AlfalfaGEDB | Msa0088670

M. sativa cultivar zhongmu-4 / Msa0088670

KEGG: K20115
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564
PFAM: PF03618.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088670	XP_013469890.1	95.844	385	13	1	1	385	1	382	0.0	758

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088670	sp\|O49562\|PDRP1_ARATH	59.950	397	133	8	4	385	18	403	9.08e-160	457

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088670	A0A072VR94	95.844	385	13	1	1	385	1	382	0.0	758

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001040	Msa0088670	0.827103	1.881966e-54	-8.615850e-47
Msa0003340	Msa0088670	0.825592	4.310619e-54	-8.615850e-47
Msa0005630	Msa0088670	0.808654	2.784403e-50	-8.615850e-47
Msa0007570	Msa0088670	0.838564	2.668142e-57	-8.615850e-47
Msa0007810	Msa0088670	0.820551	6.460347e-53	-8.615850e-47
Msa0011060	Msa0088670	0.812905	3.350856e-51	-8.615850e-47
Msa0011100	Msa0088670	0.818359	2.042755e-52	-8.615850e-47
Msa0015220	Msa0088670	0.814193	1.744717e-51	-8.615850e-47
Msa0016380	Msa0088670	0.826918	2.083966e-54	-8.615850e-47
Msa0021240	Msa0088670	0.834388	3.085633e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088670	MtrunA17_Chr1g0206141	95.844	385	13	1	1	385	1	382	0.0	758

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0088670	AT4G21210.1	59.950	397	133	8	4	385	18	403	9.23e-161	457
Msa0088670	AT3G01200.1	62.466	365	122	6	29	385	20	377	2.76e-148	425
Msa0088670	AT4G21210.2	55.668	397	123	9	4	385	18	376	7.44e-141	405

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Find 124 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGGGCTAAAACTTT+GGG	0.383297	1_2:+69765084	Msa0088670:CDS
AAAACATATGAGTACAAACA+GGG	0.728365	1_2:-69762296	None:intergenic
AAACTGCAGCCGTTGTATTG+AGG	0.546382	1_2:+69765381	Msa0088670:CDS
AACCCTGTCTGGCCCGTTAT+TGG	0.248173	1_2:+69765192	Msa0088670:CDS
AACCGGAGGTGGAGAGTTGT+TGG	0.438244	1_2:-69762115	None:intergenic
AACTTTGATGCTTTACAATA+TGG	0.236909	1_2:-69765487	None:intergenic
AAGGCTGATATTGTTCTTAC+CGG	0.326597	1_2:+69764889	Msa0088670:CDS
AATACGTGCCGGTCGAAAAT+TGG	0.320881	1_2:+69762059	Msa0088670:CDS
AATAGACAAAGGTGTCTTCC+CGG	0.408718	1_2:-69764923	None:intergenic
AATCCTACGAAAGTAATCAT+CGG	0.619260	1_2:-69764809	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGGACATAATCGTGAAAT+TGG	-	chr1_2:69761910-69761929	None:intergenic	30.0%
GAAAACATATGAGTACAAAC+AGG	-	chr1_2:69762300-69762319	None:intergenic	30.0%
CAAAGTGGATAAAGAATGAA+GGG	-	chr1_2:69762340-69762359	None:intergenic	30.0%
GAGTTATAAAGGGAAAAAAG+TGG	+	chr1_2:69762825-69762844	Msa0088670:intron	30.0%
GGATGATCTTAATATATAGG+AGG	-	chr1_2:69763110-69763129	None:intergenic	30.0%
CCAGTCCAAAAATATGAAAA+AGG	-	chr1_2:69763143-69763162	None:intergenic	30.0%
TGATGATAATTCCACATCAT+CGG	-	chr1_2:69763208-69763227	None:intergenic	30.0%
AAAAAAAAAATGGGCCATTG+AGG	+	chr1_2:69763576-69763595	Msa0088670:intron	30.0%
AATTGACCAAAGAGATTGAA+GGG	-	chr1_2:69763779-69763798	None:intergenic	30.0%
TTCAATCTCTTTGGTCAATT+GGG	+	chr1_2:69763779-69763798	Msa0088670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	69761841	69765707	69761841	ID=Msa0088670;Name=Msa0088670
chr1_2	mRNA	69761841	69765707	69761841	ID=Msa0088670-mRNA-1;Parent=Msa0088670;Name=Msa0088670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63\|1\|1\|1\|1\|1\|3\|247\|385
chr1_2	exon	69761841	69762323	69761841	ID=Msa0088670-mRNA-1:exon:23982;Parent=Msa0088670-mRNA-1
chr1_2	exon	69764580	69765213	69764580	ID=Msa0088670-mRNA-1:exon:23983;Parent=Msa0088670-mRNA-1
chr1_2	exon	69765357	69765707	69765357	ID=Msa0088670-mRNA-1:exon:23984;Parent=Msa0088670-mRNA-1
chr1_2	five_prime_UTR	69761841	69761903	69761841	ID=Msa0088670-mRNA-1:five_prime_utr;Parent=Msa0088670-mRNA-1
chr1_2	CDS	69761904	69762323	69761904	ID=Msa0088670-mRNA-1:cds;Parent=Msa0088670-mRNA-1
chr1_2	CDS	69764580	69765213	69764580	ID=Msa0088670-mRNA-1:cds;Parent=Msa0088670-mRNA-1
chr1_2	CDS	69765357	69765460	69765357	ID=Msa0088670-mRNA-1:cds;Parent=Msa0088670-mRNA-1
chr1_2	three_prime_UTR	69765461	69765707	69765461	ID=Msa0088670-mRNA-1:three_prime_utr;Parent=Msa0088670-mRNA-1

