Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204980 | PNX72202.1 | 74.412 | 340 | 78 | 2 | 42 | 380 | 1 | 332 | 2.02e-177 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204980 | sp|Q9FFJ8|LIMYB_ARATH | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 6.07e-15 | 79.3 |
| Msa0204980 | sp|Q9FFJ8|LIMYB_ARATH | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 3.67e-14 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204980 | A0A2K3NGN7 | 74.412 | 340 | 78 | 2 | 42 | 380 | 1 | 332 | 9.65e-178 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0204980 | 0.826037 | 3.378630e-54 | -8.615850e-47 |
| Msa0004860 | Msa0204980 | 0.820905 | 5.358271e-53 | -8.615850e-47 |
| Msa0004920 | Msa0204980 | 0.810121 | 1.349311e-50 | -8.615850e-47 |
| Msa0008410 | Msa0204980 | 0.821587 | 3.729793e-53 | -8.615850e-47 |
| Msa0017510 | Msa0204980 | 0.802625 | 5.133264e-49 | -8.615850e-47 |
| Msa0018620 | Msa0204980 | 0.808476 | 3.039223e-50 | -8.615850e-47 |
| Msa0031340 | Msa0204980 | 0.825934 | 3.574723e-54 | -8.615850e-47 |
| Msa0032260 | Msa0204980 | 0.823145 | 1.621343e-53 | -8.615850e-47 |
| Msa0040450 | Msa0204980 | 0.805477 | 1.310146e-49 | -8.615850e-47 |
| Msa0044020 | Msa0204980 | 0.831537 | 1.577805e-55 | -8.615850e-47 |
| Msa0051770 | Msa0204980 | 0.815089 | 1.104963e-51 | -8.615850e-47 |
| Msa0057140 | Msa0204980 | 0.818158 | 2.267690e-52 | -8.615850e-47 |
| Msa0064350 | Msa0204980 | 0.838114 | 3.484942e-57 | -8.615850e-47 |
| Msa0067620 | Msa0204980 | 0.814892 | 1.222479e-51 | -8.615850e-47 |
| Msa0073670 | Msa0204980 | 0.806864 | 6.686401e-50 | -8.615850e-47 |
| Msa0076000 | Msa0204980 | 0.838632 | 2.563045e-57 | -8.615850e-47 |
| Msa0078650 | Msa0204980 | 0.812390 | 4.343471e-51 | -8.615850e-47 |
| Msa0082280 | Msa0204980 | 0.808470 | 3.049105e-50 | -8.615850e-47 |
| Msa0090590 | Msa0204980 | 0.813439 | 2.558144e-51 | -8.615850e-47 |
| Msa0094120 | Msa0204980 | 0.813672 | 2.273718e-51 | -8.615850e-47 |
| Msa0110970 | Msa0204980 | 0.808314 | 3.292099e-50 | -8.615850e-47 |
| Msa0113970 | Msa0204980 | 0.810916 | 9.087231e-51 | -8.615850e-47 |
| Msa0124340 | Msa0204980 | 0.808113 | 3.633115e-50 | -8.615850e-47 |
| Msa0127310 | Msa0204980 | 0.820277 | 7.468310e-53 | -8.615850e-47 |
| Msa0129060 | Msa0204980 | 0.814763 | 1.305734e-51 | -8.615850e-47 |
| Msa0142950 | Msa0204980 | 0.818636 | 1.767780e-52 | -8.615850e-47 |
| Msa0146260 | Msa0204980 | 0.801818 | 7.525278e-49 | -8.615850e-47 |
| Msa0148100 | Msa0204980 | 0.820089 | 8.245082e-53 | -8.615850e-47 |
| Msa0157290 | Msa0204980 | 0.802484 | 5.490117e-49 | -8.615850e-47 |
| Msa0170570 | Msa0204980 | 0.815613 | 8.452037e-52 | -8.615850e-47 |
| Msa0171290 | Msa0204980 | 0.841767 | 3.891338e-58 | -8.615850e-47 |
| Msa0174770 | Msa0204980 | 0.809119 | 2.215254e-50 | -8.615850e-47 |
| Msa0181610 | Msa0204980 | 0.802465 | 5.537904e-49 | -8.615850e-47 |
| Msa0183050 | Msa0204980 | 0.806775 | 6.983125e-50 | -8.615850e-47 |
| Msa0183830 | Msa0204980 | 0.813745 | 2.190574e-51 | -8.615850e-47 |
| Msa0183900 | Msa0204980 | 0.801762 | 7.726018e-49 | -8.615850e-47 |
| Msa0184960 | Msa0204980 | 0.811255 | 7.673321e-51 | -8.615850e-47 |
| Msa0186890 | Msa0204980 | 0.842901 | 1.948252e-58 | -8.615850e-47 |
| Msa0187930 | Msa0204980 | 0.817023 | 4.088284e-52 | -8.615850e-47 |
| Msa0191050 | Msa0204980 | 0.824027 | 1.008386e-53 | -8.615850e-47 |
| Msa0194540 | Msa0204980 | 0.820803 | 5.655250e-53 | -8.615850e-47 |
| Msa0195630 | Msa0204980 | 0.814714 | 1.338275e-51 | -8.615850e-47 |
| Msa0197930 | Msa0204980 | 0.808974 | 2.378962e-50 | -8.615850e-47 |
| Msa0199880 | Msa0204980 | 0.801112 | 1.049761e-48 | -8.615850e-47 |
| Msa0204980 | Msa0205850 | 0.820734 | 5.864854e-53 | -8.615850e-47 |
| Msa0204980 | Msa0216240 | 0.817659 | 2.939802e-52 | -8.615850e-47 |
| Msa0204980 | Msa0225740 | 0.819607 | 1.062828e-52 | -8.615850e-47 |
| Msa0204980 | Msa0227400 | 0.811297 | 7.513567e-51 | -8.615850e-47 |
| Msa0204980 | Msa0231880 | 0.831886 | 1.294739e-55 | -8.615850e-47 |
| Msa0204980 | Msa0233350 | 0.831535 | 1.579652e-55 | -8.615850e-47 |
| Msa0204980 | Msa0237410 | 0.816859 | 4.449361e-52 | -8.615850e-47 |
| Msa0204980 | Msa0239570 | 0.802951 | 4.396724e-49 | -8.615850e-47 |
| Msa0204980 | Msa0242230 | 0.809688 | 1.671810e-50 | -8.615850e-47 |
| Msa0204980 | Msa0242410 | 0.801461 | 8.908444e-49 | -8.615850e-47 |
| Msa0204980 | Msa0244780 | 0.810313 | 1.226825e-50 | -8.615850e-47 |
| Msa0204980 | Msa0262310 | 0.802996 | 4.303196e-49 | -8.615850e-47 |
| Msa0204980 | Msa0264150 | 0.824230 | 9.034183e-54 | -8.615850e-47 |
| Msa0204980 | Msa0267970 | 0.810186 | 1.306377e-50 | -8.615850e-47 |
| Msa0204980 | Msa0268130 | 0.823749 | 1.171669e-53 | -8.615850e-47 |
| Msa0204980 | Msa0271810 | 0.824481 | 7.883731e-54 | -8.615850e-47 |
| Msa0204980 | Msa0283520 | 0.808410 | 3.139452e-50 | -8.615850e-47 |
| Msa0204980 | Msa0287650 | 0.837694 | 4.467726e-57 | -8.615850e-47 |
| Msa0204980 | Msa0291500 | 0.812533 | 4.041812e-51 | -8.615850e-47 |
| Msa0204980 | Msa0298990 | 0.815773 | 7.786693e-52 | -8.615850e-47 |
| Msa0204980 | Msa0300090 | 0.803305 | 3.714690e-49 | -8.615850e-47 |
| Msa0204980 | Msa0311700 | 0.836011 | 1.201306e-56 | -8.615850e-47 |
| Msa0204980 | Msa0320550 | 0.842557 | 2.404010e-58 | -8.615850e-47 |
| Msa0204980 | Msa0329350 | 0.831492 | 1.619340e-55 | -8.615850e-47 |
