AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0088670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088670 MtrunA17_Chr1g0206141 95.844 385 13 1 1 385 1 382 0.0 758
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088670 AT4G21210.1 59.950 397 133 8 4 385 18 403 9.23e-161 457
Msa0088670 AT3G01200.1 62.466 365 122 6 29 385 20 377 2.76e-148 425
Msa0088670 AT4G21210.2 55.668 397 123 9 4 385 18 376 7.44e-141 405

Find 124 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATCTCAAAACGCTATT+AGG 0.180944 1_2:+69765439 Msa0088670:CDS
CTGAGAAGGCCTGCAAATTA+TGG 0.189713 1_2:+69764680 Msa0088670:CDS
AATGCCTAGGACTCTCTTTC+AGG 0.211691 1_2:+69765002 Msa0088670:CDS
CATTTGGGTGTGTCTCCTTC+TGG 0.228537 1_2:+69764754 Msa0088670:CDS
ATTCTACGTTATATATATTA+TGG 0.229558 1_2:+69765613 Msa0088670:three_prime_UTR
AACTTTGATGCTTTACAATA+TGG 0.236909 1_2:-69765487 None:intergenic
AACCCTGTCTGGCCCGTTAT+TGG 0.248173 1_2:+69765192 Msa0088670:CDS
TGATGATGTAGAGAGGTTAT+TGG 0.259176 1_2:+69764582 Msa0088670:CDS
GGCCTTCCTCGTGGTGCTTC+GGG 0.269673 1_2:+69764775 Msa0088670:CDS
AGAGGCCATTGCTTCTCATT+TGG 0.277345 1_2:+69764738 Msa0088670:CDS
CCCTGGACCACCGGTTCAGC+TGG 0.278178 1_2:-69762029 None:intergenic
TGGCCTTCCTCGTGGTGCTT+CGG 0.279151 1_2:+69764774 Msa0088670:CDS
GAGGCCATTGCTTCTCATTT+GGG 0.292504 1_2:+69764739 Msa0088670:CDS
CGAGAGGAACTTGAATTTGC+AGG 0.302596 1_2:+69765153 Msa0088670:CDS
TTTGGACATAATCGTGAAAT+TGG 0.309134 1_2:-69761907 None:intergenic
AATACGTGCCGGTCGAAAAT+TGG 0.320881 1_2:+69762059 Msa0088670:CDS
AAGGCTGATATTGTTCTTAC+CGG 0.326597 1_2:+69764889 Msa0088670:CDS
TGGAGAGTTGTTGGATTCTA+TGG 0.333606 1_2:-69762106 None:intergenic
AGTTGTTGGATTCTATGGTC+TGG 0.342902 1_2:-69762101 None:intergenic
ACACTGTGTTAATGCTGCTT+TGG 0.350893 1_2:+69762239 Msa0088670:CDS
CCCAGCTGAACCGGTGGTCC+AGG 0.354359 1_2:+69762028 Msa0088670:CDS
TTCAGCTGGGGACTCACCTT+GGG 0.380039 1_2:-69762015 None:intergenic
GTTGTTGGATTCTATGGTCT+GGG 0.380440 1_2:-69762100 None:intergenic
CTTACCGGGGTTTCCCGAAC+CGG 0.381722 1_2:+69764904 Msa0088670:CDS
AAAACAAGGGCTAAAACTTT+GGG 0.383297 1_2:+69765084 Msa0088670:CDS
TGAGAAGGCCTGCAAATTAT+GGG 0.385262 1_2:+69764681 Msa0088670:CDS
AGGTGAGTCCCCAGCTGAAC+CGG 0.390015 1_2:+69762019 Msa0088670:CDS
AGCATCTCAAAACGCTATTA+GGG 0.392814 1_2:+69765440 Msa0088670:CDS
TCTTGCACAGAAAGGATATA+AGG 0.396354 1_2:+69764948 Msa0088670:CDS
TTTAAACTAGTTACCAATAA+CGG 0.399335 1_2:-69765205 None:intergenic
AGAATCACGAACTAATTATT+CGG 0.401536 1_2:+69765116 Msa0088670:CDS
CACTGTGTTAATGCTGCTTT+GGG 0.405411 1_2:+69762240 Msa0088670:CDS
CAAAGGTGTCTTCCCGGTTC+GGG 0.406454 1_2:-69764917 None:intergenic
AATAGACAAAGGTGTCTTCC+CGG 0.408718 1_2:-69764923 None:intergenic
TCTTTGCTCAAAACCCTGTC+TGG 0.413483 1_2:+69765181 Msa0088670:CDS
TCCACCTCCGGTTCCTTTCG+CGG 0.415535 1_2:+69762125 Msa0088670:CDS
CTTTCAGGTTGATCCAAAGA+AGG 0.417408 1_2:+69765017 Msa0088670:CDS
GATTCTATGGTCTGGGTTCG+AGG 0.419326 1_2:-69762093 None:intergenic
TTAAACTAGTTACCAATAAC+GGG 0.420624 1_2:-69765204 None:intergenic
ACAAAGGTGTCTTCCCGGTT+CGG 0.421615 1_2:-69764918 None:intergenic
TATATTGTCTCTGATGGAAC+CGG 0.427728 1_2:+69762204 Msa0088670:CDS
AGGCACACCCCATAATTTGC+AGG 0.429143 1_2:-69764689 None:intergenic
TGTAGAAGTGGATGTGTGTT+TGG 0.429379 1_2:-69761925 None:intergenic
AGGTCGACCGCGAAAGGAAC+CGG 0.432748 1_2:-69762132 None:intergenic
AACCGGAGGTGGAGAGTTGT+TGG 0.438244 1_2:-69762115 None:intergenic
GGTTCCTTTCGCGGTCGACC+TGG 0.440238 1_2:+69762134 Msa0088670:CDS
GAAGCAATGGCCTCTGTAAT+GGG 0.440509 1_2:-69764730 None:intergenic
TGTACTTATGCTTGCGGTCG+TGG 0.443222 1_2:-69765409 None:intergenic
GCCAACGTACCGATTGTAAT+GGG 0.443904 1_2:+69764973 Msa0088670:CDS
TCAATTTATATTGTCTCTGA+TGG 0.444492 1_2:+69762198 Msa0088670:CDS
ACAGGATCGAAGTCAGTTAC+AGG 0.446068 1_2:+69761988 Msa0088670:CDS
GTTCAGCTGGGGACTCACCT+TGG 0.448291 1_2:-69762016 None:intergenic
TGAAGACGGGTCAGAGTTCA+AGG 0.449581 1_2:+69762170 Msa0088670:CDS
AGAAGCAATGGCCTCTGTAA+TGG 0.453238 1_2:-69764731 None:intergenic
TGCTGAAGAAAATGAAGAAT+CGG 0.455105 1_2:-69764656 None:intergenic
TTCACTATCAAGCAAGATGA+TGG 0.456113 1_2:+69764844 Msa0088670:CDS
GATAATAAAGCAAGCAGTGA+AGG 0.457050 1_2:+69764606 Msa0088670:CDS
