Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320550 | PNX72202.1 | 74.118 | 340 | 79 | 2 | 42 | 380 | 1 | 332 | 1.78e-176 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320550 | sp|Q9FFJ8|LIMYB_ARATH | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.61e-14 | 78.2 |
| Msa0320550 | sp|Q9FFJ8|LIMYB_ARATH | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 4.95e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0320550 | 0.806988 | 6.294528e-50 | -8.615850e-47 |
| Msa0157290 | Msa0320550 | 0.806791 | 6.928358e-50 | -8.615850e-47 |
| Msa0171290 | Msa0320550 | 0.807888 | 4.056269e-50 | -8.615850e-47 |
| Msa0204980 | Msa0320550 | 0.842557 | 2.404010e-58 | -8.615850e-47 |
| Msa0320550 | Msa0339250 | 0.811080 | 8.371637e-51 | -8.615850e-47 |
| Msa0320550 | Msa0344080 | 0.987073 | 5.824828e-169 | -8.615850e-47 |
| Msa0320550 | Msa0395820 | 0.810692 | 1.015975e-50 | -8.615850e-47 |
| Msa0320550 | Msa0880140 | 0.806465 | 8.118443e-50 | -8.615850e-47 |
| Msa0320550 | Msa1168160 | 0.806613 | 7.556930e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320550 | MtrunA17_Chr2g0295811 | 92.825 | 223 | 16 | 0 | 158 | 380 | 9 | 231 | 9.11e-152 | 427 |
| Msa0320550 | MtrunA17_Chr1g0172741 | 44.444 | 324 | 160 | 6 | 58 | 380 | 19 | 323 | 2.33e-89 | 272 |
| Msa0320550 | MtrunA17_Chr2g0285481 | 44.444 | 324 | 160 | 6 | 58 | 380 | 19 | 323 | 1.03e-88 | 270 |
| Msa0320550 | MtrunA17_Chr8g0334551 | 45.092 | 326 | 160 | 7 | 60 | 381 | 20 | 330 | 3.11e-85 | 262 |
| Msa0320550 | MtrunA17_Chr2g0321391 | 44.275 | 262 | 127 | 5 | 119 | 380 | 3 | 245 | 6.38e-67 | 212 |
| Msa0320550 | MtrunA17_Chr5g0422701 | 42.922 | 219 | 106 | 5 | 162 | 380 | 14 | 213 | 7.27e-48 | 162 |
| Msa0320550 | MtrunA17_Chr8g0362511 | 24.684 | 316 | 209 | 6 | 62 | 370 | 68 | 361 | 1.19e-25 | 106 |
| Msa0320550 | MtrunA17_Chr2g0295611 | 53.535 | 99 | 38 | 2 | 140 | 235 | 1 | 94 | 2.56e-25 | 98.6 |
| Msa0320550 | MtrunA17_Chr5g0402821 | 25.472 | 318 | 215 | 7 | 62 | 370 | 16 | 320 | 1.40e-22 | 97.1 |
| Msa0320550 | MtrunA17_Chr5g0422691 | 44.706 | 85 | 46 | 1 | 58 | 141 | 19 | 103 | 2.91e-20 | 85.1 |
| Msa0320550 | MtrunA17_Chr3g0113081 | 33.094 | 139 | 92 | 1 | 61 | 199 | 184 | 321 | 1.57e-17 | 84.3 |
| Msa0320550 | MtrunA17_Chr3g0113081 | 34.884 | 129 | 83 | 1 | 62 | 190 | 383 | 510 | 1.04e-15 | 79.0 |
| Msa0320550 | MtrunA17_Chr3g0113081 | 33.333 | 123 | 81 | 1 | 62 | 184 | 8 | 129 | 1.85e-13 | 72.0 |
| Msa0320550 | MtrunA17_Chr6g0469501 | 50.820 | 61 | 28 | 1 | 320 | 380 | 1 | 59 | 1.34e-16 | 73.6 |
| Msa0320550 | MtrunA17_Chr5g0405761 | 26.901 | 171 | 122 | 2 | 18 | 186 | 4 | 173 | 5.02e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320550 | AT5G05800.1 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
| Msa0320550 | AT5G05800.1 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
| Msa0320550 | AT5G05800.5 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
| Msa0320550 | AT5G05800.5 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
| Msa0320550 | AT5G05800.3 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
| Msa0320550 | AT5G05800.3 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
| Msa0320550 | AT5G05800.2 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
| Msa0320550 | AT5G05800.2 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
| Msa0320550 | AT5G05800.4 | 32.117 | 137 | 92 | 1 | 62 | 198 | 167 | 302 | 1.64e-15 | 78.2 |
| Msa0320550 | AT5G05800.4 | 32.143 | 112 | 75 | 1 | 59 | 170 | 1 | 111 | 5.04e-15 | 76.6 |