| Msa0204980 | Msa0332000 | 0.802498 | 5.452301e-49 | -8.615850e-47 |
| Msa0204980 | Msa0334040 | 0.806739 | 7.106304e-50 | -8.615850e-47 |
| Msa0204980 | Msa0343810 | 0.801272 | 9.739082e-49 | -8.615850e-47 |
| Msa0204980 | Msa0344080 | 0.841124 | 5.747772e-58 | -8.615850e-47 |
| Msa0204980 | Msa0355270 | 0.832504 | 9.101908e-56 | -8.615850e-47 |
| Msa0204980 | Msa0369450 | 0.816272 | 6.023203e-52 | -8.615850e-47 |
| Msa0204980 | Msa0376690 | 0.803199 | 3.906981e-49 | -8.615850e-47 |
| Msa0204980 | Msa0387730 | 0.804954 | 1.685519e-49 | -8.615850e-47 |
| Msa0204980 | Msa0402330 | 0.831949 | 1.249181e-55 | -8.615850e-47 |
| Msa0204980 | Msa0469030 | 0.805739 | 1.154432e-49 | -8.615850e-47 |
| Msa0204980 | Msa0484780 | 0.800412 | 1.458874e-48 | -8.615850e-47 |
| Msa0204980 | Msa0485120 | 0.800375 | 1.484185e-48 | -8.615850e-47 |
| Msa0204980 | Msa0507680 | 0.806591 | 7.636601e-50 | -8.615850e-47 |
| Msa0204980 | Msa0524500 | 0.805693 | 1.180402e-49 | -8.615850e-47 |
| Msa0204980 | Msa0541860 | 0.839834 | 1.250352e-57 | -8.615850e-47 |
| Msa0204980 | Msa0546360 | 0.802767 | 4.797891e-49 | -8.615850e-47 |
| Msa0204980 | Msa0547720 | 0.806522 | 7.895928e-50 | -8.615850e-47 |
| Msa0204980 | Msa0552810 | 0.837407 | 5.292229e-57 | -8.615850e-47 |
| Msa0204980 | Msa0558810 | 0.816372 | 5.721461e-52 | -8.615850e-47 |
| Msa0204980 | Msa0566310 | 0.801968 | 7.010060e-49 | -8.615850e-47 |
| Msa0204980 | Msa0568820 | 0.810532 | 1.100194e-50 | -8.615850e-47 |
| Msa0204980 | Msa0581070 | 0.828693 | 7.801793e-55 | -8.615850e-47 |
| Msa0204980 | Msa0585960 | 0.808836 | 2.546050e-50 | -8.615850e-47 |
| Msa0204980 | Msa0600600 | 0.805391 | 1.365747e-49 | -8.615850e-47 |
| Msa0204980 | Msa0612960 | 0.814064 | 1.862961e-51 | -8.615850e-47 |
| Msa0204980 | Msa0616020 | 0.800966 | 1.124523e-48 | -8.615850e-47 |
| Msa0204980 | Msa0619070 | 0.804371 | 2.230646e-49 | -8.615850e-47 |
| Msa0204980 | Msa0620240 | 0.800236 | 1.584310e-48 | -8.615850e-47 |
| Msa0204980 | Msa0623700 | 0.819582 | 1.076619e-52 | -8.615850e-47 |
| Msa0204980 | Msa0631120 | 0.804131 | 2.503350e-49 | -8.615850e-47 |
| Msa0204980 | Msa0638070 | 0.809772 | 1.604103e-50 | -8.615850e-47 |
| Msa0204980 | Msa0662500 | 0.802011 | 6.868444e-49 | -8.615850e-47 |
| Msa0204980 | Msa0663900 | 0.815177 | 1.056623e-51 | -8.615850e-47 |
| Msa0204980 | Msa0667050 | 0.800029 | 1.745962e-48 | -8.615850e-47 |
| Msa0204980 | Msa0669340 | 0.803458 | 3.452458e-49 | -8.615850e-47 |
| Msa0204980 | Msa0680240 | 0.813118 | 3.008869e-51 | -8.615850e-47 |
| Msa0204980 | Msa0684500 | 0.810632 | 1.046427e-50 | -8.615850e-47 |
| Msa0204980 | Msa0687630 | 0.829290 | 5.592067e-55 | -8.615850e-47 |
| Msa0204980 | Msa0690160 | 0.808036 | 3.771867e-50 | -8.615850e-47 |
| Msa0204980 | Msa0691900 | 0.802738 | 4.865855e-49 | -8.615850e-47 |
| Msa0204980 | Msa0692840 | 0.822929 | 1.820849e-53 | -8.615850e-47 |
| Msa0204980 | Msa0692940 | 0.813078 | 3.070777e-51 | -8.615850e-47 |
| Msa0204980 | Msa0696450 | 0.809426 | 1.903874e-50 | -8.615850e-47 |
| Msa0204980 | Msa0698660 | 0.803021 | 4.251988e-49 | -8.615850e-47 |
| Msa0204980 | Msa0703230 | 0.843439 | 1.400139e-58 | -8.615850e-47 |
| Msa0204980 | Msa0709500 | 0.800665 | 1.295605e-48 | -8.615850e-47 |
| Msa0204980 | Msa0713820 | 0.802544 | 5.335686e-49 | -8.615850e-47 |
| Msa0204980 | Msa0720820 | 0.816826 | 4.527494e-52 | -8.615850e-47 |
| Msa0204980 | Msa0730000 | 0.808580 | 2.887793e-50 | -8.615850e-47 |
| Msa0204980 | Msa0749760 | 0.813147 | 2.965136e-51 | -8.615850e-47 |
| Msa0204980 | Msa0750880 | 0.815095 | 1.101723e-51 | -8.615850e-47 |
| Msa0204980 | Msa0761940 | 0.824159 | 9.385596e-54 | -8.615850e-47 |
| Msa0204980 | Msa0763020 | 0.800421 | 1.452516e-48 | -8.615850e-47 |
| Msa0204980 | Msa0763070 | 0.811887 | 5.592063e-51 | -8.615850e-47 |
| Msa0204980 | Msa0803890 | 0.802913 | 4.475888e-49 | -8.615850e-47 |
| Msa0204980 | Msa0841940 | 0.822974 | 1.777377e-53 | -8.615850e-47 |
| Msa0204980 | Msa0850960 | 0.804821 | 1.796851e-49 | -8.615850e-47 |
| Msa0204980 | Msa0869100 | 0.820560 | 6.430339e-53 | -8.615850e-47 |
| Msa0204980 | Msa0876200 | 0.834161 | 3.516580e-56 | -8.615850e-47 |
| Msa0204980 | Msa0880140 | 0.805523 | 1.281476e-49 | -8.615850e-47 |
| Msa0204980 | Msa0880440 | 0.800886 | 1.168006e-48 | -8.615850e-47 |
| Msa0204980 | Msa0902760 | 0.807026 | 6.178617e-50 | -8.615850e-47 |
| Msa0204980 | Msa0933230 | 0.801164 | 1.024583e-48 | -8.615850e-47 |
| Msa0204980 | Msa0933310 | 0.807191 | 5.702738e-50 | -8.615850e-47 |
| Msa0204980 | Msa0967370 | 0.806706 | 7.222542e-50 | -8.615850e-47 |
| Msa0204980 | Msa0968590 | 0.831996 | 1.215620e-55 | -8.615850e-47 |
| Msa0204980 | Msa0970030 | 0.812610 | 3.888441e-51 | -8.615850e-47 |
| Msa0204980 | Msa0970520 | 0.810608 | 1.059142e-50 | -8.615850e-47 |
| Msa0204980 | Msa0971090 | 0.800637 | 1.312584e-48 | -8.615850e-47 |
| Msa0204980 | Msa1013040 | 0.811996 | 5.293630e-51 | -8.615850e-47 |
| Msa0204980 | Msa1013400 | 0.818342 | 2.060977e-52 | -8.615850e-47 |
| Msa0204980 | Msa1013770 | 0.807275 | 5.473651e-50 | -8.615850e-47 |
| Msa0204980 | Msa1040400 | 0.829317 | 5.507049e-55 | -8.615850e-47 |
| Msa0204980 | Msa1041210 | 0.800024 | 1.750085e-48 | -8.615850e-47 |
| Msa0204980 | Msa1063950 | 0.800582 | 1.347201e-48 | -8.615850e-47 |
| Msa0204980 | Msa1081150 | 0.825055 | 5.775833e-54 | -8.615850e-47 |