TCTATTTATCTTGCACAGAA+AGG 0.471352 1_2:+69764940 Msa0088670:CDS
TTTGGCTTGACTATAAATCA+TGG 0.473507 1_2:+69765042 Msa0088670:CDS
AGGCTGATATTGTTCTTACC+GGG 0.473769 1_2:+69764890 Msa0088670:CDS
GAAAACATATGAGTACAAAC+AGG 0.474008 1_2:-69762297 None:intergenic
ACCGCGAAAGGAACCGGAGG+TGG 0.478788 1_2:-69762126 None:intergenic
ACAGTGTTCAGCGGTCCAAC+CGG 0.487559 1_2:-69762223 None:intergenic
TTACCAATAACGGGCCAGAC+AGG 0.490285 1_2:-69765195 None:intergenic
GGCACGTATTGCACGAGCCC+TGG 0.490898 1_2:-69762046 None:intergenic
GGTCCTAGTACATTAGTAGA+AGG 0.496207 1_2:-69764709 None:intergenic
CGCCAACGTACCGATTGTAA+TGG 0.502330 1_2:+69764972 Msa0088670:CDS
TCAACCTGAAAGAGAGTCCT+AGG 0.502593 1_2:-69765006 None:intergenic
GGGTCAGTTTGATTATTGCT+TGG 0.511262 1_2:+69762260 Msa0088670:CDS
CCTGGACCACCGGTTCAGCT+GGG 0.512697 1_2:-69762028 None:intergenic
TGCCCGAAGCACCACGAGGA+AGG 0.516356 1_2:-69764777 None:intergenic
CATGCTTTGATTTGTAGAAG+TGG 0.516416 1_2:-69761937 None:intergenic
ATTTCCACACCCATTACAAT+CGG 0.523246 1_2:-69764982 None:intergenic
CTTCACTGACGGTGTCATCC+AGG 0.526130 1_2:-69762152 None:intergenic
CTCTGACCCGTCTTCACTGA+CGG 0.526410 1_2:-69762163 None:intergenic
ACGAACTAATTATTCGGAGA+TGG 0.528392 1_2:+69765122 Msa0088670:CDS
GTGCCTTCTACTAATGTACT+AGG 0.528949 1_2:+69764706 Msa0088670:CDS
ATCCAACAACTCTCCACCTC+CGG 0.531155 1_2:+69762113 Msa0088670:CDS
TCATCCAGGTCGACCGCGAA+AGG 0.533115 1_2:-69762138 None:intergenic
CCAGCTGAACCGGTGGTCCA+GGG 0.533135 1_2:+69762029 Msa0088670:CDS
TTGCACGAGCCCTGGACCAC+CGG 0.533336 1_2:-69762038 None:intergenic
AGCAGTGAAGGAAGATGCAT+TGG 0.539636 1_2:+69764618 Msa0088670:CDS
GCACCACGAGGAAGGCCAGA+AGG 0.540325 1_2:-69764769 None:intergenic
AAACTGCAGCCGTTGTATTG+AGG 0.546382 1_2:+69765381 Msa0088670:CDS
GGTAAGAACAATATCAGCCT+TGG 0.556039 1_2:-69764887 None:intergenic
TCACTATCAAGCAAGATGAT+GGG 0.560687 1_2:+69764845 Msa0088670:CDS
TTACCGGGGTTTCCCGAACC+GGG 0.561422 1_2:+69764905 Msa0088670:CDS
GATGACACCGTCAGTGAAGA+CGG 0.562579 1_2:+69762156 Msa0088670:CDS
ACCCATTACAATCGGTACGT+TGG 0.563055 1_2:-69764974 None:intergenic
TCTCCGATGATTACTTTCGT+AGG 0.573677 1_2:+69764806 Msa0088670:CDS
TACCAATAACGGGCCAGACA+GGG 0.574592 1_2:-69765194 None:intergenic
AGGGCTCGTGCAATACGTGC+CGG 0.584604 1_2:+69762048 Msa0088670:CDS
CTGGACCACCGGTTCAGCTG+GGG 0.586413 1_2:-69762027 None:intergenic
AGTTTCAAAATTGATAGCAA+TGG 0.587513 1_2:-69765637 None:intergenic
TCAGCCTTGGCAAGATTCTG+TGG 0.588473 1_2:-69764874 None:intergenic
CGAAAGTAATCATCGGAGAG+TGG 0.593726 1_2:-69764802 None:intergenic
CACACCCAAATGAGAAGCAA+TGG 0.594750 1_2:-69764743 None:intergenic
ATGACACCGTCAGTGAAGAC+GGG 0.595160 1_2:+69762157 Msa0088670:CDS
CGTACCGATTGTAATGGGTG+TGG 0.597883 1_2:+69764978 Msa0088670:CDS
CACTATCAAGCAAGATGATG+GGG 0.598005 1_2:+69764846 Msa0088670:CDS
ATCTCCACAGAATCTTGCCA+AGG 0.605005 1_2:+69764870 Msa0088670:CDS
TCTGGGTTCGAGGACTAGAC+CGG 0.605618 1_2:-69762083 None:intergenic
GATTATTGCTTGGTTGATCG+TGG 0.606004 1_2:+69762270 Msa0088670:CDS
ACTAGATTGATGATGTAGAG+AGG 0.606048 1_2:+69764575 Msa0088670:intron
TGAGTCCCCAGCTGAACCGG+TGG 0.615425 1_2:+69762022 Msa0088670:CDS
AATCCTACGAAAGTAATCAT+CGG 0.619260 1_2:-69764809 None:intergenic
GGAGATGGATTATATTCGAG+AGG 0.620322 1_2:+69765137 Msa0088670:CDS
ACATTGTGTACTTATGCTTG+CGG 0.621650 1_2:-69765415 None:intergenic
GGCTGATATTGTTCTTACCG+GGG 0.633144 1_2:+69764891 Msa0088670:CDS
TAATGGGTGTGGAAATGCCT+AGG 0.639068 1_2:+69764989 Msa0088670:CDS
TGTGCAAGATAAATAGACAA+AGG 0.639412 1_2:-69764934 None:intergenic
CTTCCCGGTTCGGGAAACCC+CGG 0.642703 1_2:-69764908 None:intergenic
GTGCCGGTCGAAAATTGGAC+CGG 0.644141 1_2:+69762064 Msa0088670:CDS
GTCAGTTACAGGAAAACCCA+AGG 0.646536 1_2:+69761999 Msa0088670:CDS
AGCATTAACACAGTGTTCAG+CGG 0.649027 1_2:-69762232 None:intergenic
AGGAACTTGAATTTGCAGGA+AGG 0.656716 1_2:+69765157 Msa0088670:CDS
GAGAAGGCCTGCAAATTATG+GGG 0.658515 1_2:+69764682 Msa0088670:CDS
TCTCCTTCTGGCCTTCCTCG+TGG 0.666025 1_2:+69764766 Msa0088670:CDS
TTGTCTCTGATGGAACCGGT+TGG 0.666341 1_2:+69762208 Msa0088670:CDS
GTGGAAAAGCCTCAATACAA+CGG 0.674206 1_2:-69765390 None:intergenic
TCGACCGCGAAAGGAACCGG+AGG 0.689587 1_2:-69762129 None:intergenic
AAAACATATGAGTACAAACA+GGG 0.728365 1_2:-69762296 None:intergenic
