AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137010 MtrunA17_Chr1g0208921 94.509 346 10 4 1 340 1 343 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137010 AT2G01110.1 73.770 305 66 3 36 340 50 340 1.64e-151 429

Find 105 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTCGTGGTGCAGGTTTC+TGG 0.175531 1_3:-69275833 Msa0137010:intron
CTTCTAGCAGCACCATTATT+AGG 0.229476 1_3:-69274664 Msa0137010:CDS
AGGAGTTGGAGGAAGCATTT+TGG 0.229964 1_3:-69276501 Msa0137010:CDS
GCCAAGGCCTGGTGGAATTT+AGG 0.240581 1_3:+69274440 None:intergenic
AGAATCTTTATATCAGTTCT+AGG 0.249354 1_3:-69276521 Msa0137010:CDS
ACCGATTATACAACTTCTAT+TGG 0.263487 1_3:-69274803 Msa0137010:CDS
TGCTTAAACTGAATTTCTTT+TGG 0.275876 1_3:+69274578 None:intergenic
TTCCACCAGGCCTTGGCATT+TGG 0.296857 1_3:-69274434 Msa0137010:three_prime_UTR
CAGTACAGGCTTGTCTTTCC+AGG 0.298487 1_3:-69275549 Msa0137010:intron
CGTTAGACCTGGAATTATAA+AGG 0.303877 1_3:+69275760 None:intergenic
GGACAACTTGGATTGGTTAC+TGG 0.310168 1_3:-69274781 Msa0137010:CDS
AGAAGAAATAATAAGAGTTT+TGG 0.312117 1_3:-69277383 Msa0137010:CDS
TCAATACTTTGAGTTTGTTC+TGG 0.314656 1_3:-69275582 Msa0137010:CDS
ATGAATATCCTTCCTCAGTT+CGG 0.317891 1_3:-69277461 Msa0137010:CDS
TGGATATTGTGGCCTTCTCT+TGG 0.323792 1_3:-69275813 Msa0137010:CDS
CCCACTCAACAACCCCTATT+CGG 0.325105 1_3:-69277427 Msa0137010:CDS
ATCATAGCCTTTATAATTCC+AGG 0.326206 1_3:-69275767 Msa0137010:CDS
GCATGGATGGTCAAACTTGC+TGG 0.332429 1_3:-69274625 Msa0137010:CDS
CGGAATAACCTTCTCCTACT+TGG 0.346691 1_3:-69275678 Msa0137010:CDS
AGAGGGAAGCTGACCCGAAT+AGG 0.356442 1_3:+69277413 None:intergenic
AACCTTCTCCTACTTGGTTC+TGG 0.358897 1_3:-69275672 Msa0137010:CDS
TGAATATCCTTCCTCAGTTC+GGG 0.363168 1_3:-69277460 Msa0137010:CDS
TCCCATGCCGTGTTTATGTT+TGG 0.370287 1_3:+69277505 None:intergenic
TTTATATCAGTTCTAGGAGT+TGG 0.372808 1_3:-69276515 Msa0137010:CDS
TCCTAAATTCCACCAGGCCT+TGG 0.374237 1_3:-69274441 Msa0137010:three_prime_UTR
TTCTTTGTCGAAGCTCTTCA+AGG 0.382875 1_3:+69276540 None:intergenic
GAGGGAAGCTGACCCGAATA+GGG 0.387231 1_3:+69277414 None:intergenic
CAAGTAGGAGAAGGTTATTC+CGG 0.387764 1_3:+69275679 None:intergenic
TCAGGAAGAAGCTCTTTATC+AGG 0.389696 1_3:+69276590 None:intergenic
CCCAATAGAAGTTGTATAAT+CGG 0.391969 1_3:+69274802 None:intergenic
CCGATTATACAACTTCTATT+GGG 0.394706 1_3:-69274802 Msa0137010:CDS
ACATAAACACGGCATGGGAT+TGG 0.398979 1_3:-69277501 Msa0137010:exon
TAGGGGTTGTTGAGTGGGTT+CGG 0.400683 1_3:+69277432 None:intergenic
GGTTCTCGTTAGATACGATT+TGG 0.401877 1_3:+69277526 None:intergenic
CATAAACACGGCATGGGATT+GGG 0.404732 1_3:-69277500 Msa0137010:exon
GGATATTGTGGCCTTCTCTT+GGG 0.412223 1_3:-69275812 Msa0137010:CDS
CAACTTCTATTGGGACAACT+TGG 0.415318 1_3:-69274793 Msa0137010:CDS
ATGATTTCATAGAGAATGAT+AGG 0.415949 1_3:+69275785 None:intergenic
ATGCTCATTTCTTTATCATC+AGG 0.420227 1_3:+69276572 None:intergenic
CCACTCAACAACCCCTATTC+GGG 0.424261 1_3:-69277426 Msa0137010:CDS
TAGTACTAAGCTGTTGTTGT+TGG 0.434035 1_3:+69277318 None:intergenic
CTGGTTCTTATGTTCAGTAC+AGG 0.435069 1_3:-69275563 Msa0137010:CDS
CATACCGGGTCTTTCTTCAA+TGG 0.442015 1_3:+69277274 None:intergenic
TCGTTAGATACGATTTGGTT+TGG 0.442344 1_3:+69277531 None:intergenic
AGATTTCTTCAGTTAGCTCC+TGG 0.442494 1_3:-69276413 Msa0137010:CDS
GTCTTTACCTAGGTGGTGCA+TGG 0.454573 1_3:-69274642 Msa0137010:CDS
GAGACCGGATGCTATCAGTT+TGG 0.466801 1_3:-69274759 Msa0137010:CDS
CCTAGGTAAAGACCTAATAA+TGG 0.468369 1_3:+69274652 None:intergenic
