AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041060 MtrunA17_Chr7g0269991 96.211 475 13 1 1 475 1 470 0.0 952
Msa1041060 MtrunA17_Chr4g0071391 50.440 341 162 3 139 472 106 446 1.51e-127 378
Msa1041060 MtrunA17_Chr7g0258851 44.548 431 211 7 66 475 167 590 1.84e-126 380
Msa1041060 MtrunA17_Chr1g0175671 45.498 422 197 7 78 472 94 509 1.59e-124 373
Msa1041060 MtrunA17_Chr1g0213281 48.830 342 163 4 142 472 175 515 7.06e-124 371
Msa1041060 MtrunA17_Chr8g0368461 45.823 395 186 5 106 472 134 528 1.25e-123 371
Msa1041060 MtrunA17_Chr4g0068111 48.256 344 161 5 139 469 111 450 3.03e-118 354
Msa1041060 MtrunA17_Chr5g0413271 46.045 354 176 3 127 472 130 476 4.55e-118 355
Msa1041060 MtrunA17_Chr7g0259711 48.696 345 166 3 142 475 91 435 4.45e-110 333
Msa1041060 MtrunA17_Chr2g0287901 47.353 340 165 4 142 469 97 434 8.89e-107 325
Msa1041060 MtrunA17_Chr3g0126021 43.235 340 181 5 142 475 129 462 3.68e-99 305
Msa1041060 MtrunA17_Chr8g0384151 40.059 337 194 3 138 472 86 416 1.94e-88 277
Msa1041060 MtrunA17_Chr1g0210771 37.389 337 188 5 140 468 57 378 2.98e-86 270
Msa1041060 MtrunA17_Chr5g0430371 38.244 353 185 8 142 472 58 399 3.49e-86 270
Msa1041060 MtrunA17_Chr1g0171171 38.279 337 184 7 140 468 51 371 6.69e-86 268
Msa1041060 MtrunA17_Chr3g0105301 38.596 342 185 8 142 469 43 373 8.13e-85 266
Msa1041060 MtrunA17_Chr3g0097891 40.000 335 182 8 142 472 31 350 1.99e-82 258
Msa1041060 MtrunA17_Chr2g0314801 41.791 335 175 9 140 469 31 350 5.38e-82 257
Msa1041060 MtrunA17_Chr4g0006991 38.462 351 191 9 140 472 84 427 2.32e-81 258
Msa1041060 MtrunA17_Chr5g0413851 38.872 337 185 8 140 472 40 359 3.61e-81 256
Msa1041060 MtrunA17_Chr2g0325481 39.053 338 182 8 136 468 44 362 7.46e-81 255
Msa1041060 MtrunA17_Chr2g0283581 38.279 337 190 7 138 472 38 358 3.13e-80 253
Msa1041060 MtrunA17_Chr3g0085071 38.024 334 186 9 140 469 44 360 1.01e-79 252
Msa1041060 MtrunA17_Chr4g0041011 35.121 373 206 9 108 472 19 363 2.23e-79 251
Msa1041060 MtrunA17_Chr1g0178081 38.776 343 148 7 139 472 52 341 2.08e-78 248
Msa1041060 MtrunA17_Chr3g0085081 35.503 338 199 6 140 474 29 350 5.11e-78 247
Msa1041060 MtrunA17_Chr3g0091031 34.911 338 201 6 140 474 29 350 1.99e-77 246
Msa1041060 MtrunA17_Chr4g0005491 34.063 411 242 9 88 475 6 410 5.48e-77 246
Msa1041060 MtrunA17_Chr2g0314791 37.681 345 181 10 138 472 25 345 1.60e-76 243
Msa1041060 MtrunA17_Chr4g0045951 36.418 335 196 6 136 468 39 358 2.36e-76 243
Msa1041060 MtrunA17_Chr7g0243301 37.465 355 197 8 141 475 63 412 6.07e-76 244
Msa1041060 MtrunA17_Chr4g0045941 37.082 329 190 6 142 468 33 346 1.35e-74 238
Msa1041060 MtrunA17_Chr5g0437291 37.989 358 188 11 140 472 163 511 7.20e-74 241
Msa1041060 MtrunA17_Chr3g0113671 36.620 355 188 10 140 469 104 446 1.80e-71 233
Msa1041060 MtrunA17_Chr8g0360521 34.626 361 194 10 137 472 66 409 8.99e-71 230
Msa1041060 MtrunA17_Chr4g0005481 36.901 355 188 8 140 472 106 446 1.53e-69 228
Msa1041060 MtrunA17_Chr3g0114101 37.079 356 185 10 142 472 89 430 5.82e-69 226
Msa1041060 MtrunA17_Chr5g0437601 36.212 359 198 9 135 472 76 424 6.92e-69 226
Msa1041060 MtrunA17_Chr7g0242701 36.182 351 199 9 140 472 84 427 6.61e-68 223
Msa1041060 MtrunA17_Chr6g0476041 28.958 518 294 19 6 469 14 511 1.03e-55 194
Msa1041060 MtrunA17_Chr1g0209921 38.333 240 131 7 139 375 41 266 2.29e-50 172
Msa1041060 MtrunA17_Chr1g0188191 31.436 369 188 14 142 469 234 578 6.68e-50 179
Msa1041060 MtrunA17_Chr6g0455901 31.492 362 205 12 142 474 71 418 2.52e-49 174
Msa1041060 MtrunA17_Chr4g0049421 30.312 353 208 10 142 468 48 388 8.73e-48 169
Msa1041060 MtrunA17_Chr4g0070341 30.532 357 209 10 140 472 130 471 9.68e-47 168
Msa1041060 MtrunA17_Chr6g0456691 32.507 363 200 11 139 473 75 420 8.08e-46 165
Msa1041060 MtrunA17_Chr8g0347321 28.700 446 245 15 58 474 40 441 6.69e-45 162
Msa1041060 MtrunA17_Chr2g0283851 31.492 362 216 11 135 472 47 400 9.61e-45 161
Msa1041060 MtrunA17_Chr6g0456681 31.956 363 203 11 140 473 62 409 5.83e-44 159
Msa1041060 MtrunA17_Chr8g0384421 29.830 352 218 10 140 472 131 472 6.86e-44 160
Msa1041060 MtrunA17_Chr8g0391481 30.133 375 215 13 131 474 16 374 7.02e-44 158
Msa1041060 MtrunA17_Chr6g0451321 30.833 360 208 14 140 473 114 458 4.44e-43 158
Msa1041060 MtrunA17_Chr5g0414091 31.250 368 204 16 140 475 83 433 7.15e-42 154
Msa1041060 MtrunA17_Chr3g0140371 30.141 355 206 12 142 469 18 357 3.47e-41 150
Msa1041060 MtrunA17_Chr7g0226991 28.804 368 209 12 136 469 51 399 5.50e-41 151
Msa1041060 MtrunA17_Chr8g0387921 29.412 357 209 12 141 468 73 415 2.19e-40 150
Msa1041060 MtrunA17_Chr5g0414051 30.084 359 204 12 142 469 75 417 3.09e-40 150
Msa1041060 MtrunA17_Chr5g0414061 29.412 357 210 13 141 469 93 435 2.94e-39 147
Msa1041060 MtrunA17_Chr5g0414041 31.180 356 205 13 142 469 87 430 1.20e-36 140
Msa1041060 MtrunA17_Chr2g0287931 50.400 125 60 1 202 324 2 126 4.16e-36 130
Msa1041060 MtrunA17_Chr7g0221291 43.956 91 51 0 140 230 77 167 8.31e-24 97.8
Msa1041060 MtrunA17_Chr7g0221271 44.118 102 56 1 139 240 76 176 1.62e-23 98.2
Msa1041060 MtrunA17_Chr3g0085101 36.634 101 61 2 343 440 6 106 1.32e-19 84.3
Msa1041060 MtrunA17_Chr1g0209931 47.059 85 39 4 386 469 10 89 8.06e-19 81.6
Msa1041060 MtrunA17_Chr7g0221281 27.426 237 140 8 262 473 8 237 3.47e-16 78.6
Msa1041060 MtrunA17_Chr2g0287911 52.632 57 20 1 141 197 60 109 8.35e-16 73.2
Msa1041060 MtrunA17_Chr5g0414081 27.320 194 116 7 306 475 10 202 2.85e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041060 AT3G62390.1 58.125 480 184 7 1 472 1 471 0.0 577
Msa1041060 AT3G62390.2 57.179 390 153 6 1 385 1 381 2.61e-154 445
Msa1041060 AT3G12060.1 51.831 355 157 5 131 472 182 535 4.15e-131 391
Msa1041060 AT5G20590.1 41.929 477 257 9 11 472 8 479 1.17e-129 385
Msa1041060 AT5G06700.1 51.744 344 155 4 139 472 252 594 2.45e-128 385
Msa1041060 AT1G60790.1 51.304 345 156 5 140 472 188 532 5.01e-126 377
Msa1041060 AT5G49340.1 48.415 347 168 5 137 472 95 441 7.56e-119 356
Msa1041060 AT5G19160.1 49.713 348 150 5 142 469 99 441 2.33e-112 340
Msa1041060 AT3G06080.2 47.941 340 165 3 142 469 103 442 2.02e-110 335
Msa1041060 AT5G06230.2 43.553 349 182 6 138 472 17 364 1.40e-96 296
Msa1041060 AT5G06230.1 43.553 349 182 6 138 472 58 405 4.28e-96 296
Msa1041060 AT1G48880.1 41.543 337 181 5 141 472 114 439 2.33e-95 295
Msa1041060 AT3G11570.1 45.511 323 167 5 158 472 98 419 1.69e-94 293
Msa1041060 AT5G20590.2 39.362 376 214 7 11 377 8 378 3.01e-88 275
Msa1041060 AT5G19160.2 53.782 238 108 1 142 377 99 336 1.27e-87 272
Msa1041060 AT1G29050.1 40.240 333 182 5 142 472 61 378 1.40e-87 273
Msa1041060 AT2G34070.1 37.772 368 200 8 111 472 39 383 2.13e-84 265
Msa1041060 AT3G06080.1 52.101 238 112 1 142 377 103 340 8.32e-84 262
Msa1041060 AT2G30010.1 39.205 352 182 7 142 472 56 396 1.19e-82 261
Msa1041060 AT2G30010.2 39.205 352 182 7 142 472 99 439 1.96e-82 262
Msa1041060 AT1G78710.1 38.109 349 198 8 127 472 23 356 3.46e-82 258
Msa1041060 AT3G54260.1 37.870 338 181 7 142 468 51 370 3.49e-82 259
Msa1041060 AT2G30900.1 38.462 338 190 8 140 472 41 365 2.39e-81 256
Msa1041060 AT2G42570.1 37.651 332 189 7 141 470 46 361 1.44e-80 254
Msa1041060 AT5G58600.1 37.283 346 185 9 142 469 66 397 6.65e-80 254
Msa1041060 AT2G31110.2 34.301 379 223 8 96 472 8 362 9.80e-79 250
Msa1041060 AT2G40150.1 38.292 363 187 11 141 475 70 423 7.76e-78 249
Msa1041060 AT1G73140.1 36.104 385 204 12 116 472 35 405 7.48e-77 246
Msa1041060 AT2G40160.2 36.490 359 194 9 142 475 77 426 2.88e-76 246
Msa1041060 AT2G40160.1 36.236 356 193 9 142 472 77 423 4.10e-76 245
Msa1041060 AT3G14850.2 38.279 337 186 8 142 472 34 354 8.71e-76 242
Msa1041060 AT2G38320.1 36.592 358 192 11 140 472 57 404 3.11e-74 239
Msa1041060 AT5G01360.2 35.127 353 201 9 140 472 34 378 2.51e-73 236
Msa1041060 AT3G55990.1 37.057 367 194 10 134 475 132 486 3.24e-73 239
Msa1041060 AT5G01360.1 35.127 353 201 9 140 472 90 434 6.63e-73 237
Msa1041060 AT5G01620.2 35.655 359 200 9 134 472 102 449 1.33e-69 229
Msa1041060 AT5G01620.1 35.655 359 200 9 134 472 102 449 1.33e-69 229
Msa1041060 AT5G01620.3 35.655 359 200 9 134 472 110 457 2.24e-69 228
Msa1041060 AT5G06230.3 43.426 251 134 2 138 380 58 308 1.50e-67 219
Msa1041060 AT3G11030.1 34.903 361 201 9 135 472 99 448 4.66e-67 222
Msa1041060 AT2G40320.1 34.501 371 211 10 122 472 64 422 4.76e-65 216
Msa1041060 AT2G38320.2 35.650 331 179 10 166 472 1 321 2.87e-63 208
Msa1041060 AT1G78710.2 33.046 348 164 9 127 472 16 296 3.39e-59 197
Msa1041060 AT5G58600.2 38.723 235 132 5 142 375 66 289 2.04e-56 189
Msa1041060 AT2G34070.2 36.704 267 145 7 212 472 1 249 1.66e-54 183
Msa1041060 AT2G30900.2 38.889 234 131 5 140 372 41 263 6.14e-54 182
Msa1041060 AT5G64470.3 33.621 348 198 14 142 468 55 390 4.25e-52 181
Msa1041060 AT2G31110.3 33.091 275 163 5 96 370 8 261 8.72e-52 176
Msa1041060 AT5G51640.1 30.390 385 208 12 125 469 121 485 1.21e-51 182
Msa1041060 AT5G64470.2 33.428 353 198 15 142 468 55 396 2.28e-51 179
Msa1041060 AT4G25360.1 31.733 375 197 15 134 469 167 521 4.07e-51 182
Msa1041060 AT4G25360.2 31.733 375 197 15 134 469 167 521 4.07e-51 182
Msa1041060 AT2G40160.3 35.918 245 139 6 142 377 77 312 4.52e-51 176
Msa1041060 AT1G01430.1 33.067 375 205 15 133 475 90 450 4.46e-49 174
Msa1041060 AT3G14850.1 36.704 267 147 8 212 472 1 251 6.98e-49 168
Msa1041060 AT1G70230.1 33.144 353 196 13 142 473 79 412 1.35e-48 172
Msa1041060 AT2G14530.1 29.275 386 227 15 114 468 32 402 1.90e-48 172
Msa1041060 AT5G20680.6 30.115 435 256 16 57 469 46 454 8.96e-47 168
Msa1041060 AT5G20680.4 30.115 435 256 16 57 469 140 548 1.69e-46 169
Msa1041060 AT5G20680.1 30.115 435 256 16 57 469 140 548 1.69e-46 169
Msa1041060 AT5G20680.3 30.115 435 256 16 57 469 140 548 1.69e-46 169
Msa1041060 AT5G20680.5 30.115 435 256 16 57 469 140 548 1.69e-46 169
Msa1041060 AT5G20680.2 30.115 435 256 16 57 469 122 530 1.86e-46 169
Msa1041060 AT3G28150.1 31.356 354 209 10 137 468 65 406 5.33e-46 165
Msa1041060 AT4G23790.1 32.275 378 214 14 120 469 61 424 1.08e-45 165
Msa1041060 AT3G02440.1 30.447 358 212 9 142 475 127 471 7.04e-45 164
Msa1041060 AT3G02440.2 30.447 358 212 9 142 475 135 479 7.32e-45 164
Msa1041060 AT5G15890.1 29.128 436 259 16 59 469 109 519 2.75e-44 163
Msa1041060 AT4G01080.1 31.006 358 210 11 141 475 90 433 3.90e-44 161
Msa1041060 AT5G64020.1 28.852 357 223 11 142 472 57 408 6.07e-44 159
Msa1041060 AT2G31110.1 35.514 214 128 5 261 472 9 214 4.26e-42 149
Msa1041060 AT4G11090.1 29.750 400 237 14 98 469 39 422 6.74e-42 154
Msa1041060 AT5G15900.1 30.141 355 214 11 142 473 67 410 1.23e-39 148
Msa1041060 AT5G15900.2 30.141 355 214 11 142 473 86 429 1.52e-39 148
Msa1041060 AT2G37720.1 30.447 358 210 13 139 472 140 482 2.45e-36 140
Msa1041060 AT5G64470.4 31.852 270 159 12 142 397 55 313 1.22e-33 129
Msa1041060 AT5G64470.1 31.852 270 159 12 142 397 55 313 1.50e-33 129

Find 102 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGGATAAATGGTATTTA+AGG 0.130435 7_1:+78579295 None:intergenic
GAACTATAGTTTCAGGTTTC+TGG 0.139405 7_1:-78580958 Msa1041060:intron
TTCCCATTGGTTCCTATTAA+TGG 0.150183 7_1:+78581067 None:intergenic
TCCTTTCATCTTTCACTATC+TGG 0.168937 7_1:-78582274 Msa1041060:CDS
CCTTGGAAGGTCACAATCTT+TGG 0.179023 7_1:+78581788 None:intergenic
TAACTAGTTTGTCAGAATTT+AGG 0.182487 7_1:-78579211 Msa1041060:CDS
TATATTCTTCTCAGGATAAA+TGG 0.237473 7_1:+78579286 None:intergenic
GTTCAGCACCATCTCATTTC+AGG 0.238683 7_1:-78579680 Msa1041060:intron
GATGGTCACCCATCCATTTA+TGG 0.238705 7_1:-78579185 Msa1041060:CDS
AGAAGCCAAAAGAATGTTTC+AGG 0.248012 7_1:-78582119 Msa1041060:CDS
ATGGAGAGGAGCTGATATTT+TGG 0.261754 7_1:-78580719 Msa1041060:CDS
TCAAAACCTTCATCTATAAA+AGG 0.284074 7_1:+78581864 None:intergenic
AGAGAGGGAACTATAGTTTC+AGG 0.285584 7_1:-78580965 Msa1041060:CDS
TGTAGTCATTGGTGTCTTCC+AGG 0.301304 7_1:-78579131 Msa1041060:CDS
CAAGAATCTCTAGCATAAAT+AGG 0.310027 7_1:+78581888 None:intergenic
TTGTGGGTGATTCCATTAAT+AGG 0.313259 7_1:-78581079 Msa1041060:CDS
TGGAGTTTATAAGAGGAAAA+AGG 0.315433 7_1:-78581109 Msa1041060:CDS
TGGATCCTGAAACATTCTTT+TGG 0.320732 7_1:+78582114 None:intergenic
ACTATAGTTCCCTCTCTCTT+TGG 0.323759 7_1:+78580971 None:intergenic
GTCAATGAATGAACAGTTAA+AGG 0.328689 7_1:+78582197 None:intergenic
GATTTCTATAGCTTCAGATT+TGG 0.333412 7_1:+78582094 None:intergenic
TCTGCAACAGGGGAGGTAAT+TGG 0.336289 7_1:-78579364 Msa1041060:intron
GTGATTTAACAAAAGGGTAT+TGG 0.340659 7_1:-78581929 Msa1041060:CDS
GTTCATGCACGATTTGATAA+TGG 0.348937 7_1:+78582452 None:intergenic
CTTGGAAGGTCACAATCTTT+GGG 0.364337 7_1:+78581789 None:intergenic
CTGAACTTCGAAAGAAAACT+TGG 0.373534 7_1:+78579697 None:intergenic
CTATGATGACTTGGGCTTCA+TGG 0.375370 7_1:-78579749 Msa1041060:CDS
AAAGAGTGTGATTTAACAAA+AGG 0.376080 7_1:-78581936 Msa1041060:CDS
CGTGCCTCATACACTCTCTT+TGG 0.387282 7_1:+78581008 None:intergenic
TTGTCAGAATTTAGGATAGA+TGG 0.389050 7_1:-78579203 Msa1041060:CDS
AACAACTCATTCCATACATC+TGG 0.402637 7_1:+78579104 None:intergenic
CAGTTACAGAAATAATGAAT+AGG 0.405331 7_1:+78579034 None:intergenic
TGAAGGTGTAGTGGTGGATT+TGG 0.409005 7_1:+78582247 None:intergenic
AGATTTACAGAGACAGTGTT+TGG 0.414712 7_1:+78582224 None:intergenic
GTATTTAAGGTTTCATTAAG+AGG 0.418975 7_1:+78579308 None:intergenic
CGAATTGATGCGATTGATCA+TGG 0.420809 7_1:-78580751 Msa1041060:CDS
ATGGTCACCCATCCATTTAT+GGG 0.421431 7_1:-78579184 Msa1041060:CDS
GAGAAGTGCTAACCCAGCTT+TGG 0.426335 7_1:+78580660 None:intergenic
GAATTCAAGATTGTAGTCAT+TGG 0.430062 7_1:-78579142 Msa1041060:CDS
AAAATGTTGGAGTTTATAAG+AGG 0.432567 7_1:-78581116 Msa1041060:CDS
TTGTGAGGGGAATGGAAGAT+TGG 0.439163 7_1:-78581841 Msa1041060:CDS
TCTATGATTATATTCTTCTC+AGG 0.450722 7_1:+78579278 None:intergenic
TTCCAGGGGTTCCAGATGTA+TGG 0.454598 7_1:-78579115 Msa1041060:CDS
ATCGCATCAATTCGCAAAGT+TGG 0.456158 7_1:+78580760 None:intergenic
GAAAGATGAAAGGAAGAAGA+TGG 0.459359 7_1:+78582283 None:intergenic
AGGGGAGGTAATTGGAATTC+AGG 0.464877 7_1:-78579356 Msa1041060:CDS
AGTTACAGAAATAATGAATA+GGG 0.465288 7_1:+78579035 None:intergenic
GTAGTCATTGGTGTCTTCCA+GGG 0.468368 7_1:-78579130 Msa1041060:CDS
TGTAAAGAGTAAAAGTCTAG+TGG 0.470076 7_1:+78582322 None:intergenic
TTCCATACATCTGGAACCCC+TGG 0.474632 7_1:+78579113 None:intergenic
AGGAAAATTACCAAAGAGAG+AGG 0.476594 7_1:-78580981 Msa1041060:CDS
TTTCGAAAGCTATGATGACT+TGG 0.480355 7_1:-78579758 Msa1041060:CDS
TATGATGACTTGGGCTTCAT+GGG 0.480835 7_1:-78579748 Msa1041060:CDS
AGCTGTAGAAACATTTAGCC+GGG 0.486758 7_1:+78579782 None:intergenic
AGACGGTTATCTATTAAAGA+TGG 0.489310 7_1:+78582146 None:intergenic
TCACATCACAAAACCAAAGC+TGG 0.490317 7_1:-78580673 Msa1041060:CDS
TTGATCATGGTTCGTCAAGA+TGG 0.494455 7_1:-78580738 Msa1041060:CDS
TTCGAAAGCTATGATGACTT+GGG 0.498467 7_1:-78579757 Msa1041060:CDS
AAGAGTGTGATTTAACAAAA+GGG 0.500174 7_1:-78581935 Msa1041060:CDS
GATTTGATAATGGAAGAATA+AGG 0.500781 7_1:+78582462 None:intergenic
GTTTGCTACAAACAAGTCAA+TGG 0.501800 7_1:+78582398 None:intergenic
ACTACAATCTTGAATTCTTG+AGG 0.506067 7_1:+78579148 None:intergenic
ATTCCATTAATAGGAACCAA+TGG 0.514445 7_1:-78581070 Msa1041060:CDS
TGCACAACATTGATTCCCAT+TGG 0.516029 7_1:+78581054 None:intergenic
CCAAAGATTGTGACCTTCCA+AGG 0.518341 7_1:-78581788 Msa1041060:intron
TGGATAGAAACTTTACTAAG+TGG 0.522870 7_1:-78581821 Msa1041060:CDS
CATGAAAGCAAAGCAAGAGT+AGG 0.524542 7_1:-78580796 Msa1041060:CDS
AGGATTTATTACTATCAAGA+AGG 0.525446 7_1:-78579819 Msa1041060:CDS
AGATCCAAAGAGAGTGTATG+AGG 0.528363 7_1:-78581012 Msa1041060:CDS
AAGCTGTAGAAACATTTAGC+CGG 0.530807 7_1:+78579781 None:intergenic
TTCCATTAATAGGAACCAAT+GGG 0.535430 7_1:-78581069 Msa1041060:CDS
GCTATAGAAATCAACCATGT+TGG 0.538017 7_1:-78582083 Msa1041060:CDS
TTCACTTACAAAATAGATGA+GGG 0.543904 7_1:-78579076 Msa1041060:exon
ATGAAAGCAAAGCAAGAGTA+GGG 0.551438 7_1:-78580795 Msa1041060:CDS
TAGTCATTGGTGTCTTCCAG+GGG 0.555746 7_1:-78579129 Msa1041060:CDS
GAAACTTTACTAAGTGGAGA+TGG 0.558108 7_1:-78581815 Msa1041060:CDS
GTAAAGAGTAAAAGTCTAGT+GGG 0.561661 7_1:+78582323 None:intergenic
ACAGAGACAGTGTTTGGTGA+AGG 0.563414 7_1:+78582230 None:intergenic
GGTTTCATTAAGAGGATGAG+TGG 0.565715 7_1:+78579316 None:intergenic
TTTCACTTACAAAATAGATG+AGG 0.566771 7_1:-78579077 Msa1041060:exon
GTTTGGTGAAGGTGTAGTGG+TGG 0.573024 7_1:+78582241 None:intergenic
GTTATATTCAACCATGTCAC+GGG 0.574652 7_1:+78579230 None:intergenic
GAAGAATAAGGAAGTTGCAG+AGG 0.577578 7_1:+78582474 None:intergenic
GAAACAAACCTGAAATGAGA+TGG 0.579203 7_1:+78579672 None:intergenic
GCCAGATAGTGAAAGATGAA+AGG 0.582837 7_1:+78582273 None:intergenic
CACATCACAAAACCAAAGCT+GGG 0.583781 7_1:-78580672 Msa1041060:intron
AAGGAACTCTAGTTCATCCC+CGG 0.588297 7_1:-78579800 Msa1041060:CDS
CACTTGAAGTAGCACCAACA+TGG 0.588608 7_1:+78582069 None:intergenic
AGTGTTTGGTGAAGGTGTAG+TGG 0.589726 7_1:+78582238 None:intergenic
TGAACTTCGAAAGAAAACTT+GGG 0.590332 7_1:+78579698 None:intergenic
GATGACTTGGGCTTCATGGG+TGG 0.595229 7_1:-78579745 Msa1041060:CDS
TTGAGAGAGACTACCTTGGA+AGG 0.601243 7_1:+78581775 None:intergenic
GAGTGTATGAGGCACGTGGA+AGG 0.601700 7_1:-78581001 Msa1041060:CDS
AGATGAAAACTCCCGTGACA+TGG 0.604222 7_1:-78579241 Msa1041060:CDS
AGTTATATTCAACCATGTCA+CGG 0.606976 7_1:+78579229 None:intergenic
CATGGTTCGTCAAGATGGAG+AGG 0.632218 7_1:-78580733 Msa1041060:CDS
GGAAAATTACCAAAGAGAGA+GGG 0.638676 7_1:-78580980 Msa1041060:CDS
AATGCATGGTAATAGAACAA+AGG 0.639849 7_1:-78582033 Msa1041060:CDS
GCTGTAGAAACATTTAGCCG+GGG 0.684407 7_1:+78579783 None:intergenic
AAGAGAGTGTATGAGGCACG+TGG 0.685399 7_1:-78581005 Msa1041060:CDS
GGAGGTAATTGGAATTCAGG+AGG 0.688041 7_1:-78579353 Msa1041060:CDS
TTCAGGAGGACATTGTACAG+AGG 0.733974 7_1:-78579339 Msa1041060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAACAAATATCAAATATTTT+GGG + chr7_1:78580583-78580602 None:intergenic 15.0%
!!! AGAACAAATATCAAATATTT+TGG + chr7_1:78580584-78580603 None:intergenic 15.0%
!!! ATTTTAAGTATTCAACTTTA+GGG + chr7_1:78581076-78581095 None:intergenic 15.0%
!! TTTGTCAATTTATCAAATTT+AGG - chr7_1:78581225-78581244 Msa1041060:intron 15.0%
!! TTGTCAATTTATCAAATTTA+GGG - chr7_1:78581226-78581245 Msa1041060:intron 15.0%
!!! AAAGGTATTATTCTATATAT+TGG - chr7_1:78581333-78581352 Msa1041060:intron 15.0%
!!! AAGGTATTATTCTATATATT+GGG - chr7_1:78581334-78581353 Msa1041060:intron 15.0%
!!! TGAAGTTTTGATTTTTAAGA+AGG - chr7_1:78579482-78579501 Msa1041060:intron 20.0%
!!! CAAAAGACATACAATTATTT+TGG - chr7_1:78580050-78580069 Msa1041060:intron 20.0%
!! ATTATTGACAAGACATAATT+AGG - chr7_1:78580152-78580171 Msa1041060:intron 20.0%
!! TTATTGACAAGACATAATTA+GGG - chr7_1:78580153-78580172 Msa1041060:intron 20.0%
!!! GCAAAGTTAATTTTATTCTT+TGG - chr7_1:78580289-78580308 Msa1041060:intron 20.0%
!! TAATTATTCAGAACTTTACT+TGG - chr7_1:78580526-78580545 Msa1041060:intron 20.0%
!! AATGTATAATTGTATATGAC+TGG - chr7_1:78580556-78580575 Msa1041060:intron 20.0%
!!! TTAAAATACTAGAGCATTTA+AGG + chr7_1:78580876-78580895 None:intergenic 20.0%
!! CATCTATAAGAAATCATATT+AGG + chr7_1:78580955-78580974 None:intergenic 20.0%
!!! CATTTTAAGTATTCAACTTT+AGG + chr7_1:78581077-78581096 None:intergenic 20.0%
!! GTTGAATACTTAAAATGAAA+CGG - chr7_1:78581080-78581099 Msa1041060:CDS 20.0%
!! TTGAATACTTAAAATGAAAC+GGG - chr7_1:78581081-78581100 Msa1041060:CDS 20.0%
!!! ATGAAGTTTTAATCTAATAG+AGG - chr7_1:78581286-78581305 Msa1041060:intron 20.0%
!!! TGAAGTTTTAATCTAATAGA+GGG - chr7_1:78581287-78581306 Msa1041060:intron 20.0%
!! AGGTATTATTCTATATATTG+GGG - chr7_1:78581335-78581354 Msa1041060:intron 20.0%
!! ATAAATGTTAAACAAAAGCT+TGG + chr7_1:78581472-78581491 None:intergenic 20.0%
!!! CATGTTAGTTTTTTTTTAGT+AGG + chr7_1:78581610-78581629 None:intergenic 20.0%
!! TGAAAAAAGTTGTCTATATT+TGG - chr7_1:78582023-78582042 Msa1041060:CDS 20.0%
!! AGTTACAGAAATAATGAATA+GGG + chr7_1:78582429-78582448 None:intergenic 20.0%
!!! GATTTGATAATGGAAGAATA+AGG + chr7_1:78579002-78579021 None:intergenic 25.0%
!!! AGAGTTTTTTTGTAGCATTA+TGG + chr7_1:78579034-78579053 None:intergenic 25.0%
!!! CTTTCATTTTTCATCATCAA+TGG - chr7_1:78579089-78579108 Msa1041060:CDS 25.0%
!! TTTTTGTAGAGTGAAGTTTT+GGG + chr7_1:78579292-78579311 None:intergenic 25.0%
!!! TTTTTTGTAGAGTGAAGTTT+TGG + chr7_1:78579293-78579312 None:intergenic 25.0%
!! GTTAATTTTACTTCAATGCA+TGG - chr7_1:78579414-78579433 Msa1041060:intron 25.0%
!!! TTTGATTTTTAAGAAGGTTG+AGG - chr7_1:78579488-78579507 Msa1041060:intron 25.0%
!! AAAGAGTGTGATTTAACAAA+AGG - chr7_1:78579525-78579544 Msa1041060:intron 25.0%
!! AAGAGTGTGATTTAACAAAA+GGG - chr7_1:78579526-78579545 Msa1041060:intron 25.0%
! TCAAAACCTTCATCTATAAA+AGG + chr7_1:78579600-78579619 None:intergenic 25.0%
! ATAAGTTGTTAATCCAAACA+AGG + chr7_1:78579785-78579804 None:intergenic 25.0%
!!! TGTTTTAAGTTGTTTTCGTA+AGG - chr7_1:78579923-78579942 Msa1041060:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG + chr7_1:78579952-78579971 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + chr7_1:78579953-78579972 None:intergenic 25.0%
! CAAATAAGTCAATCCAAATA+AGG - chr7_1:78579988-78580007 Msa1041060:intron 25.0%
!! GTCTTTTGTCAATAATTTCA+TGG + chr7_1:78580038-78580057 None:intergenic 25.0%
! ATGTATTGTGTTAGTCAATT+TGG - chr7_1:78580121-78580140 Msa1041060:intron 25.0%
! CAAAATCATTGTTTACTCTT+AGG - chr7_1:78580238-78580257 Msa1041060:intron 25.0%
!!! GGATATTATTTTTCTGTCAT+AGG - chr7_1:78580310-78580329 Msa1041060:intron 25.0%
! AAAATGTTGGAGTTTATAAG+AGG - chr7_1:78580345-78580364 Msa1041060:intron 25.0%
!!! GTGTTGAACTTTATTTTAAG+AGG - chr7_1:78580984-78581003 Msa1041060:CDS 25.0%
!! CATTCATAAGTAGTTTTTCA+AGG + chr7_1:78581108-78581127 None:intergenic 25.0%
! TTAGACACATGTTATTCTAT+AGG + chr7_1:78581174-78581193 None:intergenic 25.0%
! ATTATTCTATATATTGGGGT+TGG - chr7_1:78581339-78581358 Msa1041060:intron 25.0%
! TTATTCTATATATTGGGGTT+GGG - chr7_1:78581340-78581359 Msa1041060:intron 25.0%
!!! GTTAATTTTGAAAAATGAGC+TGG - chr7_1:78581433-78581452 Msa1041060:intron 25.0%
! AGGATTTATTACTATCAAGA+AGG - chr7_1:78581642-78581661 Msa1041060:intron 25.0%
!! GTCAAAGCATTTCAAATAAA+TGG - chr7_1:78581909-78581928 Msa1041060:CDS 25.0%
!! GTATTTAAGGTTTCATTAAG+AGG + chr7_1:78582156-78582175 None:intergenic 25.0%
! TATATTCTTCTCAGGATAAA+TGG + chr7_1:78582178-78582197 None:intergenic 25.0%
! TCTATGATTATATTCTTCTC+AGG + chr7_1:78582186-78582205 None:intergenic 25.0%
!! TAACTAGTTTGTCAGAATTT+AGG - chr7_1:78582250-78582269 Msa1041060:CDS 25.0%
! TTTCACTTACAAAATAGATG+AGG - chr7_1:78582384-78582403 Msa1041060:five_prime_UTR 25.0%
! TTCACTTACAAAATAGATGA+GGG - chr7_1:78582385-78582404 Msa1041060:five_prime_UTR 25.0%
! CAGTTACAGAAATAATGAAT+AGG + chr7_1:78582430-78582449 None:intergenic 25.0%
GTAAAGAGTAAAAGTCTAGT+GGG + chr7_1:78579141-78579160 None:intergenic 30.0%
TGTAAAGAGTAAAAGTCTAG+TGG + chr7_1:78579142-78579161 None:intergenic 30.0%
GTCAATGAATGAACAGTTAA+AGG + chr7_1:78579267-78579286 None:intergenic 30.0%
AGACGGTTATCTATTAAAGA+TGG + chr7_1:78579318-78579337 None:intergenic 30.0%
GATTTCTATAGCTTCAGATT+TGG + chr7_1:78579370-78579389 None:intergenic 30.0%
AATGCATGGTAATAGAACAA+AGG - chr7_1:78579428-78579447 Msa1041060:intron 30.0%
! GTGATTTAACAAAAGGGTAT+TGG - chr7_1:78579532-78579551 Msa1041060:intron 30.0%
CAAGAATCTCTAGCATAAAT+AGG + chr7_1:78579576-78579595 None:intergenic 30.0%
! TCTTGTCCTTTTATAGATGA+AGG - chr7_1:78579591-78579610 Msa1041060:intron 30.0%
TGGATAGAAACTTTACTAAG+TGG - chr7_1:78579640-78579659 Msa1041060:intron 30.0%
TTGCAATTGTAGTTATGCTT+AGG - chr7_1:78579759-78579778 Msa1041060:CDS 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG - chr7_1:78579862-78579881 Msa1041060:intron 30.0%
CAACGAAATACATCCTTATT+TGG + chr7_1:78580004-78580023 None:intergenic 30.0%
CAAATAAGGATGTATTTCGT+TGG - chr7_1:78580002-78580021 Msa1041060:intron 30.0%
ATGTATTTCGTTGGTCAATT+TGG - chr7_1:78580011-78580030 Msa1041060:intron 30.0%
GTTCAATGCAACAAAAATGT+TGG - chr7_1:78580332-78580351 Msa1041060:intron 30.0%
TGGAGTTTATAAGAGGAAAA+AGG - chr7_1:78580352-78580371 Msa1041060:intron 30.0%
ATTCCATTAATAGGAACCAA+TGG - chr7_1:78580391-78580410 Msa1041060:intron 30.0%
TTCCATTAATAGGAACCAAT+GGG - chr7_1:78580392-78580411 Msa1041060:intron 30.0%
ACAAATCGACAAAAAGTTCA+CGG + chr7_1:78580849-78580868 None:intergenic 30.0%
TGTAGAGTTATGTTCAAGAA+AGG - chr7_1:78580919-78580938 Msa1041060:intron 30.0%
GTACTTGAAATTGTAAGTTG+CGG + chr7_1:78581202-78581221 None:intergenic 30.0%
!! TGATATTGTAAGGTGTTGTT+AGG + chr7_1:78581257-78581276 None:intergenic 30.0%
AACAACACCTTACAATATCA+AGG - chr7_1:78581257-78581276 Msa1041060:intron 30.0%
TTCTAGTCCTTGATATTGTA+AGG + chr7_1:78581267-78581286 None:intergenic 30.0%
TATTCTATATATTGGGGTTG+GGG - chr7_1:78581341-78581360 Msa1041060:intron 30.0%
AAAAAAAACCCAGAGAAAGT+TGG - chr7_1:78581396-78581415 Msa1041060:intron 30.0%
TAAACAAAAGCTTGGTACTT+AGG + chr7_1:78581464-78581483 None:intergenic 30.0%
TGAACTTCGAAAGAAAACTT+GGG + chr7_1:78581766-78581785 None:intergenic 30.0%
! ATAACAAAACCGTTGGATTT+TGG + chr7_1:78581844-78581863 None:intergenic 30.0%
!!! AAATCCAACGGTTTTGTTAT+TGG - chr7_1:78581844-78581863 Msa1041060:CDS 30.0%
TATTCCAATAACAAAACCGT+TGG + chr7_1:78581851-78581870 None:intergenic 30.0%
!!! TTTTTTGACAACAATCCAAG+TGG - chr7_1:78581887-78581906 Msa1041060:CDS 30.0%
! AGATGGTTAATGGATATATC+AGG + chr7_1:78581951-78581970 None:intergenic 30.0%
CTCAGGATAAATGGTATTTA+AGG + chr7_1:78582169-78582188 None:intergenic 30.0%
AGTTATATTCAACCATGTCA+CGG + chr7_1:78582235-78582254 None:intergenic 30.0%
! TTGTCAGAATTTAGGATAGA+TGG - chr7_1:78582258-78582277 Msa1041060:CDS 30.0%
! TTTTTCTCCCATAAATGGAT+GGG + chr7_1:78582287-78582306 None:intergenic 30.0%
! TTGTGTTTTTCTCCCATAAA+TGG + chr7_1:78582292-78582311 None:intergenic 30.0%
ACTACAATCTTGAATTCTTG+AGG + chr7_1:78582316-78582335 None:intergenic 30.0%
GAATTCAAGATTGTAGTCAT+TGG - chr7_1:78582319-78582338 Msa1041060:CDS 30.0%
! CATTCATTTTCATGAACTAG+TGG + chr7_1:78582473-78582492 None:intergenic 30.0%
GTTCATGCACGATTTGATAA+TGG + chr7_1:78579012-78579031 None:intergenic 35.0%
! GTTTGCTACAAACAAGTCAA+TGG + chr7_1:78579066-78579085 None:intergenic 35.0%
GAAAGATGAAAGGAAGAAGA+TGG + chr7_1:78579181-78579200 None:intergenic 35.0%
TCCTTTCATCTTTCACTATC+TGG - chr7_1:78579187-78579206 Msa1041060:CDS 35.0%
AGATTTACAGAGACAGTGTT+TGG + chr7_1:78579240-78579259 None:intergenic 35.0%
!!! TCTTTTGGCTTCTAGAAAGA+CGG + chr7_1:78579335-78579354 None:intergenic 35.0%
AGAAGCCAAAAGAATGTTTC+AGG - chr7_1:78579342-78579361 Msa1041060:CDS 35.0%
! TGGATCCTGAAACATTCTTT+TGG + chr7_1:78579350-78579369 None:intergenic 35.0%
GCTATAGAAATCAACCATGT+TGG - chr7_1:78579378-78579397 Msa1041060:intron 35.0%
!!! AGATGAAGGTTTTGATTGTG+AGG - chr7_1:78579605-78579624 Msa1041060:intron 35.0%
!!! GATGAAGGTTTTGATTGTGA+GGG - chr7_1:78579606-78579625 Msa1041060:intron 35.0%
!!! ATGAAGGTTTTGATTGTGAG+GGG - chr7_1:78579607-78579626 Msa1041060:intron 35.0%
GAAACTTTACTAAGTGGAGA+TGG - chr7_1:78579646-78579665 Msa1041060:intron 35.0%
ACATCCAAGAACTATAGTGA+CGG - chr7_1:78580195-78580214 Msa1041060:intron 35.0%
!!! AGGAAAAAGGCTAGTTTTTG+TGG - chr7_1:78580365-78580384 Msa1041060:intron 35.0%
!!! GGAAAAAGGCTAGTTTTTGT+GGG - chr7_1:78580366-78580385 Msa1041060:intron 35.0%
TTGTGGGTGATTCCATTAAT+AGG - chr7_1:78580382-78580401 Msa1041060:intron 35.0%
!! TTCCCATTGGTTCCTATTAA+TGG + chr7_1:78580397-78580416 None:intergenic 35.0%
AGGAAAATTACCAAAGAGAG+AGG - chr7_1:78580480-78580499 Msa1041060:intron 35.0%
GGAAAATTACCAAAGAGAGA+GGG - chr7_1:78580481-78580500 Msa1041060:intron 35.0%
!! GAACTATAGTTTCAGGTTTC+TGG - chr7_1:78580503-78580522 Msa1041060:intron 35.0%
TGTTCTTTCTGCAACTTTGT+AGG - chr7_1:78580598-78580617 Msa1041060:intron 35.0%
ATGAAAGCAAAGCAAGAGTA+GGG - chr7_1:78580666-78580685 Msa1041060:intron 35.0%
CTTTGTCTGCAAGATACTTA+AGG + chr7_1:78581313-78581332 None:intergenic 35.0%
AGTATCTTGCAGACAAAGAA+AGG - chr7_1:78581315-78581334 Msa1041060:intron 35.0%
ATCAAACTTCGTATTCCTGT+GGG + chr7_1:78581586-78581605 None:intergenic 35.0%
AATCAAACTTCGTATTCCTG+TGG + chr7_1:78581587-78581606 None:intergenic 35.0%
CTAACATGTGATCGTATAAC+AGG - chr7_1:78581622-78581641 Msa1041060:intron 35.0%
AAGCTGTAGAAACATTTAGC+CGG + chr7_1:78581683-78581702 None:intergenic 35.0%
TTTCGAAAGCTATGATGACT+TGG - chr7_1:78581703-78581722 Msa1041060:intron 35.0%
TTCGAAAGCTATGATGACTT+GGG - chr7_1:78581704-78581723 Msa1041060:intron 35.0%
CTGAACTTCGAAAGAAAACT+TGG + chr7_1:78581767-78581786 None:intergenic 35.0%
GAAACAAACCTGAAATGAGA+TGG + chr7_1:78581792-78581811 None:intergenic 35.0%
! ATCCACTCTGCAATAGTTTT+AGG - chr7_1:78581816-78581835 Msa1041060:CDS 35.0%
! TTTTAGGCTCCAAAATCCAA+CGG - chr7_1:78581832-78581851 Msa1041060:CDS 35.0%
! TTTGAAATGCTTTGACCACT+TGG + chr7_1:78581905-78581924 None:intergenic 35.0%
TCCATTAACCATCTACTGAA+CGG - chr7_1:78581957-78581976 Msa1041060:CDS 35.0%
GATTAATTCCGTTCAGTAGA+TGG + chr7_1:78581968-78581987 None:intergenic 35.0%
!!! TTTTTTCACGACAATCCAAG+TGG + chr7_1:78582011-78582030 None:intergenic 35.0%
! ATCAGAGTCGCTAACTATTT+TGG + chr7_1:78582073-78582092 None:intergenic 35.0%
GTTATATTCAACCATGTCAC+GGG + chr7_1:78582234-78582253 None:intergenic 35.0%
! GTTTTTCTCCCATAAATGGA+TGG + chr7_1:78582288-78582307 None:intergenic 35.0%
AACAACTCATTCCATACATC+TGG + chr7_1:78582360-78582379 None:intergenic 35.0%
GAAGAATAAGGAAGTTGCAG+AGG + chr7_1:78578990-78579009 None:intergenic 40.0%
GCCAGATAGTGAAAGATGAA+AGG + chr7_1:78579191-78579210 None:intergenic 40.0%
!!! TTGTAGAGTGAAGTTTTGGG+TGG + chr7_1:78579289-78579308 None:intergenic 40.0%
CTTGGAAGGTCACAATCTTT+GGG + chr7_1:78579675-78579694 None:intergenic 40.0%
GAATTTGAGAGAGACTACCT+TGG + chr7_1:78579693-78579712 None:intergenic 40.0%
!! AGTTATGCTTAGGCCTTGTT+TGG - chr7_1:78579769-78579788 Msa1041060:CDS 40.0%
GTTACCGTCACTATAGTTCT+TGG + chr7_1:78580202-78580221 None:intergenic 40.0%
GGAGTTGCAAAAGTGAAGTT+AGG - chr7_1:78580259-78580278 Msa1041060:intron 40.0%
!! TGCACAACATTGATTCCCAT+TGG + chr7_1:78580410-78580429 None:intergenic 40.0%
! AGATCCAAAGAGAGTGTATG+AGG - chr7_1:78580449-78580468 Msa1041060:intron 40.0%
ACTATAGTTCCCTCTCTCTT+TGG + chr7_1:78580493-78580512 None:intergenic 40.0%
AGAGAGGGAACTATAGTTTC+AGG - chr7_1:78580496-78580515 Msa1041060:intron 40.0%
CATGAAAGCAAAGCAAGAGT+AGG - chr7_1:78580665-78580684 Msa1041060:intron 40.0%
ATCGCATCAATTCGCAAAGT+TGG + chr7_1:78580704-78580723 None:intergenic 40.0%
CGAATTGATGCGATTGATCA+TGG - chr7_1:78580710-78580729 Msa1041060:CDS 40.0%
TTGATCATGGTTCGTCAAGA+TGG - chr7_1:78580723-78580742 Msa1041060:CDS 40.0%
! ATGGAGAGGAGCTGATATTT+TGG - chr7_1:78580742-78580761 Msa1041060:CDS 40.0%
! TGGTTTTCAACACAGCACAT+TGG - chr7_1:78580762-78580781 Msa1041060:CDS 40.0%
! TTTTCAACACAGCACATTGG+TGG - chr7_1:78580765-78580784 Msa1041060:CDS 40.0%
TCACATCACAAAACCAAAGC+TGG - chr7_1:78580788-78580807 Msa1041060:CDS 40.0%
CACATCACAAAACCAAAGCT+GGG - chr7_1:78580789-78580808 Msa1041060:CDS 40.0%
! GCATTTGAGGTTAAGACTTG+AGG + chr7_1:78581011-78581030 None:intergenic 40.0%
TGCTACCATAAAGCAACTTC+TGG + chr7_1:78581037-78581056 None:intergenic 40.0%
TACTCTTCTCAACTAGCATG+TGG - chr7_1:78581510-78581529 Msa1041060:intron 40.0%
AGCTGTAGAAACATTTAGCC+GGG + chr7_1:78581682-78581701 None:intergenic 40.0%
! TATGATGACTTGGGCTTCAT+GGG - chr7_1:78581713-78581732 Msa1041060:intron 40.0%
AGCCTAAAACTATTGCAGAG+TGG + chr7_1:78581821-78581840 None:intergenic 40.0%
TCCGTTCAGTAGATGGTTAA+TGG + chr7_1:78581961-78581980 None:intergenic 40.0%
CTTAAACCACGTTAACCACT+TGG - chr7_1:78581993-78582012 Msa1041060:CDS 40.0%
ACTCTGATACATTCTGCAAC+AGG - chr7_1:78582085-78582104 Msa1041060:CDS 40.0%
CTCTGATACATTCTGCAACA+GGG - chr7_1:78582086-78582105 Msa1041060:CDS 40.0%
TCTGATACATTCTGCAACAG+GGG - chr7_1:78582087-78582106 Msa1041060:CDS 40.0%
GGTTTCATTAAGAGGATGAG+TGG + chr7_1:78582148-78582167 None:intergenic 40.0%
ATGGTCACCCATCCATTTAT+GGG - chr7_1:78582277-78582296 Msa1041060:CDS 40.0%
!! TGAAGGTGTAGTGGTGGATT+TGG + chr7_1:78579217-78579236 None:intergenic 45.0%
! AGTGTTTGGTGAAGGTGTAG+TGG + chr7_1:78579226-78579245 None:intergenic 45.0%
! ACAGAGACAGTGTTTGGTGA+AGG + chr7_1:78579234-78579253 None:intergenic 45.0%
CACTTGAAGTAGCACCAACA+TGG + chr7_1:78579395-78579414 None:intergenic 45.0%
!!! GGTTTTGATTGTGAGGGGAA+TGG - chr7_1:78579612-78579631 Msa1041060:intron 45.0%
TTGTGAGGGGAATGGAAGAT+TGG - chr7_1:78579620-78579639 Msa1041060:intron 45.0%
CCTTGGAAGGTCACAATCTT+TGG + chr7_1:78579676-78579695 None:intergenic 45.0%
CCAAAGATTGTGACCTTCCA+AGG - chr7_1:78579673-78579692 Msa1041060:intron 45.0%
TTGAGAGAGACTACCTTGGA+AGG + chr7_1:78579689-78579708 None:intergenic 45.0%
CAACTTCTGGACTGCATTTG+AGG + chr7_1:78581024-78581043 None:intergenic 45.0%
! GCAGTCCAGAAGTTGCTTTA+TGG - chr7_1:78581029-78581048 Msa1041060:CDS 45.0%
AGCACATGCCAACTTTCTCT+GGG + chr7_1:78581407-78581426 None:intergenic 45.0%
ACTAGCATGTGGTTGATCAC+TGG - chr7_1:78581521-78581540 Msa1041060:intron 45.0%
ATCACTGGATTTAGCGCAAG+TGG - chr7_1:78581536-78581555 Msa1041060:intron 45.0%
AGTGTGTTTAAGTGTCCCAC+AGG - chr7_1:78581568-78581587 Msa1041060:intron 45.0%
! AAGGAACTCTAGTTCATCCC+CGG - chr7_1:78581661-78581680 Msa1041060:intron 45.0%
GCTGTAGAAACATTTAGCCG+GGG + chr7_1:78581681-78581700 None:intergenic 45.0%
! CTATGATGACTTGGGCTTCA+TGG - chr7_1:78581712-78581731 Msa1041060:intron 45.0%
GTTCAGCACCATCTCATTTC+AGG - chr7_1:78581781-78581800 Msa1041060:intron 45.0%
GACAATCCAAGTGGTTAACG+TGG + chr7_1:78582002-78582021 None:intergenic 45.0%
AGGGGAGGTAATTGGAATTC+AGG - chr7_1:78582105-78582124 Msa1041060:CDS 45.0%
GGAGGTAATTGGAATTCAGG+AGG - chr7_1:78582108-78582127 Msa1041060:CDS 45.0%
TTCAGGAGGACATTGTACAG+AGG - chr7_1:78582122-78582141 Msa1041060:CDS 45.0%
AGATGAAAACTCCCGTGACA+TGG - chr7_1:78582220-78582239 Msa1041060:CDS 45.0%
GATGGTCACCCATCCATTTA+TGG - chr7_1:78582276-78582295 Msa1041060:CDS 45.0%
! TGTAGTCATTGGTGTCTTCC+AGG - chr7_1:78582330-78582349 Msa1041060:CDS 45.0%
! GTAGTCATTGGTGTCTTCCA+GGG - chr7_1:78582331-78582350 Msa1041060:CDS 45.0%
! TAGTCATTGGTGTCTTCCAG+GGG - chr7_1:78582332-78582351 Msa1041060:CDS 45.0%
!!! AAATTCAATATTTTTTTTTT+TGG - chr7_1:78579707-78579726 Msa1041060:CDS 5.0%
! GTTTGGTGAAGGTGTAGTGG+TGG + chr7_1:78579223-78579242 None:intergenic 50.0%
CGTGCCTCATACACTCTCTT+TGG + chr7_1:78580456-78580475 None:intergenic 50.0%
! AAGAGAGTGTATGAGGCACG+TGG - chr7_1:78580456-78580475 Msa1041060:intron 50.0%
CATGGTTCGTCAAGATGGAG+AGG - chr7_1:78580728-78580747 Msa1041060:CDS 50.0%
!! GAGAAGTGCTAACCCAGCTT+TGG + chr7_1:78580804-78580823 None:intergenic 50.0%
CAGCACATGCCAACTTTCTC+TGG + chr7_1:78581408-78581427 None:intergenic 50.0%
GATACATTCTGCAACAGGGG+AGG - chr7_1:78582090-78582109 Msa1041060:CDS 50.0%
TCTGCAACAGGGGAGGTAAT+TGG - chr7_1:78582097-78582116 Msa1041060:CDS 50.0%
TTCCAGGGGTTCCAGATGTA+TGG - chr7_1:78582346-78582365 Msa1041060:CDS 50.0%
! TTCCATACATCTGGAACCCC+TGG + chr7_1:78582351-78582370 None:intergenic 50.0%
GAGTGTATGAGGCACGTGGA+AGG - chr7_1:78580460-78580479 Msa1041060:intron 55.0%
! GATGACTTGGGCTTCATGGG+TGG - chr7_1:78581716-78581735 Msa1041060:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 78578980 78582503 78578980 ID=Msa1041060;Name=Msa1041060
chr7_1 mRNA 78578980 78582503 78578980 ID=Msa1041060-mRNA-1;Parent=Msa1041060;Name=Msa1041060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=128|1|1|1|1|1|5|99|475
chr7_1 exon 78578980 78579376 78578980 ID=Msa1041060-mRNA-1:exon:21025;Parent=Msa1041060-mRNA-1
chr7_1 exon 78579681 78579839 78579681 ID=Msa1041060-mRNA-1:exon:21024;Parent=Msa1041060-mRNA-1
chr7_1 exon 78580673 78580863 78580673 ID=Msa1041060-mRNA-1:exon:21023;Parent=Msa1041060-mRNA-1
chr7_1 exon 78580959 78581151 78580959 ID=Msa1041060-mRNA-1:exon:21022;Parent=Msa1041060-mRNA-1
chr7_1 exon 78581789 78582503 78581789 ID=Msa1041060-mRNA-1:exon:21021;Parent=Msa1041060-mRNA-1
chr7_1 five_prime_UTR 78582376 78582503 78582376 ID=Msa1041060-mRNA-1:five_prime_utr;Parent=Msa1041060-mRNA-1
chr7_1 CDS 78581789 78582375 78581789 ID=Msa1041060-mRNA-1:cds;Parent=Msa1041060-mRNA-1
chr7_1 CDS 78580959 78581151 78580959 ID=Msa1041060-mRNA-1:cds;Parent=Msa1041060-mRNA-1
chr7_1 CDS 78580673 78580863 78580673 ID=Msa1041060-mRNA-1:cds;Parent=Msa1041060-mRNA-1
chr7_1 CDS 78579681 78579839 78579681 ID=Msa1041060-mRNA-1:cds;Parent=Msa1041060-mRNA-1
chr7_1 CDS 78579079 78579376 78579079 ID=Msa1041060-mRNA-1:cds;Parent=Msa1041060-mRNA-1
chr7_1 three_prime_UTR 78578980 78579078 78578980 ID=Msa1041060-mRNA-1:three_prime_utr;Parent=Msa1041060-mRNA-1
Gene Sequence

>Msa1041060

ATGGAGAGACAAAGAAGTTTCTCTTTCAAACCCACTAGACTTTTACTCTTTACATTCACACTCTTCTCTTCCATCTTCTTCCTTTCATCTTTCACTATCTGGCTCACCAAATCCACCACTACACCTTCACCAAACACTGTCTCTGTAAATCTTCAACCTTTAACTGTTCATTCATTGACCACCCAAAACTTCACTCTACAAAAAATTCCATCTTTAATAGATAACCGTCTTTCTAGAAGCCAAAAGAATGTTTCAGGATCCAAATCTGAAGCTATAGAAATCAACCATGTTGGTGCTACTTCAAGTGTTAATTTTACTTCAATGCATGGTAATAGAACAAAGGTTGAAGTGAGTGCTTTAGTGAGTAATAAGAGTGAAGTTTTGATTTTTAAGAAGGTTGAGGTGAAGAAGATAGTAAAAGAGTGTGATTTAACAAAAGGGTATTGGATTTTTGATGAAAGTTATCCTATTTATGCTAGAGATTCTTGTCCTTTTATAGATGAAGGTTTTGATTGTGAGGGGAATGGAAGATTGGATAGAAACTTTACTAAGTGGAGATGGCAACCCAAAGATTGTGACCTTCCAAGGTTCAATGCAACAAAAATGTTGGAGTTTATAAGAGGAAAAAGGCTAGTTTTTGTGGGTGATTCCATTAATAGGAACCAATGGGAATCAATGTTGTGCATGTTATTGAGTGCTGTTAAAGATCCAAAGAGAGTGTATGAGGCACGTGGAAGGAAAATTACCAAAGAGAGAGGGAACTATAGTTTCAGGTTTCTGGACTATCAATGTACAGTTGAATACTATGTGAGTCATTTCTTAGTTCATGAAAGCAAAGCAAGAGTAGGGCAGAAACGAAGACCAACTTTGCGAATTGATGCGATTGATCATGGTTCGTCAAGATGGAGAGGAGCTGATATTTTGGTTTTCAACACAGCACATTGGTGGTCACATCACAAAACCAAAGCTGGGATTTATTACTATCAAGAAGGAACTCTAGTTCATCCCCGGCTAAATGTTTCTACAGCTTTTTCGAAAGCTATGATGACTTGGGCTTCATGGGTGGACAAACACATAAATTCTAAGAAAACCCAAGTTTTCTTTCGAAGTTCAGCACCATCTCATTTCAGGGGAGGTAATTGGAATTCAGGAGGACATTGTACAGAGGCCACTCATCCTCTTAATGAAACCTTAAATACCATTTATCCTGAGAAGAATATAATCATAGAAGAGACAGTAAAGCAGATGAAAACTCCCGTGACATGGTTGAATATAACTAGTTTGTCAGAATTTAGGATAGATGGTCACCCATCCATTTATGGGAGAAAAACACAATCCTCAAGAATTCAAGATTGTAGTCATTGGTGTCTTCCAGGGGTTCCAGATGTATGGAATGAGTTGTTATTTTTTCACTTACAAAATAGATGA
Protein sequence

>Msa1041060

MERQRSFSFKPTRLLLFTFTLFSSIFFLSSFTIWLTKSTTTPSPNTVSVNLQPLTVHSLTTQNFTLQKIPSLIDNRLSRSQKNVSGSKSEAIEINHVGATSSVNFTSMHGNRTKVEVSALVSNKSEVLIFKKVEVKKIVKECDLTKGYWIFDESYPIYARDSCPFIDEGFDCEGNGRLDRNFTKWRWQPKDCDLPRFNATKMLEFIRGKRLVFVGDSINRNQWESMLCMLLSAVKDPKRVYEARGRKITKERGNYSFRFLDYQCTVEYYVSHFLVHESKARVGQKRRPTLRIDAIDHGSSRWRGADILVFNTAHWWSHHKTKAGIYYYQEGTLVHPRLNVSTAFSKAMMTWASWVDKHINSKKTQVFFRSSAPSHFRGGNWNSGGHCTEATHPLNETLNTIYPEKNIIIEETVKQMKTPVTWLNITSLSEFRIDGHPSIYGRKTQSSRIQDCSHWCLPGVPDVWNELLFFHLQNR*