergenic 20.0%
!! TGAGAAGAATAAAAATATCA+AGG + chr3_1:2665720-2665739 Msa0344080:CDS 20.0%
!! TTAGTTTCTTTCTTATGTAT+TGG + chr3_1:2666108-2666127 Msa0344080:three_prime_UTR 20.0%
!!! TTTTTTTTTTGATTTCACGG+TGG - chr3_1:2663743-2663762 None:intergenic 25.0%
! AAAAACATAGTTGTTTGGTT+TGG + chr3_1:2663759-2663778 Msa0344080:five_prime_UTR 25.0%
! TTTGCAACATCAACATTATT+AGG + chr3_1:2663984-2664003 Msa0344080:intron 25.0%
!!! ATCAGTAAGAGTATTATTCT+AGG + chr3_1:2664044-2664063 Msa0344080:intron 25.0%
!! TAAAATCGATTTCCTTCAAA+AGG + chr3_1:2664104-2664123 Msa0344080:intron 25.0%
!! AAAATCGATTTCCTTCAAAA+GGG + chr3_1:2664105-2664124 Msa0344080:intron 25.0%
! TCAAATAATCCAATTCAAAG+AGG - chr3_1:2664150-2664169 None:intergenic 25.0%
!!! ATAAGTTTTGTTAGACTGTT+TGG + chr3_1:2664184-2664203 Msa0344080:intron 25.0%
!!! TAAGTTTTGTTAGACTGTTT+GGG + chr3_1:2664185-2664204 Msa0344080:intron 25.0%
!!! CCTATTTTTGCTTATGATTA+GGG - chr3_1:2664403-2664422 None:intergenic 25.0%
!!! ACCTATTTTTGCTTATGATT+AGG - chr3_1:2664404-2664423 None:intergenic 25.0%
! TTCAGAAACAATGAAAACAA+TGG + chr3_1:2664626-2664645 Msa0344080:intron 25.0%
!!! AATTTCTGAAATGCTAGATT+TGG + chr3_1:2664664-2664683 Msa0344080:intron 25.0%
! TAATTGTCTACTAAATGACT+TGG - chr3_1:2664813-2664832 None:intergenic 25.0%
! ATAAGCAATTAACAAACAAG+TGG + chr3_1:2665131-2665150 Msa0344080:CDS 25.0%
!!! TGATTAGTTTATAAACATGC+AGG + chr3_1:2665360-2665379 Msa0344080:intron 25.0%
!! TTATTTTCATCTATGCCATT+AGG - chr3_1:2665508-2665527 None:intergenic 25.0%
! GATCAATCTACTTTCATAAA+TGG - chr3_1:2666030-2666049 None:intergenic 25.0%
! ACATAAGAAAGAAACTAAGT+AGG - chr3_1:2666106-2666125 None:intergenic 25.0%
!! TTTGACAATGTTGATTGAAT+TGG + chr3_1:2666173-2666192 Msa0344080:three_prime_UTR 25.0%
! ATTGAATTGGTTAAACCATT+AGG + chr3_1:2666186-2666205 Msa0344080:three_prime_UTR 25.0%
GGAATACAATACTTATTGCT+TGG - chr3_1:2664374-2664393 None:intergenic 30.0%
CCCTAATCATAAGCAAAAAT+AGG + chr3_1:2664400-2664419 Msa0344080:intron 30.0%
!! GATGTATTTGGCTCAAATTT+TGG + chr3_1:2664435-2664454 Msa0344080:intron 30.0%
! TCAACGAAAATTGAGGTATT+TGG - chr3_1:2664462-2664481 None:intergenic 30.0%
TAATTGGTCAACGAAAATTG+AGG - chr3_1:2664469-2664488 None:intergenic 30.0%
! TCAATTTTCGTTGACCAATT+AGG + chr3_1:2664468-2664487 Msa0344080:intron 30.0%
! CAATTTTCGTTGACCAATTA+GGG + chr3_1:2664469-2664488 Msa0344080:intron 30.0%
CAATTGTGATAGAGAGAATA+TGG + chr3_1:2664579-2664598 Msa0344080:intron 30.0%