GGAATGCCCGAAGCACCACG+AGG 0.754720 1_2:-69764781 None:intergenic
TGTACTAGGACCCATTACAG+AGG 0.756735 1_2:+69764720 Msa0088670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGAATAAATAA+AGG + chr1_2:69762754-69762773 Msa0088670:intron 10.0%
!! AAGAAAAATGAATAAATAAA+GGG + chr1_2:69762755-69762774 Msa0088670:intron 10.0%
!!! AAAAAATACATTTTTTTTTG+AGG + chr1_2:69763437-69763456 Msa0088670:intron 10.0%
!! AGAAAAATGAATAAATAAAG+GGG + chr1_2:69762756-69762775 Msa0088670:intron 15.0%
!! AGTATTAATTAGAGTTATAA+AGG + chr1_2:69762814-69762833 Msa0088670:intron 15.0%
!! GTATTAATTAGAGTTATAAA+GGG + chr1_2:69762815-69762834 Msa0088670:intron 15.0%
!!! GTATTAAAATCATTCAATTT+TGG - chr1_2:69763317-69763336 None:intergenic 15.0%
!! TAAAAATATGAGAGAAAAAA+TGG + chr1_2:69763360-69763379 Msa0088670:intron 15.0%
!! CAATTATTAAGAGAAATAAA+TGG + chr1_2:69764010-69764029 Msa0088670:intron 15.0%
!! ATTAAATGGAGAAAATTAAA+AGG - chr1_2:69764040-69764059 None:intergenic 15.0%
!!! TAATTTTCTCCATTTAATTA+AGG + chr1_2:69764042-69764061 Msa0088670:intron 15.0%
!!! AATTTTCTCCATTTAATTAA+GGG + chr1_2:69764043-69764062 Msa0088670:intron 15.0%
!! TAAAAATACCCTTAATTAAA+TGG - chr1_2:69764054-69764073 None:intergenic 15.0%
!! TTGAAATTGATCTTATAAAA+TGG + chr1_2:69764102-69764121 Msa0088670:intron 15.0%
!! TGAAATTGATCTTATAAAAT+GGG + chr1_2:69764103-69764122 Msa0088670:intron 15.0%
!! ATTCTACGTTATATATATTA+TGG + chr1_2:69765613-69765632 Msa0088670:three_prime_UTR 15.0%
!!! ATAGTAATCTTCATTTTTTG+CGG + chr1_2:69762412-69762431 Msa0088670:intron 20.0%
!!! AATTTTAGTGTTAGAAACTA+TGG - chr1_2:69762682-69762701 None:intergenic 20.0%
!! AAAAGTGGAATATATTGAAT+TGG + chr1_2:69762840-69762859 Msa0088670:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG + chr1_2:69762841-69762860 Msa0088670:intron 20.0%
!!! AGTAGTATTGAAAATTGAAA+TGG + chr1_2:69762873-69762892 Msa0088670:intron 20.0%
!!! CTTTTTTTTCTTTCTAAACA+AGG - chr1_2:69763038-69763057 None:intergenic 20.0%
!! ATTGGATGATCTTAATATAT+AGG - chr1_2:69763113-69763132 None:intergenic 20.0%
!!! GTATCTGAATTAAAGTTTTT+TGG - chr1_2:69763254-69763273 None:intergenic 20.0%
!!! CAGATTTTCAAACTTAAAAA+TGG - chr1_2:69763286-69763305 None:intergenic 20.0%
!! TAAGTTTGAAAATCTGAAAA+AGG + chr1_2:69763290-69763309 Msa0088670:intron 20.0%
!! TCAGTTTGTATACATTATAT+CGG + chr1_2:69763396-69763415 Msa0088670:intron 20.0%
!! AGAACGTCATAAAAAAAAAA+TGG + chr1_2:69763566-69763585 Msa0088670:intron 20.0%
!! GAACGTCATAAAAAAAAAAT+GGG + chr1_2:69763567-69763586 Msa0088670:intron 20.0%
!!! TTTTCTTAATTCTTATGCAT+TGG - chr1_2:69763935-69763954 None:intergenic 20.0%
!!! AACATTTTACAAAAATCTGA+GGG + chr1_2:69764354-69764373 Msa0088670:intron 20.0%
!!! GCAATTTTTTTAACAACATA+CGG - chr1_2:69764394-69764413 None:intergenic 20.0%
!!! AAAATAGTCCCTAATTTTTA+CGG - chr1_2:69764421-69764440 None:intergenic 20.0%
!! TTTAAACTAGTTACCAATAA+CGG - chr1_2:69765208-69765227 None:intergenic 20.0%
!!! ATGATTTTGATTAGTTCAAA+GGG + chr1_2:69765269-69765288 Msa0088670:intron 20.0%
!! TGATATATATGTCACAAAAA+AGG - chr1_2:69765594-69765613 None:intergenic 20.0%
! TCAATTTATATTGTCTCTGA+TGG + chr1_2:69762198-69762217 Msa0088670:CDS 25.0%
! AAAACATATGAGTACAAACA+GGG - chr1_2:69762299-69762318 None:intergenic 25.0%
!! TTTGTACTCATATGTTTTCT+GGG + chr1_2:69762301-69762320 Msa0088670:CDS 25.0%
! CTATGGTAAATATCACAATT+TGG - chr1_2:69762396-69762415 None:intergenic 25.0%
! GCAAAAAATGAAGATTACTA+TGG - chr1_2:69762413-69762432 None:intergenic 25.0%
! AAATAAGTTCCTAAAATGTG+TGG - chr1_2:69762446-69762465 None:intergenic 25.0%
! AATAGTAACATTTCAATGAG+TGG - chr1_2:69762554-69762573 None:intergenic 25.0%
! ATGTAATAGTATGATCATCA+TGG + chr1_2:69762626-69762645 Msa0088670:intron 25.0%
! ATCATGGAGAAATTACATAT+TGG + chr1_2:69762642-69762661 Msa0088670:intron 25.0%
! TCATGGAGAAATTACATATT+GGG + chr1_2:69762643-69762662 Msa0088670:intron 25.0%
!!! GGACACTTTTTTTTAGTATA+TGG + chr1_2:69762909-69762928 Msa0088670:intron 25.0%
! TATGAAAAAGGGACAAAAAT+TGG - chr1_2:69763131-69763150 None:intergenic 25.0%
!!! TTGTCCCTTTTTCATATTTT+TGG + chr1_2:69763135-69763154 Msa0088670:intron 25.0%
! CAGTCCAAAAATATGAAAAA+GGG - chr1_2:69763142-69763161 None:intergenic 25.0%
!!! CTTTTTCATATTTTTGGACT+GGG + chr1_2:69763141-69763160 Msa0088670:intron 25.0%