| Msa0204980 | Msa1083150 | 0.824333 | 8.541770e-54 | -8.615850e-47 |
| Msa0204980 | Msa1093530 | 0.805082 | 1.584828e-49 | -8.615850e-47 |
| Msa0204980 | Msa1097840 | 0.812445 | 4.225549e-51 | -8.615850e-47 |
| Msa0204980 | Msa1104140 | 0.800011 | 1.760435e-48 | -8.615850e-47 |
| Msa0204980 | Msa1121440 | 0.815776 | 7.772702e-52 | -8.615850e-47 |
| Msa0204980 | Msa1123380 | 0.810610 | 1.058186e-50 | -8.615850e-47 |
| Msa0204980 | Msa1126510 | 0.826878 | 2.130714e-54 | -8.615850e-47 |
| Msa0204980 | Msa1126770 | 0.834381 | 3.097959e-56 | -8.615850e-47 |
| Msa0204980 | Msa1127890 | 0.854776 | 9.828339e-62 | -8.615850e-47 |
| Msa0204980 | Msa1133000 | 0.800335 | 1.512300e-48 | -8.615850e-47 |
| Msa0204980 | Msa1134110 | 0.802478 | 5.504237e-49 | -8.615850e-47 |
| Msa0204980 | Msa1151910 | 0.801280 | 9.701210e-49 | -8.615850e-47 |
| Msa0204980 | Msa1165870 | 0.849484 | 3.139447e-60 | -8.615850e-47 |
| Msa0204980 | Msa1166860 | 0.806136 | 9.526016e-50 | -8.615850e-47 |
| Msa0204980 | Msa1168160 | 0.804117 | 2.519582e-49 | -8.615850e-47 |
| Msa0204980 | Msa1171360 | 0.801716 | 7.897176e-49 | -8.615850e-47 |
| Msa0204980 | Msa1184370 | 0.816666 | 4.917709e-52 | -8.615850e-47 |
| Msa0204980 | Msa1187840 | 0.804327 | 2.278755e-49 | -8.615850e-47 |
| Msa0204980 | Msa1201120 | 0.804874 | 1.751855e-49 | -8.615850e-47 |
| Msa0204980 | Msa1204250 | 0.816793 | 4.604945e-52 | -8.615850e-47 |
| Msa0204980 | Msa1207270 | 0.802097 | 6.594310e-49 | -8.615850e-47 |
| Msa0204980 | Msa1214890 | 0.831780 | 1.375002e-55 | -8.615850e-47 |
| Msa0204980 | Msa1218600 | 0.859406 | 4.230090e-63 | -8.615850e-47 |
| Msa0204980 | Msa1218960 | 0.805961 | 1.036812e-49 | -8.615850e-47 |
| Msa0204980 | Msa1227690 | 0.807975 | 3.887734e-50 | -8.615850e-47 |
| Msa0204980 | Msa1237940 | 0.803174 | 3.954127e-49 | -8.615850e-47 |
| Msa0204980 | Msa1254710 | 0.825705 | 4.051329e-54 | -8.615850e-47 |
| Msa0204980 | Msa1255040 | -0.818618 | 1.783997e-52 | -8.615850e-47 |
| Msa0204980 | Msa1256470 | 0.821162 | 4.673917e-53 | -8.615850e-47 |
| Msa0204980 | Msa1257510 | 0.801185 | 1.014417e-48 | -8.615850e-47 |
| Msa0204980 | Msa1275540 | 0.815700 | 8.082395e-52 | -8.615850e-47 |
| Msa0204980 | Msa1283170 | 0.806629 | 7.497427e-50 | -8.615850e-47 |
| Msa0204980 | Msa1292830 | 0.803859 | 2.850555e-49 | -8.615850e-47 |
| Msa0204980 | Msa1295110 | 0.802104 | 6.573647e-49 | -8.615850e-47 |
| Msa0204980 | Msa1304820 | 0.812540 | 4.027813e-51 | -8.615850e-47 |
| Msa0204980 | Msa1305710 | 0.809749 | 1.621991e-50 | -8.615850e-47 |
| Msa0204980 | Msa1307950 | 0.840153 | 1.032193e-57 | -8.615850e-47 |
| Msa0204980 | Msa1311960 | 0.800432 | 1.445412e-48 | -8.615850e-47 |
| Msa0204980 | Msa1316780 | 0.814791 | 1.287227e-51 | -8.615850e-47 |
| Msa0204980 | Msa1316830 | 0.822780 | 1.972237e-53 | -8.615850e-47 |
| Msa0204980 | Msa1331910 | 0.828739 | 7.602977e-55 | -8.615850e-47 |
| Msa0204980 | Msa1333110 | 0.816888 | 4.383218e-52 | -8.615850e-47 |
| Msa0204980 | Msa1353060 | 0.814211 | 1.729574e-51 | -8.615850e-47 |
| Msa0204980 | Msa1353980 | 0.813878 | 2.047990e-51 | -8.615850e-47 |
| Msa0204980 | Msa1356440 | 0.815033 | 1.137596e-51 | -8.615850e-47 |
| Msa0204980 | Msa1361400 | 0.800764 | 1.236937e-48 | -8.615850e-47 |
| Msa0204980 | Msa1361410 | 0.804790 | 1.824233e-49 | -8.615850e-47 |
| Msa0204980 | Msa1365150 | 0.809356 | 1.970462e-50 | -8.615850e-47 |
| Msa0204980 | Msa1366600 | 0.808705 | 2.716022e-50 | -8.615850e-47 |
| Msa0204980 | Msa1367880 | 0.825543 | 4.426342e-54 | -8.615850e-47 |
| Msa0204980 | Msa1370740 | 0.812966 | 3.249655e-51 | -8.615850e-47 |
| Msa0204980 | Msa1370860 | 0.807486 | 4.938300e-50 | -8.615850e-47 |
| Msa0204980 | Msa1374040 | 0.801115 | 1.048572e-48 | -8.615850e-47 |
| Msa0204980 | Msa1374120 | 0.800342 | 1.507337e-48 | -8.615850e-47 |
| Msa0204980 | Msa1385670 | 0.802189 | 6.313172e-49 | -8.615850e-47 |
| Msa0204980 | Msa1386230 | 0.801935 | 7.120823e-49 | -8.615850e-47 |
| Msa0204980 | Msa1394290 | 0.808567 | 2.907491e-50 | -8.615850e-47 |
| Msa0204980 | Msa1397810 | 0.819077 | 1.403445e-52 | -8.615850e-47 |
| Msa0204980 | Msa1404190 | 0.824295 | 8.721537e-54 | -8.615850e-47 |
| Msa0204980 | Msa1407460 | 0.816200 | 6.252578e-52 | -8.615850e-47 |
| Msa0204980 | Msa1409870 | 0.800553 | 1.365481e-48 | -8.615850e-47 |
| Msa0204980 | Msa1422580 | 0.819353 | 1.214400e-52 | -8.615850e-47 |
| Msa0204980 | Msa1443780 | 0.807924 | 3.984921e-50 | -8.615850e-47 |
| Msa0204980 | Msa1448690 | 0.814857 | 1.244576e-51 | -8.615850e-47 |
| Msa0204980 | Msa1460020 | 0.804206 | 2.414765e-49 | -8.615850e-47 |
| Msa0204980 | Msa1461280 | 0.832959 | 7.018716e-56 | -8.615850e-47 |
| Msa0204980 | Msa1465080 | 0.801480 | 8.826578e-49 | -8.615850e-47 |
| Msa0204980 | Msa1466300 | 0.801812 | 7.546736e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204980 | MtrunA17_Chr2g0295811 | 93.274 | 223 | 15 | 0 | 158 | 380 | 9 | 231 | 6.89e-153 | 430 |
| Msa0204980 | MtrunA17_Chr1g0172741 | 44.753 | 324 | 159 | 6 | 58 | 380 | 19 | 323 | 3.24e-90 | 274 |
| Msa0204980 | MtrunA17_Chr2g0285481 | 44.753 | 324 | 159 | 6 | 58 | 380 | 19 | 323 | 1.22e-89 | 273 |
| Msa0204980 | MtrunA17_Chr8g0334551 | 45.092 | 326 | 160 | 7 | 60 | 381 | 20 | 330 | 2.11e-85 | 262 |
| Msa0204980 | MtrunA17_Chr2g0321391 | 44.656 | 262 | 126 | 5 | 119 | 380 | 3 | 245 | 6.14e-68 | 214 |