! TATTTTTCTTTCTTGCACCA+AGG + chr3_1:2664831-2664850 Msa0344080:intron 30.0%
!!! TGCTTATTTTGGTTTGCTTA+AGG + chr3_1:2664900-2664919 Msa0344080:intron 30.0%
TCCAACTTTAATGAGAAAAC+TGG + chr3_1:2665094-2665113 Msa0344080:CDS 30.0%
CCAACTTTAATGAGAAAACT+GGG + chr3_1:2665095-2665114 Msa0344080:CDS 30.0%
CAAACAAGTGGTATAATCTT+AGG + chr3_1:2665143-2665162 Msa0344080:CDS 30.0%
! ATGGTATAAGTTGTTTGCTA+AGG + chr3_1:2665180-2665199 Msa0344080:CDS 30.0%
! TTTTGCCTAAACTTTCCATA+CGG - chr3_1:2665394-2665413 None:intergenic 30.0%
TATGGAAAGTTTAGGCAAAA+GGG + chr3_1:2665394-2665413 Msa0344080:CDS 30.0%
TGAATTAACTACTCTGTTCA+AGG + chr3_1:2665432-2665451 Msa0344080:CDS 30.0%
TTTGTAGCATTACAAGTACT+GGG + chr3_1:2665952-2665971 Msa0344080:CDS 30.0%
!! CATTAGGCTAAAGCATTTTA+TGG + chr3_1:2666080-2666099 Msa0344080:three_prime_UTR 30.0%
GTTGCAAAAATGAAGAGACA+GGG - chr3_1:2663972-2663991 None:intergenic 35.0%
TGTTGCAAAAATGAAGAGAC+AGG - chr3_1:2663973-2663992 None:intergenic 35.0%
TAAGCTATCGAAGAGAACTT+AGG - chr3_1:2664257-2664276 None:intergenic 35.0%
ATCAAGCAAAAAGACAACCT+TGG - chr3_1:2664851-2664870 None:intergenic 35.0%
! ACCTAAGGACATGCTTATTT+TGG + chr3_1:2664889-2664908 Msa0344080:intron 35.0%
ACCAAAATAAGCATGTCCTT+AGG - chr3_1:2664893-2664912 None:intergenic 35.0%
AACATGAAGAGGAAAGACAT+TGG + chr3_1:2664932-2664951 Msa0344080:CDS 35.0%
AGGAAAGACATTGGAGATAA+AGG + chr3_1:2664941-2664960 Msa0344080:CDS 35.0%
AAAGACATTGGAGATAAAGG+AGG + chr3_1:2664944-2664963 Msa0344080:CDS 35.0%
ATGCCTTGATGAAGTCAAAA+AGG + chr3_1:2665021-2665040 Msa0344080:CDS 35.0%
TGCCTTGATGAAGTCAAAAA+GGG + chr3_1:2665022-2665041 Msa0344080:CDS 35.0%
TTTCCAGCCTTTCTTTGTAA+GGG - chr3_1:2665065-2665084 None:intergenic 35.0%
ATTTCCAGCCTTTCTTTGTA+AGG - chr3_1:2665066-2665085 None:intergenic 35.0%
! CCCAGTTTTCTCATTAAAGT+TGG - chr3_1:2665098-2665117 None:intergenic 35.0%
CTTTAATGAGAAAACTGGGA+AGG + chr3_1:2665099-2665118 Msa0344080:CDS 35.0%
GGTATAATCTTAGGAGAGAT+TGG + chr3_1:2665152-2665171 Msa0344080:CDS 35.0%
GTATGGAAAGTTTAGGCAAA+AGG + chr3_1:2665393-2665412 Msa0344080:CDS 35.0%
AACTACTCTGTTCAAGGATA+TGG + chr3_1:2665438-2665457 Msa0344080:CDS 35.0%
! TTTTCATCTATGCCATTAGG+TGG - chr3_1:2665505-2665524 None:intergenic 35.0%
AATAGCACCTCCCAATAAAT+CGG - chr3_1:2665593-2665612 None:intergenic 35.0%
!! ATAAATTTTAGCACATCCCG+TGG + chr3_1:2665640-2665659 Msa0344080:CDS 35.0%
GTTTGTAGCATTACAAGTAC+TGG + chr3_1:2665951-2665970 Msa0344080:CDS 35.0%