!!! TCTGAATTAAAGTTTTTTGG+AGG - chr1_2:69763251-69763270 None:intergenic 25.0%
! AAATGTGTTGAAGAAGAAAA+TGG - chr1_2:69763753-69763772 None:intergenic 25.0%
!!! TGTGTGATTTTTTAAAGTTC+AGG + chr1_2:69763860-69763879 Msa0088670:intron 25.0%
!!! GTGTGATTTTTTAAAGTTCA+GGG + chr1_2:69763861-69763880 Msa0088670:intron 25.0%
!!! TTTTTTTAAAAGTCGGTATC+CGG + chr1_2:69764244-69764263 Msa0088670:intron 25.0%
!! CTCAGATTTTTGTAAAATGT+TGG - chr1_2:69764355-69764374 None:intergenic 25.0%
!! CAACATTTTACAAAAATCTG+AGG + chr1_2:69764353-69764372 Msa0088670:intron 25.0%
! ATTGCTAATCCGTAAAAATT+AGG + chr1_2:69764409-69764428 Msa0088670:intron 25.0%
! TTGCTAATCCGTAAAAATTA+GGG + chr1_2:69764410-69764429 Msa0088670:intron 25.0%
! TGAATAAGAATATTGTTCCA+CGG - chr1_2:69764461-69764480 None:intergenic 25.0%
!! TATAAATCATGGTGTTTTAC+AGG + chr1_2:69765053-69765072 Msa0088670:CDS 25.0%
! AGAATCACGAACTAATTATT+CGG + chr1_2:69765116-69765135 Msa0088670:CDS 25.0%
! TTAAACTAGTTACCAATAAC+GGG - chr1_2:69765207-69765226 None:intergenic 25.0%
! CTTTGAACTAATCAAAATCA+TGG - chr1_2:69765270-69765289 None:intergenic 25.0%
!!! CATGATTTTGATTAGTTCAA+AGG + chr1_2:69765268-69765287 Msa0088670:intron 25.0%
! AACTTTGATGCTTTACAATA+TGG - chr1_2:69765490-69765509 None:intergenic 25.0%
!! AGTTTCAAAATTGATAGCAA+TGG - chr1_2:69765640-69765659 None:intergenic 25.0%
TTTGGACATAATCGTGAAAT+TGG - chr1_2:69761910-69761929 None:intergenic 30.0%
GAAAACATATGAGTACAAAC+AGG - chr1_2:69762300-69762319 None:intergenic 30.0%
! GTTTGTACTCATATGTTTTC+TGG + chr1_2:69762300-69762319 Msa0088670:CDS 30.0%
! TTGTACTCATATGTTTTCTG+GGG + chr1_2:69762302-69762321 Msa0088670:CDS 30.0%
CAAAGTGGATAAAGAATGAA+GGG - chr1_2:69762340-69762359 None:intergenic 30.0%
! GTACATTAACCACACATTTT+AGG + chr1_2:69762434-69762453 Msa0088670:intron 30.0%
GAGTTATAAAGGGAAAAAAG+TGG + chr1_2:69762825-69762844 Msa0088670:intron 30.0%
! TTGAAATGGCTCAGTTATTT+TGG + chr1_2:69762887-69762906 Msa0088670:intron 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG + chr1_2:69762888-69762907 Msa0088670:intron 30.0%
! CTCATATTTTCACTCATTCA+CGG + chr1_2:69763077-69763096 Msa0088670:intron 30.0%
GGATGATCTTAATATATAGG+AGG - chr1_2:69763110-69763129 None:intergenic 30.0%
CCAGTCCAAAAATATGAAAA+AGG - chr1_2:69763143-69763162 None:intergenic 30.0%
!!! CCTTTTTCATATTTTTGGAC+TGG + chr1_2:69763140-69763159 Msa0088670:intron 30.0%
TGATGATAATTCCACATCAT+CGG - chr1_2:69763208-69763227 None:intergenic 30.0%
AAAAAAAAAATGGGCCATTG+AGG + chr1_2:69763576-69763595 Msa0088670:intron 30.0%
AATTGACCAAAGAGATTGAA+GGG - chr1_2:69763779-69763798 None:intergenic 30.0%
TTCAATCTCTTTGGTCAATT+GGG + chr1_2:69763779-69763798 Msa0088670:intron 30.0%
TATGCAAAAGCAAAATCTCA+GGG + chr1_2:69763808-69763827 Msa0088670:intron 30.0%
!!! TGGGACAATTTTTTTTGCAA+AGG + chr1_2:69764122-69764141 Msa0088670:intron 30.0%
CTCTTTATTAGTTGATCCTT+GGG - chr1_2:69764270-69764289 None:intergenic 30.0%
TCTCTTTATTAGTTGATCCT+TGG - chr1_2:69764271-69764290 None:intergenic 30.0%
!!! ACTGTCATTTTACAATGCTA+GGG + chr1_2:69764299-69764318 Msa0088670:intron 30.0%
TGCTGAAGAAAATGAAGAAT+CGG - chr1_2:69764659-69764678 None:intergenic 30.0%
AATCCTACGAAAGTAATCAT+CGG - chr1_2:69764812-69764831 None:intergenic 30.0%
TGTGCAAGATAAATAGACAA+AGG - chr1_2:69764937-69764956 None:intergenic 30.0%
TCTATTTATCTTGCACAGAA+AGG + chr1_2:69764940-69764959 Msa0088670:CDS 30.0%
!! TTTGGCTTGACTATAAATCA+TGG + chr1_2:69765042-69765061 Msa0088670:CDS 30.0%
TACAGGACATTAGAAAAACA+AGG + chr1_2:69765070-69765089 Msa0088670:CDS 30.0%
ACAGGACATTAGAAAAACAA+GGG + chr1_2:69765071-69765090 Msa0088670:CDS 30.0%
AAAAACAAGGGCTAAAACTT+TGG + chr1_2:69765083-69765102 Msa0088670:CDS 30.0%
AAAACAAGGGCTAAAACTTT+GGG + chr1_2:69765084-69765103 Msa0088670:CDS 30.0%
TACATTCAAACTAATGCTGA+TGG + chr1_2:69765305-69765324 Msa0088670:intron 30.0%
!! CATGCTTTGATTTGTAGAAG+TGG - chr1_2:69761940-69761959 None:intergenic 35.0%
TATATTGTCTCTGATGGAAC+CGG + chr1_2:69762204-69762223 Msa0088670:CDS 35.0%
GCAAAGTGGATAAAGAATGA+AGG - chr1_2:69762341-69762360 None:intergenic 35.0%
ATAAGTGTGAAATGAGCCAA+GGG - chr1_2:69762734-69762753 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG - chr1_2:69762735-69762754 None:intergenic 35.0%