CACCAGGCCTTGGCATTTGG+AGG 0.472494 1_3:-69274431 None:intergenic
TAAATCAATTAATAGAATAC+AGG 0.474864 1_3:+69274489 None:intergenic
CTGACACCCTCTGATTGAAC+AGG 0.476792 1_3:+69276434 None:intergenic
ACTGATGAGCCTAAAACAAT+TGG 0.477239 1_3:+69275713 None:intergenic
AACTGAGGAAGGATATTCAT+AGG 0.479717 1_3:+69277464 None:intergenic
TTCTTTGTCAATTATGCTGA+AGG 0.481146 1_3:-69275632 Msa0137010:CDS
TTACCTAGGTGGTGCATGGA+TGG 0.481523 1_3:-69274638 Msa0137010:CDS
CTTTCAGCTTTCGTTAGACC+TGG 0.483102 1_3:+69275749 None:intergenic
TCTATTGGGACAACTTGGAT+TGG 0.484052 1_3:-69274788 Msa0137010:CDS
ACAAAGAAATTTAATGCTGC+GGG 0.490001 1_3:+69275647 None:intergenic
AGTACTACTTCAACTAGGCT+TGG 0.499566 1_3:-69277302 Msa0137010:CDS
ATATCAGTTCTAGGAGTTGG+AGG 0.501945 1_3:-69276512 Msa0137010:CDS
CCGAATAGGGGTTGTTGAGT+GGG 0.511640 1_3:+69277427 None:intergenic
CCCGAATAGGGGTTGTTGAG+TGG 0.512048 1_3:+69277426 None:intergenic
TACCTCCAAATGCCAAGGCC+TGG 0.522561 1_3:+69274429 None:intergenic
AAACTCAAAGTATTGATCAA+TGG 0.524905 1_3:+69275589 None:intergenic
GACAAAGAAATTTAATGCTG+CGG 0.531903 1_3:+69275646 None:intergenic
ACCTCCAAACTGATAGCATC+CGG 0.541278 1_3:+69274755 None:intergenic
ATACAGGAAGAGTAATGCTC+TGG 0.541662 1_3:+69274505 None:intergenic
AACCAAACATAAACACGGCA+TGG 0.543708 1_3:-69277507 Msa0137010:exon
TTGGATTGGTTACTGGAGAC+CGG 0.547880 1_3:-69274774 Msa0137010:CDS
TGGTATAGGTGAAGAAACAT+TGG 0.554885 1_3:-69276663 Msa0137010:intron
GTCTAACGAAAGCTGAAAGA+AGG 0.555459 1_3:-69275745 Msa0137010:CDS
TGAAGCTCCTGTTCAATCAG+AGG 0.565387 1_3:-69276441 Msa0137010:CDS
GTTTGGAGGTACGTTGTAGT+CGG 0.572084 1_3:-69274742 Msa0137010:CDS
CTCCAAATGCCAAGGCCTGG+TGG 0.584016 1_3:+69274432 None:intergenic
CTGTCTGAGTTCATCATCAA+CGG 0.587352 1_3:+69277343 None:intergenic
ACCGGATGCTATCAGTTTGG+AGG 0.588400 1_3:-69274756 Msa0137010:CDS
GCTAGAAGAACTTGAGTGAG+AGG 0.588816 1_3:+69274679 None:intergenic
GTGCAGGTTTCTGGATATTG+TGG 0.589310 1_3:-69275824 Msa0137010:intron
TGATAGGACTTCCCAAGAGA+AGG 0.590331 1_3:+69275801 None:intergenic
CGTTGTAGTCGGAGCAGTAG+TGG 0.590777 1_3:-69274731 Msa0137010:CDS
CATGGATGGTCAAACTTGCT+GGG 0.591514 1_3:-69274624 Msa0137010:CDS
GGAGCAACCCGAACTGAGGA+AGG 0.591542 1_3:+69277453 None:intergenic
TATTTCTTCTTCGACAGAGA+GGG 0.592538 1_3:+69277396 None:intergenic
ACCGGGTCTTTCTTCAATGG+CGG 0.601351 1_3:+69277277 None:intergenic
ACCAAACATAAACACGGCAT+GGG 0.602653 1_3:-69277506 Msa0137010:exon
AGGAAGAGTAATGCTCTGGT+AGG 0.605861 1_3:+69274509 None:intergenic
CCATTATTAGGTCTTTACCT+AGG 0.610016 1_3:-69274652 Msa0137010:CDS
GAAGCTCCTGTTCAATCAGA+GGG 0.614527 1_3:-69276440 Msa0137010:CDS
AGCTTAGTACTACTTCAACT+AGG 0.621939 1_3:-69277307 Msa0137010:CDS
TTATTAGGTCTTTACCTAGG+TGG 0.622151 1_3:-69274649 Msa0137010:CDS
AGTTATTCCTAAATTCCACC+AGG 0.623589 1_3:-69274447 Msa0137010:three_prime_UTR
AGGAATACCTCCAAATGCCA+AGG 0.623816 1_3:+69274424 None:intergenic
AACTTGAGTGAGAGGATCTG+TGG 0.626725 1_3:+69274687 None:intergenic
TACCAGAACCAAGTAGGAGA+AGG 0.629321 1_3:+69275670 None:intergenic
AAGGATATTCATAGGAACAG+TGG 0.630446 1_3:+69277472 None:intergenic
TCCGCCATTGAAGAAAGACC+CGG 0.632868 1_3:-69277278 Msa0137010:intron
AGGGAAGCTGACCCGAATAG+GGG 0.633526 1_3:+69277415 None:intergenic
TGACCATCCATGCACCACCT+AGG 0.640535 1_3:+69274635 None:intergenic
TTATTTCTTCTTCGACAGAG+AGG 0.655544 1_3:+69277395 None:intergenic
TGCGGGTACCAGAACCAAGT+AGG 0.676319 1_3:+69275664 None:intergenic
GTTCGGAGCAACCCGAACTG+AGG 0.682822 1_3:+69277449 None:intergenic
