AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1287100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1287100 MtrunA17_Chr8g0360741 75.000 336 12 4 6 278 58 384 1.40e-165 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1287100 AT5G54290.2 55.425 341 72 7 15 278 18 355 2.25e-100 298
Msa1287100 AT5G54290.1 54.839 341 73 6 15 278 18 354 1.65e-99 295

Find 82 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGTTTGGCTGTAATTTA+TGG 0.085552 8_3:-36838222 Msa1287100:intron
CTATGTTTCGTTGCTTAATT+TGG 0.149345 8_3:+36839278 None:intergenic
AAATTGGCGGCAACTGATTT+TGG 0.158615 8_3:+36836684 None:intergenic
TTCTGGTTTGGCTGTAATTA+TGG 0.159872 8_3:-36837181 Msa1287100:CDS
TATAATATGGCAGGGGCTTT+TGG 0.205217 8_3:-36838062 Msa1287100:intron
GGATTACCTGTGGCTGCTTC+TGG 0.231671 8_3:-36837198 Msa1287100:CDS
TGACTTACTTGATGGAAAAT+TGG 0.255517 8_3:+36836668 None:intergenic
ACCTGTTCTAGCCACCCTTT+TGG 0.292716 8_3:-36836508 Msa1287100:CDS
TCTGGTTTGGCTGTAATTAT+GGG 0.303888 8_3:-36837180 Msa1287100:CDS
ACCTGTGGCTGCTTCTGGTT+TGG 0.311226 8_3:-36837193 Msa1287100:CDS
ACATTCGTTGGTGGATTAAC+AGG 0.319365 8_3:-36838776 Msa1287100:intron
ACAGTTTGGCTGTAATTTAT+GGG 0.340507 8_3:-36838221 Msa1287100:intron
ACTCAACTTAACCCGATTCA+TGG 0.345101 8_3:-36839128 Msa1287100:intron
TACATTACCATTGTGGCAGC+TGG 0.360323 8_3:+36835203 None:intergenic
ACAGGCCAATGAAGCAGTTC+TGG 0.364928 8_3:-36838363 Msa1287100:CDS
CAGCATGGATCAATCCTATA+AGG 0.383503 8_3:-36835419 Msa1287100:intron
TTGGTCCAGAACTGCTTCAT+TGG 0.383991 8_3:+36838358 None:intergenic
GGTGTGCAAGCATACCTGGC+TGG 0.396078 8_3:-36836567 Msa1287100:CDS
CTTAGGTGTGCAAGCATACC+TGG 0.399751 8_3:-36836571 Msa1287100:intron
TTTGTATGGTTACCATGAAT+CGG 0.407681 8_3:+36839116 None:intergenic
CAGTGCACCTAGTAAAACTT+AGG 0.410809 8_3:+36838327 None:intergenic
GGAGGCATCGGTGACTGGTT+TGG 0.422411 8_3:-36838410 Msa1287100:CDS
CCCAAAAGGGTGGCTAGAAC+AGG 0.429955 8_3:+36836507 None:intergenic
TGCTTCATTGGCCTGTTGTC+CGG 0.430538 8_3:+36838370 None:intergenic
GTTTCGTTGCTTAATTTGGA+TGG 0.454949 8_3:+36839282 None:intergenic
TTGTATGGTTACCATGAATC+GGG 0.456072 8_3:+36839117 None:intergenic
GTGTATATACCTTCTTAGAT+AGG 0.464767 8_3:-36835232 Msa1287100:CDS
CTGATGGAGGCATCGGTGAC+TGG 0.471880 8_3:-36838415 Msa1287100:CDS
TTCTTACAGGCAGCAGCAGC+AGG 0.473989 8_3:-36838883 Msa1287100:intron
ATGCAGCGACATATCCCAAA+AGG 0.493924 8_3:+36836493 None:intergenic
CGGTAACACACTAAGCGTAC+AGG 0.494081 8_3:+36838173 None:intergenic
CACTAAGCGTACAGGGAGAA+AGG 0.494224 8_3:+36838181 None:intergenic
CTGAACATGAAAATTGTCTT+CGG 0.494974 8_3:-36838832 Msa1287100:CDS
TTGGCTGTAATTTATGGGGC+AGG 0.501817 8_3:-36838216 Msa1287100:CDS
CAACTCAACTCAACTCAAGT+TGG 0.502177 8_3:-36839245 Msa1287100:five_prime_UTR
GACAGCGGAGCAATGCTGTT+AGG 0.503054 8_3:-36835260 Msa1287100:intron
AATAGTATTATGACATTCGT+TGG 0.507744 8_3:-36838788 Msa1287100:CDS
CCGCTAACCCTCGGTTACAT+TGG 0.512502 8_3:-36838153 Msa1287100:intron
CCAATGTAACCGAGGGTTAG+CGG 0.518246 8_3:+36838153 None:intergenic
CTTACTTGATGGAAAATTGG+CGG 0.519821 8_3:+36836671 None:intergenic
GTGTCTGTGTAAACTGCATA+TGG 0.525982 8_3:+36834975 None:intergenic
ATCTCAATTCGAACACGGAA+CGG 0.529188 8_3:+36839197 None:intergenic
GTGTGCAAGCATACCTGGCT+GGG 0.532324 8_3:-36836566 Msa1287100:CDS
ATCAAAACTGTCGAAGAATG+AGG 0.532805 8_3:+36836707 None:intergenic
ACACGGAACGGAATAGAAGA+AGG 0.540464 8_3:+36839209 None:intergenic
ACTTTGGCTGATGGAGGCAT+CGG 0.545892 8_3:-36838422 Msa1287100:CDS
TTTGTTTCAGTACCTCAAGA+AGG 0.547535 8_3:+36837151 None:intergenic
GGCATCGGTGACTGGTTTGG+AGG 0.548333 8_3:-36838407 Msa1287100:CDS
AAGCGTACAGGGAGAAAGGC+TGG 0.557765 8_3:+36838185 None:intergenic
AGTATTATGACATTCGTTGG+TGG 0.558895 8_3:-36838785 Msa1287100:CDS