AGTATATGGCTCAGTTAATC+CGG + chr1_2:69762923-69762942 Msa0088670:intron 35.0%
TCCCTATTTGTAAAACCATG+TGG + chr1_2:69762965-69762984 Msa0088670:intron 35.0%
!! GCCACATGGTTTTACAAATA+GGG - chr1_2:69762969-69762988 None:intergenic 35.0%
CGTGAATGAGTGAAAATATG+AGG - chr1_2:69763079-69763098 None:intergenic 35.0%
!!! CATATTTTTGGACTGGGAAA+TGG + chr1_2:69763147-69763166 Msa0088670:intron 35.0%
GATGATAATTCCACATCATC+GGG - chr1_2:69763207-69763226 None:intergenic 35.0%
! GCTTTTGTACATAACCTCAA+TGG - chr1_2:69763593-69763612 None:intergenic 35.0%
TTTCTTCCCTTCAATCTCTT+TGG + chr1_2:69763770-69763789 Msa0088670:intron 35.0%
CAATTGACCAAAGAGATTGA+AGG - chr1_2:69763780-69763799 None:intergenic 35.0%
CTTCAATCTCTTTGGTCAAT+TGG + chr1_2:69763778-69763797 Msa0088670:intron 35.0%
GTATGCAAAAGCAAAATCTC+AGG + chr1_2:69763807-69763826 Msa0088670:intron 35.0%
! TATTGACATTTTACGATGCC+AGG + chr1_2:69764189-69764208 Msa0088670:intron 35.0%
! ATTGACATTTTACGATGCCA+GGG + chr1_2:69764190-69764209 Msa0088670:intron 35.0%
!!! GACTGTCATTTTACAATGCT+AGG + chr1_2:69764298-69764317 Msa0088670:intron 35.0%
!! ACTAGATTGATGATGTAGAG+AGG + chr1_2:69764575-69764594 Msa0088670:intron 35.0%
! TGATGATGTAGAGAGGTTAT+TGG + chr1_2:69764582-69764601 Msa0088670:CDS 35.0%
GATAATAAAGCAAGCAGTGA+AGG + chr1_2:69764606-69764625 Msa0088670:CDS 35.0%
TTCACTATCAAGCAAGATGA+TGG + chr1_2:69764844-69764863 Msa0088670:CDS 35.0%
TCACTATCAAGCAAGATGAT+GGG + chr1_2:69764845-69764864 Msa0088670:CDS 35.0%
AAGGCTGATATTGTTCTTAC+CGG + chr1_2:69764889-69764908 Msa0088670:CDS 35.0%
TCTTGCACAGAAAGGATATA+AGG + chr1_2:69764948-69764967 Msa0088670:CDS 35.0%
ATTTCCACACCCATTACAAT+CGG - chr1_2:69764985-69765004 None:intergenic 35.0%
! GTTGATCCAAAGAAGGTTTT+TGG + chr1_2:69765024-69765043 Msa0088670:CDS 35.0%
ACGAACTAATTATTCGGAGA+TGG + chr1_2:69765122-69765141 Msa0088670:CDS 35.0%
ACATTGTGTACTTATGCTTG+CGG - chr1_2:69765418-69765437 None:intergenic 35.0%
TAGCATCTCAAAACGCTATT+AGG + chr1_2:69765439-69765458 Msa0088670:CDS 35.0%
AGCATCTCAAAACGCTATTA+GGG + chr1_2:69765440-69765459 Msa0088670:CDS 35.0%
!!! AGTCGTATATTTTAGCCAAC+AGG + chr1_2:69765564-69765583 Msa0088670:three_prime_UTR 35.0%
TGTAGAAGTGGATGTGTGTT+TGG - chr1_2:69761928-69761947 None:intergenic 40.0%
! CGTTGTTGTTGTTGTTGTTG+CGG - chr1_2:69761966-69761985 None:intergenic 40.0%
AACAACAACAACAACGACAC+AGG + chr1_2:69761970-69761989 Msa0088670:CDS 40.0%
GTTGTTGGATTCTATGGTCT+GGG - chr1_2:69762103-69762122 None:intergenic 40.0%
AGTTGTTGGATTCTATGGTC+TGG - chr1_2:69762104-69762123 None:intergenic 40.0%
TGGAGAGTTGTTGGATTCTA+TGG - chr1_2:69762109-69762128 None:intergenic 40.0%
AGCATTAACACAGTGTTCAG+CGG - chr1_2:69762235-69762254 None:intergenic 40.0%
! ACACTGTGTTAATGCTGCTT+TGG + chr1_2:69762239-69762258 Msa0088670:CDS 40.0%
!! CACTGTGTTAATGCTGCTTT+GGG + chr1_2:69762240-69762259 Msa0088670:CDS 40.0%
GGGTCAGTTTGATTATTGCT+TGG + chr1_2:69762260-69762279 Msa0088670:CDS 40.0%
GATTATTGCTTGGTTGATCG+TGG + chr1_2:69762270-69762289 Msa0088670:CDS 40.0%
CTCAATTAATTCAGGACGGA+GGG - chr1_2:69762711-69762730 None:intergenic 40.0%
AGGGCTCAATTAATTCAGGA+CGG - chr1_2:69762715-69762734 None:intergenic 40.0%
TCCTGAATTAATTGAGCCCT+TGG + chr1_2:69762715-69762734 Msa0088670:intron 40.0%
GTATATGGCTCAGTTAATCC+GGG + chr1_2:69762924-69762943 Msa0088670:intron 40.0%
!! GGCCACATGGTTTTACAAAT+AGG - chr1_2:69762970-69762989 None:intergenic 40.0%
TTTCATACAACCCGATGATG+TGG + chr1_2:69763194-69763213 Msa0088670:intron 40.0%
ATGTGCAGCAGCTAGATTTA+GGG - chr1_2:69763638-69763657 None:intergenic 40.0%
! TGCACATGTTTTACAGGTTG+TGG + chr1_2:69763651-69763670 Msa0088670:intron 40.0%
AAAGTGCAGCCAACAGAAAT+TGG - chr1_2:69763685-69763704 None:intergenic 40.0%
!!! TTTTAAAGTTCAGGGTGTGC+AGG + chr1_2:69763869-69763888 Msa0088670:intron 40.0%
!! GCAAAGGTGTCTTACATAGA+TGG + chr1_2:69764138-69764157 Msa0088670:intron 40.0%
CTTATTACTACCTTTGTCCC+TGG - chr1_2:69764210-69764229 None:intergenic 40.0%
TTATTAGTTGATCCTTGGGC+CGG - chr1_2:69764266-69764285 None:intergenic 40.0%
GACAAGTATCTACAATTCCG+TGG + chr1_2:69764441-69764460 Msa0088670:intron 40.0%
! ATTTTCTTCAGCAGCTGAGA+AGG + chr1_2:69764666-69764685 Msa0088670:CDS 40.0%