| Msa0320550 | AT3G11290.2 | 29.545 | 132 | 92 | 1 | 62 | 193 | 165 | 295 | 6.60e-13 | 70.1 |
| Msa0320550 | AT3G11290.1 | 29.545 | 132 | 92 | 1 | 62 | 193 | 165 | 295 | 6.60e-13 | 70.1 |
| Msa0320550 | AT3G11310.1 | 31.250 | 144 | 91 | 3 | 60 | 197 | 171 | 312 | 3.78e-11 | 65.1 |
Find 106 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCATTGGTACCCTCTTC+TGG | 0.207423 | 2_4:+21143620 | Msa0320550:CDS |
| GATCAATCTACTTTCATAAA+TGG | 0.225444 | 2_4:-21144172 | None:intergenic |
| CGTTCCCTCAGAATCACTTT+TGG | 0.268153 | 2_4:+21141927 | Msa0320550:five_prime_UTR |
| AGGAAAGACATTGGAGATAA+AGG | 0.272766 | 2_4:+21143086 | Msa0320550:CDS |
| TCCAACTTTAATGAGAAAAC+TGG | 0.275778 | 2_4:+21143239 | Msa0320550:CDS |
| ATACGGGGATACCGATTTAT+TGG | 0.288403 | 2_4:+21143724 | Msa0320550:CDS |
| ATGCCTTGATGAAGTCAAAA+AGG | 0.298025 | 2_4:+21143166 | Msa0320550:CDS |
| CAAACAAGTGGTATAATCTT+AGG | 0.300026 | 2_4:+21143288 | Msa0320550:CDS |
| ATTGAATTGGTTAAACCATT+AGG | 0.306101 | 2_4:+21144331 | Msa0320550:three_prime_UTR |
| TTGACATCCCATTCAGCCTT+TGG | 0.309578 | 2_4:-21143119 | None:intergenic |
| ATGAGCAAAGCTTGTTGAAT+TGG | 0.320958 | 2_4:+21144122 | Msa0320550:CDS |
| GTAGTTAATTCAATGTAAAA+TGG | 0.325846 | 2_4:-21143566 | None:intergenic |
| AACTACTCTGTTCAAGGATA+TGG | 0.339439 | 2_4:+21143583 | Msa0320550:CDS |
| AGAGAGAGAAAGAAGAGGTT+AGG | 0.340973 | 2_4:-21142017 | None:intergenic |
| TTAGTTTCTTTCTTATGTAT+TGG | 0.344398 | 2_4:+21144253 | Msa0320550:three_prime_UTR |
| ATTTCCAGCCTTTCTTTGTA+AGG | 0.360922 | 2_4:-21143208 | None:intergenic |
| TTTGACAATGTTGATTGAAT+TGG | 0.365985 | 2_4:+21144318 | Msa0320550:three_prime_UTR |
| GAGAGTGGTGGTATAGATAT+CGG | 0.367630 | 2_4:+21143695 | Msa0320550:CDS |
| TTATTGGGAGGTGCTATTGC+TGG | 0.381064 | 2_4:+21143740 | Msa0320550:CDS |
| CTTAATTGCATGGAGGTCAT+TGG | 0.389948 | 2_4:+21144010 | Msa0320550:CDS |
| GAGAGAGAAAGAAGAGGTTA+GGG | 0.394401 | 2_4:-21142016 | None:intergenic |
| GTTTGTAGCATTACAAGTAC+TGG | 0.394698 | 2_4:+21144096 | Msa0320550:CDS |
| TTAAGCTCAGCAATCACTTC+AGG | 0.402179 | 2_4:-21143992 | None:intergenic |
| AGAGTGGTGGTATAGATATC+GGG | 0.408274 | 2_4:+21143696 | Msa0320550:CDS |
| TTGCATTGGTACCCTCTTCT+GGG | 0.417526 | 2_4:+21143621 | Msa0320550:CDS |
| TAGATATCGGGGAAGGATAC+GGG | 0.418824 | 2_4:+21143708 | Msa0320550:CDS |
| TGAATTAACTACTCTGTTCA+AGG | 0.421835 | 2_4:+21143577 | Msa0320550:CDS |
| TCATTGGAAGCGATCTTGAT+TGG | 0.423771 | 2_4:+21144026 | Msa0320550:CDS |
| TACGGGGATACCGATTTATT+GGG | 0.430242 | 2_4:+21143725 | Msa0320550:CDS |
| GGTATAATCTTAGGAGAGAT+TGG | 0.437960 | 2_4:+21143297 | Msa0320550:CDS |
| ATAGATATCGGGGAAGGATA+CGG | 0.443209 | 2_4:+21143707 | Msa0320550:CDS |
| AGCAAACTTGCAGAACCTAA+TGG | 0.449923 | 2_4:-21144346 | None:intergenic |
| GTATGGAAAGTTTAGGCAAA+AGG | 0.457845 | 2_4:+21143538 | Msa0320550:CDS |
| CAACATCAGCTGACAACATC+GGG | 0.459096 | 2_4:-21144053 | None:intergenic |
| GTGTAAGACCAAAGGCTGAA+TGG | 0.473181 | 2_4:+21143111 | Msa0320550:CDS |
| ATCCACCGTATGGAAAGTTT+AGG | 0.475941 | 2_4:+21143531 | Msa0320550:CDS |
| AATAGCACCTCCCAATAAAT+CGG | 0.477242 | 2_4:-21143735 | None:intergenic |
| ACTTCCGAGCTCGGGAAGAA+TGG | 0.477604 | 2_4:-21142066 | None:intergenic |
| TTTCCAGCCTTTCTTTGTAA+GGG | 0.482225 | 2_4:-21143207 | None:intergenic |
| TGTAAGACCAAAGGCTGAAT+GGG | 0.486012 | 2_4:+21143112 | Msa0320550:CDS |
| AGCAAACACATAAGCTTAAG+TGG | 0.494403 | 2_4:-21144288 | None:intergenic |
| AGCTCGGAAGTTGTAACATC+AGG | 0.495153 | 2_4:+21142078 | Msa0320550:CDS |
| GGAGGTGCTATTGCTGGAGT+TGG | 0.495766 | 2_4:+21143746 | Msa0320550:CDS |