| Msa0204980 | MtrunA17_Chr5g0422701 | 43.379 | 219 | 105 | 5 | 162 | 380 | 14 | 213 | 7.19e-49 | 164 |
| Msa0204980 | MtrunA17_Chr8g0362511 | 24.684 | 316 | 209 | 6 | 62 | 370 | 68 | 361 | 6.16e-26 | 107 |
| Msa0204980 | MtrunA17_Chr2g0295611 | 53.535 | 99 | 38 | 2 | 140 | 235 | 1 | 94 | 1.84e-25 | 99.0 |
| Msa0204980 | MtrunA17_Chr5g0402821 | 25.472 | 318 | 215 | 7 | 62 | 370 | 16 | 320 | 7.54e-23 | 97.8 |
| Msa0204980 | MtrunA17_Chr5g0422691 | 44.706 | 85 | 46 | 1 | 58 | 141 | 19 | 103 | 2.96e-20 | 85.1 |
| Msa0204980 | MtrunA17_Chr3g0113081 | 33.094 | 139 | 92 | 1 | 61 | 199 | 184 | 321 | 5.77e-18 | 85.9 |
| Msa0204980 | MtrunA17_Chr3g0113081 | 34.884 | 129 | 83 | 1 | 62 | 190 | 383 | 510 | 3.90e-16 | 80.1 |
| Msa0204980 | MtrunA17_Chr3g0113081 | 33.333 | 123 | 81 | 1 | 62 | 184 | 8 | 129 | 7.08e-14 | 73.2 |
| Msa0204980 | MtrunA17_Chr6g0469501 | 50.820 | 61 | 28 | 1 | 320 | 380 | 1 | 59 | 1.39e-16 | 73.6 |
| Msa0204980 | MtrunA17_Chr5g0405761 | 26.901 | 171 | 122 | 2 | 18 | 186 | 4 | 173 | 4.62e-12 | 66.6 |
| Msa0204980 | MtrunA17_Chr1g0176881 | 28.800 | 125 | 88 | 1 | 62 | 186 | 193 | 316 | 8.99e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204980 | AT5G05800.1 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 6.17e-16 | 79.3 |
| Msa0204980 | AT5G05800.1 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 3.73e-15 | 77.0 |
| Msa0204980 | AT5G05800.5 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 6.17e-16 | 79.3 |
| Msa0204980 | AT5G05800.5 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 3.73e-15 | 77.0 |
| Msa0204980 | AT5G05800.3 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 6.17e-16 | 79.3 |
| Msa0204980 | AT5G05800.3 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 3.73e-15 | 77.0 |
| Msa0204980 | AT5G05800.2 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 6.17e-16 | 79.3 |
| Msa0204980 | AT5G05800.2 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 3.73e-15 | 77.0 |
| Msa0204980 | AT5G05800.4 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 6.17e-16 | 79.3 |
| Msa0204980 | AT5G05800.4 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 3.73e-15 | 77.0 |
| Msa0204980 | AT3G11290.2 | 29.545 | 132 | 92 | 1 | 62 | 193 | 165 | 295 | 2.40e-13 | 71.6 |
| Msa0204980 | AT3G11290.1 | 29.545 | 132 | 92 | 1 | 62 | 193 | 165 | 295 | 2.40e-13 | 71.6 |
| Msa0204980 | AT3G11310.1 | 31.250 | 144 | 91 | 3 | 60 | 197 | 171 | 312 | 1.36e-11 | 66.2 |
Find 106 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCATTGGTACCCTCTTC+TGG | 0.207423 | 2_1:+30986103 | Msa0204980:CDS |
| GATCAATCTACTTTCATAAA+TGG | 0.225444 | 2_1:-30986655 | None:intergenic |
| CGTTCCCTCAGAATCACTTT+TGG | 0.268153 | 2_1:+30984432 | Msa0204980:five_prime_UTR |
| AGGAAAGACATTGGAGATAA+AGG | 0.272766 | 2_1:+30985590 | Msa0204980:CDS |
| TCCAACTTTAATGAGAAAAC+TGG | 0.275778 | 2_1:+30985743 | Msa0204980:CDS |
| ATACGGGGATACCGATTTAT+TGG | 0.288403 | 2_1:+30986207 | Msa0204980:CDS |
| ATGCCTTGATGAAGTCAAAA+AGG | 0.298025 | 2_1:+30985670 | Msa0204980:CDS |
| CAAACAAGTGGTATAATCTT+AGG | 0.300026 | 2_1:+30985792 | Msa0204980:CDS |
| ATTGAATTGGTTAAACCATT+AGG | 0.306101 | 2_1:+30986816 | Msa0204980:three_prime_UTR |
| TTGACATCCCATTCAGCCTT+TGG | 0.309578 | 2_1:-30985623 | None:intergenic |
| ATGAGCAAAGCTTGTTGAAT+TGG | 0.320958 | 2_1:+30986605 | Msa0204980:CDS |
| GTAGTTAATTCAATGTAAAA+TGG | 0.325846 | 2_1:-30986049 | None:intergenic |
| AACTACTCTGTTCAAGGATA+TGG | 0.339439 | 2_1:+30986066 | Msa0204980:CDS |
| AGAGAGAGAAAGAAGAGGTT+AGG | 0.340973 | 2_1:-30984522 | None:intergenic |
| TTAGTTTCTTTCTTATGTAT+TGG | 0.344398 | 2_1:+30986738 | Msa0204980:three_prime_UTR |
| ATTTCCAGCCTTTCTTTGTA+AGG | 0.360922 | 2_1:-30985712 | None:intergenic |
| TTTGACAATGTTGATTGAAT+TGG | 0.365985 | 2_1:+30986803 | Msa0204980:three_prime_UTR |
| GAGAGTGGTGGTATAGATAT+CGG | 0.367630 | 2_1:+30986178 | Msa0204980:CDS |
| TTATTGGGAGGTGCTATTGC+TGG | 0.381064 | 2_1:+30986223 | Msa0204980:CDS |
| CTTAATTGCATGGAGGTCAT+TGG | 0.389948 | 2_1:+30986493 | Msa0204980:CDS |
| GAGAGAGAAAGAAGAGGTTA+GGG | 0.394401 | 2_1:-30984521 | None:intergenic |
| GTTTGTAGCATTACAAGTAC+TGG | 0.394698 | 2_1:+30986579 | Msa0204980:CDS |
| TTAAGCTCAGCAATCACTTC+AGG | 0.402179 | 2_1:-30986475 | None:intergenic |
| AGAGTGGTGGTATAGATATC+GGG | 0.408274 | 2_1:+30986179 | Msa0204980:CDS |
| ATGCAGGAAAATCCACAGTA+TGG | 0.412724 | 2_1:+30986004 | Msa0204980:intron |
| TTGCATTGGTACCCTCTTCT+GGG | 0.417526 | 2_1:+30986104 | Msa0204980:CDS |
| TAGATATCGGGGAAGGATAC+GGG | 0.418824 | 2_1:+30986191 | Msa0204980:CDS |
| TGAATTAACTACTCTGTTCA+AGG | 0.421835 | 2_1:+30986060 | Msa0204980:CDS |
| TCATTGGAAGCGATCTTGAT+TGG | 0.423771 | 2_1:+30986509 | Msa0204980:CDS |
| GTATGGAAAGTTTAGGCAAA+AGG | 0.426389 | 2_1:+30986021 | Msa0204980:CDS |
| TACGGGGATACCGATTTATT+GGG | 0.430242 | 2_1:+30986208 | Msa0204980:CDS |
| AGATCCATTCTTCCCGAGCT+TGG | 0.433570 | 2_1:+30984567 | Msa0204980:CDS |
| GGTATAATCTTAGGAGAGAT+TGG | 0.437960 | 2_1:+30985801 | Msa0204980:CDS |
| ATAGATATCGGGGAAGGATA+CGG | 0.443209 | 2_1:+30986190 | Msa0204980:CDS |
| AGCAAACTTGCAGAACCTAA+TGG | 0.449923 | 2_1:-30986831 | None:intergenic |
| CAACATCAGCTGACAACATC+GGG | 0.459096 | 2_1:-30986536 | None:intergenic |
| ACTTCCAAGCTCGGGAAGAA+TGG | 0.462850 | 2_1:-30984571 | None:intergenic |
| GTGTAAGACCAAAGGCTGAA+TGG | 0.473181 | 2_1:+30985615 | Msa0204980:CDS |
| ATCCACAGTATGGAAAGTTT+AGG | 0.475941 | 2_1:+30986014 | Msa0204980:CDS |