GATATTCATAGGAACAGTGG+TGG 0.683366 1_3:+69277475 None:intergenic
TGAGTGAGAGGATCTGTGGA+TGG 0.685947 1_3:+69274691 None:intergenic
ACGAGAACCAAACATAAACA+CGG 0.707832 1_3:-69277512 Msa0137010:five_prime_UTR
AAGGTGCTGTTGAATCACTG+TGG 0.719291 1_3:-69275613 Msa0137010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAGTTTGTTTTTATT+GGG - chr1_3:69275900-69275919 Msa0137010:intron 10.0%
!!! TTTTAGTTACTATATATTAT+AGG + chr1_3:69276980-69276999 None:intergenic 10.0%
!!! CTATTTAGTATTTTCATATA+AGG - chr1_3:69275033-69275052 Msa0137010:intron 15.0%
!!! TAAAAATTTTACCTTTAAAG+TGG + chr1_3:69275691-69275710 None:intergenic 15.0%
!! CAATAAAAACAAACTAATTA+TGG + chr1_3:69275901-69275920 None:intergenic 15.0%
!!! CATAATTAGTTTGTTTTTAT+TGG - chr1_3:69275899-69275918 Msa0137010:intron 15.0%
!!! TAATTAGTTTGTTTTTATTG+GGG - chr1_3:69275901-69275920 Msa0137010:intron 15.0%
!! TTACATTCATAATTAATCAT+TGG - chr1_3:69276035-69276054 Msa0137010:intron 15.0%
!! TGTATTCTATATTTATCATT+GGG + chr1_3:69276639-69276658 None:intergenic 15.0%
!! TTGTATTCTATATTTATCAT+TGG + chr1_3:69276640-69276659 None:intergenic 15.0%
!! TAAATCAATTAATAGAATAC+AGG + chr1_3:69277578-69277597 None:intergenic 15.0%
!!! AGAAGAAATAATAAGAGTTT+TGG - chr1_3:69274681-69274700 Msa0137010:CDS 20.0%
!! AATGAAGTGAAGAAAAAATT+TGG + chr1_3:69274846-69274865 None:intergenic 20.0%
!!! AAATTTTTTCTTCACTTCAT+TGG - chr1_3:69274845-69274864 Msa0137010:intron 20.0%
!!! AGAAACATTGGAAAATTTTA+AGG - chr1_3:69275413-69275432 Msa0137010:intron 20.0%
!!! ATTTTTACTCAAAATATCTC+CGG - chr1_3:69275704-69275723 Msa0137010:CDS 20.0%
!!! GAATGTAATATTTTATTTCC+TGG - chr1_3:69275763-69275782 Msa0137010:CDS 20.0%
!!! AAATTTGACTTCTCTAAAAT+AGG + chr1_3:69276104-69276123 None:intergenic 20.0%
!!! ATTTTAGAGAAGTCAAATTT+AGG - chr1_3:69276104-69276123 Msa0137010:intron 20.0%
!!! TTCCTTTCTTTTTGAATATA+TGG - chr1_3:69276562-69276581 Msa0137010:CDS 20.0%
!! TACCATATATTCAAAAAGAA+AGG + chr1_3:69276567-69276586 None:intergenic 20.0%
!! TAGTAACTAAAAAAAAGACT+TGG - chr1_3:69276988-69277007 Msa0137010:intron 20.0%
!!! AATTTCTTTTGGTAATATGT+GGG + chr1_3:69277478-69277497 None:intergenic 20.0%
!!! ATTTTTATGTAAATTCACAC+AGG - chr1_3:69277510-69277529 Msa0137010:exon 20.0%
! ATTATTTGAGCTTATATCCT+TGG + chr1_3:69275272-69275291 None:intergenic 25.0%
!!! TTGGAAAATTTTAAGGAAGA+TGG - chr1_3:69275420-69275439 Msa0137010:intron 25.0%
! AGAATCTTTATATCAGTTCT+AGG - chr1_3:69275543-69275562 Msa0137010:intron 25.0%
!! CTTTGCATTTTCAAAAGATT+TGG - chr1_3:69275590-69275609 Msa0137010:CDS 25.0%
!! ATTTTTCTTCACCACTTTAA+AGG - chr1_3:69275677-69275696 Msa0137010:CDS 25.0%
!! TTTTTACTCAAAATATCTCC+GGG - chr1_3:69275705-69275724 Msa0137010:CDS 25.0%
! AAACTAATTATGGCAGAAAA+TGG + chr1_3:69275891-69275910 None:intergenic 25.0%
! AGTTTGATCATGATTTAGAT+GGG + chr1_3:69276200-69276219 None:intergenic 25.0%
! TAGTTTGATCATGATTTAGA+TGG + chr1_3:69276201-69276220 None:intergenic 25.0%
! TGATCAAACTAATATTGTTG+TGG - chr1_3:69276210-69276229 Msa0137010:intron 25.0%
! ATGATTTCATAGAGAATGAT+AGG + chr1_3:69276282-69276301 None:intergenic 25.0%
!!! AAACTCAAAGTATTGATCAA+TGG + chr1_3:69276478-69276497 None:intergenic 25.0%
! TATATTTATCATTGGGTCAA+TGG + chr1_3:69276632-69276651 None:intergenic 25.0%
! ATTCCTAACAGAGATATATT+GGG + chr1_3:69276745-69276764 None:intergenic 25.0%
! AATTCCTAACAGAGATATAT+TGG + chr1_3:69276746-69276765 None:intergenic 25.0%
!!! CTTGAAAGTTTTAAATGACT+TGG - chr1_3:69276905-69276924 Msa0137010:intron 25.0%