| TCTTCTGGGATACCACCTAA+TGG | 0.496004 | 2_4:+21143635 | Msa0320550:CDS |
| ATGGTATAAGTTGTTTGCTA+AGG | 0.498533 | 2_4:+21143325 | Msa0320550:CDS |
| TTAGGAGAGATTGGCAAGAA+TGG | 0.506891 | 2_4:+21143306 | Msa0320550:CDS |
| ATGTTACAACTTCCGAGCTC+GGG | 0.507050 | 2_4:-21142074 | None:intergenic |
| TTTGCTAAGGAGACACTTGT+GGG | 0.512651 | 2_4:+21143338 | Msa0320550:CDS |
| GATGTTACAACTTCCGAGCT+CGG | 0.515749 | 2_4:-21142075 | None:intergenic |
| GGAACAACCCTTACAAAGAA+AGG | 0.520070 | 2_4:+21143200 | Msa0320550:CDS |
| ATGAAGGCACTGATAGTACC+TGG | 0.520648 | 2_4:+21143959 | Msa0320550:CDS |
| GTCGCACACAGCTGCTATGA+AGG | 0.526769 | 2_4:+21143943 | Msa0320550:CDS |
| TGCCTCCAAAAGTGATTCTG+AGG | 0.534987 | 2_4:-21141932 | None:intergenic |
| TATGGAAAGTTTAGGCAAAA+GGG | 0.535211 | 2_4:+21143539 | Msa0320550:CDS |
| CAACCCTTACAAAGAAAGGC+TGG | 0.537841 | 2_4:+21143204 | Msa0320550:CDS |
| AGATCCATTCTTCCCGAGCT+CGG | 0.546963 | 2_4:+21142062 | Msa0320550:CDS |
| CGCATCACTATCATTTCCAC+GGG | 0.547701 | 2_4:-21143801 | None:intergenic |
| GTGATGCGTGTAGCGTGAAG+AGG | 0.550255 | 2_4:+21143816 | Msa0320550:CDS |
| GCTACAAACATTTCCCTCGC+GGG | 0.550949 | 2_4:-21144082 | None:intergenic |
| CCAACTTTAATGAGAAAACT+GGG | 0.556179 | 2_4:+21143240 | Msa0320550:CDS |
| CGTGTAGCGTGAAGAGGCGA+AGG | 0.564658 | 2_4:+21143822 | Msa0320550:CDS |
| GATTGCTGAGCTTAATTGCA+TGG | 0.565046 | 2_4:+21144000 | Msa0320550:CDS |
| ACGCATCACTATCATTTCCA+CGG | 0.565136 | 2_4:-21143802 | None:intergenic |
| TCAAGGTTTCTGATGCAGAA+AGG | 0.566852 | 2_4:+21143882 | Msa0320550:CDS |
| TTTGTAGCATTACAAGTACT+GGG | 0.568955 | 2_4:+21144097 | Msa0320550:CDS |
| AACATGAAGAGGAAAGACAT+TGG | 0.569372 | 2_4:+21143077 | Msa0320550:CDS |
| GGATATGGTCGATACTAGAA+AGG | 0.569942 | 2_4:+21143598 | Msa0320550:CDS |
| TTGATTTCACGGTGGACTGG+AGG | 0.570075 | 2_4:-21141877 | None:intergenic |
| AGCGTGAAGAGGCGAAGGGT+TGG | 0.570317 | 2_4:+21143827 | Msa0320550:CDS |
| TGCCTAAACTTTCCATACGG+TGG | 0.571310 | 2_4:-21143533 | None:intergenic |
| ATGCAGGAAAATCCACCGTA+TGG | 0.572978 | 2_4:+21143521 | Msa0320550:intron |
| GGACAATGAGGAACATGAAG+AGG | 0.574669 | 2_4:+21143066 | Msa0320550:intron |
| GTTTGCTAAGGAGACACTTG+TGG | 0.579425 | 2_4:+21143337 | Msa0320550:CDS |
| CGATACTAGAAAGGTTGCAT+TGG | 0.580122 | 2_4:+21143607 | Msa0320550:CDS |
| ACATAAGAAAGAAACTAAGT+AGG | 0.580248 | 2_4:-21144248 | None:intergenic |
| GCCTCCAAAAGTGATTCTGA+GGG | 0.580392 | 2_4:-21141931 | None:intergenic |
| CGCCTATGCTTTGAGAGTGG+TGG | 0.580624 | 2_4:+21143683 | Msa0320550:CDS |
| TGATTTCACGGTGGACTGGA+GGG | 0.587302 | 2_4:-21141876 | None:intergenic |
| AGATATCGGGGAAGGATACG+GGG | 0.587830 | 2_4:+21143709 | Msa0320550:CDS |
| ACAACATCAGCTGACAACAT+CGG | 0.591838 | 2_4:-21144054 | None:intergenic |
| TTTGAGATTCTATCACAGCT+AGG | 0.591976 | 2_4:-21144370 | None:intergenic |
| AAAGACATTGGAGATAAAGG+AGG | 0.594640 | 2_4:+21143089 | Msa0320550:CDS |
| CTTTAATGAGAAAACTGGGA+AGG | 0.595599 | 2_4:+21143244 | Msa0320550:CDS |
| AGAGAAGAGAGAGAAAGAAG+AGG | 0.599037 | 2_4:-21142022 | None:intergenic |
| TGGTTTGCTTAAGGACAATG+AGG | 0.599503 | 2_4:+21143054 | Msa0320550:intron |
| AGCTCGGGAAGAATGGATCT+CGG | 0.607212 | 2_4:-21142059 | None:intergenic |
| TCTACTTTCATAAATGGCAG+AGG | 0.608958 | 2_4:-21144166 | None:intergenic |
| GGTGGTATAGATATCGGGGA+AGG | 0.608971 | 2_4:+21143701 | Msa0320550:CDS |
| ACTTCAGGAATAGATGTCCC+AGG | 0.611416 | 2_4:-21143977 | None:intergenic |
| ATAAGCAATTAACAAACAAG+TGG | 0.615520 | 2_4:+21143276 | Msa0320550:CDS |
| ATTAGGTGGTATCCCAGAAG+AGG | 0.626494 | 2_4:-21143633 | None:intergenic |