!! ATGAGCAAAGCTTGTTGAAT+TGG + chr3_1:2665977-2665996 Msa0344080:CDS 35.0%
TCTACTTTCATAAATGGCAG+AGG - chr3_1:2666024-2666043 None:intergenic 35.0%
! GATTTGAGTGCTTTTGCATT+AGG + chr3_1:2666064-2666083 Msa0344080:three_prime_UTR 35.0%
AGCAAACACATAAGCTTAAG+TGG - chr3_1:2666146-2666165 None:intergenic 35.0%
! TTTGAGATTCTATCACAGCT+AGG - chr3_1:2666228-2666247 None:intergenic 35.0%
!!! TTTTTGATTTCACGGTGGAC+TGG - chr3_1:2663738-2663757 None:intergenic 40.0%
GAGAGAGAAAGAAGAGGTTA+GGG - chr3_1:2663874-2663893 None:intergenic 40.0%
AGAGAGAGAAAGAAGAGGTT+AGG - chr3_1:2663875-2663894 None:intergenic 40.0%
AGAGAAGAGAGAGAAAGAAG+AGG - chr3_1:2663880-2663899 None:intergenic 40.0%
ATGAAGAGACAGGGAAGAAA+AGG - chr3_1:2663963-2663982 None:intergenic 40.0%
! CAATCAAGAAGCCCTTTTGA+AGG - chr3_1:2664119-2664138 None:intergenic 40.0%
AAGGGCTTCTTGATTGCTTA+AGG + chr3_1:2664123-2664142 Msa0344080:intron 40.0%
AGGGCTTCTTGATTGCTTAA+GGG + chr3_1:2664124-2664143 Msa0344080:intron 40.0%
TATCATACCCTGTCCCTAAT+TGG - chr3_1:2664485-2664504 None:intergenic 40.0%
!! TGGTTTGCTTAAGGACAATG+AGG + chr3_1:2664909-2664928 Msa0344080:intron 40.0%
! TAAAGGAGGTGTAAGACCAA+AGG + chr3_1:2664958-2664977 Msa0344080:CDS 40.0%
TGTAAGACCAAAGGCTGAAT+GGG + chr3_1:2664967-2664986 Msa0344080:CDS 40.0%
!!! CTCCCTTTTTGACTTCATCA+AGG - chr3_1:2665027-2665046 None:intergenic 40.0%
GTCAAAAAGGGAGAACACAA+TGG + chr3_1:2665034-2665053 Msa0344080:CDS 40.0%
GGAACAACCCTTACAAAGAA+AGG + chr3_1:2665055-2665074 Msa0344080:CDS 40.0%
TTAGGAGAGATTGGCAAGAA+TGG + chr3_1:2665161-2665180 Msa0344080:CDS 40.0%
TTTGCTAAGGAGACACTTGT+GGG + chr3_1:2665193-2665212 Msa0344080:CDS 40.0%
ATCCACCGTATGGAAAGTTT+AGG + chr3_1:2665386-2665405 Msa0344080:CDS 40.0%
GGATATGGTCGATACTAGAA+AGG + chr3_1:2665453-2665472 Msa0344080:CDS 40.0%
CGATACTAGAAAGGTTGCAT+TGG + chr3_1:2665462-2665481 Msa0344080:CDS 40.0%
GAGAGTGGTGGTATAGATAT+CGG + chr3_1:2665550-2665569 Msa0344080:CDS 40.0%
AGAGTGGTGGTATAGATATC+GGG + chr3_1:2665551-2665570 Msa0344080:CDS 40.0%
ATAGATATCGGGGAAGGATA+CGG + chr3_1:2665562-2665581 Msa0344080:CDS 40.0%
!! ATACGGGGATACCGATTTAT+TGG + chr3_1:2665579-2665598 Msa0344080:CDS 40.0%
!! TACGGGGATACCGATTTATT+GGG + chr3_1:2665580-2665599 Msa0344080:CDS 40.0%
ACGCATCACTATCATTTCCA+CGG - chr3_1:2665660-2665679 None:intergenic 40.0%
TCAAGGTTTCTGATGCAGAA+AGG + chr3_1:2665737-2665756 Msa0344080:CDS 40.0%
TTAAGCTCAGCAATCACTTC+AGG - chr3_1:2665850-2665869 None:intergenic 40.0%
