Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357960 | XP_013460928.1 | 92.532 | 616 | 45 | 1 | 4 | 619 | 8 | 622 | 0.0 | 1210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357960 | sp|Q5MAU8|PPA27_ARATH | 73.322 | 611 | 157 | 3 | 9 | 619 | 6 | 610 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357960 | A0A072UZJ4 | 92.532 | 616 | 45 | 1 | 4 | 619 | 8 | 622 | 0.0 | 1210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106540 | Msa0357960 | 0.801654 | 8.132714e-49 | -8.615850e-47 |
| Msa0137010 | Msa0357960 | -0.820166 | 7.916657e-53 | -8.615850e-47 |
| Msa0357960 | Msa0464700 | 0.927775 | 7.341556e-92 | -8.615850e-47 |
| Msa0357960 | Msa0510150 | 0.918590 | 1.291079e-86 | -8.615850e-47 |
| Msa0357960 | Msa0827800 | 0.804508 | 2.088983e-49 | -8.615850e-47 |
| Msa0357960 | Msa1041060 | 0.803989 | 2.679400e-49 | -8.615850e-47 |
| Msa0357960 | Msa1273320 | 0.800405 | 1.463644e-48 | -8.615850e-47 |
| Msa0357960 | Msa1287100 | -0.818553 | 1.845707e-52 | -8.615850e-47 |
| Msa0357960 | Msa1405830 | 0.801204 | 1.005205e-48 | -8.615850e-47 |
| Msa0357960 | Msa1433570 | 0.804985 | 1.660891e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357960 | MtrunA17_Chr3g0116051 | 92.532 | 616 | 45 | 1 | 4 | 619 | 8 | 622 | 0.0 | 1210 |
| Msa0357960 | MtrunA17_Chr4g0057551 | 79.441 | 608 | 119 | 2 | 14 | 619 | 23 | 626 | 0.0 | 1041 |
| Msa0357960 | MtrunA17_Chr5g0419621 | 70.395 | 608 | 175 | 2 | 14 | 619 | 14 | 618 | 0.0 | 909 |
| Msa0357960 | MtrunA17_Chr8g0364481 | 69.106 | 615 | 183 | 2 | 5 | 619 | 4 | 611 | 0.0 | 909 |
| Msa0357960 | MtrunA17_Chr3g0116091 | 84.532 | 459 | 26 | 2 | 160 | 618 | 4 | 417 | 0.0 | 800 |
| Msa0357960 | MtrunA17_Chr3g0116071 | 75.235 | 319 | 10 | 2 | 156 | 474 | 4 | 253 | 7.34e-167 | 476 |
| Msa0357960 | MtrunA17_Chr4g0022251 | 34.797 | 615 | 327 | 20 | 38 | 600 | 42 | 634 | 4.55e-107 | 336 |
| Msa0357960 | MtrunA17_Chr3g0116081 | 97.778 | 135 | 3 | 0 | 486 | 620 | 1 | 135 | 6.00e-93 | 282 |
| Msa0357960 | MtrunA17_Chr1g0173511 | 36.989 | 465 | 257 | 14 | 132 | 574 | 34 | 484 | 1.18e-92 | 294 |
| Msa0357960 | MtrunA17_Chr4g0043001 | 28.454 | 608 | 352 | 23 | 42 | 598 | 5 | 580 | 1.83e-58 | 207 |
| Msa0357960 | MtrunA17_Chr4g0043021 | 28.289 | 608 | 356 | 22 | 40 | 598 | 4 | 580 | 2.10e-57 | 204 |
| Msa0357960 | MtrunA17_Chr7g0214261 | 95.455 | 66 | 3 | 0 | 196 | 261 | 6 | 71 | 3.82e-39 | 138 |
| Msa0357960 | MtrunA17_Chr1g0178831 | 27.229 | 415 | 228 | 15 | 189 | 593 | 57 | 407 | 8.38e-30 | 122 |
| Msa0357960 | MtrunA17_Chr7g0266131 | 25.908 | 413 | 228 | 15 | 189 | 589 | 65 | 411 | 3.60e-29 | 120 |
| Msa0357960 | MtrunA17_Chr4g0064541 | 26.190 | 462 | 277 | 16 | 160 | 602 | 35 | 451 | 7.41e-28 | 117 |
| Msa0357960 | MtrunA17_Chr7g0266151 | 25.791 | 411 | 232 | 13 | 189 | 589 | 58 | 405 | 1.29e-27 | 115 |
| Msa0357960 | MtrunA17_Chr3g0116061 | 84.746 | 59 | 8 | 1 | 4 | 62 | 8 | 65 | 2.70e-27 | 104 |
| Msa0357960 | MtrunA17_Chr3g0098721 | 26.218 | 431 | 246 | 14 | 189 | 613 | 54 | 418 | 2.16e-26 | 112 |
| Msa0357960 | MtrunA17_Chr6g0453731 | 27.053 | 414 | 186 | 15 | 246 | 589 | 146 | 513 | 1.27e-25 | 111 |
| Msa0357960 | MtrunA17_Chr5g0443881 | 24.390 | 451 | 263 | 18 | 173 | 613 | 42 | 424 | 1.23e-22 | 101 |
| Msa0357960 | MtrunA17_Chr7g0236041 | 25.352 | 426 | 202 | 13 | 246 | 600 | 146 | 526 | 2.09e-22 | 101 |
| Msa0357960 | MtrunA17_Chr3g0121411 | 24.186 | 430 | 202 | 14 | 246 | 600 | 147 | 527 | 6.04e-22 | 100 |
| Msa0357960 | MtrunA17_Chr3g0121431 | 23.944 | 426 | 208 | 14 | 246 | 600 | 202 | 582 | 6.81e-21 | 97.1 |
| Msa0357960 | MtrunA17_Chr1g0211041 | 24.122 | 427 | 242 | 19 | 190 | 590 | 70 | 440 | 2.87e-18 | 88.2 |
| Msa0357960 | MtrunA17_Chr4g0019091 | 24.793 | 363 | 218 | 15 | 246 | 590 | 113 | 438 | 4.47e-18 | 87.4 |
| Msa0357960 | MtrunA17_Chr4g0019071 | 25.321 | 312 | 186 | 12 | 301 | 595 | 39 | 320 | 1.12e-17 | 84.7 |
| Msa0357960 | MtrunA17_Chr6g0449981 | 93.103 | 29 | 2 | 0 | 232 | 260 | 1 | 29 | 2.18e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357960 | AT5G50400.1 | 73.322 | 611 | 157 | 3 | 9 | 619 | 6 | 610 | 0.0 | 947 |
| Msa0357960 | AT4G24890.1 | 72.287 | 599 | 163 | 2 | 21 | 619 | 19 | 614 | 0.0 | 924 |
| Msa0357960 | AT1G13750.1 | 66.504 | 615 | 203 | 1 | 5 | 619 | 1 | 612 | 0.0 | 876 |
| Msa0357960 | AT5G50400.2 | 78.824 | 510 | 107 | 1 | 110 | 619 | 30 | 538 | 0.0 | 863 |
| Msa0357960 | AT1G13900.1 | 29.734 | 602 | 322 | 26 | 50 | 598 | 24 | 577 | 8.99e-59 | 209 |
| Msa0357960 | AT2G03450.1 | 28.805 | 611 | 332 | 25 | 43 | 598 | 15 | 577 | 1.42e-57 | 205 |
| Msa0357960 | AT3G52780.1 | 26.218 | 431 | 244 | 15 | 172 | 589 | 36 | 405 | 1.88e-28 | 119 |
| Msa0357960 | AT3G52810.1 | 26.450 | 431 | 243 | 17 | 169 | 589 | 42 | 408 | 1.25e-27 | 116 |
| Msa0357960 | AT3G52820.1 | 26.728 | 434 | 248 | 18 | 162 | 589 | 35 | 404 | 4.14e-24 | 105 |
| Msa0357960 | AT3G20500.1 | 30.466 | 279 | 163 | 10 | 320 | 589 | 147 | 403 | 6.45e-24 | 105 |
| Msa0357960 | AT4G13700.1 | 26.970 | 330 | 171 | 11 | 246 | 547 | 140 | 427 | 6.99e-24 | 105 |
| Msa0357960 | AT2G27190.1 | 27.671 | 365 | 205 | 15 | 246 | 590 | 118 | 443 | 9.30e-23 | 102 |
| Msa0357960 | AT3G52780.2 | 27.507 | 349 | 198 | 12 | 172 | 513 | 36 | 336 | 1.66e-22 | 100 |
| Msa0357960 | AT5G34850.1 | 25.203 | 369 | 234 | 12 | 246 | 602 | 112 | 450 | 1.97e-22 | 101 |
| Msa0357960 | AT4G36350.1 | 24.044 | 366 | 218 | 13 | 246 | 591 | 114 | 439 | 1.45e-19 | 92.4 |
| Msa0357960 | AT3G07130.1 | 24.466 | 421 | 209 | 15 | 246 | 600 | 140 | 517 | 2.55e-19 | 92.0 |
| Msa0357960 | AT4G13700.2 | 26.804 | 291 | 153 | 10 | 246 | 508 | 140 | 398 | 5.71e-19 | 90.1 |
| Msa0357960 | AT1G56360.1 | 22.782 | 417 | 264 | 16 | 191 | 591 | 65 | 439 | 1.12e-18 | 89.7 |
| Msa0357960 | AT2G18130.1 | 25.714 | 280 | 179 | 10 | 338 | 602 | 168 | 433 | 4.59e-15 | 78.2 |
| Msa0357960 | AT2G32770.3 | 22.170 | 424 | 201 | 16 | 246 | 589 | 149 | 523 | 7.65e-15 | 78.2 |
| Msa0357960 | AT3G07130.2 | 22.676 | 441 | 225 | 16 | 246 | 600 | 140 | 550 | 1.03e-14 | 77.8 |
| Msa0357960 | AT2G32770.2 | 23.343 | 347 | 172 | 14 | 246 | 547 | 68 | 365 | 8.39e-13 | 71.2 |
Find 175 sgRNAs with CRISPR-Local
Find 525 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGTTTCATTTACCTTTAT+TGG | 0.162930 | 3_1:+42568802 | None:intergenic |
| TAGTAGTTATACCTGATAAA+TGG | 0.220072 | 3_1:+42565897 | None:intergenic |
| GAGTTTCATTTACCTTTATT+GGG | 0.220701 | 3_1:+42568803 | None:intergenic |
| TTTAGTGCACACCTCATATT+TGG | 0.221971 | 3_1:+42567642 | None:intergenic |
| CAGTCTTCATTAGTTGGTTC+TGG | 0.230728 | 3_1:+42570252 | None:intergenic |
| TACCTTACTGCCAAGCAAAA+AGG | 0.234836 | 3_1:+42572460 | None:intergenic |
| TAATATAACTCACCAGAATT+TGG | 0.238636 | 3_1:+42566842 | None:intergenic |
| TGAATCTGCTTTCCACCCTT+TGG | 0.258361 | 3_1:+42567877 | None:intergenic |
| TGCAGGTATGCCACAGATTA+TGG | 0.265751 | 3_1:-42566201 | Msa0357960:intron |
| TACTTCACCCTCTACTTAAA+AGG | 0.265821 | 3_1:+42572700 | None:intergenic |
| GCAAACCTTGCTATCATATA+TGG | 0.274739 | 3_1:+42567072 | None:intergenic |
| GAATCTGCTTTCCACCCTTT+GGG | 0.297542 | 3_1:+42567878 | None:intergenic |
| GGGAAAGTTTGCAGGGGCTT+TGG | 0.317516 | 3_1:-42565981 | Msa0357960:CDS |
| ATTATATTTCTACAAGTGTT+TGG | 0.318459 | 3_1:+42565145 | None:intergenic |
| AGAGACAAAGACTATGGTTT+TGG | 0.320936 | 3_1:-42565633 | Msa0357960:CDS |
| CATGGGAAGGGAAAGTTTGC+AGG | 0.323081 | 3_1:-42565989 | Msa0357960:CDS |
| TTCTATGACACTCCAGATTC+AGG | 0.324023 | 3_1:-42566921 | Msa0357960:CDS |
| CGCGGATACACAGGTGCTTT+AGG | 0.325055 | 3_1:+42568151 | None:intergenic |
| CTGCACGTTGATTGATCAAT+TGG | 0.331585 | 3_1:+42568626 | None:intergenic |
| CCCAGGTATGCCTATAGGTT+GGG | 0.335413 | 3_1:-42567544 | Msa0357960:intron |
| CCGCATTCTCCACCTGAATC+TGG | 0.338489 | 3_1:+42566909 | None:intergenic |
| TTGGGTGATATGAATGGATT+TGG | 0.345669 | 3_1:-42572560 | Msa0357960:CDS |
| AAGAGTATGCCCCATTTATC+AGG | 0.358857 | 3_1:-42565908 | Msa0357960:intron |
| TTGCAACGTGTTATCATATT+CGG | 0.359394 | 3_1:-42567442 | Msa0357960:CDS |
| CACCAACTTGAGGATCTGTT+TGG | 0.360863 | 3_1:-42572579 | Msa0357960:CDS |
| AGTAGTTATACCTGATAAAT+GGG | 0.363474 | 3_1:+42565898 | None:intergenic |
| AGTCTTCATTAGTTGGTTCT+GGG | 0.366107 | 3_1:+42570253 | None:intergenic |
| CGTCCAATGCCACCGGGGTT+GGG | 0.366293 | 3_1:+42568853 | None:intergenic |
| ACCGTTGGCTGGCGCGATCC+TGG | 0.370934 | 3_1:-42567699 | Msa0357960:CDS |
| GGCATACTCTTTCGTAGTTA+TGG | 0.374674 | 3_1:+42565920 | None:intergenic |
| ACGATTAAATGTCAATGTTC+CGG | 0.375358 | 3_1:+42567846 | None:intergenic |
| CTGCAAACTTTCCCTTCCCA+TGG | 0.377219 | 3_1:+42565990 | None:intergenic |
| CATTATTCTGGCACTGTGAA+TGG | 0.377604 | 3_1:-42565735 | Msa0357960:CDS |
| TCACCACAGCACCTCCTGTT+TGG | 0.380045 | 3_1:-42565665 | Msa0357960:CDS |
| AGCTGTACCATTTGTTGAAT+GGG | 0.384608 | 3_1:-42567902 | Msa0357960:CDS |