!!! GAATTTCTTTTGGTAATATG+TGG + chr1_3:69277479-69277498 None:intergenic 25.0%
!! TGCTTAAACTGAATTTCTTT+TGG + chr1_3:69277489-69277508 None:intergenic 25.0%
!! TGATATTTTTGCACTTCACA+TGG + chr1_3:69274485-69274504 None:intergenic 30.0%
ATGTGAAGTGCAAAAATATC+AGG - chr1_3:69274484-69274503 Msa0137010:three_prime_UTR 30.0%
TTTGGTGAATTGAGAGAAAA+TGG + chr1_3:69274828-69274847 None:intergenic 30.0%
GTAAACCTTGTGAAAATAAG+CGG - chr1_3:69275082-69275101 Msa0137010:intron 30.0%
TAAACCTTGTGAAAATAAGC+GGG - chr1_3:69275083-69275102 Msa0137010:intron 30.0%
! AGCTTATTTGAGTTATGTAC+TGG + chr1_3:69275174-69275193 None:intergenic 30.0%
CTCAAATAAGCTAATTCGAA+CGG - chr1_3:69275182-69275201 Msa0137010:intron 30.0%
TCAAATAAGCTAATTCGAAC+GGG - chr1_3:69275183-69275202 Msa0137010:intron 30.0%
TCATTAACTAAGAGTCTGTT+TGG + chr1_3:69275301-69275320 None:intergenic 30.0%
GACAATAAAGATATGCTTGA+TGG - chr1_3:69275381-69275400 Msa0137010:intron 30.0%
! AAAGATATGCTTGATGGTAT+AGG - chr1_3:69275387-69275406 Msa0137010:intron 30.0%
ATGCTCATTTCTTTATCATC+AGG + chr1_3:69275495-69275514 None:intergenic 30.0%
!! TTTATATCAGTTCTAGGAGT+TGG - chr1_3:69275549-69275568 Msa0137010:intron 30.0%
!!! CATTTTCAAAAGATTTGGTG+AGG - chr1_3:69275595-69275614 Msa0137010:CDS 30.0%
! TTTTACTCAAAATATCTCCG+GGG - chr1_3:69275706-69275725 Msa0137010:CDS 30.0%
TATTACATTCACAACTCACT+AGG + chr1_3:69275753-69275772 None:intergenic 30.0%
GCATTTCATGTGAAGTTTAA+AGG - chr1_3:69275789-69275808 Msa0137010:CDS 30.0%
! TCTAAAATAGGTAGTTGGTA+AGG + chr1_3:69276092-69276111 None:intergenic 30.0%
!! ACTTCTCTAAAATAGGTAGT+TGG + chr1_3:69276097-69276116 None:intergenic 30.0%
TTAGAGAAGTCAAATTTAGG+AGG - chr1_3:69276107-69276126 Msa0137010:intron 30.0%
TAGAGAAGTCAAATTTAGGA+GGG - chr1_3:69276108-69276127 Msa0137010:intron 30.0%
GTAATGGTTATATCACACAA+AGG + chr1_3:69276166-69276185 None:intergenic 30.0%
ATCATAGCCTTTATAATTCC+AGG - chr1_3:69276297-69276316 Msa0137010:intron 30.0%
! AAAGCTGAAAGAAGGTTTTT+AGG - chr1_3:69276327-69276346 Msa0137010:intron 30.0%
! AAGCTGAAAGAAGGTTTTTA+GGG - chr1_3:69276328-69276347 Msa0137010:intron 30.0%
!!! TTTTTAGGGCCAATTGTTTT+AGG - chr1_3:69276342-69276361 Msa0137010:intron 30.0%
ACAAAGAAATTTAATGCTGC+GGG + chr1_3:69276420-69276439 None:intergenic 30.0%
GACAAAGAAATTTAATGCTG+CGG + chr1_3:69276421-69276440 None:intergenic 30.0%
TTCTTTGTCAATTATGCTGA+AGG - chr1_3:69276432-69276451 Msa0137010:CDS 30.0%
! TCAATACTTTGAGTTTGTTC+TGG - chr1_3:69276482-69276501 Msa0137010:CDS 30.0%
! AAAGAAAGGAAGTACAAAAC+AGG + chr1_3:69276553-69276572 None:intergenic 30.0%
TATCCCAATATATCTCTGTT+AGG - chr1_3:69276739-69276758 Msa0137010:intron 30.0%
AATGTTTGTAATCGATCATC+TGG - chr1_3:69276827-69276846 Msa0137010:intron 30.0%
TATTACTTGATATGAGACGT+GGG + chr1_3:69276878-69276897 None:intergenic 30.0%
ATATTACTTGATATGAGACG+TGG + chr1_3:69276879-69276898 None:intergenic 30.0%
! CTTTCTTTTCTTCCTAAGTT+TGG - chr1_3:69277202-69277221 Msa0137010:intron 30.0%
ACCGATTATACAACTTCTAT+TGG - chr1_3:69277261-69277280 Msa0137010:intron 30.0%
CCCAATAGAAGTTGTATAAT+CGG + chr1_3:69277265-69277284 None:intergenic 30.0%
CCGATTATACAACTTCTATT+GGG - chr1_3:69277262-69277281 Msa0137010:intron 30.0%
!! TCGTTAGATACGATTTGGTT+TGG + chr1_3:69274536-69274555 None:intergenic 35.0%
ACGAGAACCAAACATAAACA+CGG - chr1_3:69274552-69274571 Msa0137010:three_prime_UTR 35.0%
AAGGATATTCATAGGAACAG+TGG + chr1_3:69274595-69274614 None:intergenic 35.0%