GATTGCTGAGCTTAATTGCA+TGG + chr3_1:2665855-2665874 Msa0344080:CDS 40.0%
CTTAATTGCATGGAGGTCAT+TGG + chr3_1:2665865-2665884 Msa0344080:CDS 40.0%
TCATTGGAAGCGATCTTGAT+TGG + chr3_1:2665881-2665900 Msa0344080:CDS 40.0%
ACAACATCAGCTGACAACAT+CGG - chr3_1:2665912-2665931 None:intergenic 40.0%
AGCAAACTTGCAGAACCTAA+TGG - chr3_1:2666204-2666223 None:intergenic 40.0%
! CGTTCCCTCAGAATCACTTT+TGG + chr3_1:2663782-2663801 Msa0344080:five_prime_UTR 45.0%
!! TCCCTCAGAATCACTTTTGG+AGG + chr3_1:2663785-2663804 Msa0344080:five_prime_UTR 45.0%
GCCTCCAAAAGTGATTCTGA+GGG - chr3_1:2663789-2663808 None:intergenic 45.0%
TGCCTCCAAAAGTGATTCTG+AGG - chr3_1:2663790-2663809 None:intergenic 45.0%
ATGTTACAACTTCCGAGCTC+GGG - chr3_1:2663932-2663951 None:intergenic 45.0%
GATGTTACAACTTCCGAGCT+CGG - chr3_1:2663933-2663952 None:intergenic 45.0%
AGCTCGGAAGTTGTAACATC+AGG + chr3_1:2663933-2663952 Msa0344080:CDS 45.0%
GCTTAAGGGCCTCTTTGAAT+TGG + chr3_1:2664138-2664157 Msa0344080:intron 45.0%
TGCTTATGATTAGGGCCGAA+TGG - chr3_1:2664395-2664414 None:intergenic 45.0%
TTCGTTGACCAATTAGGGAC+AGG + chr3_1:2664474-2664493 Msa0344080:intron 45.0%
TCGTTGACCAATTAGGGACA+GGG + chr3_1:2664475-2664494 Msa0344080:intron 45.0%
GGACAATGAGGAACATGAAG+AGG + chr3_1:2664921-2664940 Msa0344080:intron 45.0%
GTGTAAGACCAAAGGCTGAA+TGG + chr3_1:2664966-2664985 Msa0344080:CDS 45.0%
TTGACATCCCATTCAGCCTT+TGG - chr3_1:2664977-2664996 None:intergenic 45.0%
CAACCCTTACAAAGAAAGGC+TGG + chr3_1:2665059-2665078 Msa0344080:CDS 45.0%
! GTTTGCTAAGGAGACACTTG+TGG + chr3_1:2665192-2665211 Msa0344080:CDS 45.0%
CTATAGATGCACCTGATGAG+TGG + chr3_1:2665236-2665255 Msa0344080:CDS 45.0%
! TTTTTCTCCCACCACTCATC+AGG - chr3_1:2665250-2665269 None:intergenic 45.0%
! GTGGTGGGAGAAAAAACAAC+TGG + chr3_1:2665255-2665274 Msa0344080:CDS 45.0%
ATGCAGGAAAATCCACCGTA+TGG + chr3_1:2665376-2665395 Msa0344080:intron 45.0%
TGCCTAAACTTTCCATACGG+TGG - chr3_1:2665391-2665410 None:intergenic 45.0%
! TTGCATTGGTACCCTCTTCT+GGG + chr3_1:2665476-2665495 Msa0344080:CDS 45.0%
TTAGGTGGTATCCCAGAAGA+GGG - chr3_1:2665490-2665509 None:intergenic 45.0%
ATTAGGTGGTATCCCAGAAG+AGG - chr3_1:2665491-2665510 None:intergenic 45.0%
!! TCTTCTGGGATACCACCTAA+TGG + chr3_1:2665490-2665509 Msa0344080:CDS 45.0%
!! TATCGCCTATGCTTTGAGAG+TGG + chr3_1:2665535-2665554 Msa0344080:CDS 45.0%
TACCACCACTCTCAAAGCAT+AGG - chr3_1:2665543-2665562 None:intergenic 45.0%
GAGTGGTGGTATAGATATCG+GGG + chr3_1:2665552-2665571 Msa0344080:CDS 45.0%