| GATGTTGTTTAAGCCCGCGA+GGG | 0.627996 | 2_4:+21144069 | Msa0320550:CDS |
| TAGATGCACCTGATGAGTGG+TGG | 0.638418 | 2_4:+21143384 | Msa0320550:CDS |
| GGGGATACCGATTTATTGGG+AGG | 0.641816 | 2_4:+21143728 | Msa0320550:CDS |
| AGATGCACCTGATGAGTGGT+GGG | 0.645494 | 2_4:+21143385 | Msa0320550:CDS |
| GAGTGGTGGTATAGATATCG+GGG | 0.648568 | 2_4:+21143697 | Msa0320550:CDS |
| TAAAGGAGGTGTAAGACCAA+AGG | 0.652942 | 2_4:+21143103 | Msa0320550:CDS |
| TGCTACAAACATTTCCCTCG+CGG | 0.656038 | 2_4:-21144083 | None:intergenic |
| TACCACCACTCTCAAAGCAT+AGG | 0.658988 | 2_4:-21143685 | None:intergenic |
| TTAGGTGGTATCCCAGAAGA+GGG | 0.662469 | 2_4:-21143632 | None:intergenic |
| TGAAGGCACTGATAGTACCT+GGG | 0.672680 | 2_4:+21143960 | Msa0320550:CDS |
| CTATAGATGCACCTGATGAG+TGG | 0.677735 | 2_4:+21143381 | Msa0320550:CDS |
| TGATGTTGTTTAAGCCCGCG+AGG | 0.680542 | 2_4:+21144068 | Msa0320550:CDS |
| TATCGCCTATGCTTTGAGAG+TGG | 0.702750 | 2_4:+21143680 | Msa0320550:CDS |
| GTGTAGCGTGAAGAGGCGAA+GGG | 0.723526 | 2_4:+21143823 | Msa0320550:CDS |
| TGCTGAGCTTAATTGCATGG+AGG | 0.754574 | 2_4:+21144003 | Msa0320550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTAAATTTGCA+TGG | + | chr2_4:21142224-21142243 | Msa0320550:intron | 10.0% |
| !!! | TGTTTTTTTTTTTGATTTCA+CGG | - | chr2_4:21141891-21141910 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACATAGTTGTT+TGG | + | chr2_4:21141899-21141918 | Msa0320550:five_prime_UTR | 15.0% |
| !! | AAAATGAATATAGAAAACTT+TGG | + | chr2_4:21142903-21142922 | Msa0320550:intron | 15.0% |
| !! | TATATTAAATATGTTACCTA+AGG | + | chr2_4:21143019-21143038 | Msa0320550:intron | 15.0% |
| !!! | TCTATAAAGTTAAACTGTTT+TGG | - | chr2_4:21142455-21142474 | None:intergenic | 20.0% |
| !!! | AATAAGTATTGTATTCCATT+CGG | + | chr2_4:21142522-21142541 | Msa0320550:intron | 20.0% |
| !!! | TCAAATAAAGTTGATGTATT+TGG | + | chr2_4:21142568-21142587 | Msa0320550:intron | 20.0% |
| !!! | CTTGGTTTATTTTCAATATA+AGG | - | chr2_4:21142940-21142959 | None:intergenic | 20.0% |
| !! | GTAGTTAATTCAATGTAAAA+TGG | - | chr2_4:21143569-21143588 | None:intergenic | 20.0% |
| !! | TGAGAAGAATAAAAATATCA+AGG | + | chr2_4:21143865-21143884 | Msa0320550:CDS | 20.0% |
| !! | TTAGTTTCTTTCTTATGTAT+TGG | + | chr2_4:21144253-21144272 | Msa0320550:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTTGATTTCACGG+TGG | - | chr2_4:21141888-21141907 | None:intergenic | 25.0% |
| ! | AAAAACATAGTTGTTTGGTT+TGG | + | chr2_4:21141904-21141923 | Msa0320550:five_prime_UTR | 25.0% |
| ! | TTTGCAACATCAACATTATT+AGG | + | chr2_4:21142129-21142148 | Msa0320550:intron | 25.0% |
| !!! | ATCAGTAAGAGTATTATTCT+AGG | + | chr2_4:21142189-21142208 | Msa0320550:intron | 25.0% |
| !! | TAAAATCGATTTCCTTCAAA+AGG | + | chr2_4:21142249-21142268 | Msa0320550:intron | 25.0% |
| !! | AAAATCGATTTCCTTCAAAA+GGG | + | chr2_4:21142250-21142269 | Msa0320550:intron | 25.0% |
| ! | TCAAATAATCCAATTCAAAG+AGG | - | chr2_4:21142295-21142314 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTTAGACTGTT+TGG | + | chr2_4:21142329-21142348 | Msa0320550:intron | 25.0% |
| !!! | TAAGTTTTGTTAGACTGTTT+GGG | + | chr2_4:21142330-21142349 | Msa0320550:intron | 25.0% |
| !!! | CCTATTTTTGCTTATGATTA+GGG | - | chr2_4:21142548-21142567 | None:intergenic | 25.0% |
| !!! | ACCTATTTTTGCTTATGATT+AGG | - | chr2_4:21142549-21142568 | None:intergenic | 25.0% |
| ! | TTCAGAAACAATGAAAACAA+TGG | + | chr2_4:21142771-21142790 | Msa0320550:intron | 25.0% |
| !!! | AATTTCTGAAATGCTAGATT+TGG | + | chr2_4:21142809-21142828 | Msa0320550:intron | 25.0% |