GGTAATGTAGAAAATGTTGT+TGG 0.560416 8_3:-36835189 Msa1287100:exon
ACATTACCATTGTGGCAGCT+GGG 0.561699 8_3:+36835204 None:intergenic
CGTTTCGCAAGTACTCAGCA+TGG 0.564228 8_3:-36835434 Msa1287100:CDS
TCAAAACTGTCGAAGAATGA+GGG 0.564734 8_3:+36836708 None:intergenic
ATGCAAATGTAAGCCCAGCC+AGG 0.569028 8_3:+36836553 None:intergenic
AGTGCACCTAGTAAAACTTA+GGG 0.569620 8_3:+36838328 None:intergenic
GCTTATGGACAGATTGGTCA+AGG 0.570804 8_3:-36837219 Msa1287100:intron
TGGGAACAGCCTATCTAAGA+AGG 0.570878 8_3:+36835223 None:intergenic
CAGTTTGGCTGTAATTTATG+GGG 0.573149 8_3:-36838220 Msa1287100:CDS
CGGTCGAAGTCGAAGATCGA+TGG 0.578637 8_3:-36838812 Msa1287100:CDS
TAAAACTTAGGGACGATAGT+TGG 0.583887 8_3:+36838339 None:intergenic
GGGATATGTCGCTGCATCCA+AGG 0.585622 8_3:-36836487 Msa1287100:intron
AGTGTGTTACCGCTAACCCT+CGG 0.587650 8_3:-36838162 Msa1287100:CDS
TGCAGCGACATATCCCAAAA+GGG 0.588774 8_3:+36836494 None:intergenic
GGTAACACACTAAGCGTACA+GGG 0.590535 8_3:+36838174 None:intergenic
GTGAGTAGTAATTGTAACAA+CGG 0.595135 8_3:+36835019 None:intergenic
TATGGGTCTGAACCTTCTTG+AGG 0.597434 8_3:-36837163 Msa1287100:intron
ACTTGAGTTGAGTTGAGTTG+TGG 0.599189 8_3:+36839248 None:intergenic
GGAGCAATGCTGTTAGGAGG+TGG 0.599846 8_3:-36835254 Msa1287100:CDS
GCCAAACCAGAAGCAGCCAC+AGG 0.604082 8_3:+36837192 None:intergenic
AACTCATCTCAATTCGAACA+CGG 0.617015 8_3:+36839192 None:intergenic
AGCGGAGCAATGCTGTTAGG+AGG 0.617303 8_3:-36835257 Msa1287100:CDS
CACGGAACGGAATAGAAGAA+GGG 0.618082 8_3:+36839210 None:intergenic
GCTGTTCCCAGCTGCCACAA+TGG 0.640005 8_3:-36835210 Msa1287100:CDS
AACAGGTGTACTGCATGGTG+AGG 0.645829 8_3:+36836524 None:intergenic
CAAGCTTACCAATGTAACCG+AGG 0.655920 8_3:+36838145 None:intergenic
CAAAACTGTCGAAGAATGAG+GGG 0.666686 8_3:+36836709 None:intergenic
AAGCTTACCAATGTAACCGA+GGG 0.679976 8_3:+36838146 None:intergenic
TGAGTTGAGTTGAGTTGTGG+CGG 0.682508 8_3:+36839251 None:intergenic
AGCGACATATCCCAAAAGGG+TGG 0.693602 8_3:+36836497 None:intergenic
GATTGGTCAAGGATTACCTG+TGG 0.709712 8_3:-36837208 Msa1287100:CDS
GCTAGAACAGGTGTACTGCA+TGG 0.719252 8_3:+36836519 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCCTCAAAAAAAAAAAAAAA+AGG - chr8_3:36834994-36835013 Msa1287100:three_prime_UTR 15.0%
!!! TCCTTTTTTTTTTTTTTTTG+AGG + chr8_3:36834998-36835017 None:intergenic 15.0%
!! AATCTAAATCTGTTATAATA+TGG - chr8_3:36836248-36836267 Msa1287100:intron 15.0%
!! ATTCATATATGAAATGTTAT+GGG + chr8_3:36836678-36836697 None:intergenic 15.0%
!! AATTCATATATGAAATGTTA+TGG + chr8_3:36836679-36836698 None:intergenic 15.0%
!!! AAAAGTCATTTTTAATACAT+AGG + chr8_3:36836927-36836946 None:intergenic 15.0%
!!! TTAAATATCTTATTTACATG+AGG + chr8_3:36837323-36837342 None:intergenic 15.0%
!! TCTTGATGTAAAAATTTATA+TGG - chr8_3:36837885-36837904 Msa1287100:intron 15.0%
!! TAAAAAACAAATTACCTTAT+AGG + chr8_3:36838921-36838940 None:intergenic 15.0%
!!! TTTTTTTTTCTGTTACTGAT+TGG - chr8_3:36835633-36835652 Msa1287100:intron 20.0%
!! AAACAAATCAAAAGAAACAT+TGG + chr8_3:36835809-36835828 None:intergenic 20.0%
!!! AAGAATTGTGTTTTTTAATC+AGG - chr8_3:36835858-36835877 Msa1287100:intron 20.0%
!! AACCAAAGTTTCAATTATTA+GGG + chr8_3:36836057-36836076 None:intergenic 20.0%
!! AAACCAAAGTTTCAATTATT+AGG + chr8_3:36836058-36836077 None:intergenic 20.0%
!!! TAGTCATTTTAAAACGTTTT+TGG + chr8_3:36836227-36836246 None:intergenic 20.0%
!! ATTAGAAGAATAATATCATC+TGG + chr8_3:36836334-36836353 None:intergenic 20.0%
!! TGTTTATTACTAATGTAGTA+AGG - chr8_3:36836403-36836422 Msa1287100:intron 20.0%
!! GTTTATTACTAATGTAGTAA+GGG - chr8_3:36836404-36836423 Msa1287100:intron 20.0%
!!! GATATTTGTATTTGTTGTAT+AGG - chr8_3:36836831-36836850 Msa1287100:intron 20.0%
!!! GTAAGAAATTACAGTATTTT+AGG - chr8_3:36837347-36837366 Msa1287100:intron 20.0%