| GTATGTTACTTGAAGTTTGC+AGG | 0.390132 | 3_1:+42570213 | None:intergenic |
| CAGGTTTCCTTGAAGAACTT+TGG | 0.392296 | 3_1:-42567665 | Msa0357960:CDS |
| CCGTCCAATGCCACCGGGGT+TGG | 0.396303 | 3_1:+42568852 | None:intergenic |
| AGGTAAGTTAAACATGAGTT+TGG | 0.397660 | 3_1:-42572621 | Msa0357960:CDS |
| CTGAGAACAAAGCCAAATTC+TGG | 0.397715 | 3_1:-42566854 | Msa0357960:intron |
| AGAATGGGTGACAGTAAAAC+TGG | 0.399637 | 3_1:-42570280 | Msa0357960:CDS |
| CATGTTGTTGTTGGTGGAGG+GGG | 0.399824 | 3_1:-42565705 | Msa0357960:CDS |
| TGTCTGATGGCTCTTATGTA+TGG | 0.401100 | 3_1:-42567513 | Msa0357960:CDS |
| CATATGCTCAGCCCCAATAA+AGG | 0.402084 | 3_1:-42568815 | Msa0357960:intron |
| TCATAGAAGGATCCTGAGTT+TGG | 0.403373 | 3_1:+42566936 | None:intergenic |
| CAATAAATGCCCCAACCTAT+AGG | 0.409184 | 3_1:+42567534 | None:intergenic |
| TCTTCCCCAGGTATGCCTAT+AGG | 0.409972 | 3_1:-42567549 | Msa0357960:intron |
| TTATATTTCTACAAGTGTTT+GGG | 0.414076 | 3_1:+42565146 | None:intergenic |
| TCTACTTAAAAGGCTCTTGA+TGG | 0.417134 | 3_1:+42572710 | None:intergenic |
| CCAACCCAGTCTTCATTAGT+TGG | 0.419485 | 3_1:+42570246 | None:intergenic |
| ATCTCTATAGTCCCTGGAAA+TGG | 0.436173 | 3_1:+42565530 | None:intergenic |
| TTCAAGGCATCTCCTTATCC+TGG | 0.438321 | 3_1:-42567475 | Msa0357960:CDS |
| AAGAACTTTGGCCAAATATG+AGG | 0.438770 | 3_1:-42567653 | Msa0357960:intron |
| AATTTGGCTTTGTTCTCAGC+AGG | 0.439009 | 3_1:+42566858 | None:intergenic |
| CTTGGCATACCAATCATTAG+AGG | 0.440011 | 3_1:+42566032 | None:intergenic |
| CCACCCAACCCCGGTGGCAT+TGG | 0.440027 | 3_1:-42568856 | Msa0357960:CDS |
| AACCTGCGCGAACCGTTGGC+TGG | 0.449374 | 3_1:-42567710 | Msa0357960:CDS |
| TGAATCTGGAGTGTCATAGA+AGG | 0.450964 | 3_1:+42566923 | None:intergenic |
| CTCTTCAAATGAACCCTCCT+TGG | 0.453099 | 3_1:+42566014 | None:intergenic |
| TTTGGGCCCCATTCAACAAA+TGG | 0.461006 | 3_1:+42567895 | None:intergenic |
| ACCAACTTGAGGATCTGTTT+GGG | 0.461280 | 3_1:-42572578 | Msa0357960:CDS |
| TATTTGGCCAAAGTTCTTCA+AGG | 0.461537 | 3_1:+42567658 | None:intergenic |
| GGAACAATTCATGTTGTTGT+TGG | 0.462326 | 3_1:-42565714 | Msa0357960:CDS |
| CCCCAGGTATGCCTATAGGT+TGG | 0.462368 | 3_1:-42567545 | Msa0357960:intron |
| GTGGAAATCACGAACGCTCT+TGG | 0.464456 | 3_1:-42566959 | Msa0357960:CDS |
| CTCAGCAGGGTAATAGTACA+TGG | 0.467918 | 3_1:+42566872 | None:intergenic |
| ATCTGTTTGGGTGATATGAA+TGG | 0.471658 | 3_1:-42572566 | Msa0357960:CDS |
| ATTCATGTTGTTGTTGGTGG+AGG | 0.474320 | 3_1:-42565708 | Msa0357960:CDS |
| TTGGGGCATTTATTGTCTGA+TGG | 0.475270 | 3_1:-42567526 | Msa0357960:CDS |
| TCTCTGAAAATACTCCAAAC+AGG | 0.481381 | 3_1:+42565651 | None:intergenic |
| CAGGGACTATAGAGATGTCT+TGG | 0.482107 | 3_1:-42565523 | Msa0357960:CDS |
| GTATTTAGGATTGGAGTGGT+TGG | 0.482977 | 3_1:+42568678 | None:intergenic |
| GTGTATCCGCGCCTTGCTCA+TGG | 0.485506 | 3_1:-42568139 | Msa0357960:CDS |
| AAGCTGTACCATTTGTTGAA+TGG | 0.486572 | 3_1:-42567903 | Msa0357960:CDS |
| TTCATGTTGTTGTTGGTGGA+GGG | 0.486891 | 3_1:-42565707 | Msa0357960:CDS |
| TTTGAAACTGCAACAAGCTT+AGG | 0.488913 | 3_1:+42568193 | None:intergenic |
| TCGGTTACTCCTCTAATGAT+TGG | 0.490311 | 3_1:-42566041 | Msa0357960:CDS |
| TGTCTAAATCCTTGATGAGC+TGG | 0.492936 | 3_1:+42567199 | None:intergenic |
| ATCTACCCGTCCAATGCCAC+CGG | 0.493173 | 3_1:+42568846 | None:intergenic |
| GCTCTTATGTATGGAGTAAG+AGG | 0.494084 | 3_1:-42567504 | Msa0357960:CDS |
| ACAATTCATGTTGTTGTTGG+TGG | 0.495571 | 3_1:-42565711 | Msa0357960:CDS |
| CAGAACCAACTAATGAAGAC+TGG | 0.498767 | 3_1:-42570251 | Msa0357960:CDS |
| CGCCAGCCAACGGTTCGCGC+AGG | 0.499949 | 3_1:+42567708 | None:intergenic |
| TGCAAACTTTCCCTTCCCAT+GGG | 0.500947 | 3_1:+42565991 | None:intergenic |
| ATTGGGGCTGAGCATATGAA+TGG | 0.502132 | 3_1:+42568820 | None:intergenic |
| AGAATCATGGATCGCAAGAA+TGG | 0.504874 | 3_1:+42572502 | None:intergenic |
| GGAGATCTGCCATATGCAAA+TGG | 0.505321 | 3_1:-42567153 | Msa0357960:CDS |
| TTTGTTGAATGGGGCCCAAA+GGG | 0.507205 | 3_1:-42567892 | Msa0357960:CDS |
| AGTTTCATTTACCTTTATTG+GGG | 0.515764 | 3_1:+42568804 | None:intergenic |
| CCAACCCCGGTGGCATTGGA+CGG | 0.516793 | 3_1:-42568852 | Msa0357960:CDS |
| CAGTAATGGAGGCAGAATCA+TGG | 0.518657 | 3_1:+42572489 | None:intergenic |
| GAGTAAGAGGTATTCATTCA+AGG | 0.520098 | 3_1:-42567491 | Msa0357960:CDS |
| GGTCAACCTGCGCGAACCGT+TGG | 0.521129 | 3_1:-42567714 | Msa0357960:CDS |
| CCAGGTATGCCTATAGGTTG+GGG | 0.525499 | 3_1:-42567543 | Msa0357960:intron |
| CAACCCCGGTGGCATTGGAC+GGG | 0.532592 | 3_1:-42568851 | Msa0357960:CDS |
| TGAGCAAGGCGCGGATACAC+AGG | 0.538957 | 3_1:+42568142 | None:intergenic |
| GAACGCTCTTGGCCAAACTC+AGG | 0.539098 | 3_1:-42566948 | Msa0357960:CDS |
| CAAGAAAAGTAGTGATGGAA+AGG | 0.542299 | 3_1:-42565568 | Msa0357960:CDS |
| GTCCTTTAGGCTGAGCGTGA+TGG | 0.547365 | 3_1:-42567270 | Msa0357960:intron |
| GTCTTCATTAGTTGGTTCTG+GGG | 0.549003 | 3_1:+42570254 | None:intergenic |
| TCCAAGACTTTCCATGAGCA+AGG | 0.549311 | 3_1:+42568128 | None:intergenic |
| TCATGTTGTTGTTGGTGGAG+GGG | 0.552640 | 3_1:-42565706 | Msa0357960:CDS |
| TATGACAGATGACAGTTACC+TGG | 0.552868 | 3_1:-42567948 | Msa0357960:intron |
| TGTTATCATATTCGGTGACA+TGG | 0.552892 | 3_1:-42567434 | Msa0357960:CDS |
| CCAATGCCACCGGGGTTGGG+TGG | 0.553233 | 3_1:+42568856 | None:intergenic |
| GGGTTCATTTGAAGAGCCCA+TGG | 0.554005 | 3_1:-42566007 | Msa0357960:CDS |
| CTCTAATGATTGGTATGCCA+AGG | 0.554950 | 3_1:-42566031 | Msa0357960:CDS |
| TCTACCCGTCCAATGCCACC+GGG | 0.555257 | 3_1:+42568847 | None:intergenic |
| ATTTGTTGAATGGGGCCCAA+AGG | 0.559998 | 3_1:-42567893 | Msa0357960:CDS |
| TAGCAGACACTGAACATGAC+TGG | 0.560714 | 3_1:-42566161 | Msa0357960:CDS |
| GCAGGGCGAGGATACAGAAT+GGG | 0.561327 | 3_1:-42570295 | Msa0357960:intron |
| TATGTCATATCCACTTGTCC+AGG | 0.562397 | 3_1:+42567930 | None:intergenic |
| GCCTCTTCATCACCAACTTG+AGG | 0.562952 | 3_1:-42572589 | Msa0357960:CDS |
| TCCTCAAGTTGGTGATGAAG+AGG | 0.564410 | 3_1:+42572588 | None:intergenic |
| ATTTGAAGAGCCCATGGGAA+GGG | 0.565074 | 3_1:-42566001 | Msa0357960:CDS |
| GAGATGTATCCATTTGCATA+TGG | 0.566529 | 3_1:+42567144 | None:intergenic |
| CAAGACATCTCTATAGTCCC+TGG | 0.567071 | 3_1:+42565524 | None:intergenic |
| ACTTAAAAGGCTCTTGATGG+AGG | 0.570667 | 3_1:+42572713 | None:intergenic |
| GAATATGCTAATTATCAACC+TGG | 0.571971 | 3_1:-42567240 | Msa0357960:CDS |
| CAGTTCCATATATGATAGCA+AGG | 0.575743 | 3_1:-42567077 | Msa0357960:intron |
| ACTGAACATGACTGGAGAGA+AGG | 0.580541 | 3_1:-42566153 | Msa0357960:CDS |
| CACCACTGACCAGCTCATCA+AGG | 0.584625 | 3_1:-42567208 | Msa0357960:CDS |
| ACCAGGATCGCGCCAGCCAA+CGG | 0.585321 | 3_1:+42567698 | None:intergenic |
| GAGTACAAGAAAAGTAGTGA+TGG | 0.585752 | 3_1:-42565573 | Msa0357960:CDS |
| TGCAGGGCGAGGATACAGAA+TGG | 0.587032 | 3_1:-42570296 | Msa0357960:intron |
| CTTAAAAGGCTCTTGATGGA+GGG | 0.587065 | 3_1:+42572714 | None:intergenic |
| CATATTCGGTGACATGGGAA+AGG | 0.587852 | 3_1:-42567428 | Msa0357960:intron |
| ATGACAGTTACCTGGACAAG+TGG | 0.589057 | 3_1:-42567940 | Msa0357960:CDS |
| ACCCAAACAGATCCTCAAGT+TGG | 0.593043 | 3_1:+42572577 | None:intergenic |
| ATGGGAAGGGAAAGTTTGCA+GGG | 0.596275 | 3_1:-42565988 | Msa0357960:CDS |
| CCAACTAATGAAGACTGGGT+TGG | 0.597652 | 3_1:-42570246 | Msa0357960:CDS |
| AAGCAGATTCAATCTGCTGC+CGG | 0.597918 | 3_1:-42567865 | Msa0357960:CDS |
| TAATAGTACATGGTTTCCGC+AGG | 0.601045 | 3_1:+42566882 | None:intergenic |
| TCCACCTGAAAATAGTGCAA+AGG | 0.604263 | 3_1:+42568597 | None:intergenic |
| GTTGAATGGGGCCCAAAGGG+TGG | 0.605971 | 3_1:-42567889 | Msa0357960:CDS |
| TTTGCAGCACATCGCCCACT+CGG | 0.606514 | 3_1:-42566060 | Msa0357960:CDS |
| TGAATGGCAATCTTTGAAAG+TGG | 0.607314 | 3_1:+42572530 | None:intergenic |
| CATTTGAAGAGCCCATGGGA+AGG | 0.608262 | 3_1:-42566002 | Msa0357960:CDS |
| CATATGGCAGATCTCCTATG+TGG | 0.608314 | 3_1:+42567160 | None:intergenic |
| GCCTTGCTCATGGAAAGTCT+TGG | 0.610045 | 3_1:-42568129 | Msa0357960:CDS |
| AAACCTGTGTGTATAAAACC+AGG | 0.612380 | 3_1:+42567681 | None:intergenic |
| TGGAGAATGCGGAGTTCCTG+CGG | 0.615859 | 3_1:-42566898 | Msa0357960:CDS |
| GTTATCATATTCGGTGACAT+GGG | 0.619175 | 3_1:-42567433 | Msa0357960:CDS |
| ACATGACTGGAGAGAAGGAT+CGG | 0.620114 | 3_1:-42566148 | Msa0357960:CDS |
| CCAGATTCAGGTGGAGAATG+CGG | 0.625344 | 3_1:-42566909 | Msa0357960:CDS |
| AATGATTGGTATGCCAAGGA+GGG | 0.625443 | 3_1:-42566027 | Msa0357960:CDS |
| ATTTGGCTTTGTTCTCAGCA+GGG | 0.626371 | 3_1:+42566859 | None:intergenic |
| CTCACAACCATCGTGCACAC+AGG | 0.626678 | 3_1:+42565500 | None:intergenic |
| ACTCCAAACAGGAGGTGCTG+TGG | 0.627083 | 3_1:+42565662 | None:intergenic |
| TAATGATTGGTATGCCAAGG+AGG | 0.627561 | 3_1:-42566028 | Msa0357960:CDS |
| AGAACCAACTAATGAAGACT+GGG | 0.631293 | 3_1:-42570250 | Msa0357960:CDS |
| ATCCTTGATGAGCTGGTCAG+TGG | 0.633150 | 3_1:+42567206 | None:intergenic |
| GGTTCATTTGAAGAGCCCAT+GGG | 0.633987 | 3_1:-42566006 | Msa0357960:CDS |