AACTGAGGAAGGATATTCAT+AGG + chr1_3:69274603-69274622 None:intergenic 35.0%
ATGAATATCCTTCCTCAGTT+CGG - chr1_3:69274603-69274622 Msa0137010:exon 35.0%
TATTTCTTCTTCGACAGAGA+GGG + chr1_3:69274671-69274690 None:intergenic 35.0%
! TTATTTCTTCTTCGACAGAG+AGG + chr1_3:69274672-69274691 None:intergenic 35.0%
TAGTACTAAGCTGTTGTTGT+TGG + chr1_3:69274749-69274768 None:intergenic 35.0%
AGCTTAGTACTACTTCAACT+AGG - chr1_3:69274757-69274776 Msa0137010:CDS 35.0%
! TGGATTTTGCTCTAACATAC+CGG + chr1_3:69274808-69274827 None:intergenic 35.0%
!! TTCACTTCATTGGTCTTGTT+TGG - chr1_3:69274855-69274874 Msa0137010:intron 35.0%
! ACTGCAGTTTAGAATAGCTT+AGG + chr1_3:69274946-69274965 None:intergenic 35.0%
TTGGATAAGCACTTATGAGA+CGG + chr1_3:69275253-69275272 None:intergenic 35.0%
TGGTATAGGTGAAGAAACAT+TGG - chr1_3:69275401-69275420 Msa0137010:intron 35.0%
TGGTAAGGTGAGAAAATCAA+AGG + chr1_3:69276077-69276096 None:intergenic 35.0%
GGTTATATCACACAAAGGTT+GGG + chr1_3:69276161-69276180 None:intergenic 35.0%
TGGTTATATCACACAAAGGT+TGG + chr1_3:69276162-69276181 None:intergenic 35.0%
ATGGGTATACACTACAGTAA+TGG + chr1_3:69276182-69276201 None:intergenic 35.0%
CGTTAGACCTGGAATTATAA+AGG + chr1_3:69276307-69276326 None:intergenic 35.0%
ACTGATGAGCCTAAAACAAT+TGG + chr1_3:69276354-69276373 None:intergenic 35.0%
AACAGGAAGAAGAAATTACC+TGG + chr1_3:69276536-69276555 None:intergenic 35.0%
ATTCGTAGCTATGGGTAATA+TGG - chr1_3:69276715-69276734 Msa0137010:intron 35.0%
! TTGCAGTATTGCTATTGAGT+TGG - chr1_3:69276784-69276803 Msa0137010:intron 35.0%
TTGTAATCGATCATCTGGAT+TGG - chr1_3:69276832-69276851 Msa0137010:intron 35.0%
TGTAATCGATCATCTGGATT+GGG - chr1_3:69276833-69276852 Msa0137010:intron 35.0%
TTTATCACTGTCGAACAATG+TGG - chr1_3:69276944-69276963 Msa0137010:intron 35.0%
!!! TATCACGTTCTTTTGGAGTT+TGG - chr1_3:69277067-69277086 Msa0137010:intron 35.0%
! CGTAAGATTTTACCTTGATG+TGG - chr1_3:69277110-69277129 Msa0137010:intron 35.0%
CTTCCTAAGTTTGGTTGTAA+TGG - chr1_3:69277211-69277230 Msa0137010:intron 35.0%
ATGCCATTACAACCAAACTT+AGG + chr1_3:69277217-69277236 None:intergenic 35.0%
CTAAGCCATCTTGTATTTGT+AGG - chr1_3:69277237-69277256 Msa0137010:intron 35.0%
CCTAGGTAAAGACCTAATAA+TGG + chr1_3:69277415-69277434 None:intergenic 35.0%
CCATTATTAGGTCTTTACCT+AGG - chr1_3:69277412-69277431 Msa0137010:CDS 35.0%
TTATTAGGTCTTTACCTAGG+TGG - chr1_3:69277415-69277434 Msa0137010:CDS 35.0%
AGTTATTCCTAAATTCCACC+AGG - chr1_3:69277617-69277636 Msa0137010:five_prime_UTR 35.0%
GGTTCTCGTTAGATACGATT+TGG + chr1_3:69274541-69274560 None:intergenic 40.0%
AACCAAACATAAACACGGCA+TGG - chr1_3:69274557-69274576 Msa0137010:three_prime_UTR 40.0%
ACCAAACATAAACACGGCAT+GGG - chr1_3:69274558-69274577 Msa0137010:three_prime_UTR 40.0%
GATATTCATAGGAACAGTGG+TGG + chr1_3:69274592-69274611 None:intergenic 40.0%
TGAATATCCTTCCTCAGTTC+GGG - chr1_3:69274604-69274623 Msa0137010:exon 40.0%
CTGTCTGAGTTCATCATCAA+CGG + chr1_3:69274724-69274743 None:intergenic 40.0%
AGTACTACTTCAACTAGGCT+TGG - chr1_3:69274762-69274781 Msa0137010:CDS 40.0%
! GGATTTTGCTCTAACATACC+GGG + chr1_3:69274807-69274826 None:intergenic 40.0%
!! GTTACCCGCTTATTTTCACA+AGG + chr1_3:69275090-69275109 None:intergenic 40.0%
CGGGTAACAACTTACAGATA+AGG - chr1_3:69275102-69275121 Msa0137010:intron 40.0%
GTCTCATAAGTGCTTATCCA+AGG - chr1_3:69275252-69275271 Msa0137010:intron 40.0%
TCAGGAAGAAGCTCTTTATC+AGG + chr1_3:69275477-69275496 None:intergenic 40.0%
TTCTTTGTCGAAGCTCTTCA+AGG + chr1_3:69275527-69275546 None:intergenic 40.0%