!!! ACAGTATTTTAGGTATATAA+AGG - chr8_3:36837357-36837376 Msa1287100:intron 20.0%
!! GTAAAAATTTATATGGTGAT+TGG - chr8_3:36837892-36837911 Msa1287100:intron 20.0%
!! AACTAATAAGCAAATAAAAC+TGG + chr8_3:36837939-36837958 None:intergenic 20.0%
!! GATTTATCTCATAAATCTAA+TGG + chr8_3:36838466-36838485 None:intergenic 20.0%
!! TGTTTATTGTTTCTTCTTAC+AGG - chr8_3:36835427-36835446 Msa1287100:CDS 25.0%
!!! ATGTTCAGTAGTAACTTTTT+TGG + chr8_3:36835479-36835498 None:intergenic 25.0%
! AATAGTATTATGACATTCGT+TGG - chr8_3:36835535-36835554 Msa1287100:intron 25.0%
! TTTCATTCAAATTAACCACT+AGG + chr8_3:36835594-36835613 None:intergenic 25.0%
! GTAAGTTTAAATATCTCTGT+TGG - chr8_3:36835720-36835739 Msa1287100:intron 25.0%
!!! TTTGATTTGTTTATTTTCCG+TGG - chr8_3:36835817-36835836 Msa1287100:intron 25.0%
!!! TGTGTTTTTTAATCAGGAAA+TGG - chr8_3:36835864-36835883 Msa1287100:intron 25.0%
! ACCAAAGTTTCAATTATTAG+GGG + chr8_3:36836056-36836075 None:intergenic 25.0%
! TCTTATTCAACTTTACAGTT+TGG - chr8_3:36836088-36836107 Msa1287100:intron 25.0%
! TAAATCTGTTATAATATGGC+AGG - chr8_3:36836252-36836271 Msa1287100:intron 25.0%
! AAATCTGTTATAATATGGCA+GGG - chr8_3:36836253-36836272 Msa1287100:intron 25.0%
! TAATATCATCTGGATTAACT+CGG + chr8_3:36836324-36836343 None:intergenic 25.0%
!!! CTTCTAATTGTCCATTTTTA+TGG - chr8_3:36836346-36836365 Msa1287100:intron 25.0%
! AGAAAATCGATCTTCAAATA+GGG + chr8_3:36836372-36836391 None:intergenic 25.0%
! AATTTATATTCCGTGAAGAT+AGG + chr8_3:36836622-36836641 None:intergenic 25.0%
! TGAATGAGAATAAAAGAGAA+AGG + chr8_3:36836979-36836998 None:intergenic 25.0%
! TGAATATTGTTGTAAACACA+AGG + chr8_3:36837241-36837260 None:intergenic 25.0%
!!! GTGTTACTCATTGAATTTTT+TGG - chr8_3:36837282-36837301 Msa1287100:intron 25.0%
! ACGATAAAAAATTCTTCGAA+TGG - chr8_3:36837525-36837544 Msa1287100:intron 25.0%
!!! CACATTTAGTTCTTTCAATA+TGG - chr8_3:36837691-36837710 Msa1287100:intron 25.0%
! TTTACATCAAGAAGAAACAT+TGG + chr8_3:36837877-36837896 None:intergenic 25.0%
! ATAGGTTCTATAATTTGGAT+AGG - chr8_3:36838224-36838243 Msa1287100:intron 25.0%
! ATTGAAGTGTGAGAAAAAAT+CGG + chr8_3:36838345-36838364 None:intergenic 25.0%
! ATACAAAGTTGACAAAAAAG+TGG + chr8_3:36838424-36838443 None:intergenic 25.0%
! TAATGGAAAAGAAAAATGTC+CGG + chr8_3:36838449-36838468 None:intergenic 25.0%
! AAAAGATTAAATTCACGATC+CGG - chr8_3:36838554-36838573 Msa1287100:intron 25.0%
! TCGATATTCAAATCATGAAT+CGG + chr8_3:36838591-36838610 None:intergenic 25.0%
! TATCTTAAAGAAACGCTTTA+AGG + chr8_3:36838810-36838829 None:intergenic 25.0%
! TACAAGCTATCCAATTAATT+AGG + chr8_3:36839004-36839023 None:intergenic 25.0%
!! TAACAACGGTTAATTTTAGA+GGG + chr8_3:36839293-36839312 None:intergenic 25.0%
CTATGTTTCGTTGCTTAATT+TGG + chr8_3:36835048-36835067 None:intergenic 30.0%
TTTGTATGGTTACCATGAAT+CGG + chr8_3:36835210-36835229 None:intergenic 30.0%
GAGTAAATTCAGCAATTGTT+AGG + chr8_3:36835248-36835267 None:intergenic 30.0%
!!! TCAGTAGTAACTTTTTTGGT+GGG + chr8_3:36835475-36835494 None:intergenic 30.0%
!!! TTCAGTAGTAACTTTTTTGG+TGG + chr8_3:36835476-36835495 None:intergenic 30.0%
CTGAACATGAAAATTGTCTT+CGG - chr8_3:36835491-36835510 Msa1287100:intron 30.0%
! TCAATGTTTTCTTAACCTAG+TGG - chr8_3:36835576-36835595 Msa1287100:intron 30.0%
! AATATTTTCAGCTGCACAAT+TGG - chr8_3:36835674-36835693 Msa1287100:intron 30.0%
ATAGACATAAAATCGTTGAG+CGG + chr8_3:36836028-36836047 None:intergenic 30.0%
TCCCCTAATAATTGAAACTT+TGG - chr8_3:36836052-36836071 Msa1287100:intron 30.0%
TACAGTTTGGCTGTAATTTA+TGG - chr8_3:36836101-36836120 Msa1287100:intron 30.0%
ACAGTTTGGCTGTAATTTAT+GGG - chr8_3:36836102-36836121 Msa1287100:intron 30.0%
!!! TGTTGTCGTTTTACGTTTTT+CGG - chr8_3:36836199-36836218 Msa1287100:intron 30.0%
AATCTGTTATAATATGGCAG+GGG - chr8_3:36836254-36836273 Msa1287100:intron 30.0%