Gene Sequence

>Msa0088670

ATGCCAATTTCACGATTATGTCCAAACACACATCCACTTCTACAAATCAAAGCATGCAACCGCAACAACAACAACAACAACGACACAGGATCGAAGTCAGTTACAGGAAAACCCAAGGTGAGTCCCCAGCTGAACCGGTGGTCCAGGGCTCGTGCAATACGTGCCGGTCGAAAATTGGACCGGTCTAGTCCTCGAACCCAGACCATAGAATCCAACAACTCTCCACCTCCGGTTCCTTTCGCGGTCGACCTGGATGACACCGTCAGTGAAGACGGGTCAGAGTTCAAGGCTAAGTCAATTTATATTGTCTCTGATGGAACCGGTTGGACCGCTGAACACTGTGTTAATGCTGCTTTGGGTCAGTTTGATTATTGCTTGGTTGATCGTGGTTGCCCTGTTTGTACTCATATGTTTTCTGGGATTGATGATGTAGAGAGGTTATTGGAGATAATAAAGCAAGCAGTGAAGGAAGATGCATTGGTTGTGTATACTTTAGCCGATTCTTCATTTTCTTCAGCAGCTGAGAAGGCCTGCAAATTATGGGGTGTGCCTTCTACTAATGTACTAGGACCCATTACAGAGGCCATTGCTTCTCATTTGGGTGTGTCTCCTTCTGGCCTTCCTCGTGGTGCTTCGGGCATTCCACTCTCCGATGATTACTTTCGTAGGATTGAAGCTATTGAATTCACTATCAAGCAAGATGATGGGGCATCTCCACAGAATCTTGCCAAGGCTGATATTGTTCTTACCGGGGTTTCCCGAACCGGGAAGACACCTTTGTCTATTTATCTTGCACAGAAAGGATATAAGGTCGCCAACGTACCGATTGTAATGGGTGTGGAAATGCCTAGGACTCTCTTTCAGGTTGATCCAAAGAAGGTTTTTGGCTTGACTATAAATCATGGTGTTTTACAGGACATTAGAAAAACAAGGGCTAAAACTTTGGGATTTAGTTCAGAATCACGAACTAATTATTCGGAGATGGATTATATTCGAGAGGAACTTGAATTTGCAGGAAGGCTCTTTGCTCAAAACCCTGTCTGGCCCGTTATTGATGTGACTGCTAAAGCGATAGAAGAAACTGCAGCCGTTGTATTGAGGCTTTTCCACGACCGCAAGCATAAGTACACAATGTCTAGCATCTCAAAACGCTATTAG

Protein sequence

>Msa0088670

MPISRLCPNTHPLLQIKACNRNNNNNNDTGSKSVTGKPKVSPQLNRWSRARAIRAGRKLDRSSPRTQTIESNNSPPPVPFAVDLDDTVSEDGSEFKAKSIYIVSDGTGWTAEHCVNAALGQFDYCLVDRGCPVCTHMFSGIDDVERLLEIIKQAVKEDALVVYTLADSSFSSAAEKACKLWGVPSTNVLGPITEAIASHLGVSPSGLPRGASGIPLSDDYFRRIEAIEFTIKQDDGASPQNLAKADIVLTGVSRTGKTPLSIYLAQKGYKVANVPIVMGVEMPRTLFQVDPKKVFGLTINHGVLQDIRKTRAKTLGFSSESRTNYSEMDYIREELEFAGRLFAQNPVWPVIDVTAKAIEETAAVVLRLFHDRKHKYTMSSISKRY*