!! ATATCAGTTCTAGGAGTTGG+AGG - chr1_3:69275552-69275571 Msa0137010:CDS 40.0%
AGATTTCTTCAGTTAGCTCC+TGG - chr1_3:69275651-69275670 Msa0137010:CDS 40.0%
GTGGTGAAGAAAAATTCACC+AGG + chr1_3:69275672-69275691 None:intergenic 40.0%
GAAGGAAGTAAAAAACACCC+CGG + chr1_3:69275726-69275745 None:intergenic 40.0%
CATTCACAACTCACTAGGTA+GGG + chr1_3:69275748-69275767 None:intergenic 40.0%
ACATTCACAACTCACTAGGT+AGG + chr1_3:69275749-69275768 None:intergenic 40.0%
!! GTTTAAAGGTGCTATACCGT+TGG - chr1_3:69275803-69275822 Msa0137010:CDS 40.0%
! AAACTCTGTCAAGTTGCCAA+CGG + chr1_3:69275822-69275841 None:intergenic 40.0%
! CAACTTGACAGAGTTTTCCA+GGG - chr1_3:69275826-69275845 Msa0137010:intron 40.0%
AAGACTTTGATCTTTCACCC+TGG + chr1_3:69275846-69275865 None:intergenic 40.0%
CGATCCAGCTACTCTTAAAT+AGG - chr1_3:69275924-69275943 Msa0137010:intron 40.0%
GTTGCCTATTTAAGAGTAGC+TGG + chr1_3:69275931-69275950 None:intergenic 40.0%
AGGCAACTCACTCTAAATTG+AGG - chr1_3:69275944-69275963 Msa0137010:intron 40.0%
CTAATATTGTTGTGGTCTCG+TGG - chr1_3:69276218-69276237 Msa0137010:intron 40.0%
GTCTAACGAAAGCTGAAAGA+AGG - chr1_3:69276319-69276338 Msa0137010:intron 40.0%
! TCATCAGTTCTTTTCTACGC+CGG - chr1_3:69276366-69276385 Msa0137010:intron 40.0%
CAAGTAGGAGAAGGTTATTC+CGG + chr1_3:69276388-69276407 None:intergenic 40.0%
! CTGGTTCTTATGTTCAGTAC+AGG - chr1_3:69276501-69276520 Msa0137010:CDS 40.0%
!! ATCAATCGGTGTCAACTAGA+AGG + chr1_3:69276596-69276615 None:intergenic 40.0%
!! TTTTTAAGCATGCCTGCATC+AGG - chr1_3:69276689-69276708 Msa0137010:intron 40.0%
ATCAGGTCAATTCGTAGCTA+TGG - chr1_3:69276706-69276725 Msa0137010:intron 40.0%
TCAGGTCAATTCGTAGCTAT+GGG - chr1_3:69276707-69276726 Msa0137010:intron 40.0%
! GAGTGCTTATCACGTTCTTT+TGG - chr1_3:69277060-69277079 Msa0137010:intron 40.0%
TTACCTTGATGTGGTTCTTG+AGG - chr1_3:69277119-69277138 Msa0137010:intron 40.0%
TTTCCTCAAGAACCACATCA+AGG + chr1_3:69277125-69277144 None:intergenic 40.0%
CGGTACCTACAAATACAAGA+TGG + chr1_3:69277245-69277264 None:intergenic 40.0%
CAACTTCTATTGGGACAACT+TGG - chr1_3:69277271-69277290 Msa0137010:intron 40.0%
TCTATTGGGACAACTTGGAT+TGG - chr1_3:69277276-69277295 Msa0137010:intron 40.0%
CTTCTAGCAGCACCATTATT+AGG - chr1_3:69277400-69277419 Msa0137010:CDS 40.0%
ATACAGGAAGAGTAATGCTC+TGG + chr1_3:69277562-69277581 None:intergenic 40.0%
TGCAAAAATATCAGGCGACG+AGG - chr1_3:69274492-69274511 Msa0137010:three_prime_UTR 45.0%
TCCCATGCCGTGTTTATGTT+TGG + chr1_3:69274562-69274581 None:intergenic 45.0%
ACATAAACACGGCATGGGAT+TGG - chr1_3:69274563-69274582 Msa0137010:three_prime_UTR 45.0%
CATAAACACGGCATGGGATT+GGG - chr1_3:69274564-69274583 Msa0137010:three_prime_UTR 45.0%
CATACCGGGTCTTTCTTCAA+TGG + chr1_3:69274793-69274812 None:intergenic 45.0%
!!! AGGAGTTGGAGGAAGCATTT+TGG - chr1_3:69275563-69275582 Msa0137010:CDS 45.0%
!!! GGAGTTGGAGGAAGCATTTT+GGG - chr1_3:69275564-69275583 Msa0137010:CDS 45.0%
TGAAGCTCCTGTTCAATCAG+AGG - chr1_3:69275623-69275642 Msa0137010:CDS 45.0%
GAAGCTCCTGTTCAATCAGA+GGG - chr1_3:69275624-69275643 Msa0137010:CDS 45.0%
CTTCACATGAAATGCATGCC+AGG + chr1_3:69275784-69275803 None:intergenic 45.0%
! GCAACTTGACAGAGTTTTCC+AGG - chr1_3:69275825-69275844 Msa0137010:intron 45.0%
! GTGCAGGTTTCTGGATATTG+TGG - chr1_3:69276240-69276259 Msa0137010:intron 45.0%
TGGATATTGTGGCCTTCTCT+TGG - chr1_3:69276251-69276270 Msa0137010:intron 45.0%
GGATATTGTGGCCTTCTCTT+GGG - chr1_3:69276252-69276271 Msa0137010:intron 45.0%