| GACTTTCCATGAGCAAGGCG+CGG | 0.635264 | 3_1:+42568133 | None:intergenic |
| TCAGTGGTGTTAAGTGAACC+AGG | 0.637131 | 3_1:+42567222 | None:intergenic |
| TTTAATCGTAACAGCATGTG+TGG | 0.639129 | 3_1:-42567832 | Msa0357960:intron |
| TCAACATGTCCACCCAACCC+CGG | 0.639236 | 3_1:-42568865 | Msa0357960:CDS |
| TATGACACTCCAGATTCAGG+TGG | 0.641435 | 3_1:-42566918 | Msa0357960:CDS |
| CATAATTCAGAGTGCCAAGG+TGG | 0.647479 | 3_1:+42565473 | None:intergenic |
| GCTGTACCATTTGTTGAATG+GGG | 0.649227 | 3_1:-42567901 | Msa0357960:CDS |
| ACGAAACATGCCATAATCTG+TGG | 0.650821 | 3_1:+42566191 | None:intergenic |
| TAGATAGAAAACAACAACCA+TGG | 0.654457 | 3_1:-42566089 | Msa0357960:CDS |
| AAATGGATACATCTCACAGT+GGG | 0.656289 | 3_1:-42567136 | Msa0357960:CDS |
| CTACATAATTCAGAGTGCCA+AGG | 0.658085 | 3_1:+42565470 | None:intergenic |
| GTCTTGGCCTGTGTGCACGA+TGG | 0.663436 | 3_1:-42565507 | Msa0357960:CDS |
| GTAGTTATACCTGATAAATG+GGG | 0.675933 | 3_1:+42565899 | None:intergenic |
| CATTAGAGGAGTAACCGAGT+GGG | 0.692825 | 3_1:+42566046 | None:intergenic |
| CTGAAAATACTCCAAACAGG+AGG | 0.700173 | 3_1:+42565654 | None:intergenic |
| TGGGAAGGGAAAGTTTGCAG+GGG | 0.702638 | 3_1:-42565987 | Msa0357960:CDS |
| TCATTAGAGGAGTAACCGAG+TGG | 0.714971 | 3_1:+42566045 | None:intergenic |
| TGGTTGTGAGAAAACCACCT+TGG | 0.719747 | 3_1:-42565487 | Msa0357960:CDS |
| ACATGTCCACCCAACCCCGG+TGG | 0.724016 | 3_1:-42568862 | Msa0357960:CDS |
| CTACCCGTCCAATGCCACCG+GGG | 0.725369 | 3_1:+42568848 | None:intergenic |
| CAAATGGATACATCTCACAG+TGG | 0.732996 | 3_1:-42567137 | Msa0357960:CDS |
| TGTGCTGCAAAGATTAACCA+TGG | 0.735965 | 3_1:+42566072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTATATCAATATATAA+AGG | + | chr3_1:42565767-42565786 | None:intergenic | 10.0% |
| !!! | GTTTTTTTGAATTTATTTAA+CGG | + | chr3_1:42567432-42567451 | None:intergenic | 10.0% |
| !!! | GTTTTTTTGAATTTATTTAA+CGG | - | chr3_1:42567432-42567451 | Msa0357960:CDS | 10.0% |
| !!! | AAATTTTGAACTTATTTTTT+GGG | - | chr3_1:42568329-42568348 | Msa0357960:intron | 10.0% |
| !!! | ATATAACAAAATATTTTGAA+AGG | - | chr3_1:42568556-42568575 | Msa0357960:intron | 10.0% |
| !!! | TATAACAAAATATTTTGAAA+GGG | - | chr3_1:42568557-42568576 | Msa0357960:intron | 10.0% |
| !! | AATTTAAAAAATTGTATTGA+AGG | - | chr3_1:42568662-42568681 | Msa0357960:CDS | 10.0% |
| !!! | TTTAATTTTTTTTTTAAGGA+AGG | - | chr3_1:42568728-42568747 | Msa0357960:intron | 10.0% |
| !!! | ATTTTTAGAAAAAGATAATA+AGG | + | chr3_1:42570119-42570138 | None:intergenic | 10.0% |
| !! | TTATTTAATGTTTATAACAT+TGG | - | chr3_1:42570497-42570516 | Msa0357960:intron | 10.0% |
| !!! | ATAACTTTTCATTTAAACAA+TGG | - | chr3_1:42565248-42565267 | Msa0357960:intron | 15.0% |
| !! | AATAGGTTAAATTAATGAAA+CGG | + | chr3_1:42565471-42565490 | None:intergenic | 15.0% |
| !! | AATTAAGTGAAATGTTAAAT+TGG | - | chr3_1:42565571-42565590 | Msa0357960:CDS | 15.0% |
| !!! | AATGAATTACTTAACTATTT+TGG | + | chr3_1:42565613-42565632 | None:intergenic | 15.0% |
| !!! | TAATGAAATTTAGTTTTTTG+AGG | - | chr3_1:42565839-42565858 | Msa0357960:intron | 15.0% |
| !!! | AATGAAATTTAGTTTTTTGA+GGG | - | chr3_1:42565840-42565859 | Msa0357960:intron | 15.0% |
| !!! | TCATAAATCTTTTATATGTT+CGG | - | chr3_1:42566279-42566298 | Msa0357960:intron | 15.0% |
| !!! | TCCTGTTTTTAATATTTTAT+AGG | - | chr3_1:42566353-42566372 | Msa0357960:intron | 15.0% |
| !! | GATATCAAATAAATAGTTAA+GGG | + | chr3_1:42566397-42566416 | None:intergenic | 15.0% |
| !!! | ACAATCTTTTTTTTAGTTAA+GGG | + | chr3_1:42567498-42567517 | None:intergenic | 15.0% |
| !!! | AACAATCTTTTTTTTAGTTA+AGG | + | chr3_1:42567497-42567516 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAAAGATTGTTT+TGG | - | chr3_1:42566430-42566449 | Msa0357960:intron | 15.0% |
| !! | AATAAATTCAAAAAAACGTT+AGG | - | chr3_1:42566497-42566516 | Msa0357960:intron | 15.0% |
| !! | ATAAATTCAAAAAAACGTTA+GGG | - | chr3_1:42566498-42566517 | Msa0357960:intron | 15.0% |
| !! | GATACCAAATAAATATTTAA+GGG | - | chr3_1:42566614-42566633 | Msa0357960:intron | 15.0% |
| !!! | GCTATTTTTTAGTTTTTTTT+TGG | - | chr3_1:42567187-42567206 | Msa0357960:CDS | 15.0% |
| !! | GATACCAAATAAATAATTAA+GGG | + | chr3_1:42567303-42567322 | None:intergenic | 15.0% |
| !! | ATAAATTCAAAAAAACGTTA+GGG | + | chr3_1:42566498-42566517 | None:intergenic | 15.0% |
| !! | AATAAATTCAAAAAAACGTT+AGG | + | chr3_1:42566497-42566516 | None:intergenic | 15.0% |
| !!! | AACAATCTTTTTTTTAGTTA+AGG | - | chr3_1:42567497-42567516 | Msa0357960:CDS | 15.0% |
| !!! | ACAATCTTTTTTTTAGTTAA+GGG | - | chr3_1:42567498-42567517 | Msa0357960:CDS | 15.0% |
| !! | CAAAAAATAAGTTCAAAATT+TGG | + | chr3_1:42568330-42568349 | None:intergenic | 15.0% |
| !!! | CAAATTTTGAACTTATTTTT+TGG | - | chr3_1:42568328-42568347 | Msa0357960:intron | 15.0% |
| !!! | ATAACAAAATATTTTGAAAG+GGG | - | chr3_1:42568558-42568577 | Msa0357960:intron | 15.0% |
| !!! | TATTTCTATAATTTCATTGT+TGG | - | chr3_1:42571192-42571211 | Msa0357960:intron | 15.0% |
| !! | TTACAAATATTCTTTATAAG+AGG | + | chr3_1:42572525-42572544 | None:intergenic | 15.0% |
| !! | TCTTATAAAGAATATTTGTA+AGG | - | chr3_1:42572524-42572543 | Msa0357960:CDS | 15.0% |
| !! | TTCCTATATATAGAGAAAAA+CGG | + | chr3_1:42565157-42565176 | None:intergenic | 20.0% |
| !! | ATAGGTTAAATTAATGAAAC+GGG | + | chr3_1:42565470-42565489 | None:intergenic | 20.0% |
| !! | AGTAAGTTTGTATCAAAAAA+TGG | + | chr3_1:42565693-42565712 | None:intergenic | 20.0% |
| !! | CTATATCAATATATAAAGGA+AGG | + | chr3_1:42565763-42565782 | None:intergenic | 20.0% |
| !!! | ATGAAATTTAGTTTTTTGAG+GGG | - | chr3_1:42565841-42565860 | Msa0357960:intron | 20.0% |
| !! | GCCTATAAAATATTAAAAAC+AGG | + | chr3_1:42566357-42566376 | None:intergenic | 20.0% |
| !! | CGATATCAAATAAATAGTTA+AGG | + | chr3_1:42566398-42566417 | None:intergenic | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+GGG | + | chr3_1:42567437-42567456 | None:intergenic | 20.0% |
| !!! | TTTTGAATTTATTTAACGGA+AGG | + | chr3_1:42567436-42567455 | None:intergenic | 20.0% |
| !!! | ATATTTATTTGGTATCGTTT+TGG | + | chr3_1:42566610-42566629 | None:intergenic | 20.0% |
| !! | CGATACCAAATAAATATTTA+AGG | - | chr3_1:42566613-42566632 | Msa0357960:intron | 20.0% |
| !! | TGATCCCTTAAATATTTATT+TGG | + | chr3_1:42566621-42566640 | None:intergenic | 20.0% |
| !!! | ATTCTGTGTTTTTTTTTTTC+TGG | + | chr3_1:42566715-42566734 | None:intergenic | 20.0% |
| !!! | TTTTCTGTGTTTTTTTTTTC+TGG | - | chr3_1:42567214-42567233 | Msa0357960:CDS | 20.0% |
| !!! | GAAAAACTTAAATGTTCTTT+TGG | - | chr3_1:42567276-42567295 | Msa0357960:intron | 20.0% |
| !! | CGATACCAAATAAATAATTA+AGG | + | chr3_1:42567304-42567323 | None:intergenic | 20.0% |
| !!! | TTATTTATTTGGTATCGTTT+TGG | - | chr3_1:42567307-42567326 | Msa0357960:intron | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+AGG | - | chr3_1:42567437-42567456 | Msa0357960:CDS | 20.0% |
| !! | GATACCAAATAAATAGTTAA+GGG | - | chr3_1:42567529-42567548 | Msa0357960:CDS | 20.0% |
| !! | TATGAGTACAACTATAAAAT+AGG | + | chr3_1:42567573-42567592 | None:intergenic | 20.0% |
| !!! | GAATTTTGTATGAATCATAT+TGG | - | chr3_1:42567801-42567820 | Msa0357960:intron | 20.0% |
| !! | AAAAAAAATGAAGAATGAAG+TGG | - | chr3_1:42568533-42568552 | Msa0357960:intron | 20.0% |
| !! | TAATAGCACTAGTATATAAA+GGG | + | chr3_1:42569619-42569638 | None:intergenic | 20.0% |
| !! | ATGTATAATTAGGAAATGTT+AGG | + | chr3_1:42569833-42569852 | None:intergenic | 20.0% |
| !! | AACATTTCCTAATTATACAT+TGG | - | chr3_1:42569833-42569852 | Msa0357960:intron | 20.0% |
| !! | ATAAGAACCAATGTATAATT+AGG | + | chr3_1:42569843-42569862 | None:intergenic | 20.0% |
| !!! | AGAGTTTTTAGATAAAAAGT+TGG | + | chr3_1:42570552-42570571 | None:intergenic | 20.0% |
| !! | AAACTCAATTCAAATTTCTA+TGG | + | chr3_1:42570867-42570886 | None:intergenic | 20.0% |
| !! | AAAGAAAAATCTCATTATTC+TGG | - | chr3_1:42572146-42572165 | Msa0357960:intron | 20.0% |
| !! | AATAACAGTTATTATGTGTT+AGG | - | chr3_1:42572499-42572518 | Msa0357960:CDS | 20.0% |
| ! | TCCTATATATAGAGAAAAAC+GGG | + | chr3_1:42565156-42565175 | None:intergenic | 25.0% |
| !!! | GAAAACTTTTGTTTTCACAA+AGG | - | chr3_1:42565218-42565237 | Msa0357960:three_prime_UTR | 25.0% |
| !! | CTTTTCATTTAAACAATGGA+AGG | - | chr3_1:42565252-42565271 | Msa0357960:intron | 25.0% |
| ! | TAGGTTAAATTAATGAAACG+GGG | + | chr3_1:42565469-42565488 | None:intergenic | 25.0% |
| ! | CTAGTGAGAACAAAATAAAT+AGG | + | chr3_1:42565488-42565507 | None:intergenic | 25.0% |
| ! | TCATTCATTGCTAATAAAAG+TGG | + | chr3_1:42565535-42565554 | None:intergenic | 25.0% |
| !!! | TTTCTGTTTTGTTTTGTTGA+GGG | + | chr3_1:42565898-42565917 | None:intergenic | 25.0% |
| !!! | TTTTCTGTTTTGTTTTGTTG+AGG | + | chr3_1:42565899-42565918 | None:intergenic | 25.0% |
| ! | AAATAGTTTAATAGCCTGTT+TGG | - | chr3_1:42566095-42566114 | Msa0357960:CDS | 25.0% |