| AATAGCACCTCCCAATAAAT+CGG | 0.477242 | 2_1:-30986218 | None:intergenic |
| TTTCCAGCCTTTCTTTGTAA+GGG | 0.482225 | 2_1:-30985711 | None:intergenic |
| TGTAAGACCAAAGGCTGAAT+GGG | 0.486012 | 2_1:+30985616 | Msa0204980:CDS |
| AGCAAACACATAAGCTTAAG+TGG | 0.494403 | 2_1:-30986773 | None:intergenic |
| GGAGGTGCTATTGCTGGAGT+TGG | 0.495766 | 2_1:+30986229 | Msa0204980:CDS |
| TCTTCTGGGATACCACCTAA+TGG | 0.496004 | 2_1:+30986118 | Msa0204980:CDS |
| ATGGTATAAGTTGTTTGCTA+AGG | 0.498533 | 2_1:+30985829 | Msa0204980:CDS |
| TATGGAAAGTTTAGGCAAAA+GGG | 0.498956 | 2_1:+30986022 | Msa0204980:CDS |
| TTAGGAGAGATTGGCAAGAA+TGG | 0.506891 | 2_1:+30985810 | Msa0204980:CDS |
| AGCTTGGAAGTTGTAACATC+AGG | 0.507862 | 2_1:+30984583 | Msa0204980:CDS |
| TTTGCTAAGGAGACACTTGT+GGG | 0.512651 | 2_1:+30985842 | Msa0204980:CDS |
| GGAACAACCCTTACAAAGAA+AGG | 0.520070 | 2_1:+30985704 | Msa0204980:CDS |
| GTCGCACACAGCTGCTATGA+AGG | 0.526769 | 2_1:+30986426 | Msa0204980:CDS |
| TGCCTCCAAAAGTGATTCTG+AGG | 0.534987 | 2_1:-30984437 | None:intergenic |
| CAACCCTTACAAAGAAAGGC+TGG | 0.537841 | 2_1:+30985708 | Msa0204980:CDS |
| ATGTTACAACTTCCAAGCTC+GGG | 0.538024 | 2_1:-30984579 | None:intergenic |
| ATGAAGGCACTGATAGTACC+AGG | 0.543199 | 2_1:+30986442 | Msa0204980:CDS |
| CGCATCACTATCATTTCCAC+GGG | 0.547701 | 2_1:-30986284 | None:intergenic |
| GATGTTACAACTTCCAAGCT+CGG | 0.548516 | 2_1:-30984580 | None:intergenic |
| GTGATGCGTGTAGCGTGAAG+AGG | 0.550255 | 2_1:+30986299 | Msa0204980:CDS |
| GCTACAAACATTTCCCTCGC+GGG | 0.550949 | 2_1:-30986565 | None:intergenic |
| CCAACTTTAATGAGAAAACT+GGG | 0.556179 | 2_1:+30985744 | Msa0204980:CDS |
| TGCCTAAACTTTCCATACTG+TGG | 0.560996 | 2_1:-30986016 | None:intergenic |
| CGTGTAGCGTGAAGAGGCGA+AGG | 0.564658 | 2_1:+30986305 | Msa0204980:CDS |
| GATTGCTGAGCTTAATTGCA+TGG | 0.565046 | 2_1:+30986483 | Msa0204980:CDS |
| ACGCATCACTATCATTTCCA+CGG | 0.565136 | 2_1:-30986285 | None:intergenic |
| TCAAGGTTTCTGATGCAGAA+AGG | 0.566852 | 2_1:+30986365 | Msa0204980:CDS |
| TTTGTAGCATTACAAGTACT+GGG | 0.568955 | 2_1:+30986580 | Msa0204980:CDS |
| AACATGAAGAGGAAAGACAT+TGG | 0.569372 | 2_1:+30985581 | Msa0204980:CDS |
| GGATATGGTCGATACTAGAA+AGG | 0.569942 | 2_1:+30986081 | Msa0204980:CDS |
| TTGATTTCACGGTGGACTGG+AGG | 0.570075 | 2_1:-30984382 | None:intergenic |
| AGCGTGAAGAGGCGAAGGGT+TGG | 0.570317 | 2_1:+30986310 | Msa0204980:CDS |
| GGACAATGAGGAACATGAAG+AGG | 0.574669 | 2_1:+30985570 | Msa0204980:intron |
| GTTTGCTAAGGAGACACTTG+TGG | 0.579425 | 2_1:+30985841 | Msa0204980:CDS |
| CGATACTAGAAAGGTTGCAT+TGG | 0.580122 | 2_1:+30986090 | Msa0204980:CDS |
| ACATAAGAAAGAAACTAAGT+AGG | 0.580248 | 2_1:-30986733 | None:intergenic |
| GCCTCCAAAAGTGATTCTGA+GGG | 0.580392 | 2_1:-30984436 | None:intergenic |
| CGCCTATGCTTTGAGAGTGG+TGG | 0.580624 | 2_1:+30986166 | Msa0204980:CDS |
| TGATTTCACGGTGGACTGGA+GGG | 0.587302 | 2_1:-30984381 | None:intergenic |
| AGATATCGGGGAAGGATACG+GGG | 0.587830 | 2_1:+30986192 | Msa0204980:CDS |
| ACAACATCAGCTGACAACAT+CGG | 0.591838 | 2_1:-30986537 | None:intergenic |
| TTTGAGATTCTATCACAGCT+AGG | 0.591976 | 2_1:-30986855 | None:intergenic |
| AAAGACATTGGAGATAAAGG+AGG | 0.594640 | 2_1:+30985593 | Msa0204980:CDS |
| CTTTAATGAGAAAACTGGGA+AGG | 0.595599 | 2_1:+30985748 | Msa0204980:CDS |
| AGAGAAGAGAGAGAAAGAAG+AGG | 0.599037 | 2_1:-30984527 | None:intergenic |
| TGGTTTGCTTAAGGACAATG+AGG | 0.599503 | 2_1:+30985558 | Msa0204980:intron |
| ACTTCAGGAATAGATGTCCC+TGG | 0.605651 | 2_1:-30986460 | None:intergenic |
| TCTACTTTCATAAATGGCAG+AGG | 0.608958 | 2_1:-30986649 | None:intergenic |
| GGTGGTATAGATATCGGGGA+AGG | 0.608971 | 2_1:+30986184 | Msa0204980:CDS |
| AGCTCGGGAAGAATGGATCT+CGG | 0.609231 | 2_1:-30984564 | None:intergenic |
| ATAAGCAATTAACAAACAAG+TGG | 0.615520 | 2_1:+30985780 | Msa0204980:CDS |
| ATTAGGTGGTATCCCAGAAG+AGG | 0.626494 | 2_1:-30986116 | None:intergenic |
| GATGTTGTTTAAGCCCGCGA+GGG | 0.627996 | 2_1:+30986552 | Msa0204980:CDS |
| TAGATGCACCTGATGAGTGG+TGG | 0.638418 | 2_1:+30985888 | Msa0204980:CDS |
| GGGGATACCGATTTATTGGG+AGG | 0.641816 | 2_1:+30986211 | Msa0204980:CDS |
| AGATGCACCTGATGAGTGGT+GGG | 0.645494 | 2_1:+30985889 | Msa0204980:CDS |
| GAGTGGTGGTATAGATATCG+GGG | 0.648568 | 2_1:+30986180 | Msa0204980:CDS |
| TAAAGGAGGTGTAAGACCAA+AGG | 0.652942 | 2_1:+30985607 | Msa0204980:CDS |
| TGCTACAAACATTTCCCTCG+CGG | 0.656038 | 2_1:-30986566 | None:intergenic |
| TACCACCACTCTCAAAGCAT+AGG | 0.658988 | 2_1:-30986168 | None:intergenic |
| TTAGGTGGTATCCCAGAAGA+GGG | 0.662469 | 2_1:-30986115 | None:intergenic |
| CTATAGATGCACCTGATGAG+TGG | 0.677735 | 2_1:+30985885 | Msa0204980:CDS |
| TGATGTTGTTTAAGCCCGCG+AGG | 0.680542 | 2_1:+30986551 | Msa0204980:CDS |
| TATCGCCTATGCTTTGAGAG+TGG | 0.702750 | 2_1:+30986163 | Msa0204980:CDS |
| GTGTAGCGTGAAGAGGCGAA+GGG | 0.723526 | 2_1:+30986306 | Msa0204980:CDS |
| TGCTGAGCTTAATTGCATGG+AGG | 0.754574 | 2_1:+30986486 | Msa0204980:CDS |
| TGAAGGCACTGATAGTACCA+GGG | 0.761101 | 2_1:+30986443 | Msa0204980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTAAATTTGCA+TGG | + | chr2_1:30984728-30984747 | Msa0204980:intron | 10.0% |
| !!! | TGTTTTTTTTTTTGATTTCA+CGG | - | chr2_1:30984396-30984415 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACATAGTTGTT+TGG | + | chr2_1:30984404-30984423 | Msa0204980:five_prime_UTR | 15.0% |
| !! | AAAATGAATATAGAAAACTT+TGG | + | chr2_1:30985407-30985426 | Msa0204980:intron | 15.0% |