TGATAGGACTTCCCAAGAGA+AGG + chr1_3:69276266-69276285 None:intergenic 45.0%
CTTTCAGCTTTCGTTAGACC+TGG + chr1_3:69276318-69276337 None:intergenic 45.0%
CGGAATAACCTTCTCCTACT+TGG - chr1_3:69276386-69276405 Msa0137010:intron 45.0%
AACCTTCTCCTACTTGGTTC+TGG - chr1_3:69276392-69276411 Msa0137010:CDS 45.0%
TACCAGAACCAAGTAGGAGA+AGG + chr1_3:69276397-69276416 None:intergenic 45.0%
!! AAGGTGCTGTTGAATCACTG+TGG - chr1_3:69276451-69276470 Msa0137010:CDS 45.0%
GTCGTGTGGCAAGTATCAAT+CGG + chr1_3:69276610-69276629 None:intergenic 45.0%
! GATCATCTGGATTGGGACAT+GGG - chr1_3:69276840-69276859 Msa0137010:intron 45.0%
GGATTGGGACATGGGTATAA+CGG - chr1_3:69276848-69276867 Msa0137010:intron 45.0%
GATTGGGACATGGGTATAAC+GGG - chr1_3:69276849-69276868 Msa0137010:intron 45.0%
ATTGGGACATGGGTATAACG+GGG - chr1_3:69276850-69276869 Msa0137010:intron 45.0%
CCTTAAAAGCCAGCTCTCAA+GGG + chr1_3:69277021-69277040 None:intergenic 45.0%
!!! CCTTGAGAGCTGGCTTTTAA+GGG - chr1_3:69277019-69277038 Msa0137010:intron 45.0%
!! GGACAACTTGGATTGGTTAC+TGG - chr1_3:69277283-69277302 Msa0137010:CDS 45.0%
!! TTGGATTGGTTACTGGAGAC+CGG - chr1_3:69277290-69277309 Msa0137010:CDS 45.0%
ACCTCCAAACTGATAGCATC+CGG + chr1_3:69277312-69277331 None:intergenic 45.0%
! GTTTGGAGGTACGTTGTAGT+CGG - chr1_3:69277322-69277341 Msa0137010:CDS 45.0%
AACTTGAGTGAGAGGATCTG+TGG + chr1_3:69277380-69277399 None:intergenic 45.0%
GCTAGAAGAACTTGAGTGAG+AGG + chr1_3:69277388-69277407 None:intergenic 45.0%
! CATGGATGGTCAAACTTGCT+GGG - chr1_3:69277440-69277459 Msa0137010:CDS 45.0%
AGGAAGAGTAATGCTCTGGT+AGG + chr1_3:69277558-69277577 None:intergenic 45.0%
! TAGGGGTTGTTGAGTGGGTT+CGG + chr1_3:69274635-69274654 None:intergenic 50.0%
CCGAATAGGGGTTGTTGAGT+GGG + chr1_3:69274640-69274659 None:intergenic 50.0%
CCCACTCAACAACCCCTATT+CGG - chr1_3:69274637-69274656 Msa0137010:CDS 50.0%
CCACTCAACAACCCCTATTC+GGG - chr1_3:69274638-69274657 Msa0137010:CDS 50.0%
TCCGCCATTGAAGAAAGACC+CGG - chr1_3:69274786-69274805 Msa0137010:CDS 50.0%
ACCGGGTCTTTCTTCAATGG+CGG + chr1_3:69274790-69274809 None:intergenic 50.0%
CTGACACCCTCTGATTGAAC+AGG + chr1_3:69275633-69275652 None:intergenic 50.0%
CACAACTCACTAGGTAGGGA+AGG + chr1_3:69275744-69275763 None:intergenic 50.0%
CAGTACAGGCTTGTCTTTCC+AGG - chr1_3:69276515-69276534 Msa0137010:CDS 50.0%
TCATTGGGTCAATGGTCGTG+TGG + chr1_3:69276624-69276643 None:intergenic 50.0%
GCTACGAATTGACCTGATGC+AGG + chr1_3:69276704-69276723 None:intergenic 50.0%
! CGATCATCTGGATTGGGACA+TGG - chr1_3:69276839-69276858 Msa0137010:intron 50.0%
!!! CCCTTGAGAGCTGGCTTTTA+AGG - chr1_3:69277018-69277037 Msa0137010:intron 50.0%
CCCTTAAAAGCCAGCTCTCA+AGG + chr1_3:69277022-69277041 None:intergenic 50.0%
GAGACCGGATGCTATCAGTT+TGG - chr1_3:69277305-69277324 Msa0137010:CDS 50.0%
ACCGGATGCTATCAGTTTGG+AGG - chr1_3:69277308-69277327 Msa0137010:CDS 50.0%
TGAGTGAGAGGATCTGTGGA+TGG + chr1_3:69277376-69277395 None:intergenic 50.0%
GTCTTTACCTAGGTGGTGCA+TGG - chr1_3:69277422-69277441 Msa0137010:CDS 50.0%
TTACCTAGGTGGTGCATGGA+TGG - chr1_3:69277426-69277445 Msa0137010:CDS 50.0%
GCATGGATGGTCAAACTTGC+TGG - chr1_3:69277439-69277458 Msa0137010:CDS 50.0%
TCCTAAATTCCACCAGGCCT+TGG - chr1_3:69277623-69277642 Msa0137010:five_prime_UTR 50.0%
CCCGAATAGGGGTTGTTGAG+TGG + chr1_3:69274641-69274660 None:intergenic 55.0%
AGGGAAGCTGACCCGAATAG+GGG + chr1_3:69274652-69274671 None:intergenic 55.0%
GAGGGAAGCTGACCCGAATA+GGG + chr1_3:69274653-69274672 None:intergenic 55.0%
AGAGGGAAGCTGACCCGAAT+AGG + chr1_3:69274654-69274673 None:intergenic 55.0%