TAGATATCGGGGAAGGATAC+GGG + chr3_1:2665563-2665582 Msa0344080:CDS 45.0%
!! TTATTGGGAGGTGCTATTGC+TGG + chr3_1:2665595-2665614 Msa0344080:CDS 45.0%
CGCATCACTATCATTTCCAC+GGG - chr3_1:2665659-2665678 None:intergenic 45.0%
!! ATGAAGGCACTGATAGTACC+TGG + chr3_1:2665814-2665833 Msa0344080:CDS 45.0%
!! TGAAGGCACTGATAGTACCT+GGG + chr3_1:2665815-2665834 Msa0344080:CDS 45.0%
ACTTCAGGAATAGATGTCCC+AGG - chr3_1:2665835-2665854 None:intergenic 45.0%
TGCTGAGCTTAATTGCATGG+AGG + chr3_1:2665858-2665877 Msa0344080:CDS 45.0%
CAACATCAGCTGACAACATC+GGG - chr3_1:2665911-2665930 None:intergenic 45.0%
TGCTACAAACATTTCCCTCG+CGG - chr3_1:2665941-2665960 None:intergenic 45.0%
!! TGATTTCACGGTGGACTGGA+GGG - chr3_1:2663734-2663753 None:intergenic 50.0%
!! TTGATTTCACGGTGGACTGG+AGG - chr3_1:2663735-2663754 None:intergenic 50.0%
AGCTCGGGAAGAATGGATCT+CGG - chr3_1:2663917-2663936 None:intergenic 50.0%
AGATCCATTCTTCCCGAGCT+CGG + chr3_1:2663917-2663936 Msa0344080:CDS 50.0%
TAGATGCACCTGATGAGTGG+TGG + chr3_1:2665239-2665258 Msa0344080:CDS 50.0%
AGATGCACCTGATGAGTGGT+GGG + chr3_1:2665240-2665259 Msa0344080:CDS 50.0%
! GTTGCATTGGTACCCTCTTC+TGG + chr3_1:2665475-2665494 Msa0344080:CDS 50.0%
GGTGGTATAGATATCGGGGA+AGG + chr3_1:2665556-2665575 Msa0344080:CDS 50.0%
AGATATCGGGGAAGGATACG+GGG + chr3_1:2665564-2665583 Msa0344080:CDS 50.0%
!! GGGGATACCGATTTATTGGG+AGG + chr3_1:2665583-2665602 Msa0344080:CDS 50.0%
! TGATGTTGTTTAAGCCCGCG+AGG + chr3_1:2665923-2665942 Msa0344080:CDS 50.0%
! GATGTTGTTTAAGCCCGCGA+GGG + chr3_1:2665924-2665943 Msa0344080:CDS 50.0%
GCTACAAACATTTCCCTCGC+GGG - chr3_1:2665940-2665959 None:intergenic 50.0%
ACTTCCGAGCTCGGGAAGAA+TGG - chr3_1:2663924-2663943 None:intergenic 55.0%
!! CGCCTATGCTTTGAGAGTGG+TGG + chr3_1:2665538-2665557 Msa0344080:CDS 55.0%
!! GGAGGTGCTATTGCTGGAGT+TGG + chr3_1:2665601-2665620 Msa0344080:CDS 55.0%
GTGATGCGTGTAGCGTGAAG+AGG + chr3_1:2665671-2665690 Msa0344080:CDS 55.0%
GTGTAGCGTGAAGAGGCGAA+GGG + chr3_1:2665678-2665697 Msa0344080:CDS 55.0%
GTCGCACACAGCTGCTATGA+AGG + chr3_1:2665798-2665817 Msa0344080:CDS 55.0%
CGTGTAGCGTGAAGAGGCGA+AGG + chr3_1:2665677-2665696 Msa0344080:CDS 60.0%
AGCGTGAAGAGGCGAAGGGT+TGG + chr3_1:2665682-2665701 Msa0344080:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 2663728 2666291 2663728 ID=Msa0344080;Name=Msa0344080
chr3_1 mRNA 2663728 2666291 2663728 ID=Msa0344080-mRNA-1;Parent=Msa0344080;Name=Msa0344080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=99|1|1|1|0.5|0.33|3|244|382