| !! | TATATTAAATATGTTACCTA+AGG | + | chr2_1:30985523-30985542 | Msa0204980:intron | 15.0% |
| !!! | TCTATAAAGTTAAACTGTTT+TGG | - | chr2_1:30984959-30984978 | None:intergenic | 20.0% |
| !!! | AATAAGTATTGTATTCCATT+CGG | + | chr2_1:30985026-30985045 | Msa0204980:intron | 20.0% |
| !!! | TCAAATAAAGTTGATGTATT+TGG | + | chr2_1:30985072-30985091 | Msa0204980:intron | 20.0% |
| !!! | CTTGGTTTATTTTCAATATA+AGG | - | chr2_1:30985444-30985463 | None:intergenic | 20.0% |
| !! | GTAGTTAATTCAATGTAAAA+TGG | - | chr2_1:30986052-30986071 | None:intergenic | 20.0% |
| !! | TGAGAAGAATAAAAATATCA+AGG | + | chr2_1:30986348-30986367 | Msa0204980:CDS | 20.0% |
| !! | TTAGTTTCTTTCTTATGTAT+TGG | + | chr2_1:30986738-30986757 | Msa0204980:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTTGATTTCACGG+TGG | - | chr2_1:30984393-30984412 | None:intergenic | 25.0% |
| ! | AAAAACATAGTTGTTTGGTT+TGG | + | chr2_1:30984409-30984428 | Msa0204980:five_prime_UTR | 25.0% |
| ! | TTTGCAACATCAACATTATT+AGG | + | chr2_1:30984634-30984653 | Msa0204980:intron | 25.0% |
| !!! | ATCAGTAAGAGTATTATTCT+AGG | + | chr2_1:30984694-30984713 | Msa0204980:intron | 25.0% |
| !! | TAAAATCGATTTCCTTCAAA+AGG | + | chr2_1:30984753-30984772 | Msa0204980:intron | 25.0% |
| !! | AAAATCGATTTCCTTCAAAA+GGG | + | chr2_1:30984754-30984773 | Msa0204980:intron | 25.0% |
| ! | TCAAATAATCCAATTCAAAG+AGG | - | chr2_1:30984799-30984818 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTTAGACTGTT+TGG | + | chr2_1:30984833-30984852 | Msa0204980:intron | 25.0% |
| !!! | TAAGTTTTGTTAGACTGTTT+GGG | + | chr2_1:30984834-30984853 | Msa0204980:intron | 25.0% |
| !!! | CCTATTTTTGCTTATGATTA+GGG | - | chr2_1:30985052-30985071 | None:intergenic | 25.0% |
| !!! | ACCTATTTTTGCTTATGATT+AGG | - | chr2_1:30985053-30985072 | None:intergenic | 25.0% |
| ! | TTCAGAAACAATGAAAACAA+TGG | + | chr2_1:30985275-30985294 | Msa0204980:intron | 25.0% |
| !!! | AATTTCTGAAATGCTAGATT+TGG | + | chr2_1:30985313-30985332 | Msa0204980:intron | 25.0% |
| ! | TAATTGTCTACTAAATGACT+TGG | - | chr2_1:30985462-30985481 | None:intergenic | 25.0% |
| ! | ATAAGCAATTAACAAACAAG+TGG | + | chr2_1:30985780-30985799 | Msa0204980:CDS | 25.0% |
| !!! | TGATTAGTTTATAAACATGC+AGG | + | chr2_1:30985988-30986007 | Msa0204980:intron | 25.0% |
| !! | TTATTTTCATCTATGCCATT+AGG | - | chr2_1:30986136-30986155 | None:intergenic | 25.0% |
| ! | GATCAATCTACTTTCATAAA+TGG | - | chr2_1:30986658-30986677 | None:intergenic | 25.0% |
| ! | ACATAAGAAAGAAACTAAGT+AGG | - | chr2_1:30986736-30986755 | None:intergenic | 25.0% |
| !! | TTTGACAATGTTGATTGAAT+TGG | + | chr2_1:30986803-30986822 | Msa0204980:three_prime_UTR | 25.0% |
| ! | ATTGAATTGGTTAAACCATT+AGG | + | chr2_1:30986816-30986835 | Msa0204980:three_prime_UTR | 25.0% |
| GGAATACAATACTTATTGCT+TGG | - | chr2_1:30985023-30985042 | None:intergenic | 30.0% | |
| CCCTAATCATAAGCAAAAAT+AGG | + | chr2_1:30985049-30985068 | Msa0204980:intron | 30.0% | |
| !! | GATGTATTTGGCTCAAATTT+TGG | + | chr2_1:30985084-30985103 | Msa0204980:intron | 30.0% |
| ! | TCAACGAAAATTGAGGTATT+TGG | - | chr2_1:30985111-30985130 | None:intergenic | 30.0% |
| TAATTGGTCAACGAAAATTG+AGG | - | chr2_1:30985118-30985137 | None:intergenic | 30.0% | |
| ! | TCAATTTTCGTTGACCAATT+AGG | + | chr2_1:30985117-30985136 | Msa0204980:intron | 30.0% |
| ! | CAATTTTCGTTGACCAATTA+GGG | + | chr2_1:30985118-30985137 | Msa0204980:intron | 30.0% |
| CAATTGTGATAGAGAGAATA+TGG | + | chr2_1:30985228-30985247 | Msa0204980:intron | 30.0% | |
| ! | TATTTTTCTTTCTTGCACCA+AGG | + | chr2_1:30985480-30985499 | Msa0204980:intron | 30.0% |
| !!! | TGCTTATTTTGGTTTGCTTA+AGG | + | chr2_1:30985549-30985568 | Msa0204980:intron | 30.0% |
| TCCAACTTTAATGAGAAAAC+TGG | + | chr2_1:30985743-30985762 | Msa0204980:CDS | 30.0% | |
| CCAACTTTAATGAGAAAACT+GGG | + | chr2_1:30985744-30985763 | Msa0204980:CDS | 30.0% | |
| CAAACAAGTGGTATAATCTT+AGG | + | chr2_1:30985792-30985811 | Msa0204980:CDS | 30.0% | |
| ! | ATGGTATAAGTTGTTTGCTA+AGG | + | chr2_1:30985829-30985848 | Msa0204980:CDS | 30.0% |
| TATGGAAAGTTTAGGCAAAA+GGG | + | chr2_1:30986022-30986041 | Msa0204980:CDS | 30.0% | |
| TGAATTAACTACTCTGTTCA+AGG | + | chr2_1:30986060-30986079 | Msa0204980:CDS | 30.0% | |
| TTTGTAGCATTACAAGTACT+GGG | + | chr2_1:30986580-30986599 | Msa0204980:CDS | 30.0% | |
| GTTGCAAAAATGAAGAGACA+GGG | - | chr2_1:30984622-30984641 | None:intergenic | 35.0% | |
| TGTTGCAAAAATGAAGAGAC+AGG | - | chr2_1:30984623-30984642 | None:intergenic | 35.0% | |
| ATCAAGCAAAAAGACAACCT+TGG | - | chr2_1:30985500-30985519 | None:intergenic | 35.0% | |
| ! | ACCTAAGGACATGCTTATTT+TGG | + | chr2_1:30985538-30985557 | Msa0204980:intron | 35.0% |
| ACCAAAATAAGCATGTCCTT+AGG | - | chr2_1:30985542-30985561 | None:intergenic | 35.0% | |
| AACATGAAGAGGAAAGACAT+TGG | + | chr2_1:30985581-30985600 | Msa0204980:CDS | 35.0% | |
| AGGAAAGACATTGGAGATAA+AGG | + | chr2_1:30985590-30985609 | Msa0204980:CDS | 35.0% | |
| AAAGACATTGGAGATAAAGG+AGG | + | chr2_1:30985593-30985612 | Msa0204980:CDS | 35.0% | |
| ATGCCTTGATGAAGTCAAAA+AGG | + | chr2_1:30985670-30985689 | Msa0204980:CDS | 35.0% | |
| TGCCTTGATGAAGTCAAAAA+GGG | + | chr2_1:30985671-30985690 | Msa0204980:CDS | 35.0% | |
| TTTCCAGCCTTTCTTTGTAA+GGG | - | chr2_1:30985714-30985733 | None:intergenic | 35.0% | |
| ATTTCCAGCCTTTCTTTGTA+AGG | - | chr2_1:30985715-30985734 | None:intergenic | 35.0% | |