| ! | TAATTGTCTACTAAATGACT+TGG | - | chr2_4:21142958-21142977 | None:intergenic | 25.0% |
| ! | ATAAGCAATTAACAAACAAG+TGG | + | chr2_4:21143276-21143295 | Msa0320550:CDS | 25.0% |
| !!! | TGATTAGTTTATAAACATGC+AGG | + | chr2_4:21143505-21143524 | Msa0320550:intron | 25.0% |
| !! | TTATTTTCATCTATGCCATT+AGG | - | chr2_4:21143653-21143672 | None:intergenic | 25.0% |
| ! | GATCAATCTACTTTCATAAA+TGG | - | chr2_4:21144175-21144194 | None:intergenic | 25.0% |
| ! | ACATAAGAAAGAAACTAAGT+AGG | - | chr2_4:21144251-21144270 | None:intergenic | 25.0% |
| !! | TTTGACAATGTTGATTGAAT+TGG | + | chr2_4:21144318-21144337 | Msa0320550:three_prime_UTR | 25.0% |
| ! | ATTGAATTGGTTAAACCATT+AGG | + | chr2_4:21144331-21144350 | Msa0320550:three_prime_UTR | 25.0% |
| GGAATACAATACTTATTGCT+TGG | - | chr2_4:21142519-21142538 | None:intergenic | 30.0% | |
| CCCTAATCATAAGCAAAAAT+AGG | + | chr2_4:21142545-21142564 | Msa0320550:intron | 30.0% | |
| !! | GATGTATTTGGCTCAAATTT+TGG | + | chr2_4:21142580-21142599 | Msa0320550:intron | 30.0% |
| ! | TCAACGAAAATTGAGGTATT+TGG | - | chr2_4:21142607-21142626 | None:intergenic | 30.0% |
| TAATTGGTCAACGAAAATTG+AGG | - | chr2_4:21142614-21142633 | None:intergenic | 30.0% | |
| ! | TCAATTTTCGTTGACCAATT+AGG | + | chr2_4:21142613-21142632 | Msa0320550:intron | 30.0% |
| ! | CAATTTTCGTTGACCAATTA+GGG | + | chr2_4:21142614-21142633 | Msa0320550:intron | 30.0% |
| CAATTGTGATAGAGAGAATA+TGG | + | chr2_4:21142724-21142743 | Msa0320550:intron | 30.0% | |
| ! | TATTTTTCTTTCTTGCACCA+AGG | + | chr2_4:21142976-21142995 | Msa0320550:intron | 30.0% |
| !!! | TGCTTATTTTGGTTTGCTTA+AGG | + | chr2_4:21143045-21143064 | Msa0320550:intron | 30.0% |
| TCCAACTTTAATGAGAAAAC+TGG | + | chr2_4:21143239-21143258 | Msa0320550:CDS | 30.0% | |
| CCAACTTTAATGAGAAAACT+GGG | + | chr2_4:21143240-21143259 | Msa0320550:CDS | 30.0% | |
| CAAACAAGTGGTATAATCTT+AGG | + | chr2_4:21143288-21143307 | Msa0320550:CDS | 30.0% | |
| ! | ATGGTATAAGTTGTTTGCTA+AGG | + | chr2_4:21143325-21143344 | Msa0320550:CDS | 30.0% |
| ! | TTTTGCCTAAACTTTCCATA+CGG | - | chr2_4:21143539-21143558 | None:intergenic | 30.0% |
| TATGGAAAGTTTAGGCAAAA+GGG | + | chr2_4:21143539-21143558 | Msa0320550:CDS | 30.0% | |
| TGAATTAACTACTCTGTTCA+AGG | + | chr2_4:21143577-21143596 | Msa0320550:CDS | 30.0% | |
| TTTGTAGCATTACAAGTACT+GGG | + | chr2_4:21144097-21144116 | Msa0320550:CDS | 30.0% | |
| !! | CATTAGGCTAAAGCATTTTA+TGG | + | chr2_4:21144225-21144244 | Msa0320550:three_prime_UTR | 30.0% |
| GTTGCAAAAATGAAGAGACA+GGG | - | chr2_4:21142117-21142136 | None:intergenic | 35.0% | |
| TGTTGCAAAAATGAAGAGAC+AGG | - | chr2_4:21142118-21142137 | None:intergenic | 35.0% | |
| TAAGCTATCGAAGAGAACTT+AGG | - | chr2_4:21142402-21142421 | None:intergenic | 35.0% | |
| ATCAAGCAAAAAGACAACCT+TGG | - | chr2_4:21142996-21143015 | None:intergenic | 35.0% | |
| ! | ACCTAAGGACATGCTTATTT+TGG | + | chr2_4:21143034-21143053 | Msa0320550:intron | 35.0% |
| ACCAAAATAAGCATGTCCTT+AGG | - | chr2_4:21143038-21143057 | None:intergenic | 35.0% | |
| AACATGAAGAGGAAAGACAT+TGG | + | chr2_4:21143077-21143096 | Msa0320550:CDS | 35.0% | |
| AGGAAAGACATTGGAGATAA+AGG | + | chr2_4:21143086-21143105 | Msa0320550:CDS | 35.0% | |
| AAAGACATTGGAGATAAAGG+AGG | + | chr2_4:21143089-21143108 | Msa0320550:CDS | 35.0% | |
| ATGCCTTGATGAAGTCAAAA+AGG | + | chr2_4:21143166-21143185 | Msa0320550:CDS | 35.0% | |
| TGCCTTGATGAAGTCAAAAA+GGG | + | chr2_4:21143167-21143186 | Msa0320550:CDS | 35.0% | |
| TTTCCAGCCTTTCTTTGTAA+GGG | - | chr2_4:21143210-21143229 | None:intergenic | 35.0% | |
| ATTTCCAGCCTTTCTTTGTA+AGG | - | chr2_4:21143211-21143230 | None:intergenic | 35.0% | |