chr3_1 exon 2663728 2663954 2663728 ID=Msa0344080-mRNA-1:exon:783;Parent=Msa0344080-mRNA-1
chr3_1 exon 2664922 2665276 2664922 ID=Msa0344080-mRNA-1:exon:784;Parent=Msa0344080-mRNA-1
chr3_1 exon 2665382 2666291 2665382 ID=Msa0344080-mRNA-1:exon:785;Parent=Msa0344080-mRNA-1
chr3_1 five_prime_UTR 2663728 2663826 2663728 ID=Msa0344080-mRNA-1:five_prime_utr;Parent=Msa0344080-mRNA-1
chr3_1 CDS 2663827 2663954 2663827 ID=Msa0344080-mRNA-1:cds;Parent=Msa0344080-mRNA-1
chr3_1 CDS 2664922 2665276 2664922 ID=Msa0344080-mRNA-1:cds;Parent=Msa0344080-mRNA-1
chr3_1 CDS 2665382 2666047 2665382 ID=Msa0344080-mRNA-1:cds;Parent=Msa0344080-mRNA-1
chr3_1 three_prime_UTR 2666048 2666291 2666048 ID=Msa0344080-mRNA-1:three_prime_utr;Parent=Msa0344080-mRNA-1
Gene Sequence

>Msa0344080

ATGCAACTGTGCGTTTCATGTAATCACTTCTTTTCATTCTCAAACCCTAACCTCTTCTTTCTCTCTCTTCTCTTCACTTGCGAGCGACCGAGATCCATTCTTCCCGAGCTCGGAAGTTGTAACATCAGGACAATGAGGAACATGAAGAGGAAAGACATTGGAGATAAAGGAGGTGTAAGACCAAAGGCTGAATGGGATGTCAATACAGTCAAATTGTATATCAAATTATGCCTTGATGAAGTCAAAAAGGGAGAACACAATGGAACAACCCTTACAAAGAAAGGCTGGAAATCTGTTTTATCCAACTTTAATGAGAAAACTGGGAAGGATTATGAAAATAAGCAATTAACAAACAAGTGGTATAATCTTAGGAGAGATTGGCAAGAATGGTATAAGTTGTTTGCTAAGGAGACACTTGTGGGACAAGATAGTGCAAAGAACGCTATAGATGCACCTGATGAGTGGTGGGAGAAAAAACAACTGGAAAATCCACCGTATGGAAAGTTTAGGCAAAAGGGACTTCCATTTTACATTGAATTAACTACTCTGTTCAAGGATATGGTCGATACTAGAAAGGTTGCATTGGTACCCTCTTCTGGGATACCACCTAATGGCATAGATGAAAATAACGATGTGTATCGCCTATGCTTTGAGAGTGGTGGTATAGATATCGGGGAAGGATACGGGGATACCGATTTATTGGGAGGTGCTATTGCTGGAGTTGGTGCTTATTTTCAAGATATAAATTTTAGCACATCCCGTGGAAATGATAGTGATGCGTGTAGCGTGAAGAGGCGAAGGGTTGGATCTTTTGATAGAACTGAGAAGAATAAAAATATCAAGGTTTCTGATGCAGAAAGGATAGCTGATGCATTGAGTAGAATTGCATCTGTGTGTGAGTCGCACACAGCTGCTATGAAGGCACTGATAGTACCTGGGACATCTATTCCTGAAGTGATTGCTGAGCTTAATTGCATGGAGGTCATTGGAAGCGATCTTGATTGGCATTCCCGATGTTGTCAGCTGATGTTGTTTAAGCCCGCGAGGGAAATGTTTGTAGCATTACAAGTACTGGGAAATGAGCAAAGCTTGTTGAATTGGCTTAAATATGCAGCATATACACCTCTGCCATTTATGAAAGTAGATTGA

Protein sequence

>Msa0344080

MQLCVSCNHFFSFSNPNLFFLSLLFTCERPRSILPELGSCNIRTMRNMKRKDIGDKGGVRPKAEWDVNTVKLYIKLCLDEVKKGEHNGTTLTKKGWKSVLSNFNEKTGKDYENKQLTNKWYNLRRDWQEWYKLFAKETLVGQDSAKNAIDAPDEWWEKKQLENPPYGKFRQKGLPFYIELTTLFKDMVDTRKVALVPSSGIPPNGIDENNDVYRLCFESGGIDIGEGYGDTDLLGGAIAGVGAYFQDINFSTSRGNDSDACSVKRRRVGSFDRTEKNKNIKVSDAERIADALSRIASVCESHTAAMKALIVPGTSIPEVIAELNCMEVIGSDLDWHSRCCQLMLFKPAREMFVALQVLGNEQSLLNWLKYAAYTPLPFMKVD*