| ! | CCCAGTTTTCTCATTAAAGT+TGG | - | chr2_1:30985747-30985766 | None:intergenic | 35.0% |
| CTTTAATGAGAAAACTGGGA+AGG | + | chr2_1:30985748-30985767 | Msa0204980:CDS | 35.0% | |
| GGTATAATCTTAGGAGAGAT+TGG | + | chr2_1:30985801-30985820 | Msa0204980:CDS | 35.0% | |
| ATCCACAGTATGGAAAGTTT+AGG | + | chr2_1:30986014-30986033 | Msa0204980:CDS | 35.0% | |
| GTATGGAAAGTTTAGGCAAA+AGG | + | chr2_1:30986021-30986040 | Msa0204980:CDS | 35.0% | |
| AACTACTCTGTTCAAGGATA+TGG | + | chr2_1:30986066-30986085 | Msa0204980:CDS | 35.0% | |
| ! | TTTTCATCTATGCCATTAGG+TGG | - | chr2_1:30986133-30986152 | None:intergenic | 35.0% |
| AATAGCACCTCCCAATAAAT+CGG | - | chr2_1:30986221-30986240 | None:intergenic | 35.0% | |
| !! | ATAAATTTTAGCACATCCCG+TGG | + | chr2_1:30986268-30986287 | Msa0204980:CDS | 35.0% |
| GTTTGTAGCATTACAAGTAC+TGG | + | chr2_1:30986579-30986598 | Msa0204980:CDS | 35.0% | |
| !! | ATGAGCAAAGCTTGTTGAAT+TGG | + | chr2_1:30986605-30986624 | Msa0204980:CDS | 35.0% |
| TCTACTTTCATAAATGGCAG+AGG | - | chr2_1:30986652-30986671 | None:intergenic | 35.0% | |
| !!! | TTTTAGAGTGCTTTTGCGTT+AGG | + | chr2_1:30986694-30986713 | Msa0204980:three_prime_UTR | 35.0% |
| !! | CGTTAGGCTAAAGCATTTTA+TGG | + | chr2_1:30986710-30986729 | Msa0204980:three_prime_UTR | 35.0% |
| AGCAAACACATAAGCTTAAG+TGG | - | chr2_1:30986776-30986795 | None:intergenic | 35.0% | |
| ! | TTTGAGATTCTATCACAGCT+AGG | - | chr2_1:30986858-30986877 | None:intergenic | 35.0% |
| !!! | TTTTTGATTTCACGGTGGAC+TGG | - | chr2_1:30984388-30984407 | None:intergenic | 40.0% |
| GAGAGAGAAAGAAGAGGTTA+GGG | - | chr2_1:30984524-30984543 | None:intergenic | 40.0% | |
| AGAGAGAGAAAGAAGAGGTT+AGG | - | chr2_1:30984525-30984544 | None:intergenic | 40.0% | |
| AGAGAAGAGAGAGAAAGAAG+AGG | - | chr2_1:30984530-30984549 | None:intergenic | 40.0% | |
| ATGTTACAACTTCCAAGCTC+GGG | - | chr2_1:30984582-30984601 | None:intergenic | 40.0% | |
| GATGTTACAACTTCCAAGCT+CGG | - | chr2_1:30984583-30984602 | None:intergenic | 40.0% | |
| AGCTTGGAAGTTGTAACATC+AGG | + | chr2_1:30984583-30984602 | Msa0204980:CDS | 40.0% | |
| ATGAAGAGACAGGGAAGAAA+AGG | - | chr2_1:30984613-30984632 | None:intergenic | 40.0% | |
| ! | CAATCAAGAAGCCCTTTTGA+AGG | - | chr2_1:30984768-30984787 | None:intergenic | 40.0% |
| AAGGGCTTCTTGATTGCTTA+AGG | + | chr2_1:30984772-30984791 | Msa0204980:intron | 40.0% | |
| AGGGCTTCTTGATTGCTTAA+GGG | + | chr2_1:30984773-30984792 | Msa0204980:intron | 40.0% | |
| TATCATACCCTGTCCCTAAT+TGG | - | chr2_1:30985134-30985153 | None:intergenic | 40.0% | |
| !! | TGGTTTGCTTAAGGACAATG+AGG | + | chr2_1:30985558-30985577 | Msa0204980:intron | 40.0% |
| ! | TAAAGGAGGTGTAAGACCAA+AGG | + | chr2_1:30985607-30985626 | Msa0204980:CDS | 40.0% |
| TGTAAGACCAAAGGCTGAAT+GGG | + | chr2_1:30985616-30985635 | Msa0204980:CDS | 40.0% | |
| !!! | CTCCCTTTTTGACTTCATCA+AGG | - | chr2_1:30985676-30985695 | None:intergenic | 40.0% |
| GTCAAAAAGGGAGAACACAA+TGG | + | chr2_1:30985683-30985702 | Msa0204980:CDS | 40.0% | |
| GGAACAACCCTTACAAAGAA+AGG | + | chr2_1:30985704-30985723 | Msa0204980:CDS | 40.0% | |
| TTAGGAGAGATTGGCAAGAA+TGG | + | chr2_1:30985810-30985829 | Msa0204980:CDS | 40.0% | |
| TTTGCTAAGGAGACACTTGT+GGG | + | chr2_1:30985842-30985861 | Msa0204980:CDS | 40.0% | |
| ATGCAGGAAAATCCACAGTA+TGG | + | chr2_1:30986004-30986023 | Msa0204980:intron | 40.0% | |
| TGCCTAAACTTTCCATACTG+TGG | - | chr2_1:30986019-30986038 | None:intergenic | 40.0% | |
| GGATATGGTCGATACTAGAA+AGG | + | chr2_1:30986081-30986100 | Msa0204980:CDS | 40.0% | |
| CGATACTAGAAAGGTTGCAT+TGG | + | chr2_1:30986090-30986109 | Msa0204980:CDS | 40.0% | |
| GAGAGTGGTGGTATAGATAT+CGG | + | chr2_1:30986178-30986197 | Msa0204980:CDS | 40.0% | |
| AGAGTGGTGGTATAGATATC+GGG | + | chr2_1:30986179-30986198 | Msa0204980:CDS | 40.0% | |
| ATAGATATCGGGGAAGGATA+CGG | + | chr2_1:30986190-30986209 | Msa0204980:CDS | 40.0% | |
| !! | ATACGGGGATACCGATTTAT+TGG | + | chr2_1:30986207-30986226 | Msa0204980:CDS | 40.0% |
| !! | TACGGGGATACCGATTTATT+GGG | + | chr2_1:30986208-30986227 | Msa0204980:CDS | 40.0% |
| ACGCATCACTATCATTTCCA+CGG | - | chr2_1:30986288-30986307 | None:intergenic | 40.0% | |
| TCAAGGTTTCTGATGCAGAA+AGG | + | chr2_1:30986365-30986384 | Msa0204980:CDS | 40.0% | |
| TTAAGCTCAGCAATCACTTC+AGG | - | chr2_1:30986478-30986497 | None:intergenic | 40.0% | |
| GATTGCTGAGCTTAATTGCA+TGG | + | chr2_1:30986483-30986502 | Msa0204980:CDS | 40.0% | |
| CTTAATTGCATGGAGGTCAT+TGG | + | chr2_1:30986493-30986512 | Msa0204980:CDS | 40.0% | |
| TCATTGGAAGCGATCTTGAT+TGG | + | chr2_1:30986509-30986528 | Msa0204980:CDS | 40.0% | |
| ACAACATCAGCTGACAACAT+CGG | - | chr2_1:30986540-30986559 | None:intergenic | 40.0% | |
| AGCAAACTTGCAGAACCTAA+TGG | - | chr2_1:30986834-30986853 | None:intergenic | 40.0% | |
| ! | CGTTCCCTCAGAATCACTTT+TGG | + | chr2_1:30984432-30984451 | Msa0204980:five_prime_UTR | 45.0% |
| !! | TCCCTCAGAATCACTTTTGG+AGG | + | chr2_1:30984435-30984454 | Msa0204980:five_prime_UTR | 45.0% |
| GCCTCCAAAAGTGATTCTGA+GGG | - | chr2_1:30984439-30984458 | None:intergenic | 45.0% | |
| TGCCTCCAAAAGTGATTCTG+AGG | - | chr2_1:30984440-30984459 | None:intergenic | 45.0% | |
| GCTTAAGGGCCTCTTTGAAT+TGG | + | chr2_1:30984787-30984806 | Msa0204980:intron | 45.0% | |
| TGCTTATGATTAGGGCCGAA+TGG | - | chr2_1:30985044-30985063 | None:intergenic | 45.0% | |
| TTCGTTGACCAATTAGGGAC+AGG | + | chr2_1:30985123-30985142 | Msa0204980:intron | 45.0% | |