| ! | CCCAGTTTTCTCATTAAAGT+TGG | - | chr2_4:21143243-21143262 | None:intergenic | 35.0% |
| CTTTAATGAGAAAACTGGGA+AGG | + | chr2_4:21143244-21143263 | Msa0320550:CDS | 35.0% | |
| GGTATAATCTTAGGAGAGAT+TGG | + | chr2_4:21143297-21143316 | Msa0320550:CDS | 35.0% | |
| GTATGGAAAGTTTAGGCAAA+AGG | + | chr2_4:21143538-21143557 | Msa0320550:CDS | 35.0% | |
| AACTACTCTGTTCAAGGATA+TGG | + | chr2_4:21143583-21143602 | Msa0320550:CDS | 35.0% | |
| ! | TTTTCATCTATGCCATTAGG+TGG | - | chr2_4:21143650-21143669 | None:intergenic | 35.0% |
| AATAGCACCTCCCAATAAAT+CGG | - | chr2_4:21143738-21143757 | None:intergenic | 35.0% | |
| !! | ATAAATTTTAGCACATCCCG+TGG | + | chr2_4:21143785-21143804 | Msa0320550:CDS | 35.0% |
| GTTTGTAGCATTACAAGTAC+TGG | + | chr2_4:21144096-21144115 | Msa0320550:CDS | 35.0% | |
| !! | ATGAGCAAAGCTTGTTGAAT+TGG | + | chr2_4:21144122-21144141 | Msa0320550:CDS | 35.0% |
| TCTACTTTCATAAATGGCAG+AGG | - | chr2_4:21144169-21144188 | None:intergenic | 35.0% | |
| ! | GATTTGAGTGCTTTTGCATT+AGG | + | chr2_4:21144209-21144228 | Msa0320550:three_prime_UTR | 35.0% |
| AGCAAACACATAAGCTTAAG+TGG | - | chr2_4:21144291-21144310 | None:intergenic | 35.0% | |
| ! | TTTGAGATTCTATCACAGCT+AGG | - | chr2_4:21144373-21144392 | None:intergenic | 35.0% |
| !!! | TTTTTGATTTCACGGTGGAC+TGG | - | chr2_4:21141883-21141902 | None:intergenic | 40.0% |
| GAGAGAGAAAGAAGAGGTTA+GGG | - | chr2_4:21142019-21142038 | None:intergenic | 40.0% | |
| AGAGAGAGAAAGAAGAGGTT+AGG | - | chr2_4:21142020-21142039 | None:intergenic | 40.0% | |
| AGAGAAGAGAGAGAAAGAAG+AGG | - | chr2_4:21142025-21142044 | None:intergenic | 40.0% | |
| ATGAAGAGACAGGGAAGAAA+AGG | - | chr2_4:21142108-21142127 | None:intergenic | 40.0% | |
| ! | CAATCAAGAAGCCCTTTTGA+AGG | - | chr2_4:21142264-21142283 | None:intergenic | 40.0% |
| AAGGGCTTCTTGATTGCTTA+AGG | + | chr2_4:21142268-21142287 | Msa0320550:intron | 40.0% | |
| AGGGCTTCTTGATTGCTTAA+GGG | + | chr2_4:21142269-21142288 | Msa0320550:intron | 40.0% | |
| TATCATACCCTGTCCCTAAT+TGG | - | chr2_4:21142630-21142649 | None:intergenic | 40.0% | |
| !! | TGGTTTGCTTAAGGACAATG+AGG | + | chr2_4:21143054-21143073 | Msa0320550:intron | 40.0% |
| ! | TAAAGGAGGTGTAAGACCAA+AGG | + | chr2_4:21143103-21143122 | Msa0320550:CDS | 40.0% |
| TGTAAGACCAAAGGCTGAAT+GGG | + | chr2_4:21143112-21143131 | Msa0320550:CDS | 40.0% | |
| !!! | CTCCCTTTTTGACTTCATCA+AGG | - | chr2_4:21143172-21143191 | None:intergenic | 40.0% |
| GTCAAAAAGGGAGAACACAA+TGG | + | chr2_4:21143179-21143198 | Msa0320550:CDS | 40.0% | |
| GGAACAACCCTTACAAAGAA+AGG | + | chr2_4:21143200-21143219 | Msa0320550:CDS | 40.0% | |
| TTAGGAGAGATTGGCAAGAA+TGG | + | chr2_4:21143306-21143325 | Msa0320550:CDS | 40.0% | |
| TTTGCTAAGGAGACACTTGT+GGG | + | chr2_4:21143338-21143357 | Msa0320550:CDS | 40.0% | |
| ATCCACCGTATGGAAAGTTT+AGG | + | chr2_4:21143531-21143550 | Msa0320550:CDS | 40.0% | |
| GGATATGGTCGATACTAGAA+AGG | + | chr2_4:21143598-21143617 | Msa0320550:CDS | 40.0% | |
| CGATACTAGAAAGGTTGCAT+TGG | + | chr2_4:21143607-21143626 | Msa0320550:CDS | 40.0% | |
| GAGAGTGGTGGTATAGATAT+CGG | + | chr2_4:21143695-21143714 | Msa0320550:CDS | 40.0% | |
| AGAGTGGTGGTATAGATATC+GGG | + | chr2_4:21143696-21143715 | Msa0320550:CDS | 40.0% | |
| ATAGATATCGGGGAAGGATA+CGG | + | chr2_4:21143707-21143726 | Msa0320550:CDS | 40.0% | |
| !! | ATACGGGGATACCGATTTAT+TGG | + | chr2_4:21143724-21143743 | Msa0320550:CDS | 40.0% |
| !! | TACGGGGATACCGATTTATT+GGG | + | chr2_4:21143725-21143744 | Msa0320550:CDS | 40.0% |