AATATCATCTGGATTAACTC+GGG + chr8_3:36836323-36836342 None:intergenic 30.0%
TTCAAATAGGGCCATAAAAA+TGG + chr8_3:36836360-36836379 None:intergenic 30.0%
GAGAAAATCGATCTTCAAAT+AGG + chr8_3:36836373-36836392 None:intergenic 30.0%
ATGTCAAATGCTTAGATGTT+TGG - chr8_3:36836577-36836596 Msa1287100:intron 30.0%
ATATGAAATGTTATGGGTCT+TGG + chr8_3:36836672-36836691 None:intergenic 30.0%
GAATAAAAGAGAAAGGTGAA+TGG + chr8_3:36836972-36836991 None:intergenic 30.0%
GAAAAGTGATATCACAGATT+CGG + chr8_3:36837199-36837218 None:intergenic 30.0%
GAGTAAAAGAAACTACATCT+TGG + chr8_3:36837398-36837417 None:intergenic 30.0%
TGATCTGCGAAAAAAATTCA+AGG + chr8_3:36837581-36837600 None:intergenic 30.0%
TGACTTACTTGATGGAAAAT+TGG + chr8_3:36837658-36837677 None:intergenic 30.0%
CATGAACAAATTCTACTCTT+AGG - chr8_3:36837735-36837754 Msa1287100:intron 30.0%
! AAGAAACATTGGTTACTAAC+AGG + chr8_3:36837866-36837885 None:intergenic 30.0%
!! ATAAAACTGGTTTACCCTTT+TGG + chr8_3:36837926-36837945 None:intergenic 30.0%
!! ATCGGTCAAATCGATTTTAT+TGG - chr8_3:36837993-36838012 Msa1287100:intron 30.0%
! GTAAAGACTAAACAGAGTTT+TGG + chr8_3:36838192-36838211 None:intergenic 30.0%
! TTTGGAGTTTCTAAGTATGA+AGG - chr8_3:36838285-36838304 Msa1287100:intron 30.0%
AGAAAAAATCGGTCTATTTC+CGG + chr8_3:36838334-36838353 None:intergenic 30.0%
! TTTTGTCAACTTTGTATAGC+CGG - chr8_3:36838427-36838446 Msa1287100:CDS 30.0%
! TGAATCGGAAGAAAATTTTC+CGG + chr8_3:36838576-36838595 None:intergenic 30.0%
GTGACTAAATATGCAAATCA+TGG + chr8_3:36838622-36838641 None:intergenic 30.0%
GTATCCACTTCCTAATTAAT+TGG - chr8_3:36838991-36839010 Msa1287100:intron 30.0%
CTATCCAATTAATTAGGAAG+TGG + chr8_3:36838998-36839017 None:intergenic 30.0%
GTGTATATACCTTCTTAGAT+AGG - chr8_3:36839091-36839110 Msa1287100:intron 30.0%
! CATTTTCTACATTACCATTG+TGG + chr8_3:36839130-36839149 None:intergenic 30.0%
GGTAATGTAGAAAATGTTGT+TGG - chr8_3:36839134-36839153 Msa1287100:CDS 30.0%
! GTAACAACGGTTAATTTTAG+AGG + chr8_3:36839294-36839313 None:intergenic 30.0%
GTGAGTAGTAATTGTAACAA+CGG + chr8_3:36839307-36839326 None:intergenic 30.0%
! GTTTCGTTGCTTAATTTGGA+TGG + chr8_3:36835044-36835063 None:intergenic 35.0%
!!! CTCAACTCAAGTTGGATTTT+TGG - chr8_3:36835086-36835105 Msa1287100:three_prime_UTR 35.0%
AACTCATCTCAATTCGAACA+CGG + chr8_3:36835134-36835153 None:intergenic 35.0%
TTGTATGGTTACCATGAATC+GGG + chr8_3:36835209-36835228 None:intergenic 35.0%
AGATGAGATGTGAGTTTGTA+TGG + chr8_3:36835224-36835243 None:intergenic 35.0%
AGTATTATGACATTCGTTGG+TGG - chr8_3:36835538-36835557 Msa1287100:intron 35.0%
CCAGAAGACATTAATGCAAA+AGG + chr8_3:36835771-36835790 None:intergenic 35.0%
! CCTTTTGCATTAATGTCTTC+TGG - chr8_3:36835768-36835787 Msa1287100:intron 35.0%
!! GTTTATTTTCCGTGGTAGTT+TGG - chr8_3:36835825-36835844 Msa1287100:intron 35.0%
TAAAACTTAGGGACGATAGT+TGG + chr8_3:36835987-36836006 None:intergenic 35.0%
! TATCGTCCCTAAGTTTTACT+AGG - chr8_3:36835989-36836008 Msa1287100:intron 35.0%
AGTGCACCTAGTAAAACTTA+GGG + chr8_3:36835998-36836017 None:intergenic 35.0%
CAGTTTGGCTGTAATTTATG+GGG - chr8_3:36836103-36836122 Msa1287100:intron 35.0%
ATGTCATTACACCATTGCTT+AGG - chr8_3:36836429-36836448 Msa1287100:intron 35.0%
!! AGTGTTCTAGGTTTTCAGTA+AGG - chr8_3:36836467-36836486 Msa1287100:intron 35.0%
!!! CACTTGTTGTTCTGTTTTCT+TGG - chr8_3:36836715-36836734 Msa1287100:CDS 35.0%
AACAATGTCTTCTTCCTATC+AGG - chr8_3:36836998-36837017 Msa1287100:intron 35.0%
TCTTCTTCCTATCAGGTTAT+TGG - chr8_3:36837005-36837024 Msa1287100:intron 35.0%
AGAATCTCCAATAACCTGAT+AGG + chr8_3:36837015-36837034 None:intergenic 35.0%
! AGATTCTATAGCATTTTCCC+TGG - chr8_3:36837028-36837047 Msa1287100:intron 35.0%
! GATTCTATAGCATTTTCCCT+GGG - chr8_3:36837029-36837048 Msa1287100:intron 35.0%