| TCGTTGACCAATTAGGGACA+GGG | + | chr2_1:30985124-30985143 | Msa0204980:intron | 45.0% | |
| GGACAATGAGGAACATGAAG+AGG | + | chr2_1:30985570-30985589 | Msa0204980:intron | 45.0% | |
| GTGTAAGACCAAAGGCTGAA+TGG | + | chr2_1:30985615-30985634 | Msa0204980:CDS | 45.0% | |
| TTGACATCCCATTCAGCCTT+TGG | - | chr2_1:30985626-30985645 | None:intergenic | 45.0% | |
| CAACCCTTACAAAGAAAGGC+TGG | + | chr2_1:30985708-30985727 | Msa0204980:CDS | 45.0% | |
| ! | GTTTGCTAAGGAGACACTTG+TGG | + | chr2_1:30985841-30985860 | Msa0204980:CDS | 45.0% |
| CTATAGATGCACCTGATGAG+TGG | + | chr2_1:30985885-30985904 | Msa0204980:CDS | 45.0% | |
| ! | TTTTTCTCCCACCACTCATC+AGG | - | chr2_1:30985899-30985918 | None:intergenic | 45.0% |
| ! | GTGGTGGGAGAAAAAACAAC+TGG | + | chr2_1:30985904-30985923 | Msa0204980:CDS | 45.0% |
| ! | TTGCATTGGTACCCTCTTCT+GGG | + | chr2_1:30986104-30986123 | Msa0204980:CDS | 45.0% |
| TTAGGTGGTATCCCAGAAGA+GGG | - | chr2_1:30986118-30986137 | None:intergenic | 45.0% | |
| ATTAGGTGGTATCCCAGAAG+AGG | - | chr2_1:30986119-30986138 | None:intergenic | 45.0% | |
| !! | TCTTCTGGGATACCACCTAA+TGG | + | chr2_1:30986118-30986137 | Msa0204980:CDS | 45.0% |
| !! | TATCGCCTATGCTTTGAGAG+TGG | + | chr2_1:30986163-30986182 | Msa0204980:CDS | 45.0% |
| TACCACCACTCTCAAAGCAT+AGG | - | chr2_1:30986171-30986190 | None:intergenic | 45.0% | |
| GAGTGGTGGTATAGATATCG+GGG | + | chr2_1:30986180-30986199 | Msa0204980:CDS | 45.0% | |
| TAGATATCGGGGAAGGATAC+GGG | + | chr2_1:30986191-30986210 | Msa0204980:CDS | 45.0% | |
| !! | TTATTGGGAGGTGCTATTGC+TGG | + | chr2_1:30986223-30986242 | Msa0204980:CDS | 45.0% |
| CGCATCACTATCATTTCCAC+GGG | - | chr2_1:30986287-30986306 | None:intergenic | 45.0% | |
| !! | ATGAAGGCACTGATAGTACC+AGG | + | chr2_1:30986442-30986461 | Msa0204980:CDS | 45.0% |
| !! | TGAAGGCACTGATAGTACCA+GGG | + | chr2_1:30986443-30986462 | Msa0204980:CDS | 45.0% |
| ACTTCAGGAATAGATGTCCC+TGG | - | chr2_1:30986463-30986482 | None:intergenic | 45.0% | |
| TGCTGAGCTTAATTGCATGG+AGG | + | chr2_1:30986486-30986505 | Msa0204980:CDS | 45.0% | |
| CAACATCAGCTGACAACATC+GGG | - | chr2_1:30986539-30986558 | None:intergenic | 45.0% | |
| TGCTACAAACATTTCCCTCG+CGG | - | chr2_1:30986569-30986588 | None:intergenic | 45.0% | |
| !! | TGATTTCACGGTGGACTGGA+GGG | - | chr2_1:30984384-30984403 | None:intergenic | 50.0% |
| !! | TTGATTTCACGGTGGACTGG+AGG | - | chr2_1:30984385-30984404 | None:intergenic | 50.0% |
| AGCTCGGGAAGAATGGATCT+CGG | - | chr2_1:30984567-30984586 | None:intergenic | 50.0% | |
| AGATCCATTCTTCCCGAGCT+TGG | + | chr2_1:30984567-30984586 | Msa0204980:CDS | 50.0% | |
| ACTTCCAAGCTCGGGAAGAA+TGG | - | chr2_1:30984574-30984593 | None:intergenic | 50.0% | |
| TAGATGCACCTGATGAGTGG+TGG | + | chr2_1:30985888-30985907 | Msa0204980:CDS | 50.0% | |
| AGATGCACCTGATGAGTGGT+GGG | + | chr2_1:30985889-30985908 | Msa0204980:CDS | 50.0% | |
| ! | GTTGCATTGGTACCCTCTTC+TGG | + | chr2_1:30986103-30986122 | Msa0204980:CDS | 50.0% |
| GGTGGTATAGATATCGGGGA+AGG | + | chr2_1:30986184-30986203 | Msa0204980:CDS | 50.0% | |
| AGATATCGGGGAAGGATACG+GGG | + | chr2_1:30986192-30986211 | Msa0204980:CDS | 50.0% | |
| !! | GGGGATACCGATTTATTGGG+AGG | + | chr2_1:30986211-30986230 | Msa0204980:CDS | 50.0% |
| ! | TGATGTTGTTTAAGCCCGCG+AGG | + | chr2_1:30986551-30986570 | Msa0204980:CDS | 50.0% |
| ! | GATGTTGTTTAAGCCCGCGA+GGG | + | chr2_1:30986552-30986571 | Msa0204980:CDS | 50.0% |
| GCTACAAACATTTCCCTCGC+GGG | - | chr2_1:30986568-30986587 | None:intergenic | 50.0% | |
| !! | CGCCTATGCTTTGAGAGTGG+TGG | + | chr2_1:30986166-30986185 | Msa0204980:CDS | 55.0% |
| !! | GGAGGTGCTATTGCTGGAGT+TGG | + | chr2_1:30986229-30986248 | Msa0204980:CDS | 55.0% |
| GTGATGCGTGTAGCGTGAAG+AGG | + | chr2_1:30986299-30986318 | Msa0204980:CDS | 55.0% | |
| GTGTAGCGTGAAGAGGCGAA+GGG | + | chr2_1:30986306-30986325 | Msa0204980:CDS | 55.0% | |
| GTCGCACACAGCTGCTATGA+AGG | + | chr2_1:30986426-30986445 | Msa0204980:CDS | 55.0% | |
| CGTGTAGCGTGAAGAGGCGA+AGG | + | chr2_1:30986305-30986324 | Msa0204980:CDS | 60.0% | |
| AGCGTGAAGAGGCGAAGGGT+TGG | + | chr2_1:30986310-30986329 | Msa0204980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 30984378 | 30986921 | 30984378 | ID=Msa0204980;Name=Msa0204980 |
| chr2_1 | mRNA | 30984378 | 30986921 | 30984378 | ID=Msa0204980-mRNA-1;Parent=Msa0204980;Name=Msa0204980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=99|1|1|1|0.5|0.33|3|246|382 |
| chr2_1 | exon | 30984378 | 30984604 | 30984378 | ID=Msa0204980-mRNA-1:exon:10903;Parent=Msa0204980-mRNA-1 |
| chr2_1 | exon | 30985571 | 30985925 | 30985571 | ID=Msa0204980-mRNA-1:exon:10904;Parent=Msa0204980-mRNA-1 |
| chr2_1 | exon | 30986010 | 30986921 | 30986010 | ID=Msa0204980-mRNA-1:exon:10905;Parent=Msa0204980-mRNA-1 |
| chr2_1 | five_prime_UTR | 30984378 | 30984476 | 30984378 | ID=Msa0204980-mRNA-1:five_prime_utr;Parent=Msa0204980-mRNA-1 |
| chr2_1 | CDS | 30984477 | 30984604 | 30984477 | ID=Msa0204980-mRNA-1:cds;Parent=Msa0204980-mRNA-1 |
| chr2_1 | CDS | 30985571 | 30985925 | 30985571 | ID=Msa0204980-mRNA-1:cds;Parent=Msa0204980-mRNA-1 |
| chr2_1 | CDS | 30986010 | 30986675 | 30986010 | ID=Msa0204980-mRNA-1:cds;Parent=Msa0204980-mRNA-1 |
| chr2_1 | three_prime_UTR | 30986676 | 30986921 | 30986676 | ID=Msa0204980-mRNA-1:three_prime_utr;Parent=Msa0204980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