| ! | TTTAAGCTTCCTAAAAATCA+CGG | + | chr3_1:42566164-42566183 | None:intergenic | 25.0% |
| ! | CTATTTATTTGATATCGCTT+TGG | - | chr3_1:42566401-42566420 | Msa0357960:intron | 25.0% |
| ! | CTCAAATCAAAACTCATATT+TGG | - | chr3_1:42566764-42566783 | Msa0357960:intron | 25.0% |
| ! | CTCAAATCAAAACTCAAATT+TGG | - | chr3_1:42566827-42566846 | Msa0357960:intron | 25.0% |
| ! | AACAAAGGATTACTTAAAGA+AGG | - | chr3_1:42567108-42567127 | Msa0357960:CDS | 25.0% |
| ! | TGGTCCCTTAATTATTTATT+TGG | - | chr3_1:42567296-42567315 | Msa0357960:intron | 25.0% |
| ! | CGATACCAAATAAATAGTTA+AGG | - | chr3_1:42567528-42567547 | Msa0357960:CDS | 25.0% |
| !! | TGAAAAAGTACATTGACAAT+AGG | - | chr3_1:42567851-42567870 | Msa0357960:CDS | 25.0% |
| !! | TTCTCTCTCTGTTTTATAAT+TGG | - | chr3_1:42567897-42567916 | Msa0357960:CDS | 25.0% |
| ! | AATGTGATTTAAGTCATGTT+GGG | - | chr3_1:42568173-42568192 | Msa0357960:CDS | 25.0% |
| !!! | AGTATTTTAGGAAGTTTGAT+TGG | - | chr3_1:42568228-42568247 | Msa0357960:intron | 25.0% |
| !!! | GTATTTTAGGAAGTTTGATT+GGG | - | chr3_1:42568229-42568248 | Msa0357960:intron | 25.0% |
| ! | CATTGGATAAATTGGATTTA+AGG | + | chr3_1:42568432-42568451 | None:intergenic | 25.0% |
| !!! | TAGGAGTTTATTTTTCTTCA+TGG | - | chr3_1:42568587-42568606 | Msa0357960:intron | 25.0% |
| !!! | GACAAAAACAAGTTTTAAGT+TGG | + | chr3_1:42568625-42568644 | None:intergenic | 25.0% |
| !! | ATTGTATTGAAGGATGATTT+TGG | - | chr3_1:42568672-42568691 | Msa0357960:CDS | 25.0% |
| ! | TGAGATATATGCATAGTTTA+TGG | + | chr3_1:42568954-42568973 | None:intergenic | 25.0% |
| ! | ATGCATATATCTCACTATTA+TGG | - | chr3_1:42568960-42568979 | Msa0357960:intron | 25.0% |
| ! | AGTTTCATTTACCTTTATTG+GGG | + | chr3_1:42569092-42569111 | None:intergenic | 25.0% |
| ! | GAGTTTCATTTACCTTTATT+GGG | + | chr3_1:42569093-42569112 | None:intergenic | 25.0% |
| ! | CATACACAATTTATATGAGA+TGG | + | chr3_1:42569115-42569134 | None:intergenic | 25.0% |
| ! | AATGAATGAACAACATAACA+AGG | - | chr3_1:42569136-42569155 | Msa0357960:intron | 25.0% |
| !!! | AGTCTTTTTGTATTTAGGAT+TGG | + | chr3_1:42569227-42569246 | None:intergenic | 25.0% |
| ! | AATCCTAAATACAAAAAGAC+TGG | - | chr3_1:42569226-42569245 | Msa0357960:intron | 25.0% |
| ! | ATCCTAAATACAAAAAGACT+GGG | - | chr3_1:42569227-42569246 | Msa0357960:intron | 25.0% |
| ! | AATAGCACTAGTATATAAAG+GGG | + | chr3_1:42569618-42569637 | None:intergenic | 25.0% |
| ! | CTAATAGCACTAGTATATAA+AGG | + | chr3_1:42569620-42569639 | None:intergenic | 25.0% |
| ! | TGTTAGCATACAATTGAATA+AGG | + | chr3_1:42569654-42569673 | None:intergenic | 25.0% |
| ! | AGTTGGAAAATTATCTAGTT+AGG | + | chr3_1:42570535-42570554 | None:intergenic | 25.0% |
| !! | ACATATTCTTTTAGACTGAA+AGG | - | chr3_1:42570888-42570907 | Msa0357960:intron | 25.0% |
| ! | TAATATAACTCACCAGAATT+TGG | + | chr3_1:42571054-42571073 | None:intergenic | 25.0% |
| ! | TATTAATGCTAAACATGTCA+TGG | + | chr3_1:42571090-42571109 | None:intergenic | 25.0% |
| !!! | TGTGTTGATTTTTGAAAGAA+TGG | - | chr3_1:42571230-42571249 | Msa0357960:intron | 25.0% |
| ! | ACAACATAGAAGCTATTTAT+AGG | - | chr3_1:42571397-42571416 | Msa0357960:intron | 25.0% |
| !! | ATTTTCATCCTTATAGTTCA+TGG | - | chr3_1:42571578-42571597 | Msa0357960:intron | 25.0% |
| ! | TTGCAAGTGAAAAATAAACT+AGG | - | chr3_1:42571624-42571643 | Msa0357960:intron | 25.0% |
| !! | TTTTCGTCATTAATTAGGAA+TGG | + | chr3_1:42571663-42571682 | None:intergenic | 25.0% |
| ! | TCCTAATTAATGACGAAAAT+TGG | - | chr3_1:42571664-42571683 | Msa0357960:intron | 25.0% |
| !! | TCCAATTTTCGTCATTAATT+AGG | + | chr3_1:42571668-42571687 | None:intergenic | 25.0% |
| !! | AAAGTAGACATTGCATTTTA+TGG | - | chr3_1:42571944-42571963 | Msa0357960:intron | 25.0% |
| ! | AGTAGTTATACCTGATAAAT+GGG | + | chr3_1:42571998-42572017 | None:intergenic | 25.0% |
| ! | TAGTAGTTATACCTGATAAA+TGG | + | chr3_1:42571999-42572018 | None:intergenic | 25.0% |
| ! | CACATTTGGATAATTAGAAA+TGG | + | chr3_1:42572101-42572120 | None:intergenic | 25.0% |
| !! | ATTTTTCTTTATTCACGCAT+TGG | + | chr3_1:42572136-42572155 | None:intergenic | 25.0% |
| ! | TTGAACATAATGATAGAATC+TGG | + | chr3_1:42572668-42572687 | None:intergenic | 25.0% |
| CCTATATATAGAGAAAAACG+GGG | + | chr3_1:42565155-42565174 | None:intergenic | 30.0% | |
| AGGTAAGTTAAACATGAGTT+TGG | - | chr3_1:42565272-42565291 | Msa0357960:intron | 30.0% | |
| ACACTTTAACCAATATCTCA+AGG | - | chr3_1:42565720-42565739 | Msa0357960:CDS | 30.0% | |
| CACTTTAACCAATATCTCAA+GGG | - | chr3_1:42565721-42565740 | Msa0357960:CDS | 30.0% | |
| GTGTAGAAAGTAAAATCAAG+GGG | + | chr3_1:42565961-42565980 | None:intergenic | 30.0% | |
| GGTGTAGAAAGTAAAATCAA+GGG | + | chr3_1:42565962-42565981 | None:intergenic | 30.0% | |
| AGGTGTAGAAAGTAAAATCA+AGG | + | chr3_1:42565963-42565982 | None:intergenic | 30.0% | |
| !! | GTAATTGTATCGTTTTTCTC+TGG | + | chr3_1:42566021-42566040 | None:intergenic | 30.0% |
| ! | TTTATCTCTGTTACCTGTTT+TGG | - | chr3_1:42566462-42566481 | Msa0357960:intron | 30.0% |
| !!! | TCGTTTTGGTTCCAAAATAT+GGG | + | chr3_1:42566596-42566615 | None:intergenic | 30.0% |
| !!! | ATCGTTTTGGTTCCAAAATA+TGG | + | chr3_1:42566597-42566616 | None:intergenic | 30.0% |
| AAACACAGAATGCTCATATT+TGG | - | chr3_1:42566724-42566743 | Msa0357960:intron | 30.0% | |
| ! | TGAAGGATGAGTTTTTCTAA+AGG | + | chr3_1:42566919-42566938 | None:intergenic | 30.0% |
| ATCCTTCAAAAATTCGAAAC+AGG | - | chr3_1:42566931-42566950 | Msa0357960:CDS | 30.0% | |
| ! | TTTGAAACAGGAAAAGAGTA+AGG | - | chr3_1:42566980-42566999 | Msa0357960:intron | 30.0% |
| TTCGAAATGGGTGAAAATTA+AGG | - | chr3_1:42567017-42567036 | Msa0357960:intron | 30.0% | |
| ! | TTGAGTTTGAGATTCAACAA+AGG | - | chr3_1:42567093-42567112 | Msa0357960:CDS | 30.0% |
| AAAGGATTACTTAAAGAAGG+AGG | - | chr3_1:42567111-42567130 | Msa0357960:CDS | 30.0% | |
| ! | TTAAGTTTGAGATTCAACAC+AGG | - | chr3_1:42567135-42567154 | Msa0357960:CDS | 30.0% |
| ACATAAGAGGAAAAGATTGA+AGG | - | chr3_1:42567160-42567179 | Msa0357960:CDS | 30.0% | |
| ! | ATCAACTAAACCCAGATTTT+GGG | + | chr3_1:42567334-42567353 | None:intergenic | 30.0% |
| !! | GTTTAGTTGATGAATGATGA+AGG | - | chr3_1:42567343-42567362 | Msa0357960:intron | 30.0% |
| !! | GTTTAGTTGATGAATGATGA+AGG | - | chr3_1:42567343-42567362 | Msa0357960:intron | 30.0% |
| ! | TTTATCTCTGTTACCTGTTT+TGG | + | chr3_1:42566462-42566481 | None:intergenic | 30.0% |
| CTATTTATTTGGTATCGCTT+TGG | + | chr3_1:42567525-42567544 | None:intergenic | 30.0% | |
| TGGTCCCTTAACTATTTATT+TGG | + | chr3_1:42566390-42566409 | None:intergenic | 30.0% | |
| ACAGAGAGAGAAAACATAAA+AGG | + | chr3_1:42567889-42567908 | None:intergenic | 30.0% | |
| CAATGTGATTTAAGTCATGT+TGG | - | chr3_1:42568172-42568191 | Msa0357960:CDS | 30.0% | |
| ! | TGACCCCTTAATTTTATGTT+TGG | - | chr3_1:42568301-42568320 | Msa0357960:intron | 30.0% |
| ! | GACCCCTTAATTTTATGTTT+GGG | - | chr3_1:42568302-42568321 | Msa0357960:intron | 30.0% |
| ! | ACCCCTTAATTTTATGTTTG+GGG | - | chr3_1:42568303-42568322 | Msa0357960:intron | 30.0% |
| ACCCCAAACATAAAATTAAG+GGG | + | chr3_1:42568307-42568326 | None:intergenic | 30.0% | |
| GACCCCAAACATAAAATTAA+GGG | + | chr3_1:42568308-42568327 | None:intergenic | 30.0% | |
| !!! | AACTTATTTTTTGGGACTGA+CGG | - | chr3_1:42568337-42568356 | Msa0357960:intron | 30.0% |
| ACATAAGGTTTACTAGACAT+AGG | + | chr3_1:42568403-42568422 | None:intergenic | 30.0% | |
| GATTTAAGGAACATGACATA+AGG | + | chr3_1:42568418-42568437 | None:intergenic | 30.0% | |
| GAAACTCTCATTGGATAAAT+TGG | + | chr3_1:42568440-42568459 | None:intergenic | 30.0% | |
| GTGAAAAAAGAAACTCTCAT+TGG | + | chr3_1:42568449-42568468 | None:intergenic | 30.0% | |
| !! | ACAAAATATTTTGAAAGGGG+AGG | - | chr3_1:42568561-42568580 | Msa0357960:intron | 30.0% |
| !! | CAAAATATTTTGAAAGGGGA+GGG | - | chr3_1:42568562-42568581 | Msa0357960:intron | 30.0% |
| !! | TTGGAGGATTTTAGAAGATT+AGG | - | chr3_1:42568691-42568710 | Msa0357960:CDS | 30.0% |
| GGAGTTTCATTTACCTTTAT+TGG | + | chr3_1:42569094-42569113 | None:intergenic | 30.0% | |
| TTATAATCAACACACATGAG+AGG | + | chr3_1:42569167-42569186 | None:intergenic | 30.0% | |
| !! | TTTTGTATTTAGGATTGGAG+TGG | + | chr3_1:42569222-42569241 | None:intergenic | 30.0% |
| ! | TTCCCAGTCTTTTTGTATTT+AGG | + | chr3_1:42569232-42569251 | None:intergenic | 30.0% |
| TCAGTAGATATGACTTACAT+TGG | + | chr3_1:42569326-42569345 | None:intergenic | 30.0% | |
| ! | ATATACTAGTGCTATTAGAG+AGG | - | chr3_1:42569422-42569441 | Msa0357960:intron | 30.0% |
| ! | TATACTAGTGCTATTAGAGA+GGG | - | chr3_1:42569423-42569442 | Msa0357960:intron | 30.0% |
| ACGATTAAATGTCAATGTTC+CGG | + | chr3_1:42570050-42570069 | None:intergenic | 30.0% | |
| TTGCAACGTGTTATCATATT+CGG | - | chr3_1:42570451-42570470 | Msa0357960:intron | 30.0% | |
| !! | TTGAAGCTTGATTTGTACAA+TGG | - | chr3_1:42570575-42570594 | Msa0357960:intron | 30.0% |
| !! | TGAAGCTTGATTTGTACAAT+GGG | - | chr3_1:42570576-42570595 | Msa0357960:intron | 30.0% |
| GAATATGCTAATTATCAACC+TGG | - | chr3_1:42570653-42570672 | Msa0357960:intron | 30.0% | |
| ! | ATTGACATTGTTTTCCACAT+AGG | - | chr3_1:42570719-42570738 | Msa0357960:intron | 30.0% |
| ! | CAACTGAATTTTTCACTACT+TGG | - | chr3_1:42571128-42571147 | Msa0357960:intron | 30.0% |
| AGAAATAATTACGCAACCAT+TGG | + | chr3_1:42571179-42571198 | None:intergenic | 30.0% | |
| TTCATTGTTGGAACAAAGTA+TGG | - | chr3_1:42571204-42571223 | Msa0357960:intron | 30.0% | |
| AAGAGTTTGAGAATAATGAG+AGG | - | chr3_1:42571336-42571355 | Msa0357960:intron | 30.0% | |
| ATAGAAGCTATTTATAGGCA+TGG | - | chr3_1:42571402-42571421 | Msa0357960:intron | 30.0% | |
| GCTTGCAAATAAAACAGTTA+GGG | + | chr3_1:42571475-42571494 | None:intergenic | 30.0% | |
| AGCTTGCAAATAAAACAGTT+AGG | + | chr3_1:42571476-42571495 | None:intergenic | 30.0% | |
| CAAGTGAAAAATAAACTAGG+AGG | - | chr3_1:42571627-42571646 | Msa0357960:intron | 30.0% | |
| TAGATAGAAAACAACAACCA+TGG | - | chr3_1:42571804-42571823 | Msa0357960:intron | 30.0% | |
| GTAGTTATACCTGATAAATG+GGG | + | chr3_1:42571997-42572016 | None:intergenic | 30.0% | |
| GGATAATTAGAAATGGATGT+AGG | + | chr3_1:42572094-42572113 | None:intergenic | 30.0% | |
| ! | ATTTTCAGAGACAAAGACTA+TGG | - | chr3_1:42572254-42572273 | Msa0357960:intron | 30.0% |
| ! | ATGATTCTTTTACCATTTCC+AGG | - | chr3_1:42572351-42572370 | Msa0357960:intron | 30.0% |
| ! | TGATTCTTTTACCATTTCCA+GGG | - | chr3_1:42572352-42572371 | Msa0357960:intron | 30.0% |
| !! | CCCCGTTTTTCTCTATATAT+AGG | - | chr3_1:42565152-42565171 | Msa0357960:three_prime_UTR | 35.0% |
| TCTACTTAAAAGGCTCTTGA+TGG | + | chr3_1:42565186-42565205 | None:intergenic | 35.0% | |
| !! | ATCAAGAGCCTTTTAAGTAG+AGG | - | chr3_1:42565185-42565204 | Msa0357960:three_prime_UTR | 35.0% |
| !! | TCAAGAGCCTTTTAAGTAGA+GGG | - | chr3_1:42565186-42565205 | Msa0357960:three_prime_UTR | 35.0% |
| TACTTCACCCTCTACTTAAA+AGG | + | chr3_1:42565196-42565215 | None:intergenic | 35.0% | |
| ATCTGTTTGGGTGATATGAA+TGG | - | chr3_1:42565327-42565346 | Msa0357960:intron | 35.0% | |
| ! | TTGGGTGATATGAATGGATT+TGG | - | chr3_1:42565333-42565352 | Msa0357960:intron | 35.0% |
| ! | TGAATGGCAATCTTTGAAAG+TGG | + | chr3_1:42565366-42565385 | None:intergenic | 35.0% |
| AATGAATGCCCTTGAGATAT+TGG | + | chr3_1:42565732-42565751 | None:intergenic | 35.0% | |
| TTACTTTCTACACCTGTTTG+AGG | - | chr3_1:42565968-42565987 | Msa0357960:CDS | 35.0% | |
| ! | GAGTTAGTACCTGTTTGTTA+CGG | + | chr3_1:42566230-42566249 | None:intergenic | 35.0% |
| ! | TATAGGCTTAAATGCGCTTT+TGG | - | chr3_1:42566370-42566389 | Msa0357960:intron | 35.0% |
| TGATGAAGATCATGAAGAAC+AGG | + | chr3_1:42566558-42566577 | None:intergenic | 35.0% | |
| ! | TTTGGTTCCAAAATATGGGT+TGG | + | chr3_1:42566592-42566611 | None:intergenic | 35.0% |
| !! | AGGATGAGTTTTTCTAAAGG+AGG | + | chr3_1:42566916-42566935 | None:intergenic | 35.0% |
| ! | CTCCTGTTTCGAATTTTTGA+AGG | + | chr3_1:42566936-42566955 | None:intergenic | 35.0% |
| ! | CTGCAGAATGAATTTGAAAC+AGG | - | chr3_1:42566968-42566987 | Msa0357960:intron | 35.0% |
| TCTGCAGAATGAATTCGAAA+TGG | - | chr3_1:42567004-42567023 | Msa0357960:intron | 35.0% | |
| CTGCAGAATGAATTCGAAAT+GGG | - | chr3_1:42567005-42567024 | Msa0357960:intron | 35.0% | |
| AAGAGATTGAGGTTGTAAAC+AGG | - | chr3_1:42567063-42567082 | Msa0357960:intron | 35.0% | |
| ! | CATCAACTAAACCCAGATTT+TGG | + | chr3_1:42567335-42567354 | None:intergenic | 35.0% |
| TTGATGAATGATGAAGGTCT+GGG | - | chr3_1:42567349-42567368 | Msa0357960:intron | 35.0% | |
| !!! | GAATGATGAAGGTTTTGAGA+AGG | - | chr3_1:42567382-42567401 | Msa0357960:intron | 35.0% |
| ! | AATAGGCTTAAATGCGCTTT+TGG | + | chr3_1:42567556-42567575 | None:intergenic | 35.0% |
| AGTTGTACTCATACTATTGC+AGG | - | chr3_1:42567580-42567599 | Msa0357960:intron | 35.0% | |
| GTTGTACTCATACTATTGCA+GGG | - | chr3_1:42567581-42567600 | Msa0357960:intron | 35.0% | |
| ! | AGTCTTCATTAGTTGGTTCT+GGG | + | chr3_1:42567643-42567662 | None:intergenic | 35.0% |
| AGAACCAACTAATGAAGACT+GGG | - | chr3_1:42567643-42567662 | Msa0357960:intron | 35.0% | |
| ! | GTATGTTACTTGAAGTTTGC+AGG | + | chr3_1:42567683-42567702 | None:intergenic | 35.0% |
| CATGTGACTAAGTGTAGATA+AGG | + | chr3_1:42568048-42568067 | None:intergenic | 35.0% | |
| AACCAACGTGAGTTAACTTA+CGG | - | chr3_1:42568112-42568131 | Msa0357960:intron | 35.0% | |
| GAACGTTACTTAAGTTACGT+AGG | - | chr3_1:42568141-42568160 | Msa0357960:CDS | 35.0% | |
| GGACCCCAAACATAAAATTA+AGG | + | chr3_1:42568309-42568328 | None:intergenic | 35.0% | |
| ACTAGACATAGGTATGACAA+GGG | + | chr3_1:42568392-42568411 | None:intergenic | 35.0% | |
| TACTAGACATAGGTATGACA+AGG | + | chr3_1:42568393-42568412 | None:intergenic | 35.0% | |
| AACCGTTCGCATCTAAAAAA+GGG | - | chr3_1:42568485-42568504 | Msa0357960:intron | 35.0% | |
| !!! | ATCCCTTTTTTAGATGCGAA+CGG | + | chr3_1:42568490-42568509 | None:intergenic | 35.0% |
| TTCGCATCTAAAAAAGGGAT+GGG | - | chr3_1:42568490-42568509 | Msa0357960:intron | 35.0% | |
| ! | GTATTGAAGGATGATTTTGG+AGG | - | chr3_1:42568675-42568694 | Msa0357960:CDS | 35.0% |
| ! | TTCTCCTTTGCACTATTTTC+AGG | - | chr3_1:42569292-42569311 | Msa0357960:intron | 35.0% |
| ! | ATACTAGTGCTATTAGAGAG+GGG | - | chr3_1:42569424-42569443 | Msa0357960:intron | 35.0% |
| TGTACAATACACCAAATGGT+GGG | - | chr3_1:42569544-42569563 | Msa0357960:intron | 35.0% | |
| ! | TTTGAAACTGCAACAAGCTT+AGG | + | chr3_1:42569703-42569722 | None:intergenic | 35.0% |
| ! | AAGCTGTACCATTTGTTGAA+TGG | - | chr3_1:42569990-42570009 | Msa0357960:intron | 35.0% |
| ! | AGCTGTACCATTTGTTGAAT+GGG | - | chr3_1:42569991-42570010 | Msa0357960:intron | 35.0% |
| TTTAATCGTAACAGCATGTG+TGG | - | chr3_1:42570061-42570080 | Msa0357960:intron | 35.0% | |
| ! | GGGACATTTTGTTAATCTGT+AGG | - | chr3_1:42570158-42570177 | Msa0357960:intron | 35.0% |
| AAACCTGTGTGTATAAAACC+AGG | + | chr3_1:42570215-42570234 | None:intergenic | 35.0% | |
| TATTTGGCCAAAGTTCTTCA+AGG | + | chr3_1:42570238-42570257 | None:intergenic | 35.0% | |
| AAGAACTTTGGCCAAATATG+AGG | - | chr3_1:42570240-42570259 | Msa0357960:CDS | 35.0% | |
| TTTAGTGCACACCTCATATT+TGG | + | chr3_1:42570254-42570273 | None:intergenic | 35.0% | |
| !! | GAGTAAGAGGTATTCATTCA+AGG | - | chr3_1:42570402-42570421 | Msa0357960:intron | 35.0% |
| !! | AATGAGTTTTGTCCAGGATA+AGG | + | chr3_1:42570433-42570452 | None:intergenic | 35.0% |
| ! | TGTTATCATATTCGGTGACA+TGG | - | chr3_1:42570459-42570478 | Msa0357960:intron | 35.0% |
| ! | GTTATCATATTCGGTGACAT+GGG | - | chr3_1:42570460-42570479 | Msa0357960:intron | 35.0% |
| !! | GAAGCTTGATTTGTACAATG+GGG | - | chr3_1:42570577-42570596 | Msa0357960:intron | 35.0% |
| ! | AATGGGGAGAACACTTATTT+TGG | - | chr3_1:42570593-42570612 | Msa0357960:intron | 35.0% |
| !!! | TTTTGGTTCACATGTCCTTT+AGG | - | chr3_1:42570610-42570629 | Msa0357960:intron | 35.0% |
| GAGATGTATCCATTTGCATA+TGG | + | chr3_1:42570752-42570771 | None:intergenic | 35.0% | |
| AAATGGATACATCTCACAGT+GGG | - | chr3_1:42570757-42570776 | Msa0357960:intron | 35.0% | |
| CAGTTCCATATATGATAGCA+AGG | - | chr3_1:42570816-42570835 | Msa0357960:intron | 35.0% | |
| ! | GCAAACCTTGCTATCATATA+TGG | + | chr3_1:42570824-42570843 | None:intergenic | 35.0% |
| ! | TGCTTGCTTGCAATCATTTT+AGG | - | chr3_1:42570841-42570860 | Msa0357960:intron | 35.0% |
| CACATTTATTCATACTGCAG+TGG | - | chr3_1:42570915-42570934 | Msa0357960:intron | 35.0% | |
| TTTGCAGATATCATGAATGC+TGG | + | chr3_1:42571552-42571571 | None:intergenic | 35.0% | |
| CCATGATTCCATGAACTATA+AGG | + | chr3_1:42571589-42571608 | None:intergenic | 35.0% | |
| CCTTATAGTTCATGGAATCA+TGG | - | chr3_1:42571586-42571605 | Msa0357960:intron | 35.0% | |
| GACGAAAATTGGAAATATGC+AGG | - | chr3_1:42571675-42571694 | Msa0357960:intron | 35.0% | |
| ! | GTTTTCTATCTACTGTTGCA+AGG | + | chr3_1:42571796-42571815 | None:intergenic | 35.0% |
| GGTTCTGCATTATACACATT+TGG | + | chr3_1:42572115-42572134 | None:intergenic | 35.0% | |
| GGAACAATTCATGTTGTTGT+TGG | - | chr3_1:42572179-42572198 | Msa0357960:intron | 35.0% | |
| ! | ACAATTCATGTTGTTGTTGG+TGG | - | chr3_1:42572182-42572201 | Msa0357960:intron | 35.0% |
| ! | TCTCTGAAAATACTCCAAAC+AGG | + | chr3_1:42572245-42572264 | None:intergenic | 35.0% |
| ! | AGAGACAAAGACTATGGTTT+TGG | - | chr3_1:42572260-42572279 | Msa0357960:intron | 35.0% |
| GAGTACAAGAAAAGTAGTGA+TGG | - | chr3_1:42572320-42572339 | Msa0357960:intron | 35.0% | |
| ! | CAAGAAAAGTAGTGATGGAA+AGG | - | chr3_1:42572325-42572344 | Msa0357960:intron | 35.0% |
| CTTAAAAGGCTCTTGATGGA+GGG | + | chr3_1:42565182-42565201 | None:intergenic | 40.0% | |
| ACTTAAAAGGCTCTTGATGG+AGG | + | chr3_1:42565183-42565202 | None:intergenic | 40.0% | |
| ACCAACTTGAGGATCTGTTT+GGG | - | chr3_1:42565315-42565334 | Msa0357960:intron | 40.0% | |
| !!! | CGCAAGAATGGTTTTGTGAA+TGG | + | chr3_1:42565382-42565401 | None:intergenic | 40.0% |