!! TTCTGGTTTGGCTGTAATTA+TGG - chr8_3:36837142-36837161 Msa1287100:intron 35.0%
!! TCTGGTTTGGCTGTAATTAT+GGG - chr8_3:36837143-36837162 Msa1287100:intron 35.0%
TTTGTTTCAGTACCTCAAGA+AGG + chr8_3:36837175-36837194 None:intergenic 35.0%
TTCATAGTCTAACTCTCAGT+TGG - chr8_3:36837257-36837276 Msa1287100:intron 35.0%
TCAAAACTGTCGAAGAATGA+GGG + chr8_3:36837618-36837637 None:intergenic 35.0%
ATCAAAACTGTCGAAGAATG+AGG + chr8_3:36837619-36837638 None:intergenic 35.0%
CTTACTTGATGGAAAATTGG+CGG + chr8_3:36837655-36837674 None:intergenic 35.0%
TGATTGGAAAAAGAGCCAAA+AGG - chr8_3:36837908-36837927 Msa1287100:intron 35.0%
GATTGGAAAAAGAGCCAAAA+GGG - chr8_3:36837909-36837928 Msa1287100:intron 35.0%
TTACTTACGTTTGCATGTCA+AGG - chr8_3:36838043-36838062 Msa1287100:CDS 35.0%
ACCCAATCAATACAAATCTC+CGG - chr8_3:36838138-36838157 Msa1287100:intron 35.0%
!! ACCGGAGATTTGTATTGATT+GGG + chr8_3:36838142-36838161 None:intergenic 35.0%
! ACTCTGTTTAGTCTTTACCT+AGG - chr8_3:36838194-36838213 Msa1287100:CDS 35.0%
CGAGGATAGGTTCTATAATT+TGG - chr8_3:36838219-36838238 Msa1287100:CDS 35.0%
GTTTCTAAGTATGAAGGATC+CGG - chr8_3:36838291-36838310 Msa1287100:intron 35.0%
AAGCAATGTCTCGCATAATT+TGG - chr8_3:36838377-36838396 Msa1287100:CDS 35.0%
AGTCACTCTTATGCAAATGA+AGG - chr8_3:36838636-36838655 Msa1287100:CDS 35.0%
TTTGTACAGAATCCAGTGAT+TGG - chr8_3:36838670-36838689 Msa1287100:intron 35.0%
!! TTGCTTTTGACATACACAAC+AGG - chr8_3:36838700-36838719 Msa1287100:intron 35.0%
! ATACATCTCTCCCTTACTTT+TGG - chr8_3:36838723-36838742 Msa1287100:intron 35.0%
AAAGAAGCAGCCAAAAGTAA+GGG + chr8_3:36838736-36838755 None:intergenic 35.0%
AAAAGAAGCAGCCAAAAGTA+AGG + chr8_3:36838737-36838756 None:intergenic 35.0%
GAAAGCAAGCTCTGTAAATA+CGG + chr8_3:36838870-36838889 None:intergenic 35.0%
!! ATTTTAGAGGGTCAAGAAGA+AGG + chr8_3:36839281-36839300 None:intergenic 35.0%
!! ACTTGAGTTGAGTTGAGTTG+TGG + chr8_3:36835078-36835097 None:intergenic 40.0%
CAACTCAACTCAACTCAAGT+TGG - chr8_3:36835078-36835097 Msa1287100:three_prime_UTR 40.0%
ATCTCAATTCGAACACGGAA+CGG + chr8_3:36835129-36835148 None:intergenic 40.0%
ACTCAACTTAACCCGATTCA+TGG - chr8_3:36835195-36835214 Msa1287100:exon 40.0%
!! ACATTCGTTGGTGGATTAAC+AGG - chr8_3:36835547-36835566 Msa1287100:intron 40.0%
!!! GGTTGCTCCTGTTTTTACTT+TGG - chr8_3:36835885-36835904 Msa1287100:intron 40.0%
CCATCAGCCAAAGTAAAAAC+AGG + chr8_3:36835895-36835914 None:intergenic 40.0%
!!! CCTGTTTTTACTTTGGCTGA+TGG - chr8_3:36835892-36835911 Msa1287100:intron 40.0%
! GTTTTTACTTTGGCTGATGG+AGG - chr8_3:36835895-36835914 Msa1287100:intron 40.0%
CAGTGCACCTAGTAAAACTT+AGG + chr8_3:36835999-36836018 None:intergenic 40.0%
AAGCTTACCAATGTAACCGA+GGG + chr8_3:36836180-36836199 None:intergenic 40.0%
! TATAATATGGCAGGGGCTTT+TGG - chr8_3:36836261-36836280 Msa1287100:intron 40.0%
! ACCATTGCTTAGGAAAGTGT+AGG - chr8_3:36836439-36836458 Msa1287100:intron 40.0%
ACCTACACTTTCCTAAGCAA+TGG + chr8_3:36836443-36836462 None:intergenic 40.0%
!! GTGTAGGTTTCTAGTGTTCT+AGG - chr8_3:36836455-36836474 Msa1287100:intron 40.0%
! TAACCAGTGTGTTGCTCTTT+AGG - chr8_3:36836520-36836539 Msa1287100:CDS 40.0%
CCTTCTACTTCCTATCTTCA+CGG - chr8_3:36836609-36836628 Msa1287100:intron 40.0%
TGTCTCTGTTTGTGTTTGTG+GGG + chr8_3:36836772-36836791 None:intergenic 40.0%
CTGTCTCTGTTTGTGTTTGT+GGG + chr8_3:36836773-36836792 None:intergenic 40.0%
TCTGTCTCTGTTTGTGTTTG+TGG + chr8_3:36836774-36836793 None:intergenic 40.0%
TACATAGGCTCAACTTCTCA+AGG + chr8_3:36836912-36836931 None:intergenic 40.0%
! TCTTTTGCAGGAAAGGCTTA+TGG - chr8_3:36837089-36837108 Msa1287100:intron 40.0%
CAAAACTGTCGAAGAATGAG+GGG + chr8_3:36837617-36837636 None:intergenic 40.0%
!! AAATTGGCGGCAACTGATTT+TGG + chr8_3:36837642-36837661 None:intergenic 40.0%
!! GAGAGCATTGACTTACTTGA+TGG + chr8_3:36837666-36837685 None:intergenic 40.0%
GGTTACTAACAGGAATACCT+TGG + chr8_3:36837856-36837875 None:intergenic 40.0%
AAAACTCAGCAGTCTCACAT+CGG - chr8_3:36837975-36837994 Msa1287100:intron 40.0%
! CACCGGAGATTTGTATTGAT+TGG + chr8_3:36838143-36838162 None:intergenic 40.0%
AATAGAACACACACACACAC+CGG + chr8_3:36838160-36838179 None:intergenic 40.0%
! TTAGTCTTTACCTAGGAACG+AGG - chr8_3:36838201-36838220 Msa1287100:CDS 40.0%
CCAAATGCCTACCATAGTTA+CGG + chr8_3:36838270-36838289 None:intergenic 40.0%
AGTGGCAGATCATGAATGTT+CGG + chr8_3:36838406-36838425 None:intergenic 40.0%
!! TTTTGGCTGCTTCTTTTGCT+GGG - chr8_3:36838740-36838759 Msa1287100:intron 40.0%
CAGCATGGATCAATCCTATA+AGG - chr8_3:36838904-36838923 Msa1287100:intron 40.0%
CACGACAAGTATCAGAAACA+TGG + chr8_3:36839031-36839050 None:intergenic 40.0%
!! TGAGTTGAGTTGAGTTGTGG+CGG + chr8_3:36835075-36835094 None:intergenic 45.0%
CACGGAACGGAATAGAAGAA+GGG + chr8_3:36835116-36835135 None:intergenic 45.0%
ACACGGAACGGAATAGAAGA+AGG + chr8_3:36835117-36835136 None:intergenic 45.0%
! CTTACAGCTTTTGCAGTGAC+TGG + chr8_3:36835705-36835724 None:intergenic 45.0%
TTCCTGAGACCAAACTACCA+CGG + chr8_3:36835837-36835856 None:intergenic 45.0%
!!! GGAGGCATTCTATTTTCAGC+CGG - chr8_3:36835934-36835953 Msa1287100:intron 45.0%
! TCTATTTTCAGCCGGACAAC+AGG - chr8_3:36835942-36835961 Msa1287100:intron 45.0%
TTGGTCCAGAACTGCTTCAT+TGG + chr8_3:36835968-36835987 None:intergenic 45.0%
TTGGCTGTAATTTATGGGGC+AGG - chr8_3:36836107-36836126 Msa1287100:intron 45.0%
GGTAACACACTAAGCGTACA+GGG + chr8_3:36836152-36836171 None:intergenic 45.0%
CAAGCTTACCAATGTAACCG+AGG + chr8_3:36836181-36836200 None:intergenic 45.0%
ATCATCTGGATTAACTCGGG+CGG + chr8_3:36836320-36836339 None:intergenic 45.0%
TGTCCTAAAGAGCAACACAC+TGG + chr8_3:36836526-36836545 None:intergenic 45.0%
CCGTGAAGATAGGAAGTAGA+AGG + chr8_3:36836612-36836631 None:intergenic 45.0%
TAATGTGGTTGCAAGACCCA+GGG + chr8_3:36837048-36837067 None:intergenic 45.0%
GGAAAGGCTTATGGACAGAT+TGG - chr8_3:36837098-36837117 Msa1287100:intron 45.0%
! GCTTATGGACAGATTGGTCA+AGG - chr8_3:36837104-36837123 Msa1287100:intron 45.0%
! GATTGGTCAAGGATTACCTG+TGG - chr8_3:36837115-36837134 Msa1287100:intron 45.0%
TATGGGTCTGAACCTTCTTG+AGG - chr8_3:36837160-36837179 Msa1287100:intron 45.0%
TGCAGCGACATATCCCAAAA+GGG + chr8_3:36837832-36837851 None:intergenic 45.0%
ATGCAGCGACATATCCCAAA+AGG + chr8_3:36837833-36837852 None:intergenic 45.0%
CTTTACCTAGGAACGAGGAT+AGG - chr8_3:36838206-36838225 Msa1287100:CDS 45.0%
TAGAACCTATCCTCGTTCCT+AGG + chr8_3:36838214-36838233 None:intergenic 45.0%
GACTATCTCGACCGTAACTA+TGG - chr8_3:36838256-36838275 Msa1287100:intron 45.0%
ATCTCGACCGTAACTATGGT+AGG - chr8_3:36838260-36838279 Msa1287100:intron 45.0%
CCGTAACTATGGTAGGCATT+TGG - chr8_3:36838267-36838286 Msa1287100:intron 45.0%
TATGAAGGATCCGGTATCTG+AGG - chr8_3:36838300-36838319 Msa1287100:intron 45.0%
GGCATGATATCCTCAGATAC+CGG + chr8_3:36838313-36838332 None:intergenic 45.0%
GGTATCTGAGGATATCATGC+CGG - chr8_3:36838312-36838331 Msa1287100:intron 45.0%
GTACAGAATCCAGTGATTGG+AGG - chr8_3:36838673-36838692 Msa1287100:intron 45.0%
!! CTTTTGGCTGCTTCTTTTGC+TGG - chr8_3:36838739-36838758 Msa1287100:intron 45.0%
! TTTGGCTGCTTCTTTTGCTG+GGG - chr8_3:36838741-36838760 Msa1287100:intron 45.0%
!! GTGATTTGCTTGTTCGACAG+CGG - chr8_3:36839048-36839067 Msa1287100:intron 45.0%
TGGGAACAGCCTATCTAAGA+AGG + chr8_3:36839103-36839122 None:intergenic 45.0%
ACATTACCATTGTGGCAGCT+GGG + chr8_3:36839122-36839141 None:intergenic 45.0%
TACATTACCATTGTGGCAGC+TGG + chr8_3:36839123-36839142 None:intergenic 45.0%
TGGTCTGTAACATGTAGCGA+TGG - chr8_3:36839154-36839173 Msa1287100:CDS 45.0%
TTCCGTGGTAGTTTGGTCTC+AGG - chr8_3:36835832-36835851 Msa1287100:intron 50.0%
! ACTTTGGCTGATGGAGGCAT+CGG - chr8_3:36835901-36835920 Msa1287100:intron 50.0%
! TGCTTCATTGGCCTGTTGTC+CGG + chr8_3:36835956-36835975 None:intergenic 50.0%
ACAGGCCAATGAAGCAGTTC+TGG - chr8_3:36835960-36835979 Msa1287100:intron 50.0%
CACTAAGCGTACAGGGAGAA+AGG + chr8_3:36836145-36836164 None:intergenic 50.0%
CGGTAACACACTAAGCGTAC+AGG + chr8_3:36836153-36836172 None:intergenic 50.0%
AGTGTGTTACCGCTAACCCT+CGG - chr8_3:36836161-36836180 Msa1287100:intron 50.0%
CCAATGTAACCGAGGGTTAG+CGG + chr8_3:36836173-36836192 None:intergenic 50.0%
! CTCTGGAAAAAGCAGAGCAC+AGG - chr8_3:36836284-36836303 Msa1287100:intron 50.0%
CTAATGTGGTTGCAAGACCC+AGG + chr8_3:36837049-36837068 None:intergenic 50.0%
GCAACCACATTAGCACTGCT+CGG - chr8_3:36837056-36837075 Msa1287100:intron 50.0%
!!! AGGAGCGTCTTTTGCAGGAA+AGG - chr8_3:36837082-36837101 Msa1287100:intron 50.0%
CTTAGGTGTGCAAGCATACC+TGG - chr8_3:36837752-36837771 Msa1287100:intron 50.0%
ATGCAAATGTAAGCCCAGCC+AGG + chr8_3:36837773-36837792 None:intergenic 50.0%
AACAGGTGTACTGCATGGTG+AGG + chr8_3:36837802-36837821 None:intergenic 50.0%
GCTAGAACAGGTGTACTGCA+TGG + chr8_3:36837807-36837826 None:intergenic 50.0%
! ACCTGTTCTAGCCACCCTTT+TGG - chr8_3:36837815-36837834 Msa1287100:intron 50.0%
! CCTGTTCTAGCCACCCTTTT+GGG - chr8_3:36837816-36837835 Msa1287100:intron 50.0%
AGCGACATATCCCAAAAGGG+TGG + chr8_3:36837829-36837848 None:intergenic 50.0%
!! TTCTTTTGCTGGGGCGTTAC+AGG - chr8_3:36838750-36838769 Msa1287100:intron 50.0%
CGTTTCGCAAGTACTCAGCA+TGG - chr8_3:36838889-36838908 Msa1287100:intron 50.0%
TTCTTACAGGCAGCAGCAGC+AGG - chr8_3:36835440-36835459 Msa1287100:CDS 55.0%
CGGTCGAAGTCGAAGATCGA+TGG - chr8_3:36835511-36835530 Msa1287100:intron 55.0%
AAGCGTACAGGGAGAAAGGC+TGG + chr8_3:36836141-36836160 None:intergenic 55.0%
CCGCTAACCCTCGGTTACAT+TGG - chr8_3:36836170-36836189 Msa1287100:intron 55.0%
TACGCCGAGCAGTGCTAATG+TGG + chr8_3:36837063-36837082 None:intergenic 55.0%
ACATTAGCACTGCTCGGCGT+AGG - chr8_3:36837062-36837081 Msa1287100:intron 55.0%
GGATTACCTGTGGCTGCTTC+TGG - chr8_3:36837125-36837144 Msa1287100:intron 55.0%
! ACCTGTGGCTGCTTCTGGTT+TGG - chr8_3:36837130-36837149 Msa1287100:intron 55.0%
GTGTGCAAGCATACCTGGCT+GGG - chr8_3:36837757-36837776 Msa1287100:intron 55.0%
CCCAAAAGGGTGGCTAGAAC+AGG + chr8_3:36837819-36837838 None:intergenic 55.0%
GGGATATGTCGCTGCATCCA+AGG - chr8_3:36837836-36837855 Msa1287100:intron 55.0%
AGCAAGCTGCCTCCAATCAC+TGG + chr8_3:36838685-36838704 None:intergenic 55.0%
GACAGCGGAGCAATGCTGTT+AGG - chr8_3:36839063-36839082 Msa1287100:intron 55.0%
AGCGGAGCAATGCTGTTAGG+AGG - chr8_3:36839066-36839085 Msa1287100:intron 55.0%
GGAGCAATGCTGTTAGGAGG+TGG - chr8_3:36839069-36839088 Msa1287100:intron 55.0%
!! CTGATGGAGGCATCGGTGAC+TGG - chr8_3:36835908-36835927 Msa1287100:intron 60.0%
!! GGAGGCATCGGTGACTGGTT+TGG - chr8_3:36835913-36835932 Msa1287100:intron 60.0%
!! GGCATCGGTGACTGGTTTGG+AGG - chr8_3:36835916-36835935 Msa1287100:intron 60.0%
!!! ATGGCAGGGGCTTTTGGCTC+TGG - chr8_3:36836267-36836286 Msa1287100:intron 60.0%
!!! GGCGTAGGAGCGTCTTTTGC+AGG - chr8_3:36837077-36837096 Msa1287100:intron 60.0%
GCCAAACCAGAAGCAGCCAC+AGG + chr8_3:36837134-36837153 None:intergenic 60.0%
GGTGTGCAAGCATACCTGGC+TGG - chr8_3:36837756-36837775 Msa1287100:intron 60.0%
GCTGTTCCCAGCTGCCACAA+TGG - chr8_3:36839113-36839132 Msa1287100:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 36834988 36839357 36834988 ID=Msa1287100;Name=Msa1287100
chr8_3 mRNA 36834988 36839357 36834988 ID=Msa1287100-mRNA-1;Parent=Msa1287100;Name=Msa1287100-mRNA-1;_AED=0.20;_eAED=0.20;_QI=136|0.83|0.92|1|0.58|0.61|13|194|278
chr8_3 exon 36834988 36835158 36834988 ID=Msa1287100-mRNA-1:exon:10659;Parent=Msa1287100-mRNA-1
chr8_3 exon 36835179 36835277 36835179 ID=Msa1287100-mRNA-1:exon:10658;Parent=Msa1287100-mRNA-1
chr8_3 exon 36835420 36835466 36835420 ID=Msa1287100-mRNA-1:exon:10657;Parent=Msa1287100-mRNA-1
chr8_3 exon 36836488 36836588 36836488 ID=Msa1287100-mRNA-1:exon:10656;Parent=Msa1287100-mRNA-1
chr8_3 exon 36836676 36836748 36836676 ID=Msa1287100-mRNA-1:exon:10655;Parent=Msa1287100-mRNA-1
chr8_3 exon 36837164 36837229 36837164 ID=Msa1287100-mRNA-1:exon:10654;Parent=Msa1287100-mRNA-1
chr8_3 exon 36838040 36838071 36838040 ID=Msa1287100-mRNA-1:exon:10653;Parent=Msa1287100-mRNA-1
chr8_3 exon 36838154 36838239 36838154 ID=Msa1287100-mRNA-1:exon:10652;Parent=Msa1287100-mRNA-1
chr8_3 exon 36838335 36838465 36838335 ID=Msa1287100-mRNA-1:exon:10651;Parent=Msa1287100-mRNA-1
chr8_3 exon 36838626 36838660 36838626 ID=Msa1287100-mRNA-1:exon:10650;Parent=Msa1287100-mRNA-1
chr8_3 exon 36838777 36838896 36838777 ID=Msa1287100-mRNA-1:exon:10649;Parent=Msa1287100-mRNA-1
chr8_3 exon 36839129 36839306 36839129 ID=Msa1287100-mRNA-1:exon:10648;Parent=Msa1287100-mRNA-1
chr8_3 exon 36839330 36839357 36839330 ID=Msa1287100-mRNA-1:exon:10647;Parent=Msa1287100-mRNA-1
chr8_3 five_prime_UTR 36839330 36839357 36839330 ID=Msa1287100-mRNA-1:five_prime_utr;Parent=Msa1287100-mRNA-1
chr8_3 five_prime_UTR 36839199 36839306 36839199 ID=Msa1287100-mRNA-1:five_prime_utr;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36839129 36839198 36839129 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36838777 36838896 36838777 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36838626 36838660 36838626 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36838335 36838465 36838335 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36838154 36838239 36838154 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36838040 36838071 36838040 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36837164 36837229 36837164 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36836676 36836748 36836676 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36836488 36836588 36836488 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36835420 36835466 36835420 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 CDS 36835202 36835277 36835202 ID=Msa1287100-mRNA-1:cds;Parent=Msa1287100-mRNA-1
chr8_3 three_prime_UTR 36835179 36835201 36835179 ID=Msa1287100-mRNA-1:three_prime_utr;Parent=Msa1287100-mRNA-1
chr8_3 three_prime_UTR 36834988 36835158 36834988 ID=Msa1287100-mRNA-1:three_prime_utr;Parent=Msa1287100-mRNA-1
Gene Sequence

>Msa1287100

ATGAGTTTTAGTATGAACATTCTTCAATCTTGCACAATCATAAATTCAACTCAACTTAACCCGATTCATGGCAGCAGCAGCAGGCATATTGTTCCCACCAAAAAAGTTACTACTGAACATGAAAATTGTCTTCGGTCGAAGTCGAAGATCGATGGAAATAGTATTATGACATTCGTTGGTGGATTAACAGCTGCACAATTGGTTGCTCCAGTCACTGCAAAAGCTGAAATGGTTGCTCCTGTTTTTACTTTGGCTGATGGAGGCATCGGTGACTGGTTTGGAGGCATTCTATTTTCAGCCGGACAACAGGCCAATGAAGCAGTTCTGGACCAACTATCGTCCCTAAGTTTTACTAGTTTGGCTGTAATTTATGGGGCAGGACTTGTAACCAGCCTTTCTCCCTGTACGCTTAGTGTGTTACCGCTAACCCTCGGTTACATTGGGGCTTTTGGCTCTGGAAAAAGCAGAGCACAGATTGGTCAAGGATTACCTGTGGCTGCTTCTGGTTTGGCTGTAATTATGGGTCTGAACCTTCTTGAGATCATTGAATTACAGCTCCCCTCATTCTTCGACAGTTTTGATCCAAAATCAGTTGCCGCCAATTTTCCATCAAGTGTGCAAGCATACCTGGCTGGGCTTACATTTGCATTAGCTGCCTCACCATGCAGTACACCTGTTCTAGCCACCCTTTTGGGATATGTCGCTGCATCCAAGAGCTTGCTTTCGTTTCGCAAGTACTCAGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGAGGTGGTGTATATACCTTCTTAGATAGGCTGTTCCCAGCTGCCACAATGGTAATGTAG

Protein sequence

>Msa1287100

MSFSMNILQSCTIINSTQLNPIHGSSSRHIVPTKKVTTEHENCLRSKSKIDGNSIMTFVGGLTAAQLVAPVTAKAEMVAPVFTLADGGIGDWFGGILFSAGQQANEAVLDQLSSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIGQGLPVAASGLAVIMGLNLLEIIELQLPSFFDSFDPKSVAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKSLLSFRKYSAWINPISGAMLLGGGVYTFLDRLFPAATMVM*