TTGTTGTGGTCTCGTGGTGC+AGG - chr1_3:69276224-69276243 Msa0137010:intron 55.0%
TGCGGGTACCAGAACCAAGT+AGG + chr1_3:69276403-69276422 None:intergenic 55.0%
GGTTCTTCTCCCTTGAGAGC+TGG - chr1_3:69277009-69277028 Msa0137010:intron 55.0%
CGTTGTAGTCGGAGCAGTAG+TGG - chr1_3:69277333-69277352 Msa0137010:CDS 55.0%
TGACCATCCATGCACCACCT+AGG + chr1_3:69277432-69277451 None:intergenic 55.0%
GCCAAGGCCTGGTGGAATTT+AGG + chr1_3:69277627-69277646 None:intergenic 55.0%
GGAGCAACCCGAACTGAGGA+AGG + chr1_3:69274614-69274633 None:intergenic 60.0%
GTTCGGAGCAACCCGAACTG+AGG + chr1_3:69274618-69274637 None:intergenic 60.0%
GGTCTCGTGGTGCAGGTTTC+TGG - chr1_3:69276231-69276250 Msa0137010:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 69274434 69277652 69274434 ID=Msa0137010;Name=Msa0137010
chr1_3 mRNA 69274434 69277652 69274434 ID=Msa0137010-mRNA-1;Parent=Msa0137010;Name=Msa0137010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|4|184|340
chr1_3 exon 69274434 69274827 69274434 ID=Msa0137010-mRNA-1:exon:23950;Parent=Msa0137010-mRNA-1
chr1_3 exon 69275550 69275840 69275550 ID=Msa0137010-mRNA-1:exon:23949;Parent=Msa0137010-mRNA-1
chr1_3 exon 69276388 69276677 69276388 ID=Msa0137010-mRNA-1:exon:23948;Parent=Msa0137010-mRNA-1
chr1_3 exon 69277279 69277652 69277279 ID=Msa0137010-mRNA-1:exon:23947;Parent=Msa0137010-mRNA-1
chr1_3 five_prime_UTR 69277511 69277652 69277511 ID=Msa0137010-mRNA-1:five_prime_utr;Parent=Msa0137010-mRNA-1
chr1_3 CDS 69277279 69277510 69277279 ID=Msa0137010-mRNA-1:cds;Parent=Msa0137010-mRNA-1
chr1_3 CDS 69276388 69276677 69276388 ID=Msa0137010-mRNA-1:cds;Parent=Msa0137010-mRNA-1
chr1_3 CDS 69275550 69275840 69275550 ID=Msa0137010-mRNA-1:cds;Parent=Msa0137010-mRNA-1
chr1_3 CDS 69274618 69274827 69274618 ID=Msa0137010-mRNA-1:cds;Parent=Msa0137010-mRNA-1
chr1_3 three_prime_UTR 69274434 69274617 69274434 ID=Msa0137010-mRNA-1:three_prime_utr;Parent=Msa0137010-mRNA-1
Gene Sequence

>Msa0137010

ATGGGATTGGGAACCACCACTGTTCCTATGAATATCCTTCCTCAGTTCGGGTTGCTCCGAACCCACTCAACAACCCCTATTCGGGTCAGCTTCCCTCTCTGTCGAAGAAGAAATAATAAGAGTTTTGGTAAATTCGTTTGTTTCGCCGTTGATGATGAACTCAGACAGAACCAACAACAACAGCTTAGTACTACTTCAACTAGGCTTGGTTCCGCCATTGAAGAAAGACCCGGTGAAGAAACATTGGAAAATTTTAAGGAAGATGGAGAAAGAAGTGCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCTGATGATAAAGAAATGAGCATATTTGATCACCTTGAAGAGCTTCGACAAAGAATCTTTATATCAGTTCTAGGAGTTGGAGGAAGCATTTTGGGATGCTTTGCATTTTCAAAAGATTTGGTGAGGCTTCTTGAAGCTCCTGTTCAATCAGAGGGTGTCAGATTTCTTCAGTTAGCTCCTGGTGAATTTTTCTTCACCACTTTAAAGGTTTCTGGATATTGTGGCCTTCTCTTGGGAAGTCCTATCATTCTCTATGAAATCATAGCCTTTATAATTCCAGGTCTAACGAAAGCTGAAAGAAGGTTTTTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTACGCCGGAATAACCTTCTCCTACTTGGTTCTGGTACCCGCAGCATTAAATTTCTTTGTCAATTATGCTGAAGGTGCTGTTGAATCACTGTGGTCCATTGATCAATACTTTGAGTTTGTTCTGGTTCTTATGTTCAGTACAGGCTTGTCTTTCCAGGTACCGATTATACAACTTCTATTGGGACAACTTGGATTGGTTACTGGAGACCGGATGCTATCAGTTTGGAGGTACGTTGTAGTCGGAGCAGTAGTGGCAGCTGCTATAGTTACGCCATCCACAGATCCTCTCACTCAAGTTCTTCTAGCAGCACCATTATTAGGTCTTTACCTAGGTGGTGCATGGATGGTCAAACTTGCTGGGCGTTAA

Protein sequence

>Msa0137010

MGLGTTTVPMNILPQFGLLRTHSTTPIRVSFPLCRRRNNKSFGKFVCFAVDDELRQNQQQQLSTTSTRLGSAIEERPGEETLENFKEDGERSAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFISVLGVGGSILGCFAFSKDLVRLLEAPVQSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPIILYEIIAFIIPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVTGDRMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR*