Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361380 | XP_013459848.1 | 95.902 | 244 | 3 | 1 | 1 | 237 | 1 | 244 | 4.56e-172 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361380 | sp|O94903|PLPHP_HUMAN | 48.387 | 248 | 109 | 8 | 7 | 236 | 9 | 255 | 1.72e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361380 | A0A072UVQ6 | 95.902 | 244 | 3 | 1 | 1 | 237 | 1 | 244 | 2.18e-172 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074220 | Msa0361380 | 0.804488 | 2.109111e-49 | -8.615850e-47 |
| Msa0088670 | Msa0361380 | 0.800273 | 1.557086e-48 | -8.615850e-47 |
| Msa0116200 | Msa0361380 | 0.800415 | 1.456586e-48 | -8.615850e-47 |
| Msa0155350 | Msa0361380 | 0.804471 | 2.126360e-49 | -8.615850e-47 |
| Msa0361380 | Msa0398850 | 0.800784 | 1.225330e-48 | -8.615850e-47 |
| Msa0361380 | Msa0539400 | 0.809549 | 1.791361e-50 | -8.615850e-47 |
| Msa0361380 | Msa0625310 | 0.822476 | 2.321101e-53 | -8.615850e-47 |
| Msa0361380 | Msa0849290 | 0.800162 | 1.639963e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361380 | MtrunA17_Chr3g0099621 | 95.902 | 244 | 3 | 1 | 1 | 237 | 1 | 244 | 4.19e-176 | 483 |
| Msa0361380 | MtrunA17_Chr2g0288961 | 63.115 | 244 | 81 | 2 | 1 | 237 | 1 | 242 | 1.26e-113 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0361380 | AT4G26860.1 | 73.251 | 243 | 57 | 2 | 1 | 236 | 1 | 242 | 3.80e-133 | 375 |
| Msa0361380 | AT4G26860.2 | 70.356 | 253 | 57 | 3 | 1 | 236 | 1 | 252 | 1.35e-129 | 366 |
| Msa0361380 | AT1G11930.2 | 71.250 | 240 | 60 | 2 | 6 | 236 | 16 | 255 | 9.71e-124 | 352 |
| Msa0361380 | AT1G11930.1 | 70.661 | 242 | 60 | 3 | 6 | 236 | 16 | 257 | 1.19e-121 | 346 |
Find 91 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGAAATGGGTTTGGTTT+TGG | 0.202191 | 3_1:+51780997 | None:intergenic |
| CCCTCAACCATGGCCAAATT+TGG | 0.203865 | 3_1:+51779418 | None:intergenic |
| AGAATAGGTTCAACAATATT+TGG | 0.212372 | 3_1:-51776403 | Msa0361380:CDS |
| TGTAGGCGGAGTTCCAAATT+TGG | 0.251833 | 3_1:-51779431 | Msa0361380:intron |
| GAGCTTTCTCAACGATTTCT+TGG | 0.267769 | 3_1:+51780924 | None:intergenic |
| CTCAACTCCGCAGAACTTTC+GGG | 0.271171 | 3_1:-51777864 | Msa0361380:intron |
| GACGCAGGTCATAGAGTCTT+TGG | 0.284655 | 3_1:-51780959 | Msa0361380:CDS |
| AAGCATACTCAGAAGTGTTT+TGG | 0.293617 | 3_1:+51779971 | None:intergenic |
| CTTCAGTCCTGCAATTTGAT+AGG | 0.293960 | 3_1:+51777650 | None:intergenic |
| CCTCAACTCCGCAGAACTTT+CGG | 0.295923 | 3_1:-51777865 | Msa0361380:CDS |
| CGGATCTTTCCGCTGCTTGT+TGG | 0.298445 | 3_1:+51781056 | None:intergenic |
| ACAAGCAACACAAAATAAAA+TGG | 0.301129 | 3_1:+51781175 | None:intergenic |
| CGTGATTATTCTTAATAATC+TGG | 0.302849 | 3_1:-51775976 | Msa0361380:three_prime_UTR |
| TATCTTCAATGACTATTTGC+AGG | 0.303919 | 3_1:-51776010 | Msa0361380:three_prime_UTR |
| AATAAAACACAATACCATTT+AGG | 0.318125 | 3_1:+51776284 | None:intergenic |
| AAGAAATCGTCTGAGGGTTT+TGG | 0.327681 | 3_1:-51779065 | Msa0361380:CDS |
| TATGGCACAGATCTCCTAAA+TGG | 0.365376 | 3_1:-51776298 | Msa0361380:intron |
| GATATCCAGTGGCACTTCAT+TGG | 0.369697 | 3_1:-51780014 | Msa0361380:CDS |
| AAGCCAGAGAATTCTAAGTT+TGG | 0.370526 | 3_1:+51777914 | None:intergenic |
| TCCAAATTTGGCCATGGTTG+AGG | 0.377384 | 3_1:-51779419 | Msa0361380:CDS |
| GATCCAAACCCGATCGAGTT+CGG | 0.378479 | 3_1:-51781033 | Msa0361380:CDS |
| GAATGCTTGTTCATGCTACT+TGG | 0.383929 | 3_1:-51776150 | Msa0361380:three_prime_UTR |
| CCAAATTTGGCCATGGTTGA+GGG | 0.387342 | 3_1:-51779418 | Msa0361380:CDS |
| GACCCGAACTCGATCGGGTT+TGG | 0.389360 | 3_1:+51781030 | None:intergenic |
| ACGCAGGTCATAGAGTCTTT+GGG | 0.391806 | 3_1:-51780958 | Msa0361380:CDS |
| ATCCAAACCCGATCGAGTTC+GGG | 0.394346 | 3_1:-51781032 | Msa0361380:CDS |
| CCCTCAGACGATTTCTTCCC+AGG | 0.401232 | 3_1:+51779071 | None:intergenic |
| TGTAGACCCTATCAAATTGC+AGG | 0.402948 | 3_1:-51777657 | Msa0361380:intron |
| AGTTTGCAAGGCACTTGAAA+TGG | 0.408160 | 3_1:-51777629 | Msa0361380:CDS |
| AAGTAGACATGATTACATTA+TGG | 0.414496 | 3_1:-51776316 | Msa0361380:three_prime_UTR |
| GCAGCAGCTTCCGCCATCAC+TGG | 0.417932 | 3_1:+51781112 | None:intergenic |
| TTTGGCCATGGTTGAGGGAG+TGG | 0.425743 | 3_1:-51779413 | Msa0361380:CDS |
| GAGTTGGCGAATCATAGAAA+TGG | 0.426278 | 3_1:+51780985 | None:intergenic |
| GGAGCAATGTGAACTGTCAA+TGG | 0.426611 | 3_1:-51777602 | Msa0361380:CDS |
| AACTCGATCGGGTTTGGATC+CGG | 0.434921 | 3_1:+51781036 | None:intergenic |
| TGACCGTATGGTTTCAAACC+TGG | 0.441164 | 3_1:-51779089 | Msa0361380:CDS |
| GCGAATCATAGAAATGGGTT+TGG | 0.446886 | 3_1:+51780991 | None:intergenic |
| GGCAAATAACCTTGACCGTA+TGG | 0.454246 | 3_1:-51779101 | Msa0361380:CDS |
| ATATCCAGTGGCACTTCATT+GGG | 0.458508 | 3_1:-51780013 | Msa0361380:CDS |
| TGTCCAAACTTAGAATTCTC+TGG | 0.463779 | 3_1:-51777917 | Msa0361380:CDS |
| TGAATTATGAACATCCAGTT+AGG | 0.466821 | 3_1:+51775921 | None:intergenic |
| TTCTCTGGCTTAATGACAAT+AGG | 0.469053 | 3_1:-51777902 | Msa0361380:CDS |
| AGTTGGCGAATCATAGAAAT+GGG | 0.472698 | 3_1:+51780986 | None:intergenic |
| GGTAGTACTAATGTGAGAAT+AGG | 0.479946 | 3_1:-51776418 | Msa0361380:CDS |
| GAACTGTCAATGGGCATGTC+TGG | 0.485338 | 3_1:-51777592 | Msa0361380:CDS |
| TTCAGTCCTGCAATTTGATA+GGG | 0.493507 | 3_1:+51777651 | None:intergenic |
| TTTCCGCTGCTTGTTGGACA+CGG | 0.495324 | 3_1:+51781062 | None:intergenic |
| CAACAAGCAGCGGAAAGATC+CGG | 0.499909 | 3_1:-51781055 | Msa0361380:CDS |
| GCAACGACCCGAACTCGATC+GGG | 0.502938 | 3_1:+51781025 | None:intergenic |
| TGCGGAGTTGAGGTATAGTC+TGG | 0.506981 | 3_1:+51777875 | None:intergenic |
| CGGAGTTCCAAATTTGGCCA+TGG | 0.516134 | 3_1:-51779425 | Msa0361380:CDS |
| TGTTCATGCTACTTGGAAAG+AGG | 0.519291 | 3_1:-51776143 | Msa0361380:three_prime_UTR |
| TGCAACGACCCGAACTCGAT+CGG | 0.532215 | 3_1:+51781024 | None:intergenic |
| TTCCCAGGTTTGAAACCATA+CGG | 0.534502 | 3_1:+51779086 | None:intergenic |
| ATCTTCAATGACTATTTGCA+GGG | 0.535704 | 3_1:-51776009 | Msa0361380:three_prime_UTR |
| TGCTACTTGGAAAGAGGGAG+AGG | 0.539942 | 3_1:-51776137 | Msa0361380:three_prime_UTR |
| GCCATCACTGGAGATGTCAT+TGG | 0.544398 | 3_1:+51781124 | None:intergenic |
| AATCGTTGAGAAAGCTCCTC+AGG | 0.548191 | 3_1:-51780918 | Msa0361380:intron |
| CCGAAAGTTCTGCGGAGTTG+AGG | 0.549382 | 3_1:+51777865 | None:intergenic |
| GAGCAATGTGAACTGTCAAT+GGG | 0.553747 | 3_1:-51777601 | Msa0361380:CDS |
| GACCGTATGGTTTCAAACCT+GGG | 0.557992 | 3_1:-51779088 | Msa0361380:CDS |
| AATGCCCAATGAAGTGCCAC+TGG | 0.571037 | 3_1:+51780009 | None:intergenic |
| CGCAGGTCATAGAGTCTTTG+GGG | 0.571253 | 3_1:-51780957 | Msa0361380:CDS |
| CAAGGCACTTGAAATGGACG+AGG | 0.572444 | 3_1:-51777623 | Msa0361380:CDS |
| GGTTTGAAACCATACGGTCA+AGG | 0.578649 | 3_1:+51779092 | None:intergenic |
| TTGCAGGACTGAAGTTTGCA+AGG | 0.579031 | 3_1:-51777641 | Msa0361380:CDS |
| TACTGATCGGAAAGCTAAGA+CGG | 0.579948 | 3_1:+51781090 | None:intergenic |
| ACCAATGACATCTCCAGTGA+TGG | 0.582401 | 3_1:-51781125 | Msa0361380:exon |
| GGTGTGTCTGTGTGTTGAGG+TGG | 0.584276 | 3_1:+51781148 | None:intergenic |
| TATGACCTGCGTCATAGAGT+TGG | 0.585309 | 3_1:+51780969 | None:intergenic |
| ATTCGCCAACTCTATGACGC+AGG | 0.587190 | 3_1:-51780974 | Msa0361380:CDS |
| GCAAGATCAACACAATCGGA+AGG | 0.593111 | 3_1:+51777959 | None:intergenic |
| CCTGGGAAGAAATCGTCTGA+GGG | 0.593514 | 3_1:-51779071 | Msa0361380:CDS |
| GTTCATGCTACTTGGAAAGA+GGG | 0.594095 | 3_1:-51776142 | Msa0361380:three_prime_UTR |
| GGTGGTGTGTCTGTGTGTTG+AGG | 0.595574 | 3_1:+51781145 | None:intergenic |
| AGATGGTCACGGTATAATGA+TGG | 0.596265 | 3_1:+51776077 | None:intergenic |
| ACCTGGGAAGAAATCGTCTG+AGG | 0.602661 | 3_1:-51779072 | Msa0361380:CDS |
| CAGATTATTAAGAATAATCA+CGG | 0.604482 | 3_1:+51775977 | None:intergenic |
| ATCACTGGAGATGTCATTGG+TGG | 0.616942 | 3_1:+51781127 | None:intergenic |
| ATTGTCCACTCCCTCAACCA+TGG | 0.626574 | 3_1:+51779408 | None:intergenic |
| TGAGGGAGTGGACAATCAGA+AGG | 0.626680 | 3_1:-51779401 | Msa0361380:intron |
| AAGTGCCACTGGATATCTTG+CGG | 0.630043 | 3_1:+51780020 | None:intergenic |
| TCATGTCTACTTTAGACAGA+GGG | 0.631581 | 3_1:+51776327 | None:intergenic |
| AATGACATCTCCAGTGATGG+CGG | 0.643646 | 3_1:-51781122 | Msa0361380:CDS |
| GCTCCGTGTCCAACAAGCAG+CGG | 0.649023 | 3_1:-51781065 | Msa0361380:CDS |
| GCTACTTGGAAAGAGGGAGA+GGG | 0.659694 | 3_1:-51776136 | Msa0361380:three_prime_UTR |
| AGCTTCCGCAAGATATCCAG+TGG | 0.660486 | 3_1:-51780025 | Msa0361380:CDS |
| GGACACGGAGCATTACTGAT+CGG | 0.662757 | 3_1:+51781077 | None:intergenic |
| ATTATGAACATCCAGTTAGG+TGG | 0.670757 | 3_1:+51775924 | None:intergenic |
| ATCATGTCTACTTTAGACAG+AGG | 0.673995 | 3_1:+51776326 | None:intergenic |
| ACTATTACCCGAAAGTTCTG+CGG | 0.684747 | 3_1:+51777857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATAATTATAATTT+AGG | - | chr3_1:51777823-51777842 | Msa0361380:intron | 0.0% |
| !!! | TTTACAAATAATTTTTAAGT+AGG | - | chr3_1:51776577-51776596 | Msa0361380:intron | 10.0% |
| !!! | TTTTATTATATCAATTACAA+TGG | + | chr3_1:51780844-51780863 | None:intergenic | 10.0% |
| !!! | TTTGTCAATTTCTTAATTTT+AGG | - | chr3_1:51776872-51776891 | Msa0361380:intron | 15.0% |
| !!! | TTGTCAATTTCTTAATTTTA+GGG | - | chr3_1:51776873-51776892 | Msa0361380:intron | 15.0% |
| !!! | CATTTATTCTAAGTTATTTT+AGG | + | chr3_1:51777439-51777458 | None:intergenic | 15.0% |
| !! | ATCATATAAAGTATAAACAT+CGG | + | chr3_1:51777540-51777559 | None:intergenic | 15.0% |
| !!! | AAATCCTTGTTATATTTTTT+TGG | - | chr3_1:51778117-51778136 | Msa0361380:intron | 15.0% |
| !! | ATAACCAAAAAAATATAACA+AGG | + | chr3_1:51778124-51778143 | None:intergenic | 15.0% |
| !! | TATTGTATTATTGATAGAAA+GGG | + | chr3_1:51778483-51778502 | None:intergenic | 15.0% |
| !! | ATATTGTATTATTGATAGAA+AGG | + | chr3_1:51778484-51778503 | None:intergenic | 15.0% |
| !! | AATAGAAAAGTAAAACAATA+TGG | + | chr3_1:51778991-51779010 | None:intergenic | 15.0% |
| !!! | TTTACTTTTCTATTATGTAT+TGG | - | chr3_1:51778997-51779016 | Msa0361380:intron | 15.0% |
| !! | TTAACAAGTTTATCTATTTA+AGG | + | chr3_1:51779084-51779103 | None:intergenic | 15.0% |
| !! | GTTAGAGAAAAAAAAAAAAT+AGG | - | chr3_1:51779845-51779864 | Msa0361380:intron | 15.0% |
| !! | ATGTATATTTGAATATAACT+TGG | - | chr3_1:51780220-51780239 | Msa0361380:intron | 15.0% |
| !!! | TTTAAAATGCAAAATGAAGA+AGG | + | chr3_1:51776229-51776248 | None:intergenic | 20.0% |
| !! | CATAACTAACTACAATTTAA+TGG | + | chr3_1:51776273-51776292 | None:intergenic | 20.0% |
| !!! | GTCATTTTTAAAATGATTAC+CGG | - | chr3_1:51776754-51776773 | Msa0361380:intron | 20.0% |
| !!! | TTTTTTTTTGTAGTTTCACT+AGG | - | chr3_1:51777244-51777263 | Msa0361380:intron | 20.0% |
| !! | AACATCCTTCATATTTATAA+AGG | - | chr3_1:51777564-51777583 | Msa0361380:intron | 20.0% |
| !! | TAACTCCTTTATAAATATGA+AGG | + | chr3_1:51777572-51777591 | None:intergenic | 20.0% |
| !! | TATTTATAAAGGAGTTATCT+TGG | - | chr3_1:51777575-51777594 | Msa0361380:intron | 20.0% |
| !! | TTCTTTATCATCCTTATATT+AGG | - | chr3_1:51777620-51777639 | Msa0361380:CDS | 20.0% |
| !!! | ATTTAGTATTTTCTGTTGAT+AGG | - | chr3_1:51777846-51777865 | Msa0361380:intron | 20.0% |
| !!! | TTTAGTATTTTCTGTTGATA+GGG | - | chr3_1:51777847-51777866 | Msa0361380:intron | 20.0% |
| !! | AAATGATTATGATATTTCAG+AGG | - | chr3_1:51778288-51778307 | Msa0361380:intron | 20.0% |
| !! | TTTAATTATATTCCGACTTA+TGG | + | chr3_1:51778692-51778711 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGAATCATTTCG+TGG | - | chr3_1:51779345-51779364 | Msa0361380:intron | 20.0% |
| !!! | ATTTTTTAGAATCATTTCGT+GGG | - | chr3_1:51779346-51779365 | Msa0361380:intron | 20.0% |
| !! | CTTGAAATATCTGATAATTA+TGG | - | chr3_1:51779619-51779638 | Msa0361380:intron | 20.0% |
| !! | AATAGTTTATAGTTAGAGAT+TGG | - | chr3_1:51779727-51779746 | Msa0361380:intron | 20.0% |
| !! | AATATGATTTAGTTATCTCA+TGG | - | chr3_1:51779782-51779801 | Msa0361380:intron | 20.0% |
| !!! | GGTTATTTTAATCAATGATA+GGG | - | chr3_1:51779965-51779984 | Msa0361380:intron | 20.0% |
| !!! | GTTATTTTAATCAATGATAG+GGG | - | chr3_1:51779966-51779985 | Msa0361380:intron | 20.0% |
| !! | AACAAAATTTGACAACAATT+TGG | - | chr3_1:51780014-51780033 | Msa0361380:CDS | 20.0% |
| !! | AATTCAATAATTGTGTTATG+TGG | + | chr3_1:51780125-51780144 | None:intergenic | 20.0% |
| !! | ATATTTGAATATAACTTGGA+TGG | - | chr3_1:51780224-51780243 | Msa0361380:intron | 20.0% |
| !! | AATAAAACACAATACCATTT+AGG | + | chr3_1:51780820-51780839 | None:intergenic | 20.0% |
| !! | CAGATTATTAAGAATAATCA+CGG | + | chr3_1:51781127-51781146 | None:intergenic | 20.0% |
| ! | ACAAGCAACACAAAATAAAA+TGG | + | chr3_1:51775929-51775948 | None:intergenic | 25.0% |
| !!! | TCTTTTAGCAATATTTTGAG+TGG | - | chr3_1:51776523-51776542 | Msa0361380:intron | 25.0% |
| ! | TATAATTTCAGGGACAAATT+TGG | - | chr3_1:51776913-51776932 | Msa0361380:intron | 25.0% |
| ! | ATAATTTCAGGGACAAATTT+GGG | - | chr3_1:51776914-51776933 | Msa0361380:intron | 25.0% |
| !! | GCTGTAAAGTTCTAATAATT+TGG | - | chr3_1:51777035-51777054 | Msa0361380:intron | 25.0% |
| !! | AGTTCTAATAATTTGGTCTT+CGG | - | chr3_1:51777042-51777061 | Msa0361380:intron | 25.0% |
| ! | GTTAACGTTTACCTAATATA+AGG | + | chr3_1:51777634-51777653 | None:intergenic | 25.0% |
| !!! | TATGCTTTAATTTGATCTTC+AGG | - | chr3_1:51777789-51777808 | Msa0361380:intron | 25.0% |
| !! | ATTCCTTTTAGATAACTAGT+TGG | - | chr3_1:51777873-51777892 | Msa0361380:CDS | 25.0% |
| ! | TAAAGGTTTGTCAAATGATA+TGG | + | chr3_1:51777949-51777968 | None:intergenic | 25.0% |
| !!! | TATTTTTTTGGTTATTTGCG+AGG | - | chr3_1:51778129-51778148 | Msa0361380:intron | 25.0% |
| ! | TGACCAATTCTGTTATAAAT+AGG | - | chr3_1:51778329-51778348 | Msa0361380:intron | 25.0% |
| ! | ACACCTATTTATAACAGAAT+TGG | + | chr3_1:51778335-51778354 | None:intergenic | 25.0% |
| !! | AGTGATTATGTTAGTTTCTA+AGG | - | chr3_1:51778754-51778773 | Msa0361380:intron | 25.0% |
| !!! | TAGTTATATTCTAAAGCATG+TGG | - | chr3_1:51779263-51779282 | Msa0361380:intron | 25.0% |
| ! | ATAATATGAACTCAAGAAAC+AGG | + | chr3_1:51779306-51779325 | None:intergenic | 25.0% |
| !! | ATCTGATAATTATGGTCTTA+TGG | - | chr3_1:51779627-51779646 | Msa0361380:intron | 25.0% |
| ! | AATGAATTGACATCTAATAC+TGG | - | chr3_1:51779671-51779690 | Msa0361380:intron | 25.0% |
| ! | GAACGTAATTAACTTCTAAT+GGG | + | chr3_1:51779937-51779956 | None:intergenic | 25.0% |
| ! | TGATTAAAATAACCCATTCT+CGG | + | chr3_1:51779959-51779978 | None:intergenic | 25.0% |
| !!! | GGGTTATTTTAATCAATGAT+AGG | - | chr3_1:51779964-51779983 | Msa0361380:intron | 25.0% |
| ! | AAATTTGACAACAATTTGGA+TGG | - | chr3_1:51780018-51780037 | Msa0361380:CDS | 25.0% |
| ! | GTTAATGCAATTCAAATACA+TGG | - | chr3_1:51780040-51780059 | Msa0361380:intron | 25.0% |
| ! | GTGTTATGTGGATAATTAAT+AGG | + | chr3_1:51780113-51780132 | None:intergenic | 25.0% |
| ! | AAATCTACACCTAAAAATTG+CGG | + | chr3_1:51780172-51780191 | None:intergenic | 25.0% |
| ! | TAACCAACCATATATTCAAA+CGG | - | chr3_1:51780385-51780404 | Msa0361380:intron | 25.0% |
| ! | AGAATAGGTTCAACAATATT+TGG | - | chr3_1:51780698-51780717 | Msa0361380:intron | 25.0% |
| ! | AAGTAGACATGATTACATTA+TGG | - | chr3_1:51780785-51780804 | Msa0361380:intron | 25.0% |
| !!! | TTTTCTATGTAGTTTGTTCT+TGG | + | chr3_1:51780901-51780920 | None:intergenic | 25.0% |
| ! | CGTGATTATTCTTAATAATC+TGG | - | chr3_1:51781125-51781144 | Msa0361380:exon | 25.0% |
| AAAAAAAGTTTGAGTACCTG+AGG | + | chr3_1:51776202-51776221 | None:intergenic | 30.0% | |
| GTAATCATAGATATAGCTGT+CGG | + | chr3_1:51776350-51776369 | None:intergenic | 30.0% | |
| TTATTATCTGTGTTGTGTGT+TGG | - | chr3_1:51776397-51776416 | Msa0361380:CDS | 30.0% | |
| CATGTTATCATATGAATGCT+TGG | - | chr3_1:51776445-51776464 | Msa0361380:intron | 30.0% | |
| ATGAATGTAATCACATGAGT+TGG | + | chr3_1:51776732-51776751 | None:intergenic | 30.0% | |
| TCGCTAGCAAATATAATTTC+AGG | - | chr3_1:51776902-51776921 | Msa0361380:intron | 30.0% | |
| CGCTAGCAAATATAATTTCA+GGG | - | chr3_1:51776903-51776922 | Msa0361380:intron | 30.0% | |
| TAATTTCAGGGACAAATTTG+GGG | - | chr3_1:51776915-51776934 | Msa0361380:intron | 30.0% | |
| !!! | TGTGTTATTTTTGTTCTGTC+TGG | - | chr3_1:51777013-51777032 | Msa0361380:intron | 30.0% |
| ! | GTTCTAATAATTTGGTCTTC+GGG | - | chr3_1:51777043-51777062 | Msa0361380:intron | 30.0% |
| CACTAGGATGTTCAATAAAA+AGG | - | chr3_1:51777260-51777279 | Msa0361380:intron | 30.0% | |
| TAGGATGTTCAATAAAAAGG+CGG | - | chr3_1:51777263-51777282 | Msa0361380:intron | 30.0% | |
| !! | CTAAACTCAAAAGCATTCTA+AGG | + | chr3_1:51777289-51777308 | None:intergenic | 30.0% |
| ! | AGAAGTTGAAATCAGCTTTT+GGG | + | chr3_1:51777367-51777386 | None:intergenic | 30.0% |
| ! | AAGAAGTTGAAATCAGCTTT+TGG | + | chr3_1:51777368-51777387 | None:intergenic | 30.0% |
| ! | AAACTCCATAGAGTATCTAA+TGG | - | chr3_1:51777393-51777412 | Msa0361380:intron | 30.0% |
| CTTATCCATTAGATACTCTA+TGG | + | chr3_1:51777401-51777420 | None:intergenic | 30.0% | |
| ! | AATGGATAAGTGCTTGATTT+TGG | - | chr3_1:51777411-51777430 | Msa0361380:intron | 30.0% |
| !! | ATTATCTAGACAGTTCTAAG+TGG | - | chr3_1:51777472-51777491 | Msa0361380:intron | 30.0% |
| CCTACATAATAAAACATGCA+AGG | + | chr3_1:51777656-51777675 | None:intergenic | 30.0% | |
| !! | CCTTGCATGTTTTATTATGT+AGG | - | chr3_1:51777653-51777672 | Msa0361380:CDS | 30.0% |
| !! | TGCATGTTTTATTATGTAGG+CGG | - | chr3_1:51777656-51777675 | Msa0361380:intron | 30.0% |
| ACTCCAACTAGTTATCTAAA+AGG | + | chr3_1:51777879-51777898 | None:intergenic | 30.0% | |
| AGCTTATTGAAATCACAGTT+TGG | + | chr3_1:51777903-51777922 | None:intergenic | 30.0% | |
| GAAGTACAAGAACACTTTAA+AGG | + | chr3_1:51777966-51777985 | None:intergenic | 30.0% | |
| TTATGATATTTCAGAGGCTA+CGG | - | chr3_1:51778294-51778313 | Msa0361380:intron | 30.0% | |
| ATAAATAGGTGTGAAAAGAG+AGG | - | chr3_1:51778343-51778362 | Msa0361380:intron | 30.0% | |
| TAAATAGGTGTGAAAAGAGA+GGG | - | chr3_1:51778344-51778363 | Msa0361380:intron | 30.0% | |
| ! | CAGAGATTTATCTCTTTTTG+AGG | - | chr3_1:51778411-51778430 | Msa0361380:intron | 30.0% |
| ! | TATCTTCTCCTCTTAATTTG+AGG | - | chr3_1:51778501-51778520 | Msa0361380:intron | 30.0% |
| AGTCACAACATACACAATAA+GGG | + | chr3_1:51778556-51778575 | None:intergenic | 30.0% | |
| AAGTCACAACATACACAATA+AGG | + | chr3_1:51778557-51778576 | None:intergenic | 30.0% | |
| TTCCTGACACTAAATTAAGA+AGG | + | chr3_1:51778630-51778649 | None:intergenic | 30.0% | |
| TCTGATGTAATTCCATAAGT+CGG | - | chr3_1:51778677-51778696 | Msa0361380:intron | 30.0% | |
| TTTGTCTAGCAAAAAAAGAG+AGG | + | chr3_1:51778722-51778741 | None:intergenic | 30.0% | |
| !! | ACACTAACTTTGGAATAAGA+GGG | + | chr3_1:51778866-51778885 | None:intergenic | 30.0% |
| !! | TACACTAACTTTGGAATAAG+AGG | + | chr3_1:51778867-51778886 | None:intergenic | 30.0% |
| TTATTCCAAAGTTAGTGTAG+TGG | - | chr3_1:51778868-51778887 | Msa0361380:intron | 30.0% | |
| ATTCATTGCAGATAATGACA+TGG | - | chr3_1:51778907-51778926 | Msa0361380:intron | 30.0% | |
| TAGTTCAACAGCTATTAGAT+TGG | - | chr3_1:51778950-51778969 | Msa0361380:intron | 30.0% | |
| ! | TTTTGCAAGATCAACACAAT+CGG | + | chr3_1:51779149-51779168 | None:intergenic | 30.0% |
| ! | ACTGTAATGTCTATTTGCTA+AGG | - | chr3_1:51779403-51779422 | Msa0361380:CDS | 30.0% |
| ATTGACATCTAATACTGGAA+TGG | - | chr3_1:51779676-51779695 | Msa0361380:intron | 30.0% | |
| !!! | TACTGGAATGGTCTTTTTTT+TGG | - | chr3_1:51779688-51779707 | Msa0361380:intron | 30.0% |
| GGAACGTAATTAACTTCTAA+TGG | + | chr3_1:51779938-51779957 | None:intergenic | 30.0% | |
| !!! | CTGGGTTATTTTAACACAAT+GGG | - | chr3_1:51779989-51780008 | Msa0361380:CDS | 30.0% |
| GGTTAATTACGTTAAGTAGA+TGG | - | chr3_1:51780061-51780080 | Msa0361380:intron | 30.0% | |
| GTCAATGACATTCAAAATTG+TGG | + | chr3_1:51780150-51780169 | None:intergenic | 30.0% | |
| ! | TTGTTGTTAATTACGTTCAG+TGG | - | chr3_1:51780310-51780329 | Msa0361380:intron | 30.0% |
| GATGGTTACTGAATAAAACA+AGG | + | chr3_1:51780356-51780375 | None:intergenic | 30.0% | |
| ! | ATATGGTTGGTTACATTAAG+TGG | + | chr3_1:51780378-51780397 | None:intergenic | 30.0% |
| ! | GTTAATGCCGTTTGAATATA+TGG | + | chr3_1:51780395-51780414 | None:intergenic | 30.0% |
| AGATGATTAAGGAAAACTGT+AGG | - | chr3_1:51780480-51780499 | Msa0361380:intron | 30.0% | |
| AGGCTAAAAATATAAGACCA+AGG | - | chr3_1:51780500-51780519 | Msa0361380:intron | 30.0% | |
| ATCATATCTAAAGGTTTCCT+TGG | + | chr3_1:51780520-51780539 | None:intergenic | 30.0% | |
| GAGTCATGAATCATATCTAA+AGG | + | chr3_1:51780529-51780548 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTTGCATACTCTCT+TGG | + | chr3_1:51780725-51780744 | None:intergenic | 30.0% |
| ! | GTTAAGTTTCTTTTTGCAGA+TGG | + | chr3_1:51781044-51781063 | None:intergenic | 30.0% |
| TATCTTCAATGACTATTTGC+AGG | - | chr3_1:51781091-51781110 | Msa0361380:CDS | 30.0% | |
| ATCTTCAATGACTATTTGCA+GGG | - | chr3_1:51781092-51781111 | Msa0361380:CDS | 30.0% | |
| !!! | TTATTTTTTTGCCACCTAAC+TGG | - | chr3_1:51781166-51781185 | Msa0361380:five_prime_UTR | 30.0% |
| TGAATTATGAACATCCAGTT+AGG | + | chr3_1:51781183-51781202 | None:intergenic | 30.0% | |
| !! | CATAGAAATGGGTTTGGTTT+TGG | + | chr3_1:51776107-51776126 | None:intergenic | 35.0% |
| AGTTGGCGAATCATAGAAAT+GGG | + | chr3_1:51776118-51776137 | None:intergenic | 35.0% | |
| !!! | AAGCATACTCAGAAGTGTTT+TGG | + | chr3_1:51777133-51777152 | None:intergenic | 35.0% |
| TGCCAAAAACAAGTTTATCC+CGG | + | chr3_1:51777498-51777517 | None:intergenic | 35.0% | |
| AGTATAAACATCGGAAACAG+TGG | + | chr3_1:51777531-51777550 | None:intergenic | 35.0% | |
| TAAAGGAGTTATCTTGGTTG+AGG | - | chr3_1:51777581-51777600 | Msa0361380:CDS | 35.0% | |
| TTATCTTGGTTGAGGTTGTT+TGG | - | chr3_1:51777589-51777608 | Msa0361380:CDS | 35.0% | |
| ! | TTCATATCTCTAAGAGCTAC+TGG | + | chr3_1:51777748-51777767 | None:intergenic | 35.0% |
| TTGTCAAATGATATGGCAAG+TGG | + | chr3_1:51777942-51777961 | None:intergenic | 35.0% | |
| TGTTCTTGTACTTCTGTAAC+TGG | - | chr3_1:51777972-51777991 | Msa0361380:intron | 35.0% | |
| CATATGGGATCCAAATAGTA+TGG | + | chr3_1:51778185-51778204 | None:intergenic | 35.0% | |
| GGAATTAACTAATGGCCTTT+GGG | + | chr3_1:51778218-51778237 | None:intergenic | 35.0% | |
| GTGTGATGCTAGTAAAATTG+AGG | - | chr3_1:51778257-51778276 | Msa0361380:intron | 35.0% | |
| GATGCTAGTAAAATTGAGGA+AGG | - | chr3_1:51778261-51778280 | Msa0361380:intron | 35.0% | |
| CTAGTAAAATTGAGGAAGGA+GGG | - | chr3_1:51778265-51778284 | Msa0361380:intron | 35.0% | |
| TATGATATTTCAGAGGCTAC+GGG | - | chr3_1:51778295-51778314 | Msa0361380:intron | 35.0% | |
| !! | CTTTACAGTTCTAAGAGCAT+AGG | + | chr3_1:51778381-51778400 | None:intergenic | 35.0% |
| CTATGCTCTTAGAACTGTAA+AGG | - | chr3_1:51778379-51778398 | Msa0361380:intron | 35.0% | |
| CTCTTAGAACTGTAAAGGTT+GGG | - | chr3_1:51778384-51778403 | Msa0361380:intron | 35.0% | |
| GATAGGAACCTCAAATTAAG+AGG | + | chr3_1:51778512-51778531 | None:intergenic | 35.0% | |
| ! | TCTGCATCACTGTAATTTTG+TGG | - | chr3_1:51778584-51778603 | Msa0361380:intron | 35.0% |
| GACACTAAATTAAGAAGGCT+CGG | + | chr3_1:51778625-51778644 | None:intergenic | 35.0% | |
| AGCCTTCTTAATTTAGTGTC+AGG | - | chr3_1:51778625-51778644 | Msa0361380:intron | 35.0% | |
| !! | TTGAAGGAGTTTTAACCAAG+AGG | + | chr3_1:51778793-51778812 | None:intergenic | 35.0% |
| !! | ACTAACTTTGGAATAAGAGG+GGG | + | chr3_1:51778864-51778883 | None:intergenic | 35.0% |
| !! | CACTAACTTTGGAATAAGAG+GGG | + | chr3_1:51778865-51778884 | None:intergenic | 35.0% |
| AAAAGCCACTACACTAACTT+TGG | + | chr3_1:51778876-51778895 | None:intergenic | 35.0% | |
| GTGCATTGTTTGTCAGAATA+CGG | - | chr3_1:51779048-51779067 | Msa0361380:intron | 35.0% | |
| AATATTGTTGCAGCCAAATC+AGG | - | chr3_1:51779112-51779131 | Msa0361380:intron | 35.0% | |
| TGTCCAAACTTAGAATTCTC+TGG | - | chr3_1:51779184-51779203 | Msa0361380:intron | 35.0% | |
| AAGCCAGAGAATTCTAAGTT+TGG | + | chr3_1:51779190-51779209 | None:intergenic | 35.0% | |
| ! | TTCTCTGGCTTAATGACAAT+AGG | - | chr3_1:51779199-51779218 | Msa0361380:intron | 35.0% |
| TTCAGTCCTGCAATTTGATA+GGG | + | chr3_1:51779453-51779472 | None:intergenic | 35.0% | |
| ! | TTGATAGTTGCATTACGTGA+TGG | - | chr3_1:51779593-51779612 | Msa0361380:intron | 35.0% |
| !!! | TGGATGCTTTTTAGCTCATA+AGG | - | chr3_1:51779647-51779666 | Msa0361380:intron | 35.0% |
| !!! | GGATGCTTTTTAGCTCATAA+GGG | - | chr3_1:51779648-51779667 | Msa0361380:intron | 35.0% |
| TCCACAAGCTACATAAAACA+AGG | + | chr3_1:51779902-51779921 | None:intergenic | 35.0% | |
| !! | TTGTTTTATGTAGCTTGTGG+AGG | - | chr3_1:51779901-51779920 | Msa0361380:intron | 35.0% |
| AGTTAATTACGTTCCGAGAA+TGG | - | chr3_1:51779943-51779962 | Msa0361380:intron | 35.0% | |
| GTTAATTACGTTCCGAGAAT+GGG | - | chr3_1:51779944-51779963 | Msa0361380:intron | 35.0% | |
| ! | TTTTAATCAATGATAGGGGC+TGG | - | chr3_1:51779970-51779989 | Msa0361380:intron | 35.0% |
| TTTAATCAATGATAGGGGCT+GGG | - | chr3_1:51779971-51779990 | Msa0361380:intron | 35.0% | |
| !!! | GCTGGGTTATTTTAACACAA+TGG | - | chr3_1:51779988-51780007 | Msa0361380:CDS | 35.0% |
| ! | TGTCATTGACCGCAATTTTT+AGG | - | chr3_1:51780160-51780179 | Msa0361380:intron | 35.0% |
| GATTGATCACTTGACAATCA+TGG | - | chr3_1:51780271-51780290 | Msa0361380:intron | 35.0% | |
| TACGTTCAGTGGATGATTAA+CGG | - | chr3_1:51780321-51780340 | Msa0361380:intron | 35.0% | |
| ! | ATGCCGTTTGAATATATGGT+TGG | + | chr3_1:51780391-51780410 | None:intergenic | 35.0% |
| TTTCTCATCTAATAGTTCCG+AGG | - | chr3_1:51780453-51780472 | Msa0361380:intron | 35.0% | |
| GGTAGTACTAATGTGAGAAT+AGG | - | chr3_1:51780683-51780702 | Msa0361380:intron | 35.0% | |
| TCATGTCTACTTTAGACAGA+GGG | + | chr3_1:51780777-51780796 | None:intergenic | 35.0% | |
| ATCATGTCTACTTTAGACAG+AGG | + | chr3_1:51780778-51780797 | None:intergenic | 35.0% | |
| ! | TTTCTTTTTGCAGATGGTCA+CGG | + | chr3_1:51781038-51781057 | None:intergenic | 35.0% |
| ATTATGAACATCCAGTTAGG+TGG | + | chr3_1:51781180-51781199 | None:intergenic | 35.0% | |
| TACTGATCGGAAAGCTAAGA+CGG | + | chr3_1:51776014-51776033 | None:intergenic | 40.0% | |
| ! | GCGAATCATAGAAATGGGTT+TGG | + | chr3_1:51776113-51776132 | None:intergenic | 40.0% |
| GAGTTGGCGAATCATAGAAA+TGG | + | chr3_1:51776119-51776138 | None:intergenic | 40.0% | |
| GAGCTTTCTCAACGATTTCT+TGG | + | chr3_1:51776180-51776199 | None:intergenic | 40.0% | |
| TATGAAACACAGACACTCCT+CGG | - | chr3_1:51776289-51776308 | Msa0361380:intron | 40.0% | |
| ACGAAAAACTTGCATGCATG+AGG | - | chr3_1:51776625-51776644 | Msa0361380:intron | 40.0% | |
| GCACGAACATTTCTGATTGA+AGG | - | chr3_1:51776664-51776683 | Msa0361380:intron | 40.0% | |
| GTCACTAATGGAAGTGATGA+TGG | - | chr3_1:51776812-51776831 | Msa0361380:intron | 40.0% | |
| ATATCCAGTGGCACTTCATT+GGG | - | chr3_1:51777088-51777107 | Msa0361380:intron | 40.0% | |
| CTAAGAGCTACTGGTAATAC+TGG | + | chr3_1:51777739-51777758 | None:intergenic | 40.0% | |
| ! | TTCCCAGGTTTGAAACCATA+CGG | + | chr3_1:51778018-51778037 | None:intergenic | 40.0% |
| ! | AAGAAATCGTCTGAGGGTTT+TGG | - | chr3_1:51778036-51778055 | Msa0361380:intron | 40.0% |
| GAACATACATTCTTCTCCAC+TGG | + | chr3_1:51778074-51778093 | None:intergenic | 40.0% | |
| TTGGATCCCATATGTGAATG+TGG | - | chr3_1:51778191-51778210 | Msa0361380:intron | 40.0% | |
| TGGATCCCATATGTGAATGT+GGG | - | chr3_1:51778192-51778211 | Msa0361380:intron | 40.0% | |
| GGGAATTAACTAATGGCCTT+TGG | + | chr3_1:51778219-51778238 | None:intergenic | 40.0% | |
| GGCTTGAGGGAATTAACTAA+TGG | + | chr3_1:51778226-51778245 | None:intergenic | 40.0% | |
| ATTCCCTCAAGCCTATTATG+TGG | - | chr3_1:51778233-51778252 | Msa0361380:intron | 40.0% | |
| TTCCCTCAAGCCTATTATGT+GGG | - | chr3_1:51778234-51778253 | Msa0361380:intron | 40.0% | |
| GCTAGTAAAATTGAGGAAGG+AGG | - | chr3_1:51778264-51778283 | Msa0361380:intron | 40.0% | |
| GCTCTTAGAACTGTAAAGGT+TGG | - | chr3_1:51778383-51778402 | Msa0361380:intron | 40.0% | |
| !! | TTTTTGAGGAGCAATAGCTC+TGG | - | chr3_1:51778425-51778444 | Msa0361380:intron | 40.0% |
| !! | TTTTGAGGAGCAATAGCTCT+GGG | - | chr3_1:51778426-51778445 | Msa0361380:intron | 40.0% |
| AGATACGCAGAGTATGTGAT+AGG | + | chr3_1:51778529-51778548 | None:intergenic | 40.0% | |
| GTCTAGCAAAAAAAGAGAGG+TGG | + | chr3_1:51778719-51778738 | None:intergenic | 40.0% | |
| !! | AGGAGTTTTAACCAAGAGGT+CGG | + | chr3_1:51778789-51778808 | None:intergenic | 40.0% |
| !! | CTAACTTTGGAATAAGAGGG+GGG | + | chr3_1:51778863-51778882 | None:intergenic | 40.0% |
| ACTATTACCCGAAAGTTCTG+CGG | + | chr3_1:51779247-51779266 | None:intergenic | 40.0% | |
| TGTAGACCCTATCAAATTGC+AGG | - | chr3_1:51779444-51779463 | Msa0361380:intron | 40.0% | |
| CTTCAGTCCTGCAATTTGAT+AGG | + | chr3_1:51779454-51779473 | None:intergenic | 40.0% | |
| ! | AGTTTGCAAGGCACTTGAAA+TGG | - | chr3_1:51779472-51779491 | Msa0361380:intron | 40.0% |
| GAGCAATGTGAACTGTCAAT+GGG | - | chr3_1:51779500-51779519 | Msa0361380:intron | 40.0% | |
| ACTGACACGTTCTCTTTCTA+AGG | - | chr3_1:51779759-51779778 | Msa0361380:intron | 40.0% | |
| GTTATCTCATGGTAGATCAG+TGG | - | chr3_1:51779793-51779812 | Msa0361380:intron | 40.0% | |
| !!! | GCCTTGTTTTATGTAGCTTG+TGG | - | chr3_1:51779898-51779917 | Msa0361380:intron | 40.0% |
| ACGTTCAGTGGATGATTAAC+GGG | - | chr3_1:51780322-51780341 | Msa0361380:intron | 40.0% | |
| ! | GGTTGGTTACATTAAGTGGA+TGG | + | chr3_1:51780374-51780393 | None:intergenic | 40.0% |
| TCATCTAATAGTTCCGAGGT+AGG | - | chr3_1:51780457-51780476 | Msa0361380:intron | 40.0% | |
| TCCTTAATCATCTCCTACCT+CGG | + | chr3_1:51780473-51780492 | None:intergenic | 40.0% | |
| TGACTCATGACAGAACATCA+TGG | - | chr3_1:51780543-51780562 | Msa0361380:intron | 40.0% | |
| ! | CTTGCCTTTTCAGATCGAAT+CGG | - | chr3_1:51780661-51780680 | Msa0361380:intron | 40.0% |
| ! | TTGCCTTTTCAGATCGAATC+GGG | - | chr3_1:51780662-51780681 | Msa0361380:intron | 40.0% |
| TATGGCACAGATCTCCTAAA+TGG | - | chr3_1:51780803-51780822 | Msa0361380:intron | 40.0% | |
| GAATGCTTGTTCATGCTACT+TGG | - | chr3_1:51780951-51780970 | Msa0361380:CDS | 40.0% | |
| ! | TGTTCATGCTACTTGGAAAG+AGG | - | chr3_1:51780958-51780977 | Msa0361380:CDS | 40.0% |
| ! | GTTCATGCTACTTGGAAAGA+GGG | - | chr3_1:51780959-51780978 | Msa0361380:CDS | 40.0% |
| AGATGGTCACGGTATAATGA+TGG | + | chr3_1:51781027-51781046 | None:intergenic | 40.0% | |
| ATCACTGGAGATGTCATTGG+TGG | + | chr3_1:51775977-51775996 | None:intergenic | 45.0% | |
| ACCAATGACATCTCCAGTGA+TGG | - | chr3_1:51775976-51775995 | Msa0361380:three_prime_UTR | 45.0% | |
| AATGACATCTCCAGTGATGG+CGG | - | chr3_1:51775979-51775998 | Msa0361380:three_prime_UTR | 45.0% | |
| TATGACCTGCGTCATAGAGT+TGG | + | chr3_1:51776135-51776154 | None:intergenic | 45.0% | |
| ACGCAGGTCATAGAGTCTTT+GGG | - | chr3_1:51776143-51776162 | Msa0361380:three_prime_UTR | 45.0% | |
| AATCGTTGAGAAAGCTCCTC+AGG | - | chr3_1:51776183-51776202 | Msa0361380:intron | 45.0% | |
| ! | TTTCTGATTGAAGGTGTGCC+TGG | - | chr3_1:51776673-51776692 | Msa0361380:intron | 45.0% |
| TGACACGTGTGTCAAAAACC+AGG | + | chr3_1:51776694-51776713 | None:intergenic | 45.0% | |
| !! | ACATGAGTTGGTGTTGTGTC+AGG | + | chr3_1:51776720-51776739 | None:intergenic | 45.0% |
| CAACGTGTCAGTGTCAAGTT+CGG | - | chr3_1:51776780-51776799 | Msa0361380:intron | 45.0% | |
| ! | AAGTGCCACTGGATATCTTG+CGG | + | chr3_1:51777084-51777103 | None:intergenic | 45.0% |
| GATATCCAGTGGCACTTCAT+TGG | - | chr3_1:51777087-51777106 | Msa0361380:intron | 45.0% | |
| !! | GGGCACGTCATTGTTTCTAT+AGG | + | chr3_1:51777347-51777366 | None:intergenic | 45.0% |
| !! | TCTAGACAGTTCTAAGTGGC+CGG | - | chr3_1:51777476-51777495 | Msa0361380:intron | 45.0% |
| !! | GGCCGGGATAAACTTGTTTT+TGG | - | chr3_1:51777493-51777512 | Msa0361380:intron | 45.0% |
| TGTAGGCGGAGTTCCAAATT+TGG | - | chr3_1:51777670-51777689 | Msa0361380:intron | 45.0% | |
| TCCAAATTTGGCCATGGTTG+AGG | - | chr3_1:51777682-51777701 | Msa0361380:intron | 45.0% | |
| CCAAATTTGGCCATGGTTGA+GGG | - | chr3_1:51777683-51777702 | Msa0361380:intron | 45.0% | |
| CTTGTACTTCTGTAACTGGC+AGG | - | chr3_1:51777976-51777995 | Msa0361380:intron | 45.0% | |
| GGCAAATAACCTTGACCGTA+TGG | - | chr3_1:51778000-51778019 | Msa0361380:intron | 45.0% | |
| ! | GGTTTGAAACCATACGGTCA+AGG | + | chr3_1:51778012-51778031 | None:intergenic | 45.0% |
| TGACCGTATGGTTTCAAACC+TGG | - | chr3_1:51778012-51778031 | Msa0361380:intron | 45.0% | |
| GACCGTATGGTTTCAAACCT+GGG | - | chr3_1:51778013-51778032 | Msa0361380:intron | 45.0% | |
| TTGGTGCAAGTAAACACCAG+TGG | - | chr3_1:51778055-51778074 | Msa0361380:intron | 45.0% | |
| CGAAGCTGAGCCATACTATT+TGG | - | chr3_1:51778172-51778191 | Msa0361380:intron | 45.0% | |
| TTGGGCCCACATTCACATAT+GGG | + | chr3_1:51778200-51778219 | None:intergenic | 45.0% | |
| TTTGGGCCCACATTCACATA+TGG | + | chr3_1:51778201-51778220 | None:intergenic | 45.0% | |
| ATATGTGAATGTGGGCCCAA+AGG | - | chr3_1:51778200-51778219 | Msa0361380:intron | 45.0% | |
| TCCCTCAAGCCTATTATGTG+GGG | - | chr3_1:51778235-51778254 | Msa0361380:intron | 45.0% | |
| ACCCCACATAATAGGCTTGA+GGG | + | chr3_1:51778239-51778258 | None:intergenic | 45.0% | |
| AGCATCACACCCCACATAAT+AGG | + | chr3_1:51778247-51778266 | None:intergenic | 45.0% | |
| ! | TTTGAGGAGCAATAGCTCTG+GGG | - | chr3_1:51778427-51778446 | Msa0361380:intron | 45.0% |
| !! | GGAGTTTTAACCAAGAGGTC+GGG | + | chr3_1:51778788-51778807 | None:intergenic | 45.0% |
| GATGAGCTGAGCAATGTTGA+AGG | + | chr3_1:51778809-51778828 | None:intergenic | 45.0% | |
| GGAAGGATCAACACCTGATT+TGG | + | chr3_1:51779128-51779147 | None:intergenic | 45.0% | |
| GCAAGATCAACACAATCGGA+AGG | + | chr3_1:51779145-51779164 | None:intergenic | 45.0% | |
| GAATCATTTCGTGGGTTTCG+TGG | - | chr3_1:51779354-51779373 | Msa0361380:intron | 45.0% | |
| GACATTACAGTTCAGCATCG+AGG | + | chr3_1:51779394-51779413 | None:intergenic | 45.0% | |
| TTGCAGGACTGAAGTTTGCA+AGG | - | chr3_1:51779460-51779479 | Msa0361380:intron | 45.0% | |
| GGAGCAATGTGAACTGTCAA+TGG | - | chr3_1:51779499-51779518 | Msa0361380:intron | 45.0% | |
| !!! | GTCTGGCGATTTTGAGTTAG+CGG | - | chr3_1:51779526-51779545 | Msa0361380:intron | 45.0% |
| TCCGAGGTAGGAGATGATTA+AGG | - | chr3_1:51780469-51780488 | Msa0361380:intron | 45.0% | |
| ! | CTACCCGATTCGATCTGAAA+AGG | + | chr3_1:51780668-51780687 | None:intergenic | 45.0% |
| GCCATCACTGGAGATGTCAT+TGG | + | chr3_1:51775980-51775999 | None:intergenic | 50.0% | |
| ! | GGACACGGAGCATTACTGAT+CGG | + | chr3_1:51776027-51776046 | None:intergenic | 50.0% |
| ! | TTTCCGCTGCTTGTTGGACA+CGG | + | chr3_1:51776042-51776061 | None:intergenic | 50.0% |
| CAACAAGCAGCGGAAAGATC+CGG | - | chr3_1:51776046-51776065 | Msa0361380:three_prime_UTR | 50.0% | |
| AACTCGATCGGGTTTGGATC+CGG | + | chr3_1:51776068-51776087 | None:intergenic | 50.0% | |
| GATCCAAACCCGATCGAGTT+CGG | - | chr3_1:51776068-51776087 | Msa0361380:three_prime_UTR | 50.0% | |
| ATCCAAACCCGATCGAGTTC+GGG | - | chr3_1:51776069-51776088 | Msa0361380:three_prime_UTR | 50.0% | |
| ATTCGCCAACTCTATGACGC+AGG | - | chr3_1:51776127-51776146 | Msa0361380:three_prime_UTR | 50.0% | |
| GACGCAGGTCATAGAGTCTT+TGG | - | chr3_1:51776142-51776161 | Msa0361380:three_prime_UTR | 50.0% | |
| CGCAGGTCATAGAGTCTTTG+GGG | - | chr3_1:51776144-51776163 | Msa0361380:three_prime_UTR | 50.0% | |
| ACACAGACACTCCTCGGATT+AGG | - | chr3_1:51776295-51776314 | Msa0361380:intron | 50.0% | |
| GAAGCACAGAGACACAGACA+CGG | + | chr3_1:51776426-51776445 | None:intergenic | 50.0% | |
| TGACACTGACACGTTGACAC+CGG | + | chr3_1:51776776-51776795 | None:intergenic | 50.0% | |
| CGGTGTGCGTATGTCACTAA+TGG | - | chr3_1:51776800-51776819 | Msa0361380:intron | 50.0% | |
| AGCTTCCGCAAGATATCCAG+TGG | - | chr3_1:51777076-51777095 | Msa0361380:intron | 50.0% | |
| ! | AATGCCCAATGAAGTGCCAC+TGG | + | chr3_1:51777095-51777114 | None:intergenic | 50.0% |
| !! | CTAGACAGTTCTAAGTGGCC+GGG | - | chr3_1:51777477-51777496 | Msa0361380:intron | 50.0% |
| CGGAGTTCCAAATTTGGCCA+TGG | - | chr3_1:51777676-51777695 | Msa0361380:intron | 50.0% | |
| CCCTCAACCATGGCCAAATT+TGG | + | chr3_1:51777686-51777705 | None:intergenic | 50.0% | |
| ATTGTCCACTCCCTCAACCA+TGG | + | chr3_1:51777696-51777715 | None:intergenic | 50.0% | |
| TGAGGGAGTGGACAATCAGA+AGG | - | chr3_1:51777700-51777719 | Msa0361380:intron | 50.0% | |
| GTACTTCTGTAACTGGCAGG+TGG | - | chr3_1:51777979-51777998 | Msa0361380:intron | 50.0% | |
| ACCTGGGAAGAAATCGTCTG+AGG | - | chr3_1:51778029-51778048 | Msa0361380:intron | 50.0% | |
| CCTGGGAAGAAATCGTCTGA+GGG | - | chr3_1:51778030-51778049 | Msa0361380:intron | 50.0% | |
| ! | GCGAGGTTTTCGTACATCCT+CGG | - | chr3_1:51778146-51778165 | Msa0361380:intron | 50.0% |
| ! | CGAGGTTTTCGTACATCCTC+GGG | - | chr3_1:51778147-51778166 | Msa0361380:intron | 50.0% |
| CACCCCACATAATAGGCTTG+AGG | + | chr3_1:51778240-51778259 | None:intergenic | 50.0% | |
| ATCAACCGAGCTGCCTACTT+AGG | - | chr3_1:51778826-51778845 | Msa0361380:intron | 50.0% | |
| TGAGTCCTAAGTAGGCAGCT+CGG | + | chr3_1:51778834-51778853 | None:intergenic | 50.0% | |
| ! | GGAAGGTGTGAGTCCTAAGT+AGG | + | chr3_1:51778842-51778861 | None:intergenic | 50.0% |
| !! | CTTTGGAATAAGAGGGGGGA+AGG | + | chr3_1:51778859-51778878 | None:intergenic | 50.0% |
| TGCGGAGTTGAGGTATAGTC+TGG | + | chr3_1:51779229-51779248 | None:intergenic | 50.0% | |
| CCTCAACTCCGCAGAACTTT+CGG | - | chr3_1:51779236-51779255 | Msa0361380:intron | 50.0% | |
| CTCAACTCCGCAGAACTTTC+GGG | - | chr3_1:51779237-51779256 | Msa0361380:intron | 50.0% | |
| ! | CAAGGCACTTGAAATGGACG+AGG | - | chr3_1:51779478-51779497 | Msa0361380:intron | 50.0% |
| GAACTGTCAATGGGCATGTC+TGG | - | chr3_1:51779509-51779528 | Msa0361380:intron | 50.0% | |
| ! | TGCTACTTGGAAAGAGGGAG+AGG | - | chr3_1:51780964-51780983 | Msa0361380:CDS | 50.0% |
| GCTACTTGGAAAGAGGGAGA+GGG | - | chr3_1:51780965-51780984 | Msa0361380:CDS | 50.0% | |
| GGTGTGTCTGTGTGTTGAGG+TGG | + | chr3_1:51775956-51775975 | None:intergenic | 55.0% | |
| GGTGGTGTGTCTGTGTGTTG+AGG | + | chr3_1:51775959-51775978 | None:intergenic | 55.0% | |
| CGGATCTTTCCGCTGCTTGT+TGG | + | chr3_1:51776048-51776067 | None:intergenic | 55.0% | |
| TGCAACGACCCGAACTCGAT+CGG | + | chr3_1:51776080-51776099 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCA+CGG | - | chr3_1:51776305-51776324 | Msa0361380:three_prime_UTR | 55.0% |
| GATTAGGCGTGTCACGGTGT+CGG | - | chr3_1:51776311-51776330 | Msa0361380:three_prime_UTR | 55.0% | |
| TTTGGCCATGGTTGAGGGAG+TGG | - | chr3_1:51777688-51777707 | Msa0361380:intron | 55.0% | |
| CCCTCAGACGATTTCTTCCC+AGG | + | chr3_1:51778033-51778052 | None:intergenic | 55.0% | |
| GGTTAGAACTCCCGACCTCT+TGG | - | chr3_1:51778775-51778794 | Msa0361380:intron | 55.0% | |
| CCGAAAGTTCTGCGGAGTTG+AGG | + | chr3_1:51779239-51779258 | None:intergenic | 55.0% | |
| GCTCCGTGTCCAACAAGCAG+CGG | - | chr3_1:51776036-51776055 | Msa0361380:three_prime_UTR | 60.0% | |
| GACCCGAACTCGATCGGGTT+TGG | + | chr3_1:51776074-51776093 | None:intergenic | 60.0% | |
| GCAACGACCCGAACTCGATC+GGG | + | chr3_1:51776079-51776098 | None:intergenic | 60.0% | |
| ACCGTGACACGCCTAATCCG+AGG | + | chr3_1:51776309-51776328 | None:intergenic | 60.0% | |
| GCAGCAGCTTCCGCCATCAC+TGG | + | chr3_1:51775992-51776011 | None:intergenic | 65.0% | |
| ATGGCTCAGCTTCGTGCCCG+AGG | + | chr3_1:51778166-51778185 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 51775880 | 51781243 | 51775880 | ID=Msa0361380;Name=Msa0361380 |
| chr3_1 | mRNA | 51775880 | 51781243 | 51775880 | ID=Msa0361380-mRNA-1;Parent=Msa0361380;Name=Msa0361380-mRNA-1;_AED=0.12;_eAED=0.12;_QI=100|0.85|0.75|1|0.71|0.62|8|368|237 |
| chr3_1 | exon | 51775880 | 51776171 | 51775880 | ID=Msa0361380-mRNA-1:exon:9258;Parent=Msa0361380-mRNA-1 |
| chr3_1 | exon | 51776299 | 51776449 | 51776299 | ID=Msa0361380-mRNA-1:exon:9257;Parent=Msa0361380-mRNA-1 |
| chr3_1 | exon | 51777576 | 51777674 | 51777576 | ID=Msa0361380-mRNA-1:exon:9256;Parent=Msa0361380-mRNA-1 |
| chr3_1 | exon | 51777865 | 51777989 | 51777865 | ID=Msa0361380-mRNA-1:exon:9255;Parent=Msa0361380-mRNA-1 |
| chr3_1 | exon | 51779050 | 51779125 | 51779050 | ID=Msa0361380-mRNA-1:exon:9254;Parent=Msa0361380-mRNA-1 |
| chr3_1 | exon | 51779402 | 51779448 | 51779402 | ID=Msa0361380-mRNA-1:exon:9253;Parent=Msa0361380-mRNA-1 |
| chr3_1 | exon | 51779979 | 51780045 | 51779979 | ID=Msa0361380-mRNA-1:exon:9252;Parent=Msa0361380-mRNA-1 |
| chr3_1 | exon | 51780919 | 51781243 | 51780919 | ID=Msa0361380-mRNA-1:exon:9251;Parent=Msa0361380-mRNA-1 |
| chr3_1 | five_prime_UTR | 51781144 | 51781243 | 51781144 | ID=Msa0361380-mRNA-1:five_prime_utr;Parent=Msa0361380-mRNA-1 |
| chr3_1 | CDS | 51780919 | 51781143 | 51780919 | ID=Msa0361380-mRNA-1:cds;Parent=Msa0361380-mRNA-1 |
| chr3_1 | CDS | 51779979 | 51780045 | 51779979 | ID=Msa0361380-mRNA-1:cds;Parent=Msa0361380-mRNA-1 |
| chr3_1 | CDS | 51779402 | 51779448 | 51779402 | ID=Msa0361380-mRNA-1:cds;Parent=Msa0361380-mRNA-1 |
| chr3_1 | CDS | 51779050 | 51779125 | 51779050 | ID=Msa0361380-mRNA-1:cds;Parent=Msa0361380-mRNA-1 |
| chr3_1 | CDS | 51777865 | 51777989 | 51777865 | ID=Msa0361380-mRNA-1:cds;Parent=Msa0361380-mRNA-1 |
| chr3_1 | CDS | 51777576 | 51777674 | 51777576 | ID=Msa0361380-mRNA-1:cds;Parent=Msa0361380-mRNA-1 |
| chr3_1 | CDS | 51776375 | 51776449 | 51776375 | ID=Msa0361380-mRNA-1:cds;Parent=Msa0361380-mRNA-1 |
| chr3_1 | three_prime_UTR | 51776299 | 51776374 | 51776299 | ID=Msa0361380-mRNA-1:three_prime_utr;Parent=Msa0361380-mRNA-1 |
| chr3_1 | three_prime_UTR | 51775880 | 51776171 | 51775880 | ID=Msa0361380-mRNA-1:three_prime_utr;Parent=Msa0361380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