TGAGAAGGCCTGCAAATTAT+GGG + chr1_2:69764681-69764700 Msa0088670:CDS 40.0%
GTGCCTTCTACTAATGTACT+AGG + chr1_2:69764706-69764725 Msa0088670:CDS 40.0%
GGTCCTAGTACATTAGTAGA+AGG - chr1_2:69764712-69764731 None:intergenic 40.0%
TCTCCGATGATTACTTTCGT+AGG + chr1_2:69764806-69764825 Msa0088670:CDS 40.0%
CACTATCAAGCAAGATGATG+GGG + chr1_2:69764846-69764865 Msa0088670:CDS 40.0%
GGTAAGAACAATATCAGCCT+TGG - chr1_2:69764890-69764909 None:intergenic 40.0%
AGGCTGATATTGTTCTTACC+GGG + chr1_2:69764890-69764909 Msa0088670:CDS 40.0%
!! AATAGACAAAGGTGTCTTCC+CGG - chr1_2:69764926-69764945 None:intergenic 40.0%
!! CTTTCAGGTTGATCCAAAGA+AGG + chr1_2:69765017-69765036 Msa0088670:CDS 40.0%
GTCAAGCCAAAAACCTTCTT+TGG - chr1_2:69765033-69765052 None:intergenic 40.0%
!! GGAGATGGATTATATTCGAG+AGG + chr1_2:69765137-69765156 Msa0088670:CDS 40.0%
AGGAACTTGAATTTGCAGGA+AGG + chr1_2:69765157-69765176 Msa0088670:CDS 40.0%
GTGGAAAAGCCTCAATACAA+CGG - chr1_2:69765393-69765412 None:intergenic 40.0%
! CACAAAAAAGGCATACCTGT+TGG - chr1_2:69765582-69765601 None:intergenic 40.0%
ACAGGATCGAAGTCAGTTAC+AGG + chr1_2:69761988-69762007 Msa0088670:CDS 45.0%
GTCAGTTACAGGAAAACCCA+AGG + chr1_2:69761999-69762018 Msa0088670:CDS 45.0%
! AATACGTGCCGGTCGAAAAT+TGG + chr1_2:69762059-69762078 Msa0088670:CDS 45.0%
TGGGTGGGTATAAAGCAAAG+TGG - chr1_2:69762355-69762374 None:intergenic 45.0%
AGTTACAGCATTGTGTGGGT+GGG - chr1_2:69762370-69762389 None:intergenic 45.0%
GACGAGTTACAGCATTGTGT+GGG - chr1_2:69762374-69762393 None:intergenic 45.0%
GCTCAATTAATTCAGGACGG+AGG - chr1_2:69762712-69762731 None:intergenic 45.0%
GCCAAGGGCTCAATTAATTC+AGG - chr1_2:69762719-69762738 None:intergenic 45.0%
TTGTAAAACCATGTGGCCAG+TGG + chr1_2:69762972-69762991 Msa0088670:intron 45.0%
CATGTGCAGCAGCTAGATTT+AGG - chr1_2:69763639-69763658 None:intergenic 45.0%
! AGCTGCTGCACATGTTTTAC+AGG + chr1_2:69763645-69763664 Msa0088670:intron 45.0%
TCTCTTTGGTCAATTGGGTC+AGG + chr1_2:69763784-69763803 Msa0088670:intron 45.0%
CTCTTTGGTCAATTGGGTCA+GGG + chr1_2:69763785-69763804 Msa0088670:intron 45.0%
! TTATGCATTGGCCACATGCA+GGG - chr1_2:69763923-69763942 None:intergenic 45.0%
! TTTTACGATGCCAGGGACAA+AGG + chr1_2:69764197-69764216 Msa0088670:intron 45.0%
AGCAGTGAAGGAAGATGCAT+TGG + chr1_2:69764618-69764637 Msa0088670:CDS 45.0%
CTGAGAAGGCCTGCAAATTA+TGG + chr1_2:69764680-69764699 Msa0088670:CDS 45.0%
GAGAAGGCCTGCAAATTATG+GGG + chr1_2:69764682-69764701 Msa0088670:CDS 45.0%
TGTACTAGGACCCATTACAG+AGG + chr1_2:69764720-69764739 Msa0088670:CDS 45.0%
GAAGCAATGGCCTCTGTAAT+GGG - chr1_2:69764733-69764752 None:intergenic 45.0%
AGAAGCAATGGCCTCTGTAA+TGG - chr1_2:69764734-69764753 None:intergenic 45.0%
AGAGGCCATTGCTTCTCATT+TGG + chr1_2:69764738-69764757 Msa0088670:CDS 45.0%
GAGGCCATTGCTTCTCATTT+GGG + chr1_2:69764739-69764758 Msa0088670:CDS 45.0%
CACACCCAAATGAGAAGCAA+TGG - chr1_2:69764746-69764765 None:intergenic 45.0%
CGAAAGTAATCATCGGAGAG+TGG - chr1_2:69764805-69764824 None:intergenic 45.0%
ATCTCCACAGAATCTTGCCA+AGG + chr1_2:69764870-69764889 Msa0088670:CDS 45.0%
GGCTGATATTGTTCTTACCG+GGG + chr1_2:69764891-69764910 Msa0088670:CDS 45.0%
!! GCCAACGTACCGATTGTAAT+GGG + chr1_2:69764973-69764992 Msa0088670:CDS 45.0%
ACCCATTACAATCGGTACGT+TGG - chr1_2:69764977-69764996 None:intergenic 45.0%
! TAATGGGTGTGGAAATGCCT+AGG + chr1_2:69764989-69765008 Msa0088670:CDS 45.0%
AATGCCTAGGACTCTCTTTC+AGG + chr1_2:69765002-69765021 Msa0088670:CDS 45.0%
TCAACCTGAAAGAGAGTCCT+AGG - chr1_2:69765009-69765028 None:intergenic 45.0%
CGAGAGGAACTTGAATTTGC+AGG + chr1_2:69765153-69765172 Msa0088670:CDS 45.0%
TCTTTGCTCAAAACCCTGTC+TGG + chr1_2:69765181-69765200 Msa0088670:CDS 45.0%
AAACTGCAGCCGTTGTATTG+AGG + chr1_2:69765381-69765400 Msa0088670:CDS 45.0%
!!! TTTTTATTTACTTATAAAAT+TGG - chr1_2:69763346-69763365 None:intergenic 5.0%
!!! TATTTTATTTTTTTAAAAGT+CGG + chr1_2:69764237-69764256 Msa0088670:intron 5.0%
! AGACCGGTCCAATTTTCGAC+CGG - chr1_2:69762070-69762089 None:intergenic 50.0%
GATTCTATGGTCTGGGTTCG+AGG - chr1_2:69762096-69762115 None:intergenic 50.0%
ATCCAACAACTCTCCACCTC+CGG + chr1_2:69762113-69762132 Msa0088670:CDS 50.0%
GATGACACCGTCAGTGAAGA+CGG + chr1_2:69762156-69762175 Msa0088670:CDS 50.0%
ATGACACCGTCAGTGAAGAC+GGG + chr1_2:69762157-69762176 Msa0088670:CDS 50.0%