| AGAATCATGGATCGCAAGAA+TGG | + | chr3_1:42565394-42565413 | None:intergenic | 40.0% | |
| ACCTTACTGCCAAGCAAAAA+GGG | + | chr3_1:42565435-42565454 | None:intergenic | 40.0% | |
| TACCTTACTGCCAAGCAAAA+AGG | + | chr3_1:42565436-42565455 | None:intergenic | 40.0% | |
| !! | TTGTATCGTTTTTCTCTGGC+TGG | + | chr3_1:42566017-42566036 | None:intergenic | 40.0% |
| TAATAGCCTGTTTGGTACAG+TGG | - | chr3_1:42566103-42566122 | Msa0357960:CDS | 40.0% | |
| AATCACGGTAGGTTAGCATT+GGG | + | chr3_1:42566149-42566168 | None:intergenic | 40.0% | |
| AAATCACGGTAGGTTAGCAT+TGG | + | chr3_1:42566150-42566169 | None:intergenic | 40.0% | |
| ! | GCTAACCTACCGTGATTTTT+AGG | - | chr3_1:42566152-42566171 | Msa0357960:CDS | 40.0% |
| AGCTTCCTAAAAATCACGGT+AGG | + | chr3_1:42566160-42566179 | None:intergenic | 40.0% | |
| ! | TTGTAGCTTTTGCCAAAACG+TGG | - | chr3_1:42566185-42566204 | Msa0357960:CDS | 40.0% |
| ! | TGTAGCTTTTGCCAAAACGT+GGG | - | chr3_1:42566186-42566205 | Msa0357960:CDS | 40.0% |
| !! | AAAAGCATGTACCCACGTTT+TGG | + | chr3_1:42566200-42566219 | None:intergenic | 40.0% |
| ! | TTAGTACCTGTTTGTTACGG+CGG | + | chr3_1:42566227-42566246 | None:intergenic | 40.0% |
| ATCATGAAGAACAGGATGGA+AGG | + | chr3_1:42566550-42566569 | None:intergenic | 40.0% | |
| GAAGATCATGAAGAACAGGA+TGG | + | chr3_1:42566554-42566573 | None:intergenic | 40.0% | |
| ! | CAACACACCAACCCATATTT+TGG | - | chr3_1:42566582-42566601 | Msa0357960:intron | 40.0% |
| TTCGAAACAGGAGAAGAGTA+AGG | - | chr3_1:42566943-42566962 | Msa0357960:CDS | 40.0% | |
| ! | AGTTTTGCGAGAAGAGATTG+AGG | - | chr3_1:42567052-42567071 | Msa0357960:intron | 40.0% |
| TTCAACACAGGACACATAAG+AGG | - | chr3_1:42567147-42567166 | Msa0357960:CDS | 40.0% | |
| !! | ATCGTTTTGGTCCCAAAATC+TGG | - | chr3_1:42567320-42567339 | Msa0357960:intron | 40.0% |
| !! | TCGTTTTGGTCCCAAAATCT+GGG | - | chr3_1:42567321-42567340 | Msa0357960:intron | 40.0% |
| ! | GTTGATGAATGATGAAGGTC+TGG | - | chr3_1:42567348-42567367 | Msa0357960:intron | 40.0% |
| TTAACGGAAAGGACCAAAAC+AGG | - | chr3_1:42567448-42567467 | Msa0357960:CDS | 40.0% | |
| AGAATGGGTGACAGTAAAAC+TGG | - | chr3_1:42567613-42567632 | Msa0357960:intron | 40.0% | |
| !! | GTCTTCATTAGTTGGTTCTG+GGG | + | chr3_1:42567642-42567661 | None:intergenic | 40.0% |
| ! | CAGTCTTCATTAGTTGGTTC+TGG | + | chr3_1:42567644-42567663 | None:intergenic | 40.0% |
| CAGAACCAACTAATGAAGAC+TGG | - | chr3_1:42567642-42567661 | Msa0357960:intron | 40.0% | |
| TTCAGCTCCATAACATTGCA+TGG | - | chr3_1:42567960-42567979 | Msa0357960:intron | 40.0% | |
| ATGGCTACCATGCAATGTTA+TGG | + | chr3_1:42567970-42567989 | None:intergenic | 40.0% | |
| CTTAGTCACATGAAACACCT+TGG | - | chr3_1:42568056-42568075 | Msa0357960:intron | 40.0% | |
| ! | CAGAATGTTGCTTACATCCA+AGG | + | chr3_1:42568076-42568095 | None:intergenic | 40.0% |
| GTGAGTTAACTTACGGTGTT+TGG | - | chr3_1:42568119-42568138 | Msa0357960:intron | 40.0% | |
| !!! | AGTCACGTGGAGAGTATTTT+AGG | - | chr3_1:42568216-42568235 | Msa0357960:intron | 40.0% |
| GAACCGTTCGCATCTAAAAA+AGG | - | chr3_1:42568484-42568503 | Msa0357960:intron | 40.0% | |
| GTTCGCATCTAAAAAAGGGA+TGG | - | chr3_1:42568489-42568508 | Msa0357960:intron | 40.0% | |
| CATCTAAAAAAGGGATGGGA+GGG | - | chr3_1:42568494-42568513 | Msa0357960:intron | 40.0% | |
| ATCTAAAAAAGGGATGGGAG+GGG | - | chr3_1:42568495-42568514 | Msa0357960:intron | 40.0% | |
| !! | ATTTTGAAAGGGGAGGGTTT+AGG | - | chr3_1:42568568-42568587 | Msa0357960:intron | 40.0% |
| AAAAAGGATGGGAGAACTTC+GGG | + | chr3_1:42568895-42568914 | None:intergenic | 40.0% | |
| GAAAAAGGATGGGAGAACTT+CGG | + | chr3_1:42568896-42568915 | None:intergenic | 40.0% | |
| GAGTTTGGAGGAAAAAGGAT+GGG | + | chr3_1:42568906-42568925 | None:intergenic | 40.0% | |
| AGAGTTTGGAGGAAAAAGGA+TGG | + | chr3_1:42568907-42568926 | None:intergenic | 40.0% | |
| TTGGAGAGTTTGGAGGAAAA+AGG | + | chr3_1:42568911-42568930 | None:intergenic | 40.0% | |
| GTTTATGGCCATGACTCTTT+AGG | + | chr3_1:42568939-42568958 | None:intergenic | 40.0% | |
| ATGGCTGAAAAACGAACTGA+AGG | - | chr3_1:42568979-42568998 | Msa0357960:intron | 40.0% | |
| ! | GTATTTAGGATTGGAGTGGT+TGG | + | chr3_1:42569218-42569237 | None:intergenic | 40.0% |
| ! | CTGCACGTTGATTGATCAAT+TGG | + | chr3_1:42569270-42569289 | None:intergenic | 40.0% |
| !! | TCCTTTGCACTATTTTCAGG+TGG | - | chr3_1:42569295-42569314 | Msa0357960:intron | 40.0% |
| TCCACCTGAAAATAGTGCAA+AGG | + | chr3_1:42569299-42569318 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr3_1:42569469-42569488 | Msa0357960:intron | 40.0% | |
| AACAGCCTCTTGTGTAAAAC+AGG | - | chr3_1:42569512-42569531 | Msa0357960:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAACA+GGG | - | chr3_1:42569513-42569532 | Msa0357960:intron | 40.0% | |
| ! | CTTACCCTGTTTTACACAAG+AGG | + | chr3_1:42569520-42569539 | None:intergenic | 40.0% |
| CTCTTGTGTAAAACAGGGTA+AGG | - | chr3_1:42569518-42569537 | Msa0357960:intron | 40.0% | |
| GCTGTGTACAATACACCAAA+TGG | - | chr3_1:42569540-42569559 | Msa0357960:intron | 40.0% | |
| GTGTACAATACACCAAATGG+TGG | - | chr3_1:42569543-42569562 | Msa0357960:intron | 40.0% | |
| TAGTATATAAAGGGGCAACC+CGG | + | chr3_1:42569610-42569629 | None:intergenic | 40.0% | |
| TATGACAGATGACAGTTACC+TGG | - | chr3_1:42569945-42569964 | Msa0357960:intron | 40.0% | |
| TATGTCATATCCACTTGTCC+AGG | + | chr3_1:42569966-42569985 | None:intergenic | 40.0% | |
| ! | GCTGTACCATTTGTTGAATG+GGG | - | chr3_1:42569992-42570011 | Msa0357960:intron | 40.0% |
| !!! | GATCCTGGTTTTATACACAC+AGG | - | chr3_1:42570209-42570228 | Msa0357960:intron | 40.0% |
| CAGGTTTCCTTGAAGAACTT+TGG | - | chr3_1:42570228-42570247 | Msa0357960:CDS | 40.0% | |
| CAATAAATGCCCCAACCTAT+AGG | + | chr3_1:42570362-42570381 | None:intergenic | 40.0% | |
| ! | TTGGGGCATTTATTGTCTGA+TGG | - | chr3_1:42570367-42570386 | Msa0357960:intron | 40.0% |
| TGTCTGATGGCTCTTATGTA+TGG | - | chr3_1:42570380-42570399 | Msa0357960:intron | 40.0% | |
| GCTCTTATGTATGGAGTAAG+AGG | - | chr3_1:42570389-42570408 | Msa0357960:intron | 40.0% | |
| TGTCTAAATCCTTGATGAGC+TGG | + | chr3_1:42570697-42570716 | None:intergenic | 40.0% | |
| CAAATGGATACATCTCACAG+TGG | - | chr3_1:42570756-42570775 | Msa0357960:intron | 40.0% | |
| TCATAGAAGGATCCTGAGTT+TGG | + | chr3_1:42570960-42570979 | None:intergenic | 40.0% | |
| ! | TGAATCTGGAGTGTCATAGA+AGG | + | chr3_1:42570973-42570992 | None:intergenic | 40.0% |
| TTCTATGACACTCCAGATTC+AGG | - | chr3_1:42570972-42570991 | Msa0357960:intron | 40.0% | |
| TAATAGTACATGGTTTCCGC+AGG | + | chr3_1:42571014-42571033 | None:intergenic | 40.0% | |
| !! | ATTTGGCTTTGTTCTCAGCA+GGG | + | chr3_1:42571037-42571056 | None:intergenic | 40.0% |
| !! | AATTTGGCTTTGTTCTCAGC+AGG | + | chr3_1:42571038-42571057 | None:intergenic | 40.0% |
| CTGAGAACAAAGCCAAATTC+TGG | - | chr3_1:42571039-42571058 | Msa0357960:intron | 40.0% | |
| CAGGATCATACGTACTATCT+TGG | + | chr3_1:42571155-42571174 | None:intergenic | 40.0% | |
| TAATTACGCAACCATTGGTC+AGG | + | chr3_1:42571174-42571193 | None:intergenic | 40.0% | |
| ACGAAACATGCCATAATCTG+TGG | + | chr3_1:42571705-42571724 | None:intergenic | 40.0% | |
| TGTGCTGCAAAGATTAACCA+TGG | + | chr3_1:42571824-42571843 | None:intergenic | 40.0% | |
| TCGGTTACTCCTCTAATGAT+TGG | - | chr3_1:42571852-42571871 | Msa0357960:intron | 40.0% | |
| CTTGGCATACCAATCATTAG+AGG | + | chr3_1:42571864-42571883 | None:intergenic | 40.0% | |
| CTCTAATGATTGGTATGCCA+AGG | - | chr3_1:42571862-42571881 | Msa0357960:intron | 40.0% | |
| TAATGATTGGTATGCCAAGG+AGG | - | chr3_1:42571865-42571884 | Msa0357960:intron | 40.0% | |
| AATGATTGGTATGCCAAGGA+GGG | - | chr3_1:42571866-42571885 | Msa0357960:intron | 40.0% | |
| GGCATACTCTTTCGTAGTTA+TGG | + | chr3_1:42571976-42571995 | None:intergenic | 40.0% | |
| ! | AAGAGTATGCCCCATTTATC+AGG | - | chr3_1:42571985-42572004 | Msa0357960:intron | 40.0% |
| TAGAAATGGATGTAGGCTGT+CGG | + | chr3_1:42572087-42572106 | None:intergenic | 40.0% | |
| CATTATTCTGGCACTGTGAA+TGG | - | chr3_1:42572158-42572177 | Msa0357960:intron | 40.0% | |
| ! | ATTCATGTTGTTGTTGGTGG+AGG | - | chr3_1:42572185-42572204 | Msa0357960:intron | 40.0% |
| ! | TTCATGTTGTTGTTGGTGGA+GGG | - | chr3_1:42572186-42572205 | Msa0357960:intron | 40.0% |
| CTGAAAATACTCCAAACAGG+AGG | + | chr3_1:42572242-42572261 | None:intergenic | 40.0% | |
| ATCTCTATAGTCCCTGGAAA+TGG | + | chr3_1:42572366-42572385 | None:intergenic | 40.0% | |
| ! | CTACATAATTCAGAGTGCCA+AGG | + | chr3_1:42572426-42572445 | None:intergenic | 40.0% |
| !! | TCCTCAAGTTGGTGATGAAG+AGG | + | chr3_1:42565308-42565327 | None:intergenic | 45.0% |
| CACCAACTTGAGGATCTGTT+TGG | - | chr3_1:42565314-42565333 | Msa0357960:intron | 45.0% | |
| ACCCAAACAGATCCTCAAGT+TGG | + | chr3_1:42565319-42565338 | None:intergenic | 45.0% | |
| ! | CAGTAATGGAGGCAGAATCA+TGG | + | chr3_1:42565407-42565426 | None:intergenic | 45.0% |
| CAAAAAGGGGGAAGCAGTAA+TGG | + | chr3_1:42565421-42565440 | None:intergenic | 45.0% | |
| CTTACTGCCAAGCAAAAAGG+GGG | + | chr3_1:42565433-42565452 | None:intergenic | 45.0% | |
| CCTTACTGCCAAGCAAAAAG+GGG | + | chr3_1:42565434-42565453 | None:intergenic | 45.0% | |
| AAGCTCAAATCGCCTCAAAC+AGG | + | chr3_1:42565983-42566002 | None:intergenic | 45.0% | |
| ! | TGTTTGAGGCGATTTGAGCT+TGG | - | chr3_1:42565982-42566001 | Msa0357960:CDS | 45.0% |
| TTAACGGAAGGGACCAAAAC+AGG | + | chr3_1:42566478-42566497 | None:intergenic | 45.0% | |
| AAGAACAGGATGGAAGGAGA+AGG | + | chr3_1:42566544-42566563 | None:intergenic | 45.0% | |
| CCAACCCAGTCTTCATTAGT+TGG | + | chr3_1:42567650-42567669 | None:intergenic | 45.0% | |
| CCAACTAATGAAGACTGGGT+TGG | - | chr3_1:42567647-42567666 | Msa0357960:intron | 45.0% | |
| AACATTGCATGGTAGCCATG+TGG | - | chr3_1:42567971-42567990 | Msa0357960:intron | 45.0% | |
| CCAAGGCATATCTTTCCACA+TGG | + | chr3_1:42567989-42568008 | None:intergenic | 45.0% | |
| CCATGTGGAAAGATATGCCT+TGG | - | chr3_1:42567986-42568005 | Msa0357960:intron | 45.0% | |
| ATGCCTTGGACTAACACAGA+AGG | - | chr3_1:42568000-42568019 | Msa0357960:intron | 45.0% | |
| ACTCCTTCTGTGTTAGTCCA+AGG | + | chr3_1:42568006-42568025 | None:intergenic | 45.0% | |
| CACCGTAAGTTAACTCACGT+TGG | + | chr3_1:42568117-42568136 | None:intergenic | 45.0% | |
| TGGGAGCAAGCAAATCTTGA+TGG | - | chr3_1:42568248-42568267 | Msa0357960:intron | 45.0% | |
| GGGAGCAAGCAAATCTTGAT+GGG | - | chr3_1:42568249-42568268 | Msa0357960:intron | 45.0% | |
| GCATCTAAAAAAGGGATGGG+AGG | - | chr3_1:42568493-42568512 | Msa0357960:intron | 45.0% | |
| TTAGGCGATGTTGGAGAGTT+TGG | + | chr3_1:42568921-42568940 | None:intergenic | 45.0% | |
| CATGACTCTTTAGGCGATGT+TGG | + | chr3_1:42568930-42568949 | None:intergenic | 45.0% | |
| CAACATCGCCTAAAGAGTCA+TGG | - | chr3_1:42568928-42568947 | Msa0357960:intron | 45.0% | |
| ATTGGGGCTGAGCATATGAA+TGG | + | chr3_1:42569076-42569095 | None:intergenic | 45.0% | |
| CATATGCTCAGCCCCAATAA+AGG | - | chr3_1:42569078-42569097 | Msa0357960:intron | 45.0% | |
| CTATTAGAGAGGGGTAACCT+TGG | - | chr3_1:42569433-42569452 | Msa0357960:intron | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | chr3_1:42569475-42569494 | Msa0357960:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | chr3_1:42569476-42569495 | Msa0357960:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3_1:42569509-42569528 | None:intergenic | 45.0% |
| TCCAAGACTTTCCATGAGCA+AGG | + | chr3_1:42569768-42569787 | None:intergenic | 45.0% | |
| ATGACAGTTACCTGGACAAG+TGG | - | chr3_1:42569953-42569972 | Msa0357960:intron | 45.0% | |
| TTTGGGCCCCATTCAACAAA+TGG | + | chr3_1:42570001-42570020 | None:intergenic | 45.0% | |
| ! | ATTTGTTGAATGGGGCCCAA+AGG | - | chr3_1:42570000-42570019 | Msa0357960:intron | 45.0% |
| TTTGTTGAATGGGGCCCAAA+GGG | - | chr3_1:42570001-42570020 | Msa0357960:intron | 45.0% | |
| GAATCTGCTTTCCACCCTTT+GGG | + | chr3_1:42570018-42570037 | None:intergenic | 45.0% | |
| TGAATCTGCTTTCCACCCTT+TGG | + | chr3_1:42570019-42570038 | None:intergenic | 45.0% | |
| AAGCAGATTCAATCTGCTGC+CGG | - | chr3_1:42570028-42570047 | Msa0357960:intron | 45.0% | |
| TCGTAACAGCATGTGTGGTA+TGG | - | chr3_1:42570066-42570085 | Msa0357960:intron | 45.0% | |
| ! | TTCAAGGCATCTCCTTATCC+TGG | - | chr3_1:42570418-42570437 | Msa0357960:intron | 45.0% |
| !! | CGTTGCAATGAGTTTTGTCC+AGG | + | chr3_1:42570439-42570458 | None:intergenic | 45.0% |
| ! | CATATTCGGTGACATGGGAA+AGG | - | chr3_1:42570465-42570484 | Msa0357960:intron | 45.0% |
| ! | TCAGTGGTGTTAAGTGAACC+AGG | + | chr3_1:42570674-42570693 | None:intergenic | 45.0% |
| CATATGGCAGATCTCCTATG+TGG | + | chr3_1:42570736-42570755 | None:intergenic | 45.0% | |
| GGAGATCTGCCATATGCAAA+TGG | - | chr3_1:42570740-42570759 | Msa0357960:intron | 45.0% | |
| TATGACACTCCAGATTCAGG+TGG | - | chr3_1:42570975-42570994 | Msa0357960:intron | 45.0% | |
| CTCAGCAGGGTAATAGTACA+TGG | + | chr3_1:42571024-42571043 | None:intergenic | 45.0% | |
| GTACGTATGATCCTGACCAA+TGG | - | chr3_1:42571160-42571179 | Msa0357960:intron | 45.0% | |
| TGCAGGTATGCCACAGATTA+TGG | - | chr3_1:42571692-42571711 | Msa0357960:intron | 45.0% | |
| TAGCAGACACTGAACATGAC+TGG | - | chr3_1:42571732-42571751 | Msa0357960:intron | 45.0% | |
| ACTGAACATGACTGGAGAGA+AGG | - | chr3_1:42571740-42571759 | Msa0357960:intron | 45.0% | |
| ACATGACTGGAGAGAAGGAT+CGG | - | chr3_1:42571745-42571764 | Msa0357960:intron | 45.0% | |
| CATTAGAGGAGTAACCGAGT+GGG | + | chr3_1:42571850-42571869 | None:intergenic | 45.0% | |
| TCATTAGAGGAGTAACCGAG+TGG | + | chr3_1:42571851-42571870 | None:intergenic | 45.0% | |
| CTCTTCAAATGAACCCTCCT+TGG | + | chr3_1:42571882-42571901 | None:intergenic | 45.0% | |
| GGTTCATTTGAAGAGCCCAT+GGG | - | chr3_1:42571887-42571906 | Msa0357960:intron | 45.0% | |
| ATTTGAAGAGCCCATGGGAA+GGG | - | chr3_1:42571892-42571911 | Msa0357960:intron | 45.0% | |
| TGCAAACTTTCCCTTCCCAT+GGG | + | chr3_1:42571905-42571924 | None:intergenic | 45.0% | |
| ATGGGAAGGGAAAGTTTGCA+GGG | - | chr3_1:42571905-42571924 | Msa0357960:intron | 45.0% | |
| ! | TCATGTTGTTGTTGGTGGAG+GGG | - | chr3_1:42572187-42572206 | Msa0357960:intron | 45.0% |
| CAAGACATCTCTATAGTCCC+TGG | + | chr3_1:42572372-42572391 | None:intergenic | 45.0% | |
| CAGGGACTATAGAGATGTCT+TGG | - | chr3_1:42572370-42572389 | Msa0357960:intron | 45.0% | |
| TGGTTGTGAGAAAACCACCT+TGG | - | chr3_1:42572406-42572425 | Msa0357960:intron | 45.0% | |
| ! | CATAATTCAGAGTGCCAAGG+TGG | + | chr3_1:42572423-42572442 | None:intergenic | 45.0% |
| !! | CTTAAAAAAAAAATTAAATT+TGG | + | chr3_1:42568726-42568745 | None:intergenic | 5.0% |
| !!! | CAAATTTAATTTTTTTTTTA+AGG | - | chr3_1:42568724-42568743 | Msa0357960:intron | 5.0% |
| !! | ATAACAATATATATTAAATT+TGG | + | chr3_1:42568763-42568782 | None:intergenic | 5.0% |
| GCCTCTTCATCACCAACTTG+AGG | - | chr3_1:42565304-42565323 | Msa0357960:intron | 50.0% | |
| AAAGGGGGAAGCAGTAATGG+AGG | + | chr3_1:42565418-42565437 | None:intergenic | 50.0% | |
| ! | ACTGCTTCCCCCTTTTTGCT+TGG | - | chr3_1:42565423-42565442 | Msa0357960:three_prime_UTR | 50.0% |
| ! | CCCCTTTTTGCTTGGCAGTA+AGG | - | chr3_1:42565431-42565450 | Msa0357960:three_prime_UTR | 50.0% |
| TAGCCTGTTTGGTACAGTGG+TGG | - | chr3_1:42566106-42566125 | Msa0357960:CDS | 50.0% | |
| AGCCTGTTTGGTACAGTGGT+GGG | - | chr3_1:42566107-42566126 | Msa0357960:CDS | 50.0% | |
| ! | GGTAGGTTAGCATTGGGAAG+TGG | + | chr3_1:42566143-42566162 | None:intergenic | 50.0% |
| ACTCATACTATTGCAGGGCG+AGG | - | chr3_1:42567586-42567605 | Msa0357960:intron | 50.0% | |
| TCCTCATCCTGCCTCAGATA+CGG | - | chr3_1:42568366-42568385 | Msa0357960:intron | 50.0% | |
| TATGACAAGGGCCGTATCTG+AGG | + | chr3_1:42568380-42568399 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3_1:42569453-42569472 | None:intergenic | 50.0% | |
| GCCTTGCTCATGGAAAGTCT+TGG | - | chr3_1:42569764-42569783 | Msa0357960:intron | 50.0% | |
| TACCTGGGGAAGAATAGGGA+GGG | + | chr3_1:42570337-42570356 | None:intergenic | 50.0% | |
| ATACCTGGGGAAGAATAGGG+AGG | + | chr3_1:42570338-42570357 | None:intergenic | 50.0% | |
| GGCATACCTGGGGAAGAATA+GGG | + | chr3_1:42570341-42570360 | None:intergenic | 50.0% | |
| AGGCATACCTGGGGAAGAAT+AGG | + | chr3_1:42570342-42570361 | None:intergenic | 50.0% | |
| TCTTCCCCAGGTATGCCTAT+AGG | - | chr3_1:42570344-42570363 | Msa0357960:intron | 50.0% | |
| CCAACCTATAGGCATACCTG+GGG | + | chr3_1:42570351-42570370 | None:intergenic | 50.0% | |
| CCCAACCTATAGGCATACCT+GGG | + | chr3_1:42570352-42570371 | None:intergenic | 50.0% | |
| CCCAGGTATGCCTATAGGTT+GGG | - | chr3_1:42570349-42570368 | Msa0357960:intron | 50.0% | |
| CCAGGTATGCCTATAGGTTG+GGG | - | chr3_1:42570350-42570369 | Msa0357960:intron | 50.0% | |
| AACCATCACGCTCAGCCTAA+AGG | + | chr3_1:42570628-42570647 | None:intergenic | 50.0% | |
| ATCCTTGATGAGCTGGTCAG+TGG | + | chr3_1:42570690-42570709 | None:intergenic | 50.0% | |
| GTGGAAATCACGAACGCTCT+TGG | - | chr3_1:42570934-42570953 | Msa0357960:intron | 50.0% | |
| CCAGATTCAGGTGGAGAATG+CGG | - | chr3_1:42570984-42571003 | Msa0357960:intron | 50.0% | |
| GGGTTCATTTGAAGAGCCCA+TGG | - | chr3_1:42571886-42571905 | Msa0357960:intron | 50.0% | |
| CATTTGAAGAGCCCATGGGA+AGG | - | chr3_1:42571891-42571910 | Msa0357960:intron | 50.0% | |
| CTGCAAACTTTCCCTTCCCA+TGG | + | chr3_1:42571906-42571925 | None:intergenic | 50.0% | |
| CATGGGAAGGGAAAGTTTGC+AGG | - | chr3_1:42571904-42571923 | Msa0357960:intron | 50.0% | |
| TGGGAAGGGAAAGTTTGCAG+GGG | - | chr3_1:42571906-42571925 | Msa0357960:intron | 50.0% | |
| ! | CATGTTGTTGTTGGTGGAGG+GGG | - | chr3_1:42572188-42572207 | Msa0357960:intron | 50.0% |
| CTCCCACCACTGTACCAAAC+AGG | + | chr3_1:42566112-42566131 | None:intergenic | 55.0% | |
| TTGCCACCGCCGTAACAAAC+AGG | - | chr3_1:42566218-42566237 | Msa0357960:intron | 55.0% | |
| ! | GTACCTGTTTGTTACGGCGG+TGG | + | chr3_1:42566224-42566243 | None:intergenic | 55.0% |
| TGCAGGGCGAGGATACAGAA+TGG | - | chr3_1:42567597-42567616 | Msa0357960:intron | 55.0% | |
| GCAGGGCGAGGATACAGAAT+GGG | - | chr3_1:42567598-42567617 | Msa0357960:intron | 55.0% | |
| TCTGCGCGACTTAAGTCACG+TGG | - | chr3_1:42568203-42568222 | Msa0357960:intron | 55.0% | |
| ! | GTATCTGAGGCAGGATGAGG+AGG | + | chr3_1:42568367-42568386 | None:intergenic | 55.0% |
| ATGGGAGGGGAGAGTCTTGA+AGG | - | chr3_1:42568508-42568527 | Msa0357960:intron | 55.0% | |
| TGGGAGAACTTCGGGAAGGA+GGG | + | chr3_1:42568887-42568906 | None:intergenic | 55.0% | |
| ATGGGAGAACTTCGGGAAGG+AGG | + | chr3_1:42568888-42568907 | None:intergenic | 55.0% | |
| AGGATGGGAGAACTTCGGGA+AGG | + | chr3_1:42568891-42568910 | None:intergenic | 55.0% | |
| GGCGATGTTGGAGAGTTTGG+AGG | + | chr3_1:42568918-42568937 | None:intergenic | 55.0% | |
| TCAACATGTCCACCCAACCC+CGG | - | chr3_1:42569028-42569047 | Msa0357960:intron | 55.0% | |
| ATCTACCCGTCCAATGCCAC+CGG | + | chr3_1:42569050-42569069 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3_1:42569488-42569507 | Msa0357960:intron | 55.0% | |
| CATATGCAGGGTCTGGGAAG+GGG | + | chr3_1:42569571-42569590 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCTGGGAA+GGG | + | chr3_1:42569572-42569591 | None:intergenic | 55.0% | |
| CTTCCCAGACCCTGCATATG+CGG | - | chr3_1:42569571-42569590 | Msa0357960:intron | 55.0% | |
| TTCCCAGACCCTGCATATGC+GGG | - | chr3_1:42569572-42569591 | Msa0357960:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | + | chr3_1:42569583-42569602 | None:intergenic | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | + | chr3_1:42569584-42569603 | None:intergenic | 55.0% | |
| CGCGGATACACAGGTGCTTT+AGG | + | chr3_1:42569745-42569764 | None:intergenic | 55.0% | |
| GACTTTCCATGAGCAAGGCG+CGG | + | chr3_1:42569763-42569782 | None:intergenic | 55.0% | |
| TGGGGAAGAATAGGGAGGGA+AGG | + | chr3_1:42570333-42570352 | None:intergenic | 55.0% | |
| TTCCCTCCCTATTCTTCCCC+AGG | - | chr3_1:42570332-42570351 | Msa0357960:intron | 55.0% | |
| CCCCAGGTATGCCTATAGGT+TGG | - | chr3_1:42570348-42570367 | Msa0357960:intron | 55.0% | |
| CCCCAACCTATAGGCATACC+TGG | + | chr3_1:42570353-42570372 | None:intergenic | 55.0% | |
| GTCCTTTAGGCTGAGCGTGA+TGG | - | chr3_1:42570623-42570642 | Msa0357960:intron | 55.0% | |
| CACCACTGACCAGCTCATCA+AGG | - | chr3_1:42570685-42570704 | Msa0357960:intron | 55.0% | |
| GAACGCTCTTGGCCAAACTC+AGG | - | chr3_1:42570945-42570964 | Msa0357960:intron | 55.0% | |
| CCGCATTCTCCACCTGAATC+TGG | + | chr3_1:42570987-42571006 | None:intergenic | 55.0% | |
| TGGAGAATGCGGAGTTCCTG+CGG | - | chr3_1:42570995-42571014 | Msa0357960:intron | 55.0% | |
| TTTGCAGCACATCGCCCACT+CGG | - | chr3_1:42571833-42571852 | Msa0357960:intron | 55.0% | |
| GGGAAAGTTTGCAGGGGCTT+TGG | - | chr3_1:42571912-42571931 | Msa0357960:intron | 55.0% | |
| TCACCACAGCACCTCCTGTT+TGG | - | chr3_1:42572228-42572247 | Msa0357960:intron | 55.0% | |
| !! | ACTCCAAACAGGAGGTGCTG+TGG | + | chr3_1:42572234-42572253 | None:intergenic | 55.0% |
| CTCACAACCATCGTGCACAC+AGG | + | chr3_1:42572396-42572415 | None:intergenic | 55.0% | |
| ! | GCCGTATCTGAGGCAGGATG+AGG | + | chr3_1:42568370-42568389 | None:intergenic | 60.0% |
| ! | ACAAGGGCCGTATCTGAGGC+AGG | + | chr3_1:42568376-42568395 | None:intergenic | 60.0% |
| TCTACCCGTCCAATGCCACC+GGG | + | chr3_1:42569049-42569068 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3_1:42569442-42569461 | Msa0357960:intron | 60.0% | |
| TGGGAAGGGGTCCCACCATT+TGG | + | chr3_1:42569558-42569577 | None:intergenic | 60.0% | |
| CGCATATGCAGGGTCTGGGA+AGG | + | chr3_1:42569573-42569592 | None:intergenic | 60.0% | |
| CTCCCGCATATGCAGGGTCT+GGG | + | chr3_1:42569577-42569596 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | - | chr3_1:42569588-42569607 | Msa0357960:intron | 60.0% |
| TGAGCAAGGCGCGGATACAC+AGG | + | chr3_1:42569754-42569773 | None:intergenic | 60.0% | |
| GTGTATCCGCGCCTTGCTCA+TGG | - | chr3_1:42569754-42569773 | Msa0357960:intron | 60.0% | |
| GTTGAATGGGGCCCAAAGGG+TGG | - | chr3_1:42570004-42570023 | Msa0357960:intron | 60.0% | |
| GTCTTGGCCTGTGTGCACGA+TGG | - | chr3_1:42572386-42572405 | Msa0357960:intron | 60.0% | |
| ACATGTCCACCCAACCCCGG+TGG | - | chr3_1:42569031-42569050 | Msa0357960:intron | 65.0% | |
| CGTCCAATGCCACCGGGGTT+GGG | + | chr3_1:42569043-42569062 | None:intergenic | 65.0% | |
| ! | CCAACCCCGGTGGCATTGGA+CGG | - | chr3_1:42569041-42569060 | Msa0357960:intron | 65.0% |
| ! | CAACCCCGGTGGCATTGGAC+GGG | - | chr3_1:42569042-42569061 | Msa0357960:intron | 65.0% |
| CTACCCGTCCAATGCCACCG+GGG | + | chr3_1:42569048-42569067 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+TGG | + | chr3_1:42569578-42569597 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | - | chr3_1:42569589-42569608 | Msa0357960:intron | 65.0% |
| GGTCAACCTGCGCGAACCGT+TGG | - | chr3_1:42570179-42570198 | Msa0357960:intron | 65.0% | |
| AACCTGCGCGAACCGTTGGC+TGG | - | chr3_1:42570183-42570202 | Msa0357960:intron | 65.0% | |
| ACCAGGATCGCGCCAGCCAA+CGG | + | chr3_1:42570198-42570217 | None:intergenic | 65.0% | |
| CCAATGCCACCGGGGTTGGG+TGG | + | chr3_1:42569040-42569059 | None:intergenic | 70.0% | |
| CCACCCAACCCCGGTGGCAT+TGG | - | chr3_1:42569037-42569056 | Msa0357960:intron | 70.0% | |
| CCGTCCAATGCCACCGGGGT+TGG | + | chr3_1:42569044-42569063 | None:intergenic | 70.0% | |
| ! | ACCGTTGGCTGGCGCGATCC+TGG | - | chr3_1:42570194-42570213 | Msa0357960:intron | 70.0% |
| CGCCAGCCAACGGTTCGCGC+AGG | + | chr3_1:42570188-42570207 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 42565152 | 42572763 | 42565152 | ID=Msa0357960;Name=Msa0357960 |
| chr3_1 | mRNA | 42565152 | 42572763 | 42565152 | ID=Msa0357960-mRNA-1;Parent=Msa0357960;Name=Msa0357960-mRNA-1;_AED=0.12;_eAED=0.12;_QI=115|1|1|1|0.91|0.84|13|164|620 |
| chr3_1 | exon | 42565152 | 42565246 | 42565152 | ID=Msa0357960-mRNA-1:exon:7300;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42565410 | 42565784 | 42565410 | ID=Msa0357960-mRNA-1:exon:7299;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42565909 | 42566218 | 42565909 | ID=Msa0357960-mRNA-1:exon:7298;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42566855 | 42566980 | 42566855 | ID=Msa0357960-mRNA-1:exon:7297;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42567078 | 42567283 | 42567078 | ID=Msa0357960-mRNA-1:exon:7296;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42567429 | 42567561 | 42567429 | ID=Msa0357960-mRNA-1:exon:7295;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42567654 | 42567735 | 42567654 | ID=Msa0357960-mRNA-1:exon:7294;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42567833 | 42567962 | 42567833 | ID=Msa0357960-mRNA-1:exon:7293;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42568123 | 42568215 | 42568123 | ID=Msa0357960-mRNA-1:exon:7292;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42568588 | 42568710 | 42568588 | ID=Msa0357960-mRNA-1:exon:7291;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42568816 | 42568891 | 42568816 | ID=Msa0357960-mRNA-1:exon:7290;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42570222 | 42570313 | 42570222 | ID=Msa0357960-mRNA-1:exon:7289;Parent=Msa0357960-mRNA-1 |
| chr3_1 | exon | 42572463 | 42572763 | 42572463 | ID=Msa0357960-mRNA-1:exon:7288;Parent=Msa0357960-mRNA-1 |
| chr3_1 | five_prime_UTR | 42572649 | 42572763 | 42572649 | ID=Msa0357960-mRNA-1:five_prime_utr;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42572463 | 42572648 | 42572463 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42570222 | 42570313 | 42570222 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42568816 | 42568891 | 42568816 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42568588 | 42568710 | 42568588 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42568123 | 42568215 | 42568123 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42567833 | 42567962 | 42567833 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42567654 | 42567735 | 42567654 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42567429 | 42567561 | 42567429 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42567078 | 42567283 | 42567078 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42566855 | 42566980 | 42566855 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42565909 | 42566218 | 42565909 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | CDS | 42565479 | 42565784 | 42565479 | ID=Msa0357960-mRNA-1:cds;Parent=Msa0357960-mRNA-1 |
| chr3_1 | three_prime_UTR | 42565410 | 42565478 | 42565410 | ID=Msa0357960-mRNA-1:three_prime_utr;Parent=Msa0357960-mRNA-1 |
| chr3_1 | three_prime_UTR | 42565152 | 42565246 | 42565152 | ID=Msa0357960-mRNA-1:three_prime_utr;Parent=Msa0357960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