| ACGCATCACTATCATTTCCA+CGG | - | chr2_4:21143805-21143824 | None:intergenic | 40.0% | |
| TCAAGGTTTCTGATGCAGAA+AGG | + | chr2_4:21143882-21143901 | Msa0320550:CDS | 40.0% | |
| TTAAGCTCAGCAATCACTTC+AGG | - | chr2_4:21143995-21144014 | None:intergenic | 40.0% | |
| GATTGCTGAGCTTAATTGCA+TGG | + | chr2_4:21144000-21144019 | Msa0320550:CDS | 40.0% | |
| CTTAATTGCATGGAGGTCAT+TGG | + | chr2_4:21144010-21144029 | Msa0320550:CDS | 40.0% | |
| TCATTGGAAGCGATCTTGAT+TGG | + | chr2_4:21144026-21144045 | Msa0320550:CDS | 40.0% | |
| ACAACATCAGCTGACAACAT+CGG | - | chr2_4:21144057-21144076 | None:intergenic | 40.0% | |
| AGCAAACTTGCAGAACCTAA+TGG | - | chr2_4:21144349-21144368 | None:intergenic | 40.0% | |
| ! | CGTTCCCTCAGAATCACTTT+TGG | + | chr2_4:21141927-21141946 | Msa0320550:five_prime_UTR | 45.0% |
| !! | TCCCTCAGAATCACTTTTGG+AGG | + | chr2_4:21141930-21141949 | Msa0320550:five_prime_UTR | 45.0% |
| GCCTCCAAAAGTGATTCTGA+GGG | - | chr2_4:21141934-21141953 | None:intergenic | 45.0% | |
| TGCCTCCAAAAGTGATTCTG+AGG | - | chr2_4:21141935-21141954 | None:intergenic | 45.0% | |
| ATGTTACAACTTCCGAGCTC+GGG | - | chr2_4:21142077-21142096 | None:intergenic | 45.0% | |
| GATGTTACAACTTCCGAGCT+CGG | - | chr2_4:21142078-21142097 | None:intergenic | 45.0% | |
| AGCTCGGAAGTTGTAACATC+AGG | + | chr2_4:21142078-21142097 | Msa0320550:CDS | 45.0% | |
| GCTTAAGGGCCTCTTTGAAT+TGG | + | chr2_4:21142283-21142302 | Msa0320550:intron | 45.0% | |
| TGCTTATGATTAGGGCCGAA+TGG | - | chr2_4:21142540-21142559 | None:intergenic | 45.0% | |
| TTCGTTGACCAATTAGGGAC+AGG | + | chr2_4:21142619-21142638 | Msa0320550:intron | 45.0% | |
| TCGTTGACCAATTAGGGACA+GGG | + | chr2_4:21142620-21142639 | Msa0320550:intron | 45.0% | |
| GGACAATGAGGAACATGAAG+AGG | + | chr2_4:21143066-21143085 | Msa0320550:intron | 45.0% | |
| GTGTAAGACCAAAGGCTGAA+TGG | + | chr2_4:21143111-21143130 | Msa0320550:CDS | 45.0% | |
| TTGACATCCCATTCAGCCTT+TGG | - | chr2_4:21143122-21143141 | None:intergenic | 45.0% | |
| CAACCCTTACAAAGAAAGGC+TGG | + | chr2_4:21143204-21143223 | Msa0320550:CDS | 45.0% | |
| ! | GTTTGCTAAGGAGACACTTG+TGG | + | chr2_4:21143337-21143356 | Msa0320550:CDS | 45.0% |
| CTATAGATGCACCTGATGAG+TGG | + | chr2_4:21143381-21143400 | Msa0320550:CDS | 45.0% | |
| ! | TTTTTCTCCCACCACTCATC+AGG | - | chr2_4:21143395-21143414 | None:intergenic | 45.0% |
| ! | GTGGTGGGAGAAAAAACAAC+TGG | + | chr2_4:21143400-21143419 | Msa0320550:CDS | 45.0% |
| ATGCAGGAAAATCCACCGTA+TGG | + | chr2_4:21143521-21143540 | Msa0320550:intron | 45.0% | |
| TGCCTAAACTTTCCATACGG+TGG | - | chr2_4:21143536-21143555 | None:intergenic | 45.0% | |
| ! | TTGCATTGGTACCCTCTTCT+GGG | + | chr2_4:21143621-21143640 | Msa0320550:CDS | 45.0% |
| TTAGGTGGTATCCCAGAAGA+GGG | - | chr2_4:21143635-21143654 | None:intergenic | 45.0% | |
| ATTAGGTGGTATCCCAGAAG+AGG | - | chr2_4:21143636-21143655 | None:intergenic | 45.0% | |
| !! | TCTTCTGGGATACCACCTAA+TGG | + | chr2_4:21143635-21143654 | Msa0320550:CDS | 45.0% |
| !! | TATCGCCTATGCTTTGAGAG+TGG | + | chr2_4:21143680-21143699 | Msa0320550:CDS | 45.0% |
| TACCACCACTCTCAAAGCAT+AGG | - | chr2_4:21143688-21143707 | None:intergenic | 45.0% | |
| GAGTGGTGGTATAGATATCG+GGG | + | chr2_4:21143697-21143716 | Msa0320550:CDS | 45.0% | |
| TAGATATCGGGGAAGGATAC+GGG | + | chr2_4:21143708-21143727 | Msa0320550:CDS | 45.0% | |
| !! | TTATTGGGAGGTGCTATTGC+TGG | + | chr2_4:21143740-21143759 | Msa0320550:CDS | 45.0% |
| CGCATCACTATCATTTCCAC+GGG | - | chr2_4:21143804-21143823 | None:intergenic | 45.0% | |
| !! | ATGAAGGCACTGATAGTACC+TGG | + | chr2_4:21143959-21143978 | Msa0320550:CDS | 45.0% |