TGAAGACGGGTCAGAGTTCA+AGG + chr1_2:69762170-69762189 Msa0088670:CDS 50.0%
TTGTCTCTGATGGAACCGGT+TGG + chr1_2:69762208-69762227 Msa0088670:CDS 50.0%
GAGTTACAGCATTGTGTGGG+TGG - chr1_2:69762371-69762390 None:intergenic 50.0%
GGACGAGTTACAGCATTGTG+TGG - chr1_2:69762375-69762394 None:intergenic 50.0%
ATGGCTCAGTTAATCCGGGA+CGG + chr1_2:69762928-69762947 Msa0088670:intron 50.0%
GTTAAATAGTCTGCACCCCC+TGG - chr1_2:69763016-69763035 None:intergenic 50.0%
GCCAACAGAAATTGGAGTGG+CGG - chr1_2:69763677-69763696 None:intergenic 50.0%
GCAGCCAACAGAAATTGGAG+TGG - chr1_2:69763680-69763699 None:intergenic 50.0%
GGGGAGCTATGTTGATGTGA+GGG - chr1_2:69763901-69763920 None:intergenic 50.0%
! TATGCATTGGCCACATGCAG+GGG - chr1_2:69763922-69763941 None:intergenic 50.0%
! CTTATGCATTGGCCACATGC+AGG - chr1_2:69763924-69763943 None:intergenic 50.0%
! AGGCACACCCCATAATTTGC+AGG - chr1_2:69764692-69764711 None:intergenic 50.0%
CATTTGGGTGTGTCTCCTTC+TGG + chr1_2:69764754-69764773 Msa0088670:CDS 50.0%
TCAGCCTTGGCAAGATTCTG+TGG - chr1_2:69764877-69764896 None:intergenic 50.0%
!! ACAAAGGTGTCTTCCCGGTT+CGG - chr1_2:69764921-69764940 None:intergenic 50.0%
!! CGCCAACGTACCGATTGTAA+TGG + chr1_2:69764972-69764991 Msa0088670:CDS 50.0%
!! CGTACCGATTGTAATGGGTG+TGG + chr1_2:69764978-69764997 Msa0088670:CDS 50.0%
!! TACCAATAACGGGCCAGACA+GGG - chr1_2:69765197-69765216 None:intergenic 50.0%
!! TTACCAATAACGGGCCAGAC+AGG - chr1_2:69765198-69765217 None:intergenic 50.0%
TGTACTTATGCTTGCGGTCG+TGG - chr1_2:69765412-69765431 None:intergenic 50.0%
TTCAGCTGGGGACTCACCTT+GGG - chr1_2:69762018-69762037 None:intergenic 55.0%
! GTGCCGGTCGAAAATTGGAC+CGG + chr1_2:69762064-69762083 Msa0088670:CDS 55.0%
TCTGGGTTCGAGGACTAGAC+CGG - chr1_2:69762086-69762105 None:intergenic 55.0%
AACCGGAGGTGGAGAGTTGT+TGG - chr1_2:69762118-69762137 None:intergenic 55.0%
!! CTTCACTGACGGTGTCATCC+AGG - chr1_2:69762155-69762174 None:intergenic 55.0%
CTCTGACCCGTCTTCACTGA+CGG - chr1_2:69762166-69762185 None:intergenic 55.0%
ACAGTGTTCAGCGGTCCAAC+CGG - chr1_2:69762226-69762245 None:intergenic 55.0%
CTCAGTTAATCCGGGACGGA+GGG + chr1_2:69762932-69762951 Msa0088670:intron 55.0%
AAGATGTACTCCCTCCGTCC+CGG - chr1_2:69762945-69762964 None:intergenic 55.0%
GCCGCCACTCCAATTTCTGT+TGG + chr1_2:69763673-69763692 Msa0088670:intron 55.0%
GGGGGAGCTATGTTGATGTG+AGG - chr1_2:69763902-69763921 None:intergenic 55.0%
! ATGCATTGGCCACATGCAGG+GGG - chr1_2:69763921-69763940 None:intergenic 55.0%
AAAAGTCGGTATCCGGCCCA+AGG + chr1_2:69764251-69764270 Msa0088670:intron 55.0%
!! CAAAGGTGTCTTCCCGGTTC+GGG - chr1_2:69764920-69764939 None:intergenic 55.0%
AACCCTGTCTGGCCCGTTAT+TGG + chr1_2:69765192-69765211 Msa0088670:CDS 55.0%
GTTCAGCTGGGGACTCACCT+TGG - chr1_2:69762019-69762038 None:intergenic 60.0%
AGGTGAGTCCCCAGCTGAAC+CGG + chr1_2:69762019-69762038 Msa0088670:CDS 60.0%
AGGGCTCGTGCAATACGTGC+CGG + chr1_2:69762048-69762067 Msa0088670:CDS 60.0%
TCCACCTCCGGTTCCTTTCG+CGG + chr1_2:69762125-69762144 Msa0088670:CDS 60.0%
AGGTCGACCGCGAAAGGAAC+CGG - chr1_2:69762135-69762154 None:intergenic 60.0%
TCATCCAGGTCGACCGCGAA+AGG - chr1_2:69762141-69762160 None:intergenic 60.0%
GCTCAGTTAATCCGGGACGG+AGG + chr1_2:69762931-69762950 Msa0088670:intron 60.0%
TGGATACGCCACTGGCCACA+TGG - chr1_2:69762983-69763002 None:intergenic 60.0%
ATGTGGCCAGTGGCGTATCC+AGG + chr1_2:69762982-69763001 Msa0088670:intron 60.0%
GTATCCAGGACCCTGGACCA+GGG + chr1_2:69762996-69763015 Msa0088670:intron 60.0%
TATCCAGGACCCTGGACCAG+GGG + chr1_2:69762997-69763016 Msa0088670:intron 60.0%
ACATAGCTCCCCCCTGCATG+TGG + chr1_2:69763909-69763928 Msa0088670:intron 60.0%
! TGCATTGGCCACATGCAGGG+GGG - chr1_2:69763920-69763939 None:intergenic 60.0%
! TCTCCTTCTGGCCTTCCTCG+TGG + chr1_2:69764766-69764785 Msa0088670:CDS 60.0%
TGGCCTTCCTCGTGGTGCTT+CGG + chr1_2:69764774-69764793 Msa0088670:CDS 60.0%
CTTACCGGGGTTTCCCGAAC+CGG + chr1_2:69764904-69764923 Msa0088670:CDS 60.0%
TTACCGGGGTTTCCCGAACC+GGG + chr1_2:69764905-69764924 Msa0088670:CDS 60.0%
TGAGTCCCCAGCTGAACCGG+TGG + chr1_2:69762022-69762041 Msa0088670:CDS 65.0%
!! CTGGACCACCGGTTCAGCTG+GGG - chr1_2:69762030-69762049 None:intergenic 65.0%
!! CCTGGACCACCGGTTCAGCT+GGG - chr1_2:69762031-69762050 None:intergenic 65.0%
CCAGCTGAACCGGTGGTCCA+GGG + chr1_2:69762029-69762048 Msa0088670:CDS 65.0%
TTGCACGAGCCCTGGACCAC+CGG - chr1_2:69762041-69762060 None:intergenic 65.0%
GGCACGTATTGCACGAGCCC+TGG - chr1_2:69762049-69762068 None:intergenic 65.0%
ACCGCGAAAGGAACCGGAGG+TGG - chr1_2:69762129-69762148 None:intergenic 65.0%
TCGACCGCGAAAGGAACCGG+AGG - chr1_2:69762132-69762151 None:intergenic 65.0%
GGTTCCTTTCGCGGTCGACC+TGG + chr1_2:69762134-69762153 Msa0088670:CDS 65.0%
CAGGGTCCTGGATACGCCAC+TGG - chr1_2:69762991-69763010 None:intergenic 65.0%
CAGTGGCGTATCCAGGACCC+TGG + chr1_2:69762989-69763008 Msa0088670:intron 65.0%
CGTATCCAGGACCCTGGACC+AGG + chr1_2:69762995-69763014 Msa0088670:intron 65.0%
ATCCAGGACCCTGGACCAGG+GGG + chr1_2:69762998-69763017 Msa0088670:intron 65.0%
AGTCTGCACCCCCTGGTCCA+GGG - chr1_2:69763009-69763028 None:intergenic 65.0%
TAGTCTGCACCCCCTGGTCC+AGG - chr1_2:69763010-69763029 None:intergenic 65.0%
GCACCACGAGGAAGGCCAGA+AGG - chr1_2:69764772-69764791 None:intergenic 65.0%
GGCCTTCCTCGTGGTGCTTC+GGG + chr1_2:69764775-69764794 Msa0088670:CDS 65.0%
! TGCCCGAAGCACCACGAGGA+AGG - chr1_2:69764780-69764799 None:intergenic 65.0%
! GGAATGCCCGAAGCACCACG+AGG - chr1_2:69764784-69764803 None:intergenic 65.0%
!! CTTCCCGGTTCGGGAAACCC+CGG - chr1_2:69764911-69764930 None:intergenic 65.0%
CCCAGCTGAACCGGTGGTCC+AGG + chr1_2:69762028-69762047 Msa0088670:CDS 70.0%
!! CCCTGGACCACCGGTTCAGC+TGG - chr1_2:69762032-69762051 None:intergenic 70.0%
CACCCCCTGGTCCAGGGTCC+TGG - chr1_2:69763003-69763022 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 69761841 69765707 69761841 ID=Msa0088670;Name=Msa0088670
chr1_2 mRNA 69761841 69765707 69761841 ID=Msa0088670-mRNA-1;Parent=Msa0088670;Name=Msa0088670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63|1|1|1|1|1|3|247|385
chr1_2 exon 69761841 69762323 69761841 ID=Msa0088670-mRNA-1:exon:23982;Parent=Msa0088670-mRNA-1
chr1_2 exon 69764580 69765213 69764580 ID=Msa0088670-mRNA-1:exon:23983;Parent=Msa0088670-mRNA-1
chr1_2 exon 69765357 69765707 69765357 ID=Msa0088670-mRNA-1:exon:23984;Parent=Msa0088670-mRNA-1
chr1_2 five_prime_UTR 69761841 69761903 69761841 ID=Msa0088670-mRNA-1:five_prime_utr;Parent=Msa0088670-mRNA-1
chr1_2 CDS 69761904 69762323 69761904 ID=Msa0088670-mRNA-1:cds;Parent=Msa0088670-mRNA-1
chr1_2 CDS 69764580 69765213 69764580 ID=Msa0088670-mRNA-1:cds;Parent=Msa0088670-mRNA-1
chr1_2 CDS 69765357 69765460 69765357 ID=Msa0088670-mRNA-1:cds;Parent=Msa0088670-mRNA-1
chr1_2 three_prime_UTR 69765461 69765707 69765461 ID=Msa0088670-mRNA-1:three_prime_utr;Parent=Msa0088670-mRNA-1
Gene Sequence

>Msa0088670

ATGCCAATTTCACGATTATGTCCAAACACACATCCACTTCTACAAATCAAAGCATGCAACCGCAACAACAACAACAACAACGACACAGGATCGAAGTCAGTTACAGGAAAACCCAAGGTGAGTCCCCAGCTGAACCGGTGGTCCAGGGCTCGTGCAATACGTGCCGGTCGAAAATTGGACCGGTCTAGTCCTCGAACCCAGACCATAGAATCCAACAACTCTCCACCTCCGGTTCCTTTCGCGGTCGACCTGGATGACACCGTCAGTGAAGACGGGTCAGAGTTCAAGGCTAAGTCAATTTATATTGTCTCTGATGGAACCGGTTGGACCGCTGAACACTGTGTTAATGCTGCTTTGGGTCAGTTTGATTATTGCTTGGTTGATCGTGGTTGCCCTGTTTGTACTCATATGTTTTCTGGGATTGATGATGTAGAGAGGTTATTGGAGATAATAAAGCAAGCAGTGAAGGAAGATGCATTGGTTGTGTATACTTTAGCCGATTCTTCATTTTCTTCAGCAGCTGAGAAGGCCTGCAAATTATGGGGTGTGCCTTCTACTAATGTACTAGGACCCATTACAGAGGCCATTGCTTCTCATTTGGGTGTGTCTCCTTCTGGCCTTCCTCGTGGTGCTTCGGGCATTCCACTCTCCGATGATTACTTTCGTAGGATTGAAGCTATTGAATTCACTATCAAGCAAGATGATGGGGCATCTCCACAGAATCTTGCCAAGGCTGATATTGTTCTTACCGGGGTTTCCCGAACCGGGAAGACACCTTTGTCTATTTATCTTGCACAGAAAGGATATAAGGTCGCCAACGTACCGATTGTAATGGGTGTGGAAATGCCTAGGACTCTCTTTCAGGTTGATCCAAAGAAGGTTTTTGGCTTGACTATAAATCATGGTGTTTTACAGGACATTAGAAAAACAAGGGCTAAAACTTTGGGATTTAGTTCAGAATCACGAACTAATTATTCGGAGATGGATTATATTCGAGAGGAACTTGAATTTGCAGGAAGGCTCTTTGCTCAAAACCCTGTCTGGCCCGTTATTGATGTGACTGCTAAAGCGATAGAAGAAACTGCAGCCGTTGTATTGAGGCTTTTCCACGACCGCAAGCATAAGTACACAATGTCTAGCATCTCAAAACGCTATTAG

Protein sequence

>Msa0088670

MPISRLCPNTHPLLQIKACNRNNNNNNDTGSKSVTGKPKVSPQLNRWSRARAIRAGRKLDRSSPRTQTIESNNSPPPVPFAVDLDDTVSEDGSEFKAKSIYIVSDGTGWTAEHCVNAALGQFDYCLVDRGCPVCTHMFSGIDDVERLLEIIKQAVKEDALVVYTLADSSFSSAAEKACKLWGVPSTNVLGPITEAIASHLGVSPSGLPRGASGIPLSDDYFRRIEAIEFTIKQDDGASPQNLAKADIVLTGVSRTGKTPLSIYLAQKGYKVANVPIVMGVEMPRTLFQVDPKKVFGLTINHGVLQDIRKTRAKTLGFSSESRTNYSEMDYIREELEFAGRLFAQNPVWPVIDVTAKAIEETAAVVLRLFHDRKHKYTMSSISKRY*