| !! | TGAAGGCACTGATAGTACCT+GGG | + | chr2_4:21143960-21143979 | Msa0320550:CDS | 45.0% |
| ACTTCAGGAATAGATGTCCC+AGG | - | chr2_4:21143980-21143999 | None:intergenic | 45.0% | |
| TGCTGAGCTTAATTGCATGG+AGG | + | chr2_4:21144003-21144022 | Msa0320550:CDS | 45.0% | |
| CAACATCAGCTGACAACATC+GGG | - | chr2_4:21144056-21144075 | None:intergenic | 45.0% | |
| TGCTACAAACATTTCCCTCG+CGG | - | chr2_4:21144086-21144105 | None:intergenic | 45.0% | |
| !! | TGATTTCACGGTGGACTGGA+GGG | - | chr2_4:21141879-21141898 | None:intergenic | 50.0% |
| !! | TTGATTTCACGGTGGACTGG+AGG | - | chr2_4:21141880-21141899 | None:intergenic | 50.0% |
| AGCTCGGGAAGAATGGATCT+CGG | - | chr2_4:21142062-21142081 | None:intergenic | 50.0% | |
| AGATCCATTCTTCCCGAGCT+CGG | + | chr2_4:21142062-21142081 | Msa0320550:CDS | 50.0% | |
| TAGATGCACCTGATGAGTGG+TGG | + | chr2_4:21143384-21143403 | Msa0320550:CDS | 50.0% | |
| AGATGCACCTGATGAGTGGT+GGG | + | chr2_4:21143385-21143404 | Msa0320550:CDS | 50.0% | |
| ! | GTTGCATTGGTACCCTCTTC+TGG | + | chr2_4:21143620-21143639 | Msa0320550:CDS | 50.0% |
| GGTGGTATAGATATCGGGGA+AGG | + | chr2_4:21143701-21143720 | Msa0320550:CDS | 50.0% | |
| AGATATCGGGGAAGGATACG+GGG | + | chr2_4:21143709-21143728 | Msa0320550:CDS | 50.0% | |
| !! | GGGGATACCGATTTATTGGG+AGG | + | chr2_4:21143728-21143747 | Msa0320550:CDS | 50.0% |
| ! | TGATGTTGTTTAAGCCCGCG+AGG | + | chr2_4:21144068-21144087 | Msa0320550:CDS | 50.0% |
| ! | GATGTTGTTTAAGCCCGCGA+GGG | + | chr2_4:21144069-21144088 | Msa0320550:CDS | 50.0% |
| GCTACAAACATTTCCCTCGC+GGG | - | chr2_4:21144085-21144104 | None:intergenic | 50.0% | |
| ACTTCCGAGCTCGGGAAGAA+TGG | - | chr2_4:21142069-21142088 | None:intergenic | 55.0% | |
| !! | CGCCTATGCTTTGAGAGTGG+TGG | + | chr2_4:21143683-21143702 | Msa0320550:CDS | 55.0% |
| !! | GGAGGTGCTATTGCTGGAGT+TGG | + | chr2_4:21143746-21143765 | Msa0320550:CDS | 55.0% |
| GTGATGCGTGTAGCGTGAAG+AGG | + | chr2_4:21143816-21143835 | Msa0320550:CDS | 55.0% | |
| GTGTAGCGTGAAGAGGCGAA+GGG | + | chr2_4:21143823-21143842 | Msa0320550:CDS | 55.0% | |
| GTCGCACACAGCTGCTATGA+AGG | + | chr2_4:21143943-21143962 | Msa0320550:CDS | 55.0% | |
| CGTGTAGCGTGAAGAGGCGA+AGG | + | chr2_4:21143822-21143841 | Msa0320550:CDS | 60.0% | |
| AGCGTGAAGAGGCGAAGGGT+TGG | + | chr2_4:21143827-21143846 | Msa0320550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 21141873 | 21144436 | 21141873 | ID=Msa0320550;Name=Msa0320550 |
| chr2_4 | mRNA | 21141873 | 21144436 | 21141873 | ID=Msa0320550-mRNA-1;Parent=Msa0320550;Name=Msa0320550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=99|1|1|1|0.5|0.33|3|244|382 |
| chr2_4 | exon | 21141873 | 21142099 | 21141873 | ID=Msa0320550-mRNA-1:exon:7734;Parent=Msa0320550-mRNA-1 |
| chr2_4 | exon | 21143067 | 21143421 | 21143067 | ID=Msa0320550-mRNA-1:exon:7735;Parent=Msa0320550-mRNA-1 |
| chr2_4 | exon | 21143527 | 21144436 | 21143527 | ID=Msa0320550-mRNA-1:exon:7736;Parent=Msa0320550-mRNA-1 |
| chr2_4 | five_prime_UTR | 21141873 | 21141971 | 21141873 | ID=Msa0320550-mRNA-1:five_prime_utr;Parent=Msa0320550-mRNA-1 |
| chr2_4 | CDS | 21141972 | 21142099 | 21141972 | ID=Msa0320550-mRNA-1:cds;Parent=Msa0320550-mRNA-1 |
| chr2_4 | CDS | 21143067 | 21143421 | 21143067 | ID=Msa0320550-mRNA-1:cds;Parent=Msa0320550-mRNA-1 |
| chr2_4 | CDS | 21143527 | 21144192 | 21143527 | ID=Msa0320550-mRNA-1:cds;Parent=Msa0320550-mRNA-1 |
| chr2_4 | three_prime_UTR | 21144193 | 21144436 | 21144193 | ID=Msa0320550-mRNA-1:three_prime_utr;Parent=Msa0